AlfalfaGEDB | Msa1382840

M. sativa cultivar zhongmu-4 / Msa1382840

KEGG: K04733
GO: GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0019899 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051020 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564
PFAM: PF00582.29

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1382840	XP_013461572.1	95.014	702	23	1	1	702	1	690	0.0	1362

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1382840	sp\|B5X4Z9\|STU_ARATH	52.691	353	156	6	335	683	254	599	3.42e-108	344
Msa1382840	sp\|B5X4Z9\|STU_ARATH	36.691	139	81	2	13	151	14	145	1.47e-15	84.0

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1382840	A0A072V190	95.014	702	23	1	1	702	1	690	0.0	1362

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0473920	Msa1382840	0.896417	3.763182e-76	-8.615850e-47
Msa0518360	Msa1382840	0.925274	2.290907e-90	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1382840	MtrunA17_Chr3g0130431	95.014	702	23	1	1	702	1	690	0.0	1362
Msa1382840	MtrunA17_Chr3g0125281	53.979	754	281	15	7	702	9	754	0.0	710
Msa1382840	MtrunA17_Chr1g0159711	54.722	720	272	17	9	702	10	701	0.0	677
Msa1382840	MtrunA17_Chr4g0036981	52.094	382	168	6	328	702	271	644	3.98e-122	378
Msa1382840	MtrunA17_Chr4g0036981	42.254	142	69	3	11	151	6	135	1.75e-24	108
Msa1382840	MtrunA17_Chr3g0145591	50.815	368	172	6	341	702	130	494	9.96e-121	370
Msa1382840	MtrunA17_Chr3g0111431	44.857	350	168	13	346	674	169	514	3.04e-79	262
Msa1382840	MtrunA17_Chr5g0413511	41.837	294	163	4	345	632	46	337	2.22e-76	251
Msa1382840	MtrunA17_Chr2g0286821	42.056	321	174	6	339	656	108	419	4.31e-76	251
Msa1382840	MtrunA17_Chr8g0389251	41.693	319	169	5	318	631	371	677	5.00e-76	258

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1382840	AT5G63940.1	51.909	707	298	8	13	702	22	703	0.0	684
Msa1382840	AT1G77280.2	51.575	762	286	15	4	702	12	753	0.0	684
Msa1382840	AT1G77280.1	51.575	762	286	15	4	702	12	753	0.0	684
Msa1382840	AT1G21590.1	48.271	752	326	12	9	702	10	756	0.0	612
Msa1382840	AT1G21590.2	47.443	704	310	11	54	702	18	716	0.0	563
Msa1382840	AT4G35030.7	49.859	355	166	6	334	683	84	431	1.49e-111	345
Msa1382840	AT4G35030.3	49.859	355	166	6	334	683	84	431	1.49e-111	345
Msa1382840	AT4G35030.6	49.859	355	166	6	334	683	84	431	1.49e-111	345
Msa1382840	AT4G35030.5	49.859	355	166	6	334	683	84	431	1.49e-111	345
Msa1382840	AT2G16750.2	52.691	353	156	6	335	683	254	599	3.48e-109	344

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Find 197 sgRNAs with CRISPR-Local

Find 289 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACGTGATGATGAATCTG+TGG	0.673229	tig0020524:+131467	Msa1382840:CDS
AAAATGGTATCAGTTTAAAA+AGG	0.354114	tig0020524:-133939	None:intergenic
AAAATTGATGTATATGCTTT+TGG	0.268106	tig0020524:+132803	Msa1382840:CDS
AAATGCAGAAAATGAAAGTG+TGG	0.613483	tig0020524:-131225	None:intergenic
AACACATGATGGATTTGATG+AGG	0.701368	tig0020524:+133387	Msa1382840:CDS
AACACATTTATGCAATTTCT+TGG	0.229000	tig0020524:-131136	None:intergenic
AACAGAAAATCCGCTTGCTA+TGG	0.550804	tig0020524:+131434	Msa1382840:CDS
AACATCAGTACAAATAATTT+GGG	0.392890	tig0020524:-132641	None:intergenic
AACATCGTCGTTGTTATCGT+TGG	0.523559	tig0020524:+130769	Msa1382840:CDS
AAGACTATTTGCGAGGAAGA+TGG	0.478171	tig0020524:+133512	Msa1382840:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ATTCTCCCAATGAAGTTAAT+CGG	+	tig0020524:130481-130500	Msa1382840:exon	30.0%
AAATGCAGAAAATGAAAGTG+TGG	-	tig0020524:131228-131247	None:intergenic	30.0%
TCATAGCAGAAAAATTACAG+TGG	+	tig0020524:131304-131323	Msa1382840:intron	30.0%
TCTGATACCGAATTTAATCA+AGG	+	tig0020524:131390-131409	Msa1382840:CDS	30.0%
CAACTCTCCTTGATTAAATT+CGG	-	tig0020524:131400-131419	None:intergenic	30.0%
GCAATGTATTTCATTCCAAA+AGG	+	tig0020524:131550-131569	Msa1382840:CDS	30.0%
AATATAATAGCAGATCCGTA+TGG	-	tig0020524:131735-131754	None:intergenic	30.0%
TCGTAAGATGAACAATTCTT+CGG	-	tig0020524:131796-131815	None:intergenic	30.0%
TTAGAAAATTTGGTTGGCAA+AGG	+	tig0020524:131979-131998	Msa1382840:intron	30.0%
TCACTAACAATTAGCAAACA+AGG	-	tig0020524:132251-132270	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
tig0020524	gene	130362	134136	130362	ID=Msa1382840;Name=Msa1382840
tig0020524	mRNA	130362	134136	130362	ID=Msa1382840-mRNA-1;Parent=Msa1382840;Name=Msa1382840-mRNA-1;_AED=0.10;_eAED=0.10;_QI=128\|0.88\|0.9\|1\|0.88\|0.8\|10\|578\|702
tig0020524	exon	130362	130643	130362	ID=Msa1382840-mRNA-1:exon:8252;Parent=Msa1382840-mRNA-1
tig0020524	exon	130765	130847	130765	ID=Msa1382840-mRNA-1:exon:8253;Parent=Msa1382840-mRNA-1
tig0020524	exon	130985	131252	130985	ID=Msa1382840-mRNA-1:exon:8254;Parent=Msa1382840-mRNA-1
tig0020524	exon	131313	131888	131313	ID=Msa1382840-mRNA-1:exon:8255;Parent=Msa1382840-mRNA-1
tig0020524	exon	131983	132231	131983	ID=Msa1382840-mRNA-1:exon:8256;Parent=Msa1382840-mRNA-1
tig0020524	exon	132324	132487	132324	ID=Msa1382840-mRNA-1:exon:8257;Parent=Msa1382840-mRNA-1
tig0020524	exon	132601	132677	132601	ID=Msa1382840-mRNA-1:exon:8258;Parent=Msa1382840-mRNA-1
tig0020524	exon	132760	132907	132760	ID=Msa1382840-mRNA-1:exon:8259;Parent=Msa1382840-mRNA-1
tig0020524	exon	133078	133227	133078	ID=Msa1382840-mRNA-1:exon:8260;Parent=Msa1382840-mRNA-1
tig0020524	exon	133319	134136	133319	ID=Msa1382840-mRNA-1:exon:8261;Parent=Msa1382840-mRNA-1
tig0020524	five_prime_UTR	130362	130489	130362	ID=Msa1382840-mRNA-1:five_prime_utr;Parent=Msa1382840-mRNA-1
tig0020524	CDS	130490	130643	130490	ID=Msa1382840-mRNA-1:cds;Parent=Msa1382840-mRNA-1
tig0020524	CDS	130765	130847	130765	ID=Msa1382840-mRNA-1:cds;Parent=Msa1382840-mRNA-1
tig0020524	CDS	130985	131252	130985	ID=Msa1382840-mRNA-1:cds;Parent=Msa1382840-mRNA-1
tig0020524	CDS	131313	131888	131313	ID=Msa1382840-mRNA-1:cds;Parent=Msa1382840-mRNA-1
tig0020524	CDS	131983	132231	131983	ID=Msa1382840-mRNA-1:cds;Parent=Msa1382840-mRNA-1
tig0020524	CDS	132324	132487	132324	ID=Msa1382840-mRNA-1:cds;Parent=Msa1382840-mRNA-1
tig0020524	CDS	132601	132677	132601	ID=Msa1382840-mRNA-1:cds;Parent=Msa1382840-mRNA-1
tig0020524	CDS	132760	132907	132760	ID=Msa1382840-mRNA-1:cds;Parent=Msa1382840-mRNA-1
tig0020524	CDS	133078	133227	133078	ID=Msa1382840-mRNA-1:cds;Parent=Msa1382840-mRNA-1
tig0020524	CDS	133319	133558	133319	ID=Msa1382840-mRNA-1:cds;Parent=Msa1382840-mRNA-1
tig0020524	three_prime_UTR	133559	134136	133559	ID=Msa1382840-mRNA-1:three_prime_utr;Parent=Msa1382840-mRNA-1

Gene Sequence

>Msa1382840

ATGAAGTTAATCGGCGACGGTGACGGTGGCCGGAAAGTGTTGGTCGGAGTTAAATTAGATCCCCGTAGCCGTGAATTGCTCACGTGGGCTCTCGTTAAGGTTGCTCAGCCCGGTGACCTTGTTATCGCTCTTCACGTTCTCGACACCGTAACTGAGGGAACATCGTCGTTGTTATCGTTGGTGAAGACTTTGGATTCGGTTCTCGCAGTTTACGAAGGATTCTGCAATTTAAAACAGGTTGATCTTAAATTGAAAGTGTGTAGAGGTGATTCGGTTCGGAAGCTTCTAGTACAAGAGGCTAAAGCGTTAGGCGTTTCAACGGTTATTTTAGGAACTTCCAAATCTCATCACACAATTCGTTCTTCTGCGTGGGTTGCTAAGTATTGTGCCAAGAAATTGCATAAATGTGTTTCTGTTTTCGCCGTTGATAATGGCAAAATTGCTTTCCAAAGAGAGCTACTGCTCAAGGTTTTGCTTCCACACTTTCATTTTCTGCATTTTTTGAAAAAATTACAGTGGTCCTATTTGATTTTTACGAATAAAAGTGTGAAGGATTGTGGAAGTTGTGCTCTGCGCGAGATTTCTGATACCGAATTTAATCAAGGAGAGTTGCTTGATTATTGTGAAACAGAAAATCCGCTTGCTATGGTACCGTTTCAAAAACGTGATGATGAATCTGTGGTGGGTGATGACTCCGTAGTGGGTGATTCGAAACGGATGAAACCTGGTTGGTCACTCATTCGCAATGTATTTCATTCCAAAAGGCATACCGCCAAGTCTTCGCCGAAAAGTACATTTGTTTTTCAAAAGGGAGTACGACATTCCACCAGTCATTCTTCATCTGTAGTCTATCCAGATCATAAACAAATTAATATTGATCCAGTTGATGATTCTGCCCTGGACGGGGAGAGTGGCGCCATTGTGCCATACGGATCTGCTATTATATTACCTCCTCCCACCCTTTGCAGTGACGCCGATAGCCTACCCGAAGAATTGTTCATCTTACGAGATAAGTACTCGTCTTCCTGTAGACTGTATAGTTTGCAGGAACTAGTAGCTGCTACTGTAAACTTCTCATCTGAAAATTTGGTTGGCAAAGGTGGTAGTAGTGTTGTTTACCGAGGATGTCTTTCCGATGGCAAAGAATTGGCAGTGAAAATTTTGAAGCCGTCAGAGAATGTTTTAAAAGAGTTTGCTCAAGAAGTTGAGATTGTTACAACTTTGAATCACAGTAACATAATATCTCTATCTGGTTTTTGTTTAGAGGGAAACCATTTATTACTGGTATATGATTTTTTATCAAGAGGAAGCCTAGAAGAAAACCTTCACGGTAATAAAAAGGACTATAATTCATTTGGCTGGCAAGAGAGGTACCGGGTGGCTGTGGGTGTAGCCGAGGCCTTGGATTATCTGCATAACGGCTGTGCACGATCTGTAATCCATAGGGATGTCAAATCGTCTAATATCCTTCTTTCAGATGATTTTGAGGCTCAGCTCTCAGATTTTGGACTGGCTAGTTGGGGTTCTTCTTCTTCCCAAATTATTTGTACTGATGTTGCTGGAACTTTTGGGTACCTAGCTCCTGAGTACTTCATGCACGGTAGAGTAACTGACAAAATTGATGTATATGCTTTTGGGGTTGTACTGCTTGAGCTTCTATCCAATAGGAAGCCCATTAACAACGAACGCCCAAAGGGTCACGAGAGCCTTGTTATGTGGGCAACATCAGTCATGAAAAGTGGAAAGATTTCCCAGTTGCTTGACCCAAGTCTTGGAAGTGAATACAACAATTGCCAGATCAAGAGAATGGTTTTGGCTGCTACTCTCTGTATTAGACGAGTTCCTAGATTGCGACCTCAAATTGGAGTTATACGGAAACTTCTTCACGGTGATGAAGAAGTAACAAGATGGGCAGAACAAGAAGTTTGTGCACCTGAAACACATGATGGATTTGATGAGGAACTATTTCCAACAAATATTCAGTCCCACCTTAACCTTGCACTGCTGGACTTGGAGGATGATGCAGTTTCTATCAGTAGCACTGAGCAGTGTGTCTCATTGGAAGACTATTTGCGAGGAAGATGGAGTCGCAGTTCAAGTTTTGACTAA

Protein sequence

>Msa1382840

MKLIGDGDGGRKVLVGVKLDPRSRELLTWALVKVAQPGDLVIALHVLDTVTEGTSSLLSLVKTLDSVLAVYEGFCNLKQVDLKLKVCRGDSVRKLLVQEAKALGVSTVILGTSKSHHTIRSSAWVAKYCAKKLHKCVSVFAVDNGKIAFQRELLLKVLLPHFHFLHFLKKLQWSYLIFTNKSVKDCGSCALREISDTEFNQGELLDYCETENPLAMVPFQKRDDESVVGDDSVVGDSKRMKPGWSLIRNVFHSKRHTAKSSPKSTFVFQKGVRHSTSHSSSVVYPDHKQINIDPVDDSALDGESGAIVPYGSAIILPPPTLCSDADSLPEELFILRDKYSSSCRLYSLQELVAATVNFSSENLVGKGGSSVVYRGCLSDGKELAVKILKPSENVLKEFAQEVEIVTTLNHSNIISLSGFCLEGNHLLLVYDFLSRGSLEENLHGNKKDYNSFGWQERYRVAVGVAEALDYLHNGCARSVIHRDVKSSNILLSDDFEAQLSDFGLASWGSSSSQIICTDVAGTFGYLAPEYFMHGRVTDKIDVYAFGVVLLELLSNRKPINNERPKGHESLVMWATSVMKSGKISQLLDPSLGSEYNNCQIKRMVLAATLCIRRVPRLRPQIGVIRKLLHGDEEVTRWAEQEVCAPETHDGFDEELFPTNIQSHLNLALLDLEDDAVSISSTEQCVSLEDYLRGRWSRSSSFD*