AlfalfaGEDB | Msa1388540

M. sativa cultivar zhongmu-4 / Msa1388540

KEGG: -
GO: GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0071704 GO:0140096 GO:1901564
PFAM: PF01453.27

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1388540	XP_003627561.1	96.168	835	29	2	1	832	1	835	0.0	1636

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1388540	sp\|Q39203\|SD22_ARATH	53.240	787	314	16	14	787	20	765	0.0	770

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1388540	G7LBP9	96.168	835	29	2	1	832	1	835	0.0	1636

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0389000	Msa1388540	0.867288	1.528487e-65	-8.615850e-47

Showing 1 to 1 of 1 entries

Previous1Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1388540	MtrunA17_Chr8g0348661	96.168	835	29	2	1	832	1	835	0.0	1636
Msa1388540	MtrunA17_Chr4g0023071	40.047	844	437	21	2	816	11	814	0.0	564
Msa1388540	MtrunA17_Chr2g0323301	40.686	816	411	23	3	782	10	788	0.0	559
Msa1388540	MtrunA17_Chr2g0323341	39.580	667	352	16	134	779	62	698	1.02e-150	458
Msa1388540	MtrunA17_Chr1g0202331	33.967	842	435	25	15	779	28	825	4.65e-130	410
Msa1388540	MtrunA17_Chr3g0137741	35.924	785	441	24	20	785	46	787	5.51e-130	408
Msa1388540	MtrunA17_Chr2g0318171	35.090	778	422	27	18	773	47	763	1.10e-125	396
Msa1388540	MtrunA17_Chr2g0314611	34.760	771	420	26	27	773	56	767	2.94e-122	387
Msa1388540	MtrunA17_Chr2g0333091	33.705	807	461	22	27	810	51	806	2.92e-120	382
Msa1388540	MtrunA17_Chr1g0149381	34.452	775	426	21	27	770	58	781	6.62e-120	382

Showing 1 to 10 of 507 entries

Previous1 2 3 4 5…51Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1388540	AT4G00340.1	54.130	787	328	17	14	787	20	786	0.0	786
Msa1388540	AT4G00340.2	52.994	785	319	15	14	787	20	765	0.0	768
Msa1388540	AT2G19130.1	42.553	799	394	23	14	782	25	788	0.0	573
Msa1388540	AT5G24080.2	34.289	872	456	32	1	797	13	842	2.70e-134	421
Msa1388540	AT4G32300.1	35.360	806	452	26	27	806	48	810	1.36e-125	397
Msa1388540	AT1G34300.1	35.939	793	422	29	43	794	39	786	2.71e-119	380
Msa1388540	AT5G24080.3	34.899	745	389	26	117	797	3	715	7.52e-117	372
Msa1388540	AT5G24080.1	34.899	745	389	26	117	797	3	715	7.52e-117	372
Msa1388540	AT4G27290.2	33.054	835	450	35	1	772	7	795	3.28e-113	365
Msa1388540	AT4G21380.1	31.196	811	474	26	13	771	32	810	9.78e-111	358

Showing 1 to 10 of 500 entries

Previous1 2 3 4 5…50Next

Find 261 sgRNAs with CRISPR-Local

Find 309 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACCCATTTCATCTCTCAC+CGG	0.586106	tig0021145:+7289	Msa1388540:CDS
AAACTTGGGCATGGTGGGTT+TGG	0.267111	tig0021145:+8534	Msa1388540:CDS
AAAGATAGTAACGAGGTTGT+TGG	0.484243	tig0021145:-7210	None:intergenic
AAAGCTGATGTTTACAGTTA+TGG	0.337919	tig0021145:+9053	Msa1388540:CDS
AAATGATGTTTGGAGAAGGG+AGG	0.631411	tig0021145:-7249	None:intergenic
AAATGTATATAACATTGAGG+AGG	0.701749	tig0021145:+9244	Msa1388540:CDS
AACAAATTCAGTTGAGGAAG+GGG	0.443495	tig0021145:-7397	None:intergenic
AACACCTTCAAATTCAACAT+AGG	0.610681	tig0021145:-8468	None:intergenic
AACTCTTTCTCCCCACCACC+CGG	0.593763	tig0021145:-8618	None:intergenic
AACTTGGGCATGGTGGGTTT+GGG	0.292203	tig0021145:+8535	Msa1388540:CDS

Showing 1 to 10 of 261 entries

Previous1 2 3 4 5…27Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
TAACAAATTCAGTTGAGGAA+GGG	-	tig0021145:7401-7420	None:intergenic	30.0%
AGTGAATAAAAACCATTACC+AGG	-	tig0021145:7562-7581	None:intergenic	30.0%
TTGAATTCTTGTGATTGTGT+TGG	+	tig0021145:8147-8166	Msa1388540:CDS	30.0%
TGTTCCTATGTTGAATTTGA+AGG	+	tig0021145:8464-8483	Msa1388540:CDS	30.0%
AACACCTTCAAATTCAACAT+AGG	-	tig0021145:8471-8490	None:intergenic	30.0%
AAAGCTGATGTTTACAGTTA+TGG	+	tig0021145:9053-9072	Msa1388540:CDS	30.0%
ATGACATTACTAGAACTTGT+AGG	+	tig0021145:9077-9096	Msa1388540:CDS	30.0%
AAAGATAGTAACGAGGTTGT+TGG	-	tig0021145:7213-7232	None:intergenic	35.0%
AACAAATTCAGTTGAGGAAG+GGG	-	tig0021145:7400-7419	None:intergenic	35.0%
CTAACAAATTCAGTTGAGGA+AGG	-	tig0021145:7402-7421	None:intergenic	35.0%

Showing 1 to 10 of 309 entries

Previous1 2 3 4 5…31Next

Chromosome	Type	Strat	End	Strand	Name
tig0021145	gene	7073	9571	7073	ID=Msa1388540;Name=Msa1388540
tig0021145	mRNA	7073	9571	7073	ID=Msa1388540-mRNA-1;Parent=Msa1388540;Name=Msa1388540-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0\|-1\|0\|1\|-1\|1\|1\|0\|832
tig0021145	exon	7073	9571	7073	ID=Msa1388540-mRNA-1:exon:11170;Parent=Msa1388540-mRNA-1
tig0021145	CDS	7073	9571	7073	ID=Msa1388540-mRNA-1:cds;Parent=Msa1388540-mRNA-1

Gene Sequence

>Msa1388540

ATGTTCCTCCTTTTCCTCTTCCTTCTCTTACCTCACTTCACTCTTTCCAACACAATCATTTTATCACAAAACCAAACACTCTTAAGCCAAAACCAAACCTTCCAACTTGGTCTCTTCAACTTTGAACAACAAAACAACCAACAACCTCGTTACTATCTTTCCATCCGTTTCAATTCCCTCCCTTCTCCAAACATCATTTGGGTCGCAAACCGGAATAAACCCATTTCATCTCTCACCGGTTCAGCTCTTCAATTAACCCGAACCGGTCAACTACTCTTAACCCAAAACGACACCGTTTTATGGCAAACGAAAAACACTCTTGAACCCCTTCCTCAACTGAATTTGTTAGAAAACGGAAATTTAGTTCTGGTGACTAAAAACGGTGTCGTTTTATGGCAAAGCTTTGATGAACCAACTGACACGTGGCTACCAGGTATGAACTTAACTAGGGTTCATAACTTACTCTCGTGGCGCACGTTAACGAATCCTGGTAATGGTTTTTATTCACTGCGGTTAAAACCACCGAACTACGGTGAATTTGAGCTTGTTTTTAATGGCACCGTTTCGTATTGGGACACCGGTAAATGGACTGGTGGAGCATTTACCGGTGTTCCTGAGATGACGGTGCCTATTTATAGATTTGATTTTGAAGATGCTTATTCGCCAATGGCGTCGTTCGGATTCACCGAACGGGCTTTGGAGAACGGTGTTAGACCGCCTACGATGTTTAGGGTTGAGCCGTTTGGTCAGATGAGGCAGTATACGTGGTCGAGTCAGGCGGGTTCATGGAATATGTTTTGGTCTAGACCGGAGTCGATTTGTTCGGTTAAGGGTGTTTGTGGGAAGTTTGGTGTTTGTGTTGGTGAGGTTTTGAGGGTTTGTGAGTGTGTTAAGGGTTTTGTGGCGGTGGACAGTGGCGGATGGAGTTCGGGGGATTATTCGGGTGGGTGTTGGAGAGGGGAGAGGGTTTGTGATCATGGTGATGGGTTTGAGGATTTTGGTGTTGTTAGGTTTGGTTTTGAGAATGTGAGTAGTTTTAAGGCTAAATCTAGGAGTTTGTGTGAGCGTGGTTGTTTGAATTCTTGTGATTGTGTTGGTTTGAGTTTTGATGAAAAGAGTGGGTTTTGTAGGAATTTTTTTGGGTCTCTTTTTGATTTTCAAAATTTGACTGCTTTGGAGAGTGGTGGTGGTGGGAATGTGTTGTATGTTAGGGTTCCTGGTGAGGTATCTGAGGGGAAGAATCAGAGGTTGAAGGGTAAGGTTTTGAGTGGTGTTGTTATTGGATGTGTTTTGTTTTTGGTTTTGGTTTTGGGTGTGGTTGCGGTGACTTTGGTGGTGTTGGCGAAGAGGAAGCGATTGAAGAAGGAGAATGGGTTGGAGGAAGATGGGTTTGTTCCTATGTTGAATTTGAAGGTGTTTTCTTACAAGGAGCTTCAATTGGCGACTCGAGGGTTTTCTGAGAAACTTGGGCATGGTGGGTTTGGGACGGTGTTTCAAGGGGAGTTGAGTGACTCTACGGTTGTTGCTGTGAAGCGTTTGGAGAGGCCGGGTGGTGGGGAGAAAGAGTTTAGGGCCGAGGTTTCAACAATTGGCAACATTCAGCATGTTAATCTTGTGAGGTTAAGAGGTTTTTGCTCTGAGAATGCACATCGACTTTTGGTTTATGAGTACATGCCGAATGGTGCCCTTAGCGCTTATCTGCGAAAGGAGGGGCCTTGCTTGAGCTGGGATGTTAGGCTCAGGGTAGCAATAGGAACTGCTAAAGGCATAGCATATTTACATGAAGAATGTAGAAGTTGCATTATACATTGTGATATCAAACCTGAAAATATTCTTTTGGATAGTGATTTCACCGCCAAGGTTTCTGATTTTGGATTGGCAAAGCTAATTGGTAGGGACTTCAGCAGGGTGTTGGCAACCATGAGAGGTACTTTGGGATATGTAGCACCGGAGTGGATTTCTGGCGTTGAAATTACTACTAAAGCTGATGTTTACAGTTATGGAATGACATTACTAGAACTTGTAGGCGGTCGCCGGAATGTCGAGGCACCACCTTCGTCTGGTGATAGAAAGAGTGATTGTGAGACAGGAGACAGGTGGTTCTTTCCTCCATGGGCAGCGCAGATGATAATCGATGATAATGTGGCTGCTGTGGTTGATAAGAAGCTTGGAAATGTATATAACATTGAGGAGGCTAAGAGGGTTGCTCTGGTAGCAGTTTGGTGCATTCAGGATGATGAGGCAATGAGACCAACCATGAGTATGGTGGTGAAAATGTTAGAAGGGTTAGTGGAGGTGTCTCTTCCACCGCCACCTAAGTTGCTACAAGCATTGGTTACCGGAGAGTCCTTTCGTGGTGTCAAGGTTGATTCAAGTAATGCGGTTTCTACCGCTGGCAGTTCATCTTTCTGCGACAACATGGAAGTGTCAGTCGCTGATTCAGAATCATGTATAGGAGAAGTTTTTTCCCCACCGGATGGCATTGTCAATGTTCGATAA

Protein sequence

>Msa1388540

MFLLFLFLLLPHFTLSNTIILSQNQTLLSQNQTFQLGLFNFEQQNNQQPRYYLSIRFNSLPSPNIIWVANRNKPISSLTGSALQLTRTGQLLLTQNDTVLWQTKNTLEPLPQLNLLENGNLVLVTKNGVVLWQSFDEPTDTWLPGMNLTRVHNLLSWRTLTNPGNGFYSLRLKPPNYGEFELVFNGTVSYWDTGKWTGGAFTGVPEMTVPIYRFDFEDAYSPMASFGFTERALENGVRPPTMFRVEPFGQMRQYTWSSQAGSWNMFWSRPESICSVKGVCGKFGVCVGEVLRVCECVKGFVAVDSGGWSSGDYSGGCWRGERVCDHGDGFEDFGVVRFGFENVSSFKAKSRSLCERGCLNSCDCVGLSFDEKSGFCRNFFGSLFDFQNLTALESGGGGNVLYVRVPGEVSEGKNQRLKGKVLSGVVIGCVLFLVLVLGVVAVTLVVLAKRKRLKKENGLEEDGFVPMLNLKVFSYKELQLATRGFSEKLGHGGFGTVFQGELSDSTVVAVKRLERPGGGEKEFRAEVSTIGNIQHVNLVRLRGFCSENAHRLLVYEYMPNGALSAYLRKEGPCLSWDVRLRVAIGTAKGIAYLHEECRSCIIHCDIKPENILLDSDFTAKVSDFGLAKLIGRDFSRVLATMRGTLGYVAPEWISGVEITTKADVYSYGMTLLELVGGRRNVEAPPSSGDRKSDCETGDRWFFPPWAAQMIIDDNVAAVVDKKLGNVYNIEEAKRVALVAVWCIQDDEAMRPTMSMVVKMLEGLVEVSLPPPPKLLQALVTGESFRGVKVDSSNAVSTAGSSSFCDNMEVSVADSESCIGEVFSPPDGIVNVR*