Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1392500 | XP_003612805.1 | 96.703 | 91 | 3 | 0 | 13 | 103 | 117 | 207 | 2.65e-54 | 181 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1392500 | sp|Q9FVR6|Y1222_ARATH | 66.071 | 112 | 29 | 1 | 1 | 103 | 90 | 201 | 8.89e-47 | 154 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1392500 | G7KCB8 | 96.703 | 91 | 3 | 0 | 13 | 103 | 117 | 207 | 1.26e-54 | 181 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0946900 | Msa1392500 | 0.841514 | 4.537230e-58 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1392500 | MtrunA17_Chr5g0410681 | 96.703 | 91 | 3 | 0 | 13 | 103 | 117 | 207 | 2.43e-58 | 181 |
| Msa1392500 | MtrunA17_Chr3g0136661 | 53.086 | 81 | 37 | 1 | 23 | 103 | 115 | 194 | 4.05e-22 | 87.8 |
| Msa1392500 | MtrunA17_Chr6g0452121 | 87.500 | 40 | 5 | 0 | 15 | 54 | 4 | 43 | 1.31e-19 | 75.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1392500 | AT1G32220.1 | 66.071 | 112 | 29 | 1 | 1 | 103 | 90 | 201 | 9.04e-48 | 154 |
| Msa1392500 | AT5G10730.1 | 46.154 | 91 | 44 | 2 | 12 | 102 | 109 | 194 | 3.68e-20 | 82.8 |
| Msa1392500 | AT5G15910.2 | 50.649 | 77 | 37 | 1 | 26 | 102 | 63 | 138 | 6.71e-19 | 78.6 |
| Msa1392500 | AT5G15910.1 | 50.649 | 77 | 37 | 1 | 26 | 102 | 104 | 179 | 7.12e-19 | 79.3 |
Find 22 sgRNAs with CRISPR-Local
Find 160 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AACTGAGATCAATATGAATT+TGG | 0.138307 | tig0021514:+66721 | None:intergenic |
| TTCTGAAAGAATAGGGAATT+TGG | 0.232650 | tig0021514:+66619 | None:intergenic |
| GTCTCAACCCTCGGAGGTTT+TGG | 0.299923 | tig0021514:-67302 | Msa1392500:CDS |
| AACTGGGACGAAGTACTTCC+TGG | 0.372764 | tig0021514:-67338 | Msa1392500:CDS |
| ACTGAGATCAATATGAATTT+GGG | 0.389375 | tig0021514:+66722 | None:intergenic |
| CACTCAGATTCTGAAAGAAT+AGG | 0.389610 | tig0021514:+66611 | None:intergenic |
| CCTCCTACCTTTCTACTAGA+AGG | 0.393830 | tig0021514:-67954 | Msa1392500:intron |
| GTAAATGCTGCAAACGAATA+TGG | 0.416823 | tig0021514:-67230 | Msa1392500:intron |
| CTTTCATTGGGGTACTTCAC+AGG | 0.419164 | tig0021514:-66671 | Msa1392500:CDS |
| ACTCAGATTCTGAAAGAATA+GGG | 0.420667 | tig0021514:+66612 | None:intergenic |
| TCTTTCAGAATCTGAGTGAA+TGG | 0.452610 | tig0021514:-66606 | Msa1392500:exon |
| CTTCTAACCTTCTAGTAGAA+AGG | 0.486036 | tig0021514:+67947 | None:intergenic |
| GAGACAACTGCAGTAGCTCC+AGG | 0.506633 | tig0021514:+67320 | None:intergenic |
| GAACAAATGAGTAAGATTAA+CGG | 0.549035 | tig0021514:-67272 | Msa1392500:CDS |
| ACTGCAGTTGTCTCAACCCT+CGG | 0.574479 | tig0021514:-67311 | Msa1392500:CDS |
| CTCGCTACCAAAACCTCCGA+GGG | 0.612537 | tig0021514:+67295 | None:intergenic |
| TAACCTTCTAGTAGAAAGGT+AGG | 0.613210 | tig0021514:+67951 | None:intergenic |
| TAACGGCGAGGCTAATGTTG+TGG | 0.613394 | tig0021514:-67255 | Msa1392500:CDS |
| CCTTCTAGTAGAAAGGTAGG+AGG | 0.623552 | tig0021514:+67954 | None:intergenic |
| CCTCGCTACCAAAACCTCCG+AGG | 0.646053 | tig0021514:+67294 | None:intergenic |
| GCAGTTGTCTCAACCCTCGG+AGG | 0.692364 | tig0021514:-67308 | Msa1392500:CDS |
| AATGAGTAAGATTAACGGCG+AGG | 0.694649 | tig0021514:-67267 | Msa1392500:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATATAGTGAATTAATTGAT+AGG | - | tig0021514:66667-66686 | Msa1392500:CDS | 15.0% |
| !!! | TTTAACTCAAATTTTCTTAA+TGG | + | tig0021514:67069-67088 | None:intergenic | 15.0% |
| !! | TATATAGTGAATTAATTGAT+AGG | - | tig0021514:66667-66686 | Msa1392500:CDS | 15.0% |
| !!! | TTTAACTCAAATTTTCTTAA+TGG | + | tig0021514:67069-67088 | None:intergenic | 15.0% |
| !! | TACAATTTAGTTAGTTAGTT+AGG | + | tig0021514:66770-66789 | None:intergenic | 20.0% |
| !!! | AGATGTTTTTTATGTAAACT+GGG | - | tig0021514:67174-67193 | Msa1392500:intron | 20.0% |
| !! | ACAAAAATGTAAAGAAACAT+TGG | + | tig0021514:67610-67629 | None:intergenic | 20.0% |
| !!! | ATGTTTCTTTACATTTTTGT+TGG | - | tig0021514:67610-67629 | Msa1392500:intron | 20.0% |
| !! | TGTATATATACAAACAAAGA+TGG | - | tig0021514:67639-67658 | Msa1392500:intron | 20.0% |
| !! | TATATGATGTATATTATGTC+TGG | - | tig0021514:67679-67698 | Msa1392500:intron | 20.0% |
| !! | ATATGATGTATATTATGTCT+GGG | - | tig0021514:67680-67699 | Msa1392500:intron | 20.0% |
| !!! | CAGTGATTATTTTTTTACAT+AGG | + | tig0021514:67949-67968 | None:intergenic | 20.0% |
| !! | TACAATTTAGTTAGTTAGTT+AGG | + | tig0021514:66770-66789 | None:intergenic | 20.0% |
| !!! | AGATGTTTTTTATGTAAACT+GGG | - | tig0021514:67174-67193 | Msa1392500:intron | 20.0% |
| !! | ACAAAAATGTAAAGAAACAT+TGG | + | tig0021514:67610-67629 | None:intergenic | 20.0% |
| !!! | ATGTTTCTTTACATTTTTGT+TGG | - | tig0021514:67610-67629 | Msa1392500:intron | 20.0% |
| !! | TGTATATATACAAACAAAGA+TGG | - | tig0021514:67639-67658 | Msa1392500:intron | 20.0% |
| !! | TATATGATGTATATTATGTC+TGG | - | tig0021514:67679-67698 | Msa1392500:intron | 20.0% |
| !! | ATATGATGTATATTATGTCT+GGG | - | tig0021514:67680-67699 | Msa1392500:intron | 20.0% |
| !!! | CAGTGATTATTTTTTTACAT+AGG | + | tig0021514:67949-67968 | None:intergenic | 20.0% |
| !! | TGACTGAGATTTTGTTAAAA+TGG | - | tig0021514:66962-66981 | Msa1392500:intron | 25.0% |
| !! | CTCAAATTTTCTTAATGGTT+TGG | + | tig0021514:67064-67083 | None:intergenic | 25.0% |
| !!! | GAGATGTTTTTTATGTAAAC+TGG | - | tig0021514:67173-67192 | Msa1392500:intron | 25.0% |
| ! | GAACAAATGAGTAAGATTAA+CGG | - | tig0021514:67256-67275 | Msa1392500:CDS | 25.0% |
| ! | TGCTTATATATGACAGTTAA+TGG | + | tig0021514:67427-67446 | None:intergenic | 25.0% |
| ! | AAGTTGAATGTTTACAGATA+TGG | - | tig0021514:67504-67523 | Msa1392500:intron | 25.0% |
| ! | AAATGTAAAGAAACATTGGA+AGG | + | tig0021514:67606-67625 | None:intergenic | 25.0% |
| ! | ACTGAGATCAATATGAATTT+GGG | + | tig0021514:67809-67828 | None:intergenic | 25.0% |
| ! | AACTGAGATCAATATGAATT+TGG | + | tig0021514:67810-67829 | None:intergenic | 25.0% |
| !! | TGACTGAGATTTTGTTAAAA+TGG | - | tig0021514:66962-66981 | Msa1392500:intron | 25.0% |
| !! | CTCAAATTTTCTTAATGGTT+TGG | + | tig0021514:67064-67083 | None:intergenic | 25.0% |
| !!! | GAGATGTTTTTTATGTAAAC+TGG | - | tig0021514:67173-67192 | Msa1392500:intron | 25.0% |
| ! | GAACAAATGAGTAAGATTAA+CGG | - | tig0021514:67256-67275 | Msa1392500:CDS | 25.0% |
| ! | TGCTTATATATGACAGTTAA+TGG | + | tig0021514:67427-67446 | None:intergenic | 25.0% |
| ! | AAGTTGAATGTTTACAGATA+TGG | - | tig0021514:67504-67523 | Msa1392500:intron | 25.0% |
| ! | AAATGTAAAGAAACATTGGA+AGG | + | tig0021514:67606-67625 | None:intergenic | 25.0% |
| ! | ACTGAGATCAATATGAATTT+GGG | + | tig0021514:67809-67828 | None:intergenic | 25.0% |
| ! | AACTGAGATCAATATGAATT+TGG | + | tig0021514:67810-67829 | None:intergenic | 25.0% |
| TGATATGTAGATTGTAGTCT+TGG | - | tig0021514:66808-66827 | Msa1392500:intron | 30.0% | |
| GATATGTAGATTGTAGTCTT+GGG | - | tig0021514:66809-66828 | Msa1392500:intron | 30.0% | |
| TAGAAGTCATAAGCTTAAAC+AGG | - | tig0021514:66865-66884 | Msa1392500:intron | 30.0% | |
| ACACAAAAACAAAAGAAGTG+TGG | + | tig0021514:66939-66958 | None:intergenic | 30.0% | |
| ! | GAGATTTTGTTAAAATGGTC+AGG | - | tig0021514:66967-66986 | Msa1392500:intron | 30.0% |
| !! | GAATTTGAGTATCGTTTTTC+TGG | - | tig0021514:67119-67138 | Msa1392500:intron | 30.0% |
| AATGTTTACAGATATGGAGA+TGG | - | tig0021514:67510-67529 | Msa1392500:intron | 30.0% | |
| ! | TTCTTTACATTTTTGTTGGC+TGG | - | tig0021514:67614-67633 | Msa1392500:intron | 30.0% |
| !! | ACCATCGTTTTTACTTTCAT+TGG | - | tig0021514:67844-67863 | Msa1392500:intron | 30.0% |
| !! | CCATCGTTTTTACTTTCATT+GGG | - | tig0021514:67845-67864 | Msa1392500:intron | 30.0% |
| !! | CATCGTTTTTACTTTCATTG+GGG | - | tig0021514:67846-67865 | Msa1392500:intron | 30.0% |
| AAAAAGAAAAGCAGAATCTG+AGG | - | tig0021514:67880-67899 | Msa1392500:intron | 30.0% | |
| ! | TTCTGAAAGAATAGGGAATT+TGG | + | tig0021514:67912-67931 | None:intergenic | 30.0% |
| ! | ACTCAGATTCTGAAAGAATA+GGG | + | tig0021514:67919-67938 | None:intergenic | 30.0% |
| TGATATGTAGATTGTAGTCT+TGG | - | tig0021514:66808-66827 | Msa1392500:intron | 30.0% | |
| GATATGTAGATTGTAGTCTT+GGG | - | tig0021514:66809-66828 | Msa1392500:intron | 30.0% | |
| TAGAAGTCATAAGCTTAAAC+AGG | - | tig0021514:66865-66884 | Msa1392500:intron | 30.0% | |
| ACACAAAAACAAAAGAAGTG+TGG | + | tig0021514:66939-66958 | None:intergenic | 30.0% | |
| ! | GAGATTTTGTTAAAATGGTC+AGG | - | tig0021514:66967-66986 | Msa1392500:intron | 30.0% |
| !! | GAATTTGAGTATCGTTTTTC+TGG | - | tig0021514:67119-67138 | Msa1392500:intron | 30.0% |
| AATGTTTACAGATATGGAGA+TGG | - | tig0021514:67510-67529 | Msa1392500:intron | 30.0% | |
| ! | TTCTTTACATTTTTGTTGGC+TGG | - | tig0021514:67614-67633 | Msa1392500:intron | 30.0% |
| !! | ACCATCGTTTTTACTTTCAT+TGG | - | tig0021514:67844-67863 | Msa1392500:intron | 30.0% |
| !! | CCATCGTTTTTACTTTCATT+GGG | - | tig0021514:67845-67864 | Msa1392500:intron | 30.0% |
| !! | CATCGTTTTTACTTTCATTG+GGG | - | tig0021514:67846-67865 | Msa1392500:intron | 30.0% |
| AAAAAGAAAAGCAGAATCTG+AGG | - | tig0021514:67880-67899 | Msa1392500:intron | 30.0% | |
| ! | TTCTGAAAGAATAGGGAATT+TGG | + | tig0021514:67912-67931 | None:intergenic | 30.0% |
| ! | ACTCAGATTCTGAAAGAATA+GGG | + | tig0021514:67919-67938 | None:intergenic | 30.0% |
| TAACCTTCTAGTAGAAAGGT+AGG | + | tig0021514:66580-66599 | None:intergenic | 35.0% | |
| CTTCTAACCTTCTAGTAGAA+AGG | + | tig0021514:66584-66603 | None:intergenic | 35.0% | |
| GTTCTACTTACTCAGATTCA+TGG | - | tig0021514:66992-67011 | Msa1392500:intron | 35.0% | |
| AGAGGGAGACAAAAAATCTA+TGG | - | tig0021514:67037-67056 | Msa1392500:intron | 35.0% | |
| GAGGGAGACAAAAAATCTAT+GGG | - | tig0021514:67038-67057 | Msa1392500:intron | 35.0% | |
| AAAAACATCTCCTGCACATT+AGG | + | tig0021514:67164-67183 | None:intergenic | 35.0% | |
| GTAAATGCTGCAAACGAATA+TGG | - | tig0021514:67298-67317 | Msa1392500:CDS | 35.0% | |
| CAAAATAACGCTCAATGAGA+TGG | + | tig0021514:67328-67347 | None:intergenic | 35.0% | |
| !! | GTTGTTATGTGCTGTTTACA+AGG | - | tig0021514:67384-67403 | Msa1392500:intron | 35.0% |
| CTAACTGCTAAGGCTATATT+TGG | + | tig0021514:67581-67600 | None:intergenic | 35.0% | |
| CAAAGATGGTTTGATGCTTA+TGG | - | tig0021514:67653-67672 | Msa1392500:intron | 35.0% | |
| CCCAATGAAAGTAAAAACGA+TGG | + | tig0021514:67848-67867 | None:intergenic | 35.0% | |
| ! | CACTCAGATTCTGAAAGAAT+AGG | + | tig0021514:67920-67939 | None:intergenic | 35.0% |
| TCTTTCAGAATCTGAGTGAA+TGG | - | tig0021514:67922-67941 | Msa1392500:intron | 35.0% | |
| TAACCTTCTAGTAGAAAGGT+AGG | + | tig0021514:66580-66599 | None:intergenic | 35.0% | |
| CTTCTAACCTTCTAGTAGAA+AGG | + | tig0021514:66584-66603 | None:intergenic | 35.0% | |
| GTTCTACTTACTCAGATTCA+TGG | - | tig0021514:66992-67011 | Msa1392500:intron | 35.0% | |
| AGAGGGAGACAAAAAATCTA+TGG | - | tig0021514:67037-67056 | Msa1392500:intron | 35.0% | |
| GAGGGAGACAAAAAATCTAT+GGG | - | tig0021514:67038-67057 | Msa1392500:intron | 35.0% | |
| AAAAACATCTCCTGCACATT+AGG | + | tig0021514:67164-67183 | None:intergenic | 35.0% | |
| GTAAATGCTGCAAACGAATA+TGG | - | tig0021514:67298-67317 | Msa1392500:CDS | 35.0% | |
| CAAAATAACGCTCAATGAGA+TGG | + | tig0021514:67328-67347 | None:intergenic | 35.0% | |
| !! | GTTGTTATGTGCTGTTTACA+AGG | - | tig0021514:67384-67403 | Msa1392500:intron | 35.0% |
| CTAACTGCTAAGGCTATATT+TGG | + | tig0021514:67581-67600 | None:intergenic | 35.0% | |
| CAAAGATGGTTTGATGCTTA+TGG | - | tig0021514:67653-67672 | Msa1392500:intron | 35.0% | |
| CCCAATGAAAGTAAAAACGA+TGG | + | tig0021514:67848-67867 | None:intergenic | 35.0% | |
| ! | CACTCAGATTCTGAAAGAAT+AGG | + | tig0021514:67920-67939 | None:intergenic | 35.0% |
| TCTTTCAGAATCTGAGTGAA+TGG | - | tig0021514:67922-67941 | Msa1392500:intron | 35.0% | |
| ! | ATGTAGATTGTAGTCTTGGG+AGG | - | tig0021514:66812-66831 | Msa1392500:intron | 40.0% |
| CTCAGATTCATGGATAGTGT+TGG | - | tig0021514:67002-67021 | Msa1392500:intron | 40.0% | |
| !! | GGATAGTGTTGGTACTACAT+AGG | - | tig0021514:67013-67032 | Msa1392500:intron | 40.0% |
| AATGAGTAAGATTAACGGCG+AGG | - | tig0021514:67261-67280 | Msa1392500:CDS | 40.0% | |
| AGCACATAACAACGCTCTAA+AGG | + | tig0021514:67377-67396 | None:intergenic | 40.0% | |
| TGAATTTGGGAATTCCTGCA+AGG | + | tig0021514:67796-67815 | None:intergenic | 40.0% | |
| ! | ATGTAGATTGTAGTCTTGGG+AGG | - | tig0021514:66812-66831 | Msa1392500:intron | 40.0% |
| CTCAGATTCATGGATAGTGT+TGG | - | tig0021514:67002-67021 | Msa1392500:intron | 40.0% | |
| !! | GGATAGTGTTGGTACTACAT+AGG | - | tig0021514:67013-67032 | Msa1392500:intron | 40.0% |
| AATGAGTAAGATTAACGGCG+AGG | - | tig0021514:67261-67280 | Msa1392500:CDS | 40.0% | |
| AGCACATAACAACGCTCTAA+AGG | + | tig0021514:67377-67396 | None:intergenic | 40.0% | |
| TGAATTTGGGAATTCCTGCA+AGG | + | tig0021514:67796-67815 | None:intergenic | 40.0% | |
| CCTTCTAGTAGAAAGGTAGG+AGG | + | tig0021514:66577-66596 | None:intergenic | 45.0% | |
| CCTCCTACCTTTCTACTAGA+AGG | - | tig0021514:66574-66593 | Msa1392500:three_prime_UTR | 45.0% | |
| !! | ATGCAAGGCAGAAGTATCCA+AGG | - | tig0021514:66839-66858 | Msa1392500:intron | 45.0% |
| !! | TGCAAGGCAGAAGTATCCAA+GGG | - | tig0021514:66840-66859 | Msa1392500:intron | 45.0% |
| GCTTATGACTTCTATGCCCT+TGG | + | tig0021514:66859-66878 | None:intergenic | 45.0% | |
| AAGTGTGGAAGAGATGAGAC+GGG | + | tig0021514:66924-66943 | None:intergenic | 45.0% | |
| GAAGTGTGGAAGAGATGAGA+CGG | + | tig0021514:66925-66944 | None:intergenic | 45.0% | |
| TGTTGGTACTACATAGGCAG+AGG | - | tig0021514:67019-67038 | Msa1392500:intron | 45.0% | |
| GTTGGTACTACATAGGCAGA+GGG | - | tig0021514:67020-67039 | Msa1392500:intron | 45.0% | |
| CAGTGTTATGCCTAATGTGC+AGG | - | tig0021514:67151-67170 | Msa1392500:intron | 45.0% | |
| !! | TTGGAAGGTGCTAACTGCTA+AGG | + | tig0021514:67591-67610 | None:intergenic | 45.0% |
| TGAGTCGTGAATAGCACATC+TGG | + | tig0021514:67757-67776 | None:intergenic | 45.0% | |
| ! | CAGCTGTTCTTTTACCTTGC+AGG | - | tig0021514:67779-67798 | Msa1392500:intron | 45.0% |
| ! | CTTTCATTGGGGTACTTCAC+AGG | - | tig0021514:67857-67876 | Msa1392500:intron | 45.0% |
| CCTTCTAGTAGAAAGGTAGG+AGG | + | tig0021514:66577-66596 | None:intergenic | 45.0% | |
| CCTCCTACCTTTCTACTAGA+AGG | - | tig0021514:66574-66593 | Msa1392500:three_prime_UTR | 45.0% | |
| !! | ATGCAAGGCAGAAGTATCCA+AGG | - | tig0021514:66839-66858 | Msa1392500:intron | 45.0% |
| !! | TGCAAGGCAGAAGTATCCAA+GGG | - | tig0021514:66840-66859 | Msa1392500:intron | 45.0% |
| GCTTATGACTTCTATGCCCT+TGG | + | tig0021514:66859-66878 | None:intergenic | 45.0% | |
| AAGTGTGGAAGAGATGAGAC+GGG | + | tig0021514:66924-66943 | None:intergenic | 45.0% | |
| GAAGTGTGGAAGAGATGAGA+CGG | + | tig0021514:66925-66944 | None:intergenic | 45.0% | |
| TGTTGGTACTACATAGGCAG+AGG | - | tig0021514:67019-67038 | Msa1392500:intron | 45.0% | |
| GTTGGTACTACATAGGCAGA+GGG | - | tig0021514:67020-67039 | Msa1392500:intron | 45.0% | |
| CAGTGTTATGCCTAATGTGC+AGG | - | tig0021514:67151-67170 | Msa1392500:intron | 45.0% | |
| !! | TTGGAAGGTGCTAACTGCTA+AGG | + | tig0021514:67591-67610 | None:intergenic | 45.0% |
| TGAGTCGTGAATAGCACATC+TGG | + | tig0021514:67757-67776 | None:intergenic | 45.0% | |
| ! | CAGCTGTTCTTTTACCTTGC+AGG | - | tig0021514:67779-67798 | Msa1392500:intron | 45.0% |
| ! | CTTTCATTGGGGTACTTCAC+AGG | - | tig0021514:67857-67876 | Msa1392500:intron | 45.0% |
| GTCTTGGGAGGCAATATGCA+AGG | - | tig0021514:66824-66843 | Msa1392500:intron | 50.0% | |
| AGTGTGGAAGAGATGAGACG+GGG | + | tig0021514:66923-66942 | None:intergenic | 50.0% | |
| ! | AACTGGGACGAAGTACTTCC+TGG | - | tig0021514:67190-67209 | Msa1392500:intron | 50.0% |
| ACTGCAGTTGTCTCAACCCT+CGG | - | tig0021514:67217-67236 | Msa1392500:intron | 50.0% | |
| TAACGGCGAGGCTAATGTTG+TGG | - | tig0021514:67273-67292 | Msa1392500:CDS | 50.0% | |
| GTCTTGGGAGGCAATATGCA+AGG | - | tig0021514:66824-66843 | Msa1392500:intron | 50.0% | |
| AGTGTGGAAGAGATGAGACG+GGG | + | tig0021514:66923-66942 | None:intergenic | 50.0% | |
| ! | AACTGGGACGAAGTACTTCC+TGG | - | tig0021514:67190-67209 | Msa1392500:intron | 50.0% |
| ACTGCAGTTGTCTCAACCCT+CGG | - | tig0021514:67217-67236 | Msa1392500:intron | 50.0% | |
| TAACGGCGAGGCTAATGTTG+TGG | - | tig0021514:67273-67292 | Msa1392500:CDS | 50.0% | |
| ! | AGAGATGAGACGGGGGTATG+TGG | + | tig0021514:66915-66934 | None:intergenic | 55.0% |
| GTGTGGAAGAGATGAGACGG+GGG | + | tig0021514:66922-66941 | None:intergenic | 55.0% | |
| GAGACAACTGCAGTAGCTCC+AGG | + | tig0021514:67211-67230 | None:intergenic | 55.0% | |
| ! | GTCTCAACCCTCGGAGGTTT+TGG | - | tig0021514:67226-67245 | Msa1392500:intron | 55.0% |
| CTCGCTACCAAAACCTCCGA+GGG | + | tig0021514:67236-67255 | None:intergenic | 55.0% | |
| ! | AGAGATGAGACGGGGGTATG+TGG | + | tig0021514:66915-66934 | None:intergenic | 55.0% |
| GTGTGGAAGAGATGAGACGG+GGG | + | tig0021514:66922-66941 | None:intergenic | 55.0% | |
| GAGACAACTGCAGTAGCTCC+AGG | + | tig0021514:67211-67230 | None:intergenic | 55.0% | |
| ! | GTCTCAACCCTCGGAGGTTT+TGG | - | tig0021514:67226-67245 | Msa1392500:intron | 55.0% |
| CTCGCTACCAAAACCTCCGA+GGG | + | tig0021514:67236-67255 | None:intergenic | 55.0% | |
| GCAGTTGTCTCAACCCTCGG+AGG | - | tig0021514:67220-67239 | Msa1392500:intron | 60.0% | |
| CCTCGCTACCAAAACCTCCG+AGG | + | tig0021514:67237-67256 | None:intergenic | 60.0% | |
| !!! | CCTCGGAGGTTTTGGTAGCG+AGG | - | tig0021514:67234-67253 | Msa1392500:CDS | 60.0% |
| GCAGTTGTCTCAACCCTCGG+AGG | - | tig0021514:67220-67239 | Msa1392500:intron | 60.0% | |
| CCTCGCTACCAAAACCTCCG+AGG | + | tig0021514:67237-67256 | None:intergenic | 60.0% | |
| !!! | CCTCGGAGGTTTTGGTAGCG+AGG | - | tig0021514:67234-67253 | Msa1392500:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0021514 | gene | 66553 | 67997 | 66553 | ID=Msa1392500;Name=Msa1392500 |
| tig0021514 | mRNA | 66553 | 67997 | 66553 | ID=Msa1392500-mRNA-1;Parent=Msa1392500;Name=Msa1392500-mRNA-1;_AED=0.39;_eAED=0.39;_QI=0|0.5|0.33|0.66|1|1|3|57|109 |
| tig0021514 | exon | 66553 | 66749 | 66553 | ID=Msa1392500-mRNA-1:exon:13202;Parent=Msa1392500-mRNA-1 |
| tig0021514 | exon | 67231 | 67377 | 67231 | ID=Msa1392500-mRNA-1:exon:13201;Parent=Msa1392500-mRNA-1 |
| tig0021514 | exon | 67955 | 67997 | 67955 | ID=Msa1392500-mRNA-1:exon:13200;Parent=Msa1392500-mRNA-1 |
| tig0021514 | CDS | 67955 | 67997 | 67955 | ID=Msa1392500-mRNA-1:cds;Parent=Msa1392500-mRNA-1 |
| tig0021514 | CDS | 67231 | 67377 | 67231 | ID=Msa1392500-mRNA-1:cds;Parent=Msa1392500-mRNA-1 |
| tig0021514 | CDS | 66610 | 66749 | 66610 | ID=Msa1392500-mRNA-1:cds;Parent=Msa1392500-mRNA-1 |
| tig0021514 | three_prime_UTR | 66553 | 66609 | 66553 | ID=Msa1392500-mRNA-1:three_prime_utr;Parent=Msa1392500-mRNA-1 |
| Gene Sequence |
| Protein sequence |
