Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1394180 | YP_009141612.1 | 85.086 | 818 | 30 | 10 | 6 | 731 | 553 | 1370 | 0.0 | 1343 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1394180 | sp|P12227|RPOC2_PEA | 76.132 | 817 | 94 | 11 | 10 | 731 | 350 | 1160 | 0.0 | 1174 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1394180 | A0A0F6NLB9 | 85.086 | 818 | 30 | 10 | 6 | 731 | 553 | 1370 | 0.0 | 1343 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1354930 | Msa1394180 | 0.806434 | 8.241715e-50 | -8.615850e-47 |
| Msa0268760 | Msa1394180 | 0.810844 | 9.415230e-51 | -8.615850e-47 |
| Msa1143180 | Msa1394180 | 0.801882 | 7.301765e-49 | -8.615850e-47 |
| Msa0582660 | Msa1394180 | 0.805930 | 1.052337e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1394180 | MtrunA17_CPg0493001 | 83.272 | 819 | 43 | 9 | 6 | 731 | 557 | 1374 | 0.0 | 1315 |
| Msa1394180 | MtrunA17_Chr4g0016671 | 83.272 | 819 | 43 | 9 | 6 | 731 | 557 | 1374 | 0.0 | 1315 |
| Msa1394180 | MtrunA17_Chr4g0015591 | 79.037 | 706 | 83 | 8 | 6 | 662 | 8 | 697 | 0.0 | 1022 |
| Msa1394180 | MtrunA17_Chr3g0095741 | 65.902 | 305 | 30 | 6 | 6 | 237 | 170 | 473 | 1.29e-110 | 343 |
| Msa1394180 | MtrunA17_Chr7g0275181 | 94.215 | 121 | 7 | 0 | 587 | 707 | 1 | 121 | 9.07e-72 | 229 |
| Msa1394180 | MtrunA17_Chr7g0243011 | 84.211 | 95 | 12 | 1 | 598 | 692 | 1 | 92 | 4.53e-45 | 157 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1394180 | ATCG00170.1 | 60.384 | 833 | 200 | 20 | 5 | 727 | 554 | 1366 | 0.0 | 881 |
Find 135 sgRNAs with CRISPR-Local
Find 188 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTACTTTGATTTGGTATTT+TGG | 0.149348 | tig0021785:+76986 | None:intergenic |
| GTACGGATCATTTCATTTAA+TGG | 0.156078 | tig0021785:-77295 | Msa1394180:CDS |
| AGTAATTAAATATTATTTAA+TGG | 0.156697 | tig0021785:-75905 | Msa1394180:CDS |
| TACGAATAGTTCCGTGATTT+TGG | 0.168127 | tig0021785:+76193 | None:intergenic |
| AATGAATTATTATTATTAAT+TGG | 0.173312 | tig0021785:+76048 | None:intergenic |
| GTTGTCAATTATATTCTTTA+TGG | 0.179224 | tig0021785:-76527 | Msa1394180:CDS |
| AATAATTCATTAGGCCCTTT+AGG | 0.184967 | tig0021785:-76036 | Msa1394180:CDS |
| TAATTTCGATATGTCTATTA+TGG | 0.208042 | tig0021785:+75308 | None:intergenic |
| TCTAATATCTGTTCCACTTT+TGG | 0.236437 | tig0021785:+75517 | None:intergenic |
| GAATCTATTTCTTCGTCTTT+TGG | 0.240397 | tig0021785:+77236 | None:intergenic |
| GCTCCTGGAGTCGCCAAATA+TGG | 0.258399 | tig0021785:+75640 | None:intergenic |
| ACTATTATTCCGTACCATTA+TGG | 0.259697 | tig0021785:+76913 | None:intergenic |
| TATCCCTCTCTCCGGGAAAA+TGG | 0.265071 | tig0021785:+76779 | None:intergenic |
| CCTGGGATCGATAAACCTTT+TGG | 0.276582 | tig0021785:+75341 | None:intergenic |
| CTCTTTCCTGGAATAGATCT+TGG | 0.281882 | tig0021785:+76567 | None:intergenic |
| AATTATATTCTTTATGGAAA+TGG | 0.289554 | tig0021785:-76521 | Msa1394180:CDS |
| AGAAATGACCCATCTGGTTT+AGG | 0.294953 | tig0021785:-76302 | Msa1394180:CDS |
| ATAATTCATTAGGCCCTTTA+GGG | 0.298359 | tig0021785:-76035 | Msa1394180:CDS |
| TGTTACCGAGCTTTATTATT+GGG | 0.299555 | tig0021785:-75160 | Msa1394180:CDS |
| TTGTTACCGAGCTTTATTAT+TGG | 0.301429 | tig0021785:-75161 | Msa1394180:CDS |
| AGCGCAAAGTCGTATTTCTT+TGG | 0.301847 | tig0021785:-75374 | Msa1394180:CDS |
| GGACTTGTTTAGTCTTGAAT+TGG | 0.302268 | tig0021785:-76454 | Msa1394180:CDS |
| ATTAATAATAATAATTCATT+AGG | 0.308918 | tig0021785:-76045 | Msa1394180:CDS |
| ACCACATCTAAAACTAAAAT+CGG | 0.311242 | tig0021785:-75713 | Msa1394180:CDS |
| GTTCCAGATTATCTCTTTCC+TGG | 0.315965 | tig0021785:+76555 | None:intergenic |
| AAGATCGGCTAACCCATATT+TGG | 0.317195 | tig0021785:-75653 | Msa1394180:CDS |
| AAAATCGATCTACTTTGATT+TGG | 0.319610 | tig0021785:+76978 | None:intergenic |
| ACCCGAATCTTCTTCCATAA+TGG | 0.320662 | tig0021785:-76927 | Msa1394180:CDS |
| TTTAGCAAAAGCCGCTCTTC+GGG | 0.336042 | tig0021785:-75068 | Msa1394180:CDS |
| ATTCCTTGGGGATTCTTGAT+TGG | 0.341306 | tig0021785:-75412 | Msa1394180:CDS |
| CTCTTCGGGGTCGTATTGAT+TGG | 0.345022 | tig0021785:-75054 | Msa1394180:CDS |
| TGAATCCATTCCATTTGAAT+TGG | 0.352292 | tig0021785:-75834 | Msa1394180:CDS |
| GATAAAGGATTTCTCCATAA+TGG | 0.357948 | tig0021785:+75605 | None:intergenic |
| CTAAAATATCTCCTTGATAA+AGG | 0.358065 | tig0021785:+75590 | None:intergenic |
| CTTCTTATATTGAAAGTGAT+TGG | 0.363141 | tig0021785:+76872 | None:intergenic |
| ATTCCAGGAAAGAGATAATC+TGG | 0.369993 | tig0021785:-76558 | Msa1394180:CDS |
| GCAACCATTCATGGCCATTA+TGG | 0.371253 | tig0021785:-75619 | Msa1394180:CDS |
| ATCTTCTGAAACCAAGACTT+TGG | 0.372706 | tig0021785:+75267 | None:intergenic |
| AAAGTCTTGGTTTCAGAAGA+TGG | 0.375293 | tig0021785:-75265 | Msa1394180:CDS |
| GGTAAAATATGCACTTCTTC+GGG | 0.379845 | tig0021785:+76947 | None:intergenic |
| CAAGAATTCTCGGCATTCCT+TGG | 0.385715 | tig0021785:-75426 | Msa1394180:CDS |
| GAAATAAGGAATGCCGATCT+TGG | 0.386359 | tig0021785:-76158 | Msa1394180:intron |
| GAACGAACTAATGCGACTTC+TGG | 0.388470 | tig0021785:-77184 | Msa1394180:CDS |
| TACCATTATGGAAGAAGATT+CGG | 0.389569 | tig0021785:+76925 | None:intergenic |
| GGGTAAAATATGCACTTCTT+CGG | 0.392587 | tig0021785:+76946 | None:intergenic |
| TCTTTCCTGGAATAGATCTT+GGG | 0.395163 | tig0021785:+76568 | None:intergenic |
| GACTTGTTTAGTCTTGAATT+GGG | 0.395976 | tig0021785:-76453 | Msa1394180:CDS |
| AATAATAGTCTCGTTGGAAT+AGG | 0.398435 | tig0021785:-76899 | Msa1394180:CDS |
| TGGAAATGGAAAATCCATTC+GGG | 0.398927 | tig0021785:-76507 | Msa1394180:CDS |
| AAGAATTCTCGGCATTCCTT+GGG | 0.401980 | tig0021785:-75425 | Msa1394180:CDS |
| ATTACTAAATATAGAACTAT+AGG | 0.405919 | tig0021785:-77069 | Msa1394180:intron |
| TTTGATTATGAGTTATTAAA+CGG | 0.408536 | tig0021785:+75977 | None:intergenic |
| TCAAGTTATAACTGTTCAAA+TGG | 0.411576 | tig0021785:-75689 | Msa1394180:CDS |
| AAAGAATAATGCACCGTTCA+CGG | 0.414603 | tig0021785:-74970 | Msa1394180:CDS |
| ACCATTGATAGGTATTTCAA+TGG | 0.423769 | tig0021785:+77156 | None:intergenic |
| TCCTTCTTGAATCGATTGAA+TGG | 0.434280 | tig0021785:+77209 | None:intergenic |
| ACTCCAGGAGCAACCATTCA+TGG | 0.440561 | tig0021785:-75628 | Msa1394180:CDS |
| ATGGAAATGGAAAATCCATT+CGG | 0.440917 | tig0021785:-76508 | Msa1394180:CDS |
| ACCATTATGGAAGAAGATTC+GGG | 0.451336 | tig0021785:+76926 | None:intergenic |
| GTAGAAAATACCAATTCAAA+TGG | 0.452303 | tig0021785:+75824 | None:intergenic |
| TCAAATAACATCCAAAGTCT+TGG | 0.456056 | tig0021785:-75278 | Msa1394180:CDS |
| TCCATTGAAATACCTATCAA+TGG | 0.461052 | tig0021785:-77157 | Msa1394180:intron |
| GAGTGTATAACAAGAATTCT+CGG | 0.465449 | tig0021785:-75436 | Msa1394180:CDS |
| CAATAATCCAATTAATTCAC+CGG | 0.465805 | tig0021785:+75222 | None:intergenic |
| TATGGAGAAATCCTTTATCA+AGG | 0.470177 | tig0021785:-75601 | Msa1394180:CDS |
| ACACAAGGATTCAATTAGTT+CGG | 0.470880 | tig0021785:-76475 | Msa1394180:CDS |
| TTTCCAACTTGACAAAATAA+CGG | 0.471878 | tig0021785:-75938 | Msa1394180:CDS |
| CTCCTGGAGTCGCCAAATAT+GGG | 0.476067 | tig0021785:+75641 | None:intergenic |
| ACTTGACGGGCTATCCCTAA+AGG | 0.478111 | tig0021785:+76021 | None:intergenic |
| TTCTCCATAATGGCCATGAA+TGG | 0.483718 | tig0021785:+75615 | None:intergenic |
| AACCCATATTTGGCGACTCC+AGG | 0.484987 | tig0021785:-75643 | Msa1394180:CDS |
| AGTTTCTTGAAAACTCGCTT+CGG | 0.487107 | tig0021785:+75099 | None:intergenic |
| TTTGGTTAATAAAATCCAAA+AGG | 0.488399 | tig0021785:-75356 | Msa1394180:CDS |
| TTAGTCTTGAATTGGGATCA+AGG | 0.488756 | tig0021785:-76446 | Msa1394180:CDS |
| TTTGTTGAAGTAAGTACAAA+CGG | 0.490928 | tig0021785:-76386 | Msa1394180:intron |
| AACACAAGGTCTTCCAAAAG+TGG | 0.491269 | tig0021785:-75530 | Msa1394180:CDS |
| AACGATATTACTGTCTAGAT+CGG | 0.493932 | tig0021785:+75858 | None:intergenic |
| ACGTTTACAATAATTAGTCT+TGG | 0.495555 | tig0021785:-75781 | Msa1394180:CDS |
| TATTATGGATGTGTACTCCC+TGG | 0.495688 | tig0021785:+75323 | None:intergenic |
| CTTGACGGGCTATCCCTAAA+GGG | 0.500008 | tig0021785:+76022 | None:intergenic |
| GGATATCTTATCCCTCTCTC+CGG | 0.501160 | tig0021785:+76771 | None:intergenic |
| AAATACCAATTCAAATGGAA+TGG | 0.502465 | tig0021785:+75829 | None:intergenic |
| AGAACGAACTGGGCGTGCCT+TGG | 0.511332 | tig0021785:-75194 | Msa1394180:CDS |
| ACGATATTACTGTCTAGATC+GGG | 0.515149 | tig0021785:+75859 | None:intergenic |
| TCCATTCAATCGATTCAAGA+AGG | 0.517363 | tig0021785:-77210 | Msa1394180:CDS |
| ACAATGTTAAATATCACAAT+GGG | 0.519777 | tig0021785:-76092 | Msa1394180:CDS |
| ATTATGGATGTGTACTCCCT+GGG | 0.522327 | tig0021785:+75324 | None:intergenic |
| TGATATTTAACATTGTTGAA+TGG | 0.522425 | tig0021785:+76099 | None:intergenic |
| GGTCGTATTGATTGGTTGAA+AGG | 0.523725 | tig0021785:-75046 | Msa1394180:CDS |
| TTATTGCGAGCAGAACGAAC+TGG | 0.524459 | tig0021785:-75205 | Msa1394180:CDS |
| TATCAAGATAGAACTGTGTC+GGG | 0.526561 | tig0021785:+76750 | None:intergenic |
| CCAAAAGGTTTATCGATCCC+AGG | 0.528931 | tig0021785:-75341 | Msa1394180:CDS |
| TGGCCATGAATGGTTGCTCC+TGG | 0.529145 | tig0021785:+75625 | None:intergenic |
| ATTTAATCAAATAATATGTA+CGG | 0.533241 | tig0021785:-77312 | None:intergenic |
| ATTGATCGCGGATAATGAAT+CGG | 0.540104 | tig0021785:-76279 | Msa1394180:CDS |
| ACTTACTTCAACAAAGGAAG+AGG | 0.540450 | tig0021785:+76394 | None:intergenic |
| GGAATGATACCCGTTGGTAC+CGG | 0.541673 | tig0021785:-74998 | Msa1394180:CDS |
| GTAACAAATTGCTTCTTCCA+AGG | 0.542955 | tig0021785:+75177 | None:intergenic |
| TTCGGGGAATTTCCGACACA+AGG | 0.543374 | tig0021785:-76490 | Msa1394180:CDS |
| ATGACAAAATTATCCAAGAT+CGG | 0.543980 | tig0021785:+76145 | None:intergenic |
| GTACGGAATAATAGTCTCGT+TGG | 0.546841 | tig0021785:-76905 | Msa1394180:CDS |
| TATATTGCGTTGACCGTGAA+CGG | 0.550663 | tig0021785:+74957 | None:intergenic |
| AAGACCTTGTGTTATATCAC+CGG | 0.552596 | tig0021785:+75540 | None:intergenic |
| TTATTCCCAATAATAAAGCT+CGG | 0.553354 | tig0021785:+75155 | None:intergenic |
| GGATTCTGTAATAATAAGAT+CGG | 0.553640 | tig0021785:-75668 | Msa1394180:CDS |
| AACAATGTTAAATATCACAA+TGG | 0.560038 | tig0021785:-76093 | Msa1394180:CDS |
| GTTTGTACTTACTTCAACAA+AGG | 0.560389 | tig0021785:+76388 | None:intergenic |
| CCACATCTAAAACTAAAATC+GGG | 0.564041 | tig0021785:-75712 | Msa1394180:CDS |
| GCGATCAATCCTAAACCAGA+TGG | 0.564364 | tig0021785:+76293 | None:intergenic |
| GTATCAAGATAGAACTGTGT+CGG | 0.565364 | tig0021785:+76749 | None:intergenic |
| TATTGCGAGCAGAACGAACT+GGG | 0.572451 | tig0021785:-75204 | Msa1394180:CDS |
| GATATCTTATCCCTCTCTCC+GGG | 0.575421 | tig0021785:+76772 | None:intergenic |
| GAAGATTTCATTGAGTATCG+AGG | 0.578377 | tig0021785:-77025 | Msa1394180:CDS |
| AATCTTCTTCCATAATGGTA+CGG | 0.581413 | tig0021785:-76922 | Msa1394180:CDS |
| AACTAATTGAATCCTTGTGT+CGG | 0.584495 | tig0021785:+76478 | None:intergenic |
| TGTGTCGGAAATTCCCCGAA+TGG | 0.589742 | tig0021785:+76493 | None:intergenic |
| CTTTCCTGGAATAGATCTTG+GGG | 0.594381 | tig0021785:+76569 | None:intergenic |
| TTAGGGATAGCCCGTCAAGT+TGG | 0.605724 | tig0021785:-76018 | Msa1394180:CDS |
| CAGTTCTATCTTGATACCAC+CGG | 0.607890 | tig0021785:-76743 | Msa1394180:CDS |
| CAAAAGGTTTATCGATCCCA+GGG | 0.609012 | tig0021785:-75340 | Msa1394180:CDS |
| CTTACTTCAACAAAGGAAGA+GGG | 0.610881 | tig0021785:+76395 | None:intergenic |
| TACTTCAACAAAGGAAGAGG+GGG | 0.611335 | tig0021785:+76397 | None:intergenic |
| CGATCAATCCTAAACCAGAT+GGG | 0.613760 | tig0021785:+76294 | None:intergenic |
| ATCAATACGACCCCGAAGAG+CGG | 0.623604 | tig0021785:+75057 | None:intergenic |
| AGAATTCTCGGCATTCCTTG+GGG | 0.628635 | tig0021785:-75424 | Msa1394180:CDS |
| AATAATCCAATTAATTCACC+GGG | 0.632479 | tig0021785:+75223 | None:intergenic |
| AAATCACTTAGCCAAAATCA+CGG | 0.641309 | tig0021785:-76204 | Msa1394180:CDS |
| ATCTGGTTTAGGATTGATCG+CGG | 0.648560 | tig0021785:-76291 | Msa1394180:CDS |
| TTAGCAAAAGCCGCTCTTCG+GGG | 0.665173 | tig0021785:-75067 | Msa1394180:CDS |
| GCACCAATCAAGAATCCCCA+AGG | 0.666821 | tig0021785:+75409 | None:intergenic |
| CTATCTTGATACCACCGGAA+CGG | 0.674289 | tig0021785:-76738 | Msa1394180:intron |
| TCGCGGATAATGAATCGGAT+CGG | 0.674619 | tig0021785:-76274 | Msa1394180:CDS |
| TTACTTCAACAAAGGAAGAG+GGG | 0.682642 | tig0021785:+76396 | None:intergenic |
| GGAAATGGAAAATCCATTCG+GGG | 0.695544 | tig0021785:-76506 | Msa1394180:CDS |
| AGATCCGGTGATATAACACA+AGG | 0.736976 | tig0021785:-75544 | Msa1394180:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTTTTCTTTTCTAAT+CGG | + | tig0021785:75327-75346 | None:intergenic | 10.0% |
| !! | AATCAAAAAAAATTCATAAT+TGG | - | tig0021785:75459-75478 | Msa1394180:CDS | 10.0% |
| !!! | TTATTATTAATTGGAATTTT+AGG | + | tig0021785:76102-76121 | None:intergenic | 10.0% |
| !!! | GAATAATTTTTTTTTTTTCA+AGG | + | tig0021785:77234-77253 | None:intergenic | 10.0% |
| !! | ATTACTAAATATAGAACTAT+AGG | - | tig0021785:75087-75106 | Msa1394180:CDS | 15.0% |
| !!! | AATCGAATTAAAATATTTTC+TGG | - | tig0021785:75348-75367 | Msa1394180:CDS | 15.0% |
| !!! | TGTAATTTTATATGAAATAC+CGG | - | tig0021785:75538-75557 | Msa1394180:CDS | 15.0% |
| !! | AATTATATTCTTTATGGAAA+TGG | - | tig0021785:75635-75654 | Msa1394180:CDS | 15.0% |
| !! | TTTGATTATGAGTTATTAAA+CGG | + | tig0021785:76182-76201 | None:intergenic | 15.0% |
| !!! | TCACGATACTTTTTATTTAT+TGG | - | tig0021785:74897-74916 | Msa1394180:CDS | 20.0% |
| !!! | GAAATCTTCTTTTTGAAAAA+CGG | + | tig0021785:75120-75139 | None:intergenic | 20.0% |
| !!! | CAAAACAAAATACTTTTTCT+TGG | + | tig0021785:75510-75529 | None:intergenic | 20.0% |
| !!! | CAAGAAAAAGTATTTTGTTT+TGG | - | tig0021785:75508-75527 | Msa1394180:CDS | 20.0% |
| !!! | AAAAGTATTTTGTTTTGGTT+CGG | - | tig0021785:75513-75532 | Msa1394180:CDS | 20.0% |
| !! | GGTATTTCATATAAAATTAC+AGG | + | tig0021785:75539-75558 | None:intergenic | 20.0% |
| !! | GTTGTCAATTATATTCTTTA+TGG | - | tig0021785:75629-75648 | Msa1394180:CDS | 20.0% |
| !! | TTGGAATGAATAGAAAAAAA+TGG | + | tig0021785:75920-75939 | None:intergenic | 20.0% |
| !!! | ATTTTTTTCTATTCATTCCA+AGG | - | tig0021785:75919-75938 | Msa1394180:CDS | 20.0% |
| !! | TATGTTGTTGAATAGAAATA+AGG | - | tig0021785:75984-76003 | Msa1394180:CDS | 20.0% |
| !! | TGATATTTAACATTGTTGAA+TGG | + | tig0021785:76060-76079 | None:intergenic | 20.0% |
| !! | AACAATGTTAAATATCACAA+TGG | - | tig0021785:76063-76082 | Msa1394180:CDS | 20.0% |
| !! | ACAATGTTAAATATCACAAT+GGG | - | tig0021785:76064-76083 | Msa1394180:CDS | 20.0% |
| !! | AATAAAAATTTCCAACTTGA+CGG | + | tig0021785:76152-76171 | None:intergenic | 20.0% |
| !! | TGTATAGCTAAAATGAAAAA+TGG | - | tig0021785:76420-76439 | Msa1394180:CDS | 20.0% |
| !! | TTTGGTTAATAAAATCCAAA+AGG | - | tig0021785:76800-76819 | Msa1394180:CDS | 20.0% |
| !! | TAATTTCGATATGTCTATTA+TGG | + | tig0021785:76851-76870 | None:intergenic | 20.0% |
| !!! | TTAAAGAGAATGTTGTTTTA+GGG | - | tig0021785:77135-77154 | Msa1394180:intron | 20.0% |
| !!! | AATCAAATAATTTTCTGTGA+TGG | + | tig0021785:77283-77302 | None:intergenic | 20.0% |
| ! | CTATGAAAAATACCATTGAT+AGG | + | tig0021785:75014-75033 | None:intergenic | 25.0% |
| !!! | TCTACTTTGATTTGGTATTT+TGG | + | tig0021785:75173-75192 | None:intergenic | 25.0% |
| ! | AAAATCGATCTACTTTGATT+TGG | + | tig0021785:75181-75200 | None:intergenic | 25.0% |
| ! | CTTCTTATATTGAAAGTGAT+TGG | + | tig0021785:75287-75306 | None:intergenic | 25.0% |
| ! | AACGGTAAAAAAAAAATGGA+AGG | - | tig0021785:75436-75455 | Msa1394180:CDS | 25.0% |
| !!! | CAAAAAAAGTACTTCTATTG+AGG | - | tig0021785:75733-75752 | Msa1394180:CDS | 25.0% |
| ! | TTTGTTGAAGTAAGTACAAA+CGG | - | tig0021785:75770-75789 | Msa1394180:CDS | 25.0% |
| !!! | GTGATTTTTAATTTTTGCCT+TGG | + | tig0021785:75939-75958 | None:intergenic | 25.0% |
| ! | ATGACAAAATTATCCAAGAT+CGG | + | tig0021785:76014-76033 | None:intergenic | 25.0% |
| ! | ATAAAAATTTCCAACTTGAC+GGG | + | tig0021785:76151-76170 | None:intergenic | 25.0% |
| ! | TTTCCAACTTGACAAAATAA+CGG | - | tig0021785:76218-76237 | Msa1394180:CDS | 25.0% |
| ! | AAATACCAATTCAAATGGAA+TGG | + | tig0021785:76330-76349 | None:intergenic | 25.0% |
| ! | GTAGAAAATACCAATTCAAA+TGG | + | tig0021785:76335-76354 | None:intergenic | 25.0% |
| !! | ACGTTTACAATAATTAGTCT+TGG | - | tig0021785:76375-76394 | Msa1394180:intron | 25.0% |
| !! | ACCACATCTAAAACTAAAAT+CGG | - | tig0021785:76443-76462 | Msa1394180:CDS | 25.0% |
| ! | TCAAGTTATAACTGTTCAAA+TGG | - | tig0021785:76467-76486 | Msa1394180:CDS | 25.0% |
| ! | GGATTCTGTAATAATAAGAT+CGG | - | tig0021785:76488-76507 | Msa1394180:CDS | 25.0% |
| ! | CTAAAATATCTCCTTGATAA+AGG | + | tig0021785:76569-76588 | None:intergenic | 25.0% |
| ! | ATATATGAAAAATCGAGATC+CGG | - | tig0021785:76597-76616 | Msa1394180:intron | 25.0% |
| !!! | ATGTCTAATGTATTTTTACC+CGG | - | tig0021785:76915-76934 | Msa1394180:CDS | 25.0% |
| ! | AATAATCCAATTAATTCACC+GGG | + | tig0021785:76936-76955 | None:intergenic | 25.0% |
| ! | CAATAATCCAATTAATTCAC+CGG | + | tig0021785:76937-76956 | None:intergenic | 25.0% |
| ! | TTATTCCCAATAATAAAGCT+CGG | + | tig0021785:77004-77023 | None:intergenic | 25.0% |
| !!! | CTTAAAGAGAATGTTGTTTT+AGG | - | tig0021785:77134-77153 | Msa1394180:intron | 25.0% |
| !!! | TAAAGAGAATGTTGTTTTAG+GGG | - | tig0021785:77136-77155 | Msa1394180:intron | 25.0% |
| GTACGGATCATTTCATTTAA+TGG | - | tig0021785:74861-74880 | Msa1394180:CDS | 30.0% | |
| !! | AAAGTATCGTGAAAAATAGC+AGG | + | tig0021785:74889-74908 | None:intergenic | 30.0% |
| !! | GAATCTATTTCTTCGTCTTT+TGG | + | tig0021785:74923-74942 | None:intergenic | 30.0% |
| TCCATTGAAATACCTATCAA+TGG | - | tig0021785:74999-75018 | Msa1394180:CDS | 30.0% | |
| ACCATTGATAGGTATTTCAA+TGG | + | tig0021785:75003-75022 | None:intergenic | 30.0% | |
| TACCATTATGGAAGAAGATT+CGG | + | tig0021785:75234-75253 | None:intergenic | 30.0% | |
| AATCTTCTTCCATAATGGTA+CGG | - | tig0021785:75234-75253 | Msa1394180:CDS | 30.0% | |
| ACTATTATTCCGTACCATTA+TGG | + | tig0021785:75246-75265 | None:intergenic | 30.0% | |
| AATAATAGTCTCGTTGGAAT+AGG | - | tig0021785:75257-75276 | Msa1394180:CDS | 30.0% | |
| TTCAATATAAGAAGTCGAGT+AGG | - | tig0021785:75293-75312 | Msa1394180:CDS | 30.0% | |
| !!! | CCATTTTTTTTTTACCGTTC+CGG | + | tig0021785:75435-75454 | None:intergenic | 30.0% |
| ATAATTGGATCTATGTCCAA+TGG | - | tig0021785:75474-75493 | Msa1394180:CDS | 30.0% | |
| TTTACAAAATCGATACTGTC+CGG | + | tig0021785:75560-75579 | None:intergenic | 30.0% | |
| ATGGAAATGGAAAATCCATT+CGG | - | tig0021785:75648-75667 | Msa1394180:CDS | 30.0% | |
| AACTAATTGAATCCTTGTGT+CGG | + | tig0021785:75681-75700 | None:intergenic | 30.0% | |
| ACACAAGGATTCAATTAGTT+CGG | - | tig0021785:75681-75700 | Msa1394180:CDS | 30.0% | |
| !! | GACTTGTTTAGTCTTGAATT+GGG | - | tig0021785:75703-75722 | Msa1394180:CDS | 30.0% |
| !! | AAAAAGTACTTCTATTGAGG+AGG | - | tig0021785:75736-75755 | Msa1394180:CDS | 30.0% |
| GTTTGTACTTACTTCAACAA+AGG | + | tig0021785:75771-75790 | None:intergenic | 30.0% | |
| AAATCACTTAGCCAAAATCA+CGG | - | tig0021785:75952-75971 | Msa1394180:CDS | 30.0% | |
| AATAATTCATTAGGCCCTTT+AGG | - | tig0021785:76120-76139 | Msa1394180:CDS | 30.0% | |
| ATAATTCATTAGGCCCTTTA+GGG | - | tig0021785:76121-76140 | Msa1394180:CDS | 30.0% | |
| !! | TTTCCGTTATTTTGTCAAGT+TGG | + | tig0021785:76224-76243 | None:intergenic | 30.0% |
| AACGATATTACTGTCTAGAT+CGG | + | tig0021785:76301-76320 | None:intergenic | 30.0% | |
| TGAATCCATTCCATTTGAAT+TGG | - | tig0021785:76322-76341 | Msa1394180:CDS | 30.0% | |
| ! | CCACATCTAAAACTAAAATC+GGG | - | tig0021785:76444-76463 | Msa1394180:CDS | 30.0% |
| GATAAAGGATTTCTCCATAA+TGG | + | tig0021785:76554-76573 | None:intergenic | 30.0% | |
| TATGGAGAAATCCTTTATCA+AGG | - | tig0021785:76555-76574 | Msa1394180:CDS | 30.0% | |
| ! | TCTAATATCTGTTCCACTTT+TGG | + | tig0021785:76642-76661 | None:intergenic | 30.0% |
| TCGAAAAAAGAATTGATGCT+TGG | - | tig0021785:76694-76713 | Msa1394180:intron | 30.0% | |
| GAGTGTATAACAAGAATTCT+CGG | - | tig0021785:76720-76739 | Msa1394180:intron | 30.0% | |
| TCAAATAACATCCAAAGTCT+TGG | - | tig0021785:76878-76897 | Msa1394180:CDS | 30.0% | |
| ! | TTTTTACCCGGTGAATTAAT+TGG | - | tig0021785:76927-76946 | Msa1394180:CDS | 30.0% |
| !! | TTGTTACCGAGCTTTATTAT+TGG | - | tig0021785:76995-77014 | Msa1394180:CDS | 30.0% |
| !! | TGTTACCGAGCTTTATTATT+GGG | - | tig0021785:76996-77015 | Msa1394180:CDS | 30.0% |
| !!! | AAAGAGAATGTTGTTTTAGG+GGG | - | tig0021785:77137-77156 | Msa1394180:intron | 30.0% |
| ! | GTGCATTATTCTTTTGAATC+CGG | + | tig0021785:77180-77199 | None:intergenic | 30.0% |
| ! | TCCATTCAATCGATTCAAGA+AGG | - | tig0021785:74946-74965 | Msa1394180:CDS | 35.0% |
| TCCTTCTTGAATCGATTGAA+TGG | + | tig0021785:74950-74969 | None:intergenic | 35.0% | |
| TCAATACAGAAGACAGATTC+AGG | - | tig0021785:75063-75082 | Msa1394180:CDS | 35.0% | |
| ! | GAAGATTTCATTGAGTATCG+AGG | - | tig0021785:75131-75150 | Msa1394180:CDS | 35.0% |
| GGTAAAATATGCACTTCTTC+GGG | + | tig0021785:75212-75231 | None:intergenic | 35.0% | |
| GGGTAAAATATGCACTTCTT+CGG | + | tig0021785:75213-75232 | None:intergenic | 35.0% | |
| ACCATTATGGAAGAAGATTC+GGG | + | tig0021785:75233-75252 | None:intergenic | 35.0% | |
| AATATAAGAAGTCGAGTAGG+CGG | - | tig0021785:75296-75315 | Msa1394180:CDS | 35.0% | |
| ! | TCTGGAAATATCCATTTTCC+CGG | - | tig0021785:75366-75385 | Msa1394180:CDS | 35.0% |
| TATCAAGATAGAACTGTGTC+GGG | + | tig0021785:75409-75428 | None:intergenic | 35.0% | |
| GTATCAAGATAGAACTGTGT+CGG | + | tig0021785:75410-75429 | None:intergenic | 35.0% | |
| !!! | TTTTTTTTTTACCGTTCCGG+TGG | + | tig0021785:75432-75451 | None:intergenic | 35.0% |
| CCGGAACGGTAAAAAAAAAA+TGG | - | tig0021785:75432-75451 | Msa1394180:CDS | 35.0% | |
| TCTTTCCTGGAATAGATCTT+GGG | + | tig0021785:75591-75610 | None:intergenic | 35.0% | |
| ATTCCAGGAAAGAGATAATC+TGG | - | tig0021785:75598-75617 | Msa1394180:CDS | 35.0% | |
| TGGAAATGGAAAATCCATTC+GGG | - | tig0021785:75649-75668 | Msa1394180:CDS | 35.0% | |
| !! | GGACTTGTTTAGTCTTGAAT+TGG | - | tig0021785:75702-75721 | Msa1394180:CDS | 35.0% |
| !! | TTAGTCTTGAATTGGGATCA+AGG | - | tig0021785:75710-75729 | Msa1394180:CDS | 35.0% |
| TTACTTCAACAAAGGAAGAG+GGG | + | tig0021785:75763-75782 | None:intergenic | 35.0% | |
| CTTACTTCAACAAAGGAAGA+GGG | + | tig0021785:75764-75783 | None:intergenic | 35.0% | |
| ACTTACTTCAACAAAGGAAG+AGG | + | tig0021785:75765-75784 | None:intergenic | 35.0% | |
| AGAAAAAGAAATGACCCATC+TGG | - | tig0021785:75848-75867 | Msa1394180:CDS | 35.0% | |
| ATTGATCGCGGATAATGAAT+CGG | - | tig0021785:75877-75896 | Msa1394180:CDS | 35.0% | |
| ! | TACGAATAGTTCCGTGATTT+TGG | + | tig0021785:75966-75985 | None:intergenic | 35.0% |
| ACGATATTACTGTCTAGATC+GGG | + | tig0021785:76300-76319 | None:intergenic | 35.0% | |
| !!! | CCCGATTTTAGTTTTAGATG+TGG | + | tig0021785:76447-76466 | None:intergenic | 35.0% |
| AAGACCTTGTGTTATATCAC+CGG | + | tig0021785:76619-76638 | None:intergenic | 35.0% | |
| !! | ATCTTCTGAAACCAAGACTT+TGG | + | tig0021785:76892-76911 | None:intergenic | 35.0% |
| AAAGTCTTGGTTTCAGAAGA+TGG | - | tig0021785:76891-76910 | Msa1394180:CDS | 35.0% | |
| GTAACAAATTGCTTCTTCCA+AGG | + | tig0021785:76982-77001 | None:intergenic | 35.0% | |
| AGTTTCTTGAAAACTCGCTT+CGG | + | tig0021785:77060-77079 | None:intergenic | 35.0% | |
| AAAGAATAATGCACCGTTCA+CGG | - | tig0021785:77186-77205 | Msa1394180:CDS | 35.0% | |
| ACCCGAATCTTCTTCCATAA+TGG | - | tig0021785:75229-75248 | Msa1394180:CDS | 40.0% | |
| GTACGGAATAATAGTCTCGT+TGG | - | tig0021785:75251-75270 | Msa1394180:CDS | 40.0% | |
| CAGTTCTATCTTGATACCAC+CGG | - | tig0021785:75413-75432 | Msa1394180:CDS | 40.0% | |
| ! | TCTTGGTAGTTGTGATCCAT+TGG | + | tig0021785:75493-75512 | None:intergenic | 40.0% |
| ! | TTTTCCCCAAGATCTATTCC+AGG | - | tig0021785:75583-75602 | Msa1394180:CDS | 40.0% |
| CTTTCCTGGAATAGATCTTG+GGG | + | tig0021785:75590-75609 | None:intergenic | 40.0% | |
| CTCTTTCCTGGAATAGATCT+TGG | + | tig0021785:75592-75611 | None:intergenic | 40.0% | |
| GTTCCAGATTATCTCTTTCC+TGG | + | tig0021785:75604-75623 | None:intergenic | 40.0% | |
| GGAAATGGAAAATCCATTCG+GGG | - | tig0021785:75650-75669 | Msa1394180:CDS | 40.0% | |
| TACTTCAACAAAGGAAGAGG+GGG | + | tig0021785:75762-75781 | None:intergenic | 40.0% | |
| ! | AGAAATGACCCATCTGGTTT+AGG | - | tig0021785:75854-75873 | Msa1394180:CDS | 40.0% |
| CGATCAATCCTAAACCAGAT+GGG | + | tig0021785:75865-75884 | None:intergenic | 40.0% | |
| ! | ATCTGGTTTAGGATTGATCG+CGG | - | tig0021785:75865-75884 | Msa1394180:CDS | 40.0% |
| GAAATAAGGAATGCCGATCT+TGG | - | tig0021785:75998-76017 | Msa1394180:CDS | 40.0% | |
| AAGATCGGCTAACCCATATT+TGG | - | tig0021785:76503-76522 | Msa1394180:CDS | 40.0% | |
| TTCTCCATAATGGCCATGAA+TGG | + | tig0021785:76544-76563 | None:intergenic | 40.0% | |
| AGATCCGGTGATATAACACA+AGG | - | tig0021785:76612-76631 | Msa1394180:intron | 40.0% | |
| AACACAAGGTCTTCCAAAAG+TGG | - | tig0021785:76626-76645 | Msa1394180:intron | 40.0% | |
| AAGAATTCTCGGCATTCCTT+GGG | - | tig0021785:76731-76750 | Msa1394180:intron | 40.0% | |
| ATTCCTTGGGGATTCTTGAT+TGG | - | tig0021785:76744-76763 | Msa1394180:CDS | 40.0% | |
| AGCGCAAAGTCGTATTTCTT+TGG | - | tig0021785:76782-76801 | Msa1394180:CDS | 40.0% | |
| CAAAAGGTTTATCGATCCCA+GGG | - | tig0021785:76816-76835 | Msa1394180:CDS | 40.0% | |
| ATTATGGATGTGTACTCCCT+GGG | + | tig0021785:76835-76854 | None:intergenic | 40.0% | |
| TATTATGGATGTGTACTCCC+TGG | + | tig0021785:76836-76855 | None:intergenic | 40.0% | |
| ! | TTTTAGCAAAAGCCGCTCTT+CGG | - | tig0021785:77087-77106 | Msa1394180:intron | 40.0% |
| !! | GGTCGTATTGATTGGTTGAA+AGG | - | tig0021785:77110-77129 | Msa1394180:intron | 40.0% |
| ! | TCTTTTGAATCCGGTACCAA+CGG | + | tig0021785:77171-77190 | None:intergenic | 40.0% |
| ! | TATATTGCGTTGACCGTGAA+CGG | + | tig0021785:77202-77221 | None:intergenic | 40.0% |
| GAACGAACTAATGCGACTTC+TGG | - | tig0021785:74972-74991 | Msa1394180:CDS | 45.0% | |
| ! | ATATCCATTTTCCCGGAGAG+AGG | - | tig0021785:75373-75392 | Msa1394180:CDS | 45.0% |
| ! | TATCCATTTTCCCGGAGAGA+GGG | - | tig0021785:75374-75393 | Msa1394180:CDS | 45.0% |
| GATATCTTATCCCTCTCTCC+GGG | + | tig0021785:75387-75406 | None:intergenic | 45.0% | |
| GGATATCTTATCCCTCTCTC+CGG | + | tig0021785:75388-75407 | None:intergenic | 45.0% | |
| CTATCTTGATACCACCGGAA+CGG | - | tig0021785:75418-75437 | Msa1394180:CDS | 45.0% | |
| GCGATCAATCCTAAACCAGA+TGG | + | tig0021785:75866-75885 | None:intergenic | 45.0% | |
| TCGCGGATAATGAATCGGAT+CGG | - | tig0021785:75882-75901 | Msa1394180:CDS | 45.0% | |
| GCAACCATTCATGGCCATTA+TGG | - | tig0021785:76537-76556 | Msa1394180:CDS | 45.0% | |
| CAAGAATTCTCGGCATTCCT+TGG | - | tig0021785:76730-76749 | Msa1394180:intron | 45.0% | |
| AGAATTCTCGGCATTCCTTG+GGG | - | tig0021785:76732-76751 | Msa1394180:intron | 45.0% | |
| ! | CCTGGGATCGATAAACCTTT+TGG | + | tig0021785:76818-76837 | None:intergenic | 45.0% |
| CCAAAAGGTTTATCGATCCC+AGG | - | tig0021785:76815-76834 | Msa1394180:CDS | 45.0% | |
| TTATTGCGAGCAGAACGAAC+TGG | - | tig0021785:76951-76970 | Msa1394180:CDS | 45.0% | |
| TATTGCGAGCAGAACGAACT+GGG | - | tig0021785:76952-76971 | Msa1394180:CDS | 45.0% | |
| TTTAGCAAAAGCCGCTCTTC+GGG | - | tig0021785:77088-77107 | Msa1394180:intron | 45.0% | |
| ! | CTTTTGAATCCGGTACCAAC+GGG | + | tig0021785:77170-77189 | None:intergenic | 45.0% |
| !! | AATGAATTATTATTATTAAT+TGG | + | tig0021785:76111-76130 | None:intergenic | 5.0% |
| !! | ATTAATAATAATAATTCATT+AGG | - | tig0021785:76111-76130 | Msa1394180:CDS | 5.0% |
| !! | AGTAATTAAATATTATTTAA+TGG | - | tig0021785:76251-76270 | Msa1394180:CDS | 5.0% |
| TATCCCTCTCTCCGGGAAAA+TGG | + | tig0021785:75380-75399 | None:intergenic | 50.0% | |
| TGTGTCGGAAATTCCCCGAA+TGG | + | tig0021785:75666-75685 | None:intergenic | 50.0% | |
| TTCGGGGAATTTCCGACACA+AGG | - | tig0021785:75666-75685 | Msa1394180:CDS | 50.0% | |
| !! | CTTGACGGGCTATCCCTAAA+GGG | + | tig0021785:76137-76156 | None:intergenic | 50.0% |
| !! | ACTTGACGGGCTATCCCTAA+AGG | + | tig0021785:76138-76157 | None:intergenic | 50.0% |
| TTAGGGATAGCCCGTCAAGT+TGG | - | tig0021785:76138-76157 | Msa1394180:CDS | 50.0% | |
| AACCCATATTTGGCGACTCC+AGG | - | tig0021785:76513-76532 | Msa1394180:CDS | 50.0% | |
| CTCCTGGAGTCGCCAAATAT+GGG | + | tig0021785:76518-76537 | None:intergenic | 50.0% | |
| ACTCCAGGAGCAACCATTCA+TGG | - | tig0021785:76528-76547 | Msa1394180:CDS | 50.0% | |
| GCACCAATCAAGAATCCCCA+AGG | + | tig0021785:76750-76769 | None:intergenic | 50.0% | |
| TTAGCAAAAGCCGCTCTTCG+GGG | - | tig0021785:77089-77108 | Msa1394180:intron | 50.0% | |
| ATCAATACGACCCCGAAGAG+CGG | + | tig0021785:77102-77121 | None:intergenic | 50.0% | |
| ! | CTCTTCGGGGTCGTATTGAT+TGG | - | tig0021785:77102-77121 | Msa1394180:intron | 50.0% |
| TTAGGGGGAATGATACCCGT+TGG | - | tig0021785:77152-77171 | Msa1394180:intron | 50.0% | |
| GGAATGATACCCGTTGGTAC+CGG | - | tig0021785:77158-77177 | Msa1394180:CDS | 50.0% | |
| GCTCCTGGAGTCGCCAAATA+TGG | + | tig0021785:76519-76538 | None:intergenic | 55.0% | |
| TGGCCATGAATGGTTGCTCC+TGG | + | tig0021785:76534-76553 | None:intergenic | 55.0% | |
| AGAACGAACTGGGCGTGCCT+TGG | - | tig0021785:76962-76981 | Msa1394180:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0021785 | gene | 74859 | 77319 | 74859 | ID=Msa1394180;Name=Msa1394180 |
| tig0021785 | mRNA | 74859 | 77319 | 74859 | ID=Msa1394180-mRNA-1;Parent=Msa1394180;Name=Msa1394180-mRNA-1;_AED=0.34;_eAED=0.36;_QI=0|0|0|1|0|0|6|0|731 |
| tig0021785 | exon | 77158 | 77319 | 77158 | ID=Msa1394180-mRNA-1:exon:14209;Parent=Msa1394180-mRNA-1 |
| tig0021785 | exon | 76868 | 77077 | 76868 | ID=Msa1394180-mRNA-1:exon:14208;Parent=Msa1394180-mRNA-1 |
| tig0021785 | exon | 76739 | 76863 | 76739 | ID=Msa1394180-mRNA-1:exon:14207;Parent=Msa1394180-mRNA-1 |
| tig0021785 | exon | 76387 | 76613 | 76387 | ID=Msa1394180-mRNA-1:exon:14206;Parent=Msa1394180-mRNA-1 |
| tig0021785 | exon | 76196 | 76353 | 76196 | ID=Msa1394180-mRNA-1:exon:14205;Parent=Msa1394180-mRNA-1 |
| tig0021785 | exon | 74859 | 76172 | 74859 | ID=Msa1394180-mRNA-1:exon:14204;Parent=Msa1394180-mRNA-1 |
| tig0021785 | CDS | 77158 | 77319 | 77158 | ID=Msa1394180-mRNA-1:cds;Parent=Msa1394180-mRNA-1 |
| tig0021785 | CDS | 76868 | 77077 | 76868 | ID=Msa1394180-mRNA-1:cds;Parent=Msa1394180-mRNA-1 |
| tig0021785 | CDS | 76739 | 76863 | 76739 | ID=Msa1394180-mRNA-1:cds;Parent=Msa1394180-mRNA-1 |
| tig0021785 | CDS | 76387 | 76613 | 76387 | ID=Msa1394180-mRNA-1:cds;Parent=Msa1394180-mRNA-1 |
| tig0021785 | CDS | 76196 | 76353 | 76196 | ID=Msa1394180-mRNA-1:cds;Parent=Msa1394180-mRNA-1 |
| tig0021785 | CDS | 74859 | 76172 | 74859 | ID=Msa1394180-mRNA-1:cds;Parent=Msa1394180-mRNA-1 |
| Gene Sequence |
| Protein sequence |
