AlfalfaGEDB | Msa1395030

M. sativa cultivar zhongmu-4 / Msa1395030

KEGG: K04730
GO: GO:0002218 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0002764 GO:0003674 GO:0003824 GO:0004672 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008219 GO:0009595 GO:0009605 GO:0009607 GO:0009617 GO:0009626 GO:0009987 GO:0010204 GO:0010359 GO:0012501 GO:0012505 GO:0016020 GO:0016045 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0022898 GO:0023052 GO:0031347 GO:0031349 GO:0032409 GO:0032412 GO:0032879 GO:0033554 GO:0034050 GO:0034762 GO:0034765 GO:0036211 GO:0038023 GO:0043170 GO:0043207 GO:0043269 GO:0043412 GO:0044070 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0045087 GO:0045088 GO:0045089 GO:0048518 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050896 GO:0051049 GO:0051606 GO:0051704 GO:0051707 GO:0051716 GO:0060089 GO:0065007 GO:0065009 GO:0071704 GO:0071944 GO:0080134 GO:0098543 GO:0098581 GO:0140096 GO:1901564 GO:1903959
PFAM: PF08263.15

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1395030	XP_003630002.3	94.611	1002	52	1	1	1002	11	1010	0.0	1907

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1395030	sp\|C0LGP4\|Y3475_ARATH	41.835	992	544	14	38	1008	24	1003	0.0	689

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1395030	G7L9K4	94.611	1002	52	1	1	1002	11	1010	0.0	1907

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0658100	Msa1395030	0.935556	7.045593e-97	-8.615850e-47
Msa0702950	Msa1395030	0.934385	4.383621e-96	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
Msa1395030	MtrunA17_Chr8g0380941	94.611	1002	52	1	1	1002	1	1000	1905
Msa1395030	MtrunA17_Chr8g0380951	88.119	1010	87	2	1	1010	1	977	1767
Msa1395030	MtrunA17_Chr2g0300201	41.776	991	546	13	38	1007	42	1022	710
Msa1395030	MtrunA17_Chr6g0464211	41.400	1000	554	14	29	1007	33	1021	709
Msa1395030	MtrunA17_Chr6g0464171	41.068	1030	573	15	1	1007	4	1022	706
Msa1395030	MtrunA17_Chr8g0367351	40.837	1004	572	9	24	1009	21	1020	703
Msa1395030	MtrunA17_Chr6g0464141	41.153	989	556	13	38	1007	42	1023	703
Msa1395030	MtrunA17_Chr7g0241921	40.762	1023	548	10	9	1006	13	1002	696
Msa1395030	MtrunA17_Chr5g0408621	41.046	994	562	11	31	1007	70	1056	696
Msa1395030	MtrunA17_Chr5g0408611	40.845	994	564	13	31	1007	23	1009	694

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1395030	AT3G47570.1	41.835	992	544	14	38	1008	24	1003	0.0	689
Msa1395030	AT5G20480.1	41.369	1008	546	15	23	1007	16	1001	0.0	674
Msa1395030	AT5G20480.2	41.369	1008	546	15	23	1007	16	1001	0.0	674
Msa1395030	AT3G47580.1	40.741	999	546	15	38	1008	24	1004	0.0	657
Msa1395030	AT3G47110.1	42.886	1005	540	14	27	1008	28	1021	0.0	656
Msa1395030	AT3G47090.1	40.483	993	555	15	38	1008	24	1002	0.0	655
Msa1395030	AT2G24130.2	38.575	884	478	18	160	989	86	958	4.14e-151	474
Msa1395030	AT2G24130.2	33.030	330	180	8	97	419	275	570	7.07e-25	112
Msa1395030	AT2G24130.1	38.575	884	478	18	160	989	71	943	4.46e-151	474
Msa1395030	AT2G24130.1	33.030	330	180	8	97	419	260	555	8.19e-25	112

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Find 240 sgRNAs with CRISPR-Local

Find 292 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATGAGGGATAGAAGCTG+AGG	0.641903	tig0021904:-33152	None:intergenic
AAACAATGAATTTCTGGCTT+TGG	0.313137	tig0021904:+32176	Msa1395030:CDS
AAACAGTTGCTGAATGAGCT+GGG	0.494937	tig0021904:-31324	None:intergenic
AAACATTAGGGTCATTCGTA+TGG	0.549478	tig0021904:+30606	Msa1395030:CDS
AAACCAAAAGGTTGTTGAAA+TGG	0.370582	tig0021904:-29760	None:intergenic
AAAGCTCTTGGAGATGTGAA+AGG	0.577007	tig0021904:+31399	Msa1395030:CDS
AAAGGAGTTAGGTCGGTTAG+AGG	0.410987	tig0021904:+30966	Msa1395030:CDS
AAAGGTTGGAGACTTTGGTT+TGG	0.475582	tig0021904:+32410	Msa1395030:CDS
AAATCTCTCTAATGTCCACT+TGG	0.562712	tig0021904:+31560	Msa1395030:CDS
AAATGAGGGATAGAAGCTGA+GGG	0.668134	tig0021904:-33151	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAACCAAAAGGTTGTTGAAA+TGG	-	tig0021904:29763-29782	None:intergenic	30.0%
AGGACATGTTACCTATATAA+GGG	-	tig0021904:30006-30025	None:intergenic	30.0%
GAAATATTTCCTAGAGATTG+TGG	-	tig0021904:30295-30314	None:intergenic	30.0%
AGTTTATGACCAACATCATA+AGG	-	tig0021904:30511-30530	None:intergenic	30.0%
GTATAATATTGAGAGTTCCT+TGG	-	tig0021904:30842-30861	None:intergenic	30.0%
GGAACTCTCAATATTATACA+TGG	+	tig0021904:30843-30862	Msa1395030:CDS	30.0%
TTGAGCTACAATTCAATTAG+TGG	+	tig0021904:30934-30953	Msa1395030:CDS	30.0%
AATTAGTGGAGATATTCCAA+AGG	+	tig0021904:30948-30967	Msa1395030:CDS	30.0%
TTAAGATTACCAAGAGAGTT+TGG	-	tig0021904:31039-31058	None:intergenic	30.0%
TTGTCAAGAAATGAACTTGT+AGG	+	tig0021904:31078-31097	Msa1395030:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
tig0021904	gene	29707	33463	29707	ID=Msa1395030;Name=Msa1395030
tig0021904	mRNA	29707	33463	29707	ID=Msa1395030-mRNA-1;Parent=Msa1395030;Name=Msa1395030-mRNA-1;_AED=0.01;_eAED=0.01;_QI=0\|0.5\|0.33\|1\|1\|1\|3\|123\|1010
tig0021904	exon	29707	31776	29707	ID=Msa1395030-mRNA-1:exon:14666;Parent=Msa1395030-mRNA-1
tig0021904	exon	31919	32519	31919	ID=Msa1395030-mRNA-1:exon:14667;Parent=Msa1395030-mRNA-1
tig0021904	exon	32979	33463	32979	ID=Msa1395030-mRNA-1:exon:14668;Parent=Msa1395030-mRNA-1
tig0021904	CDS	29707	31776	29707	ID=Msa1395030-mRNA-1:cds;Parent=Msa1395030-mRNA-1
tig0021904	CDS	31919	32519	31919	ID=Msa1395030-mRNA-1:cds;Parent=Msa1395030-mRNA-1
tig0021904	CDS	32979	33340	32979	ID=Msa1395030-mRNA-1:cds;Parent=Msa1395030-mRNA-1
tig0021904	three_prime_UTR	33341	33463	33341	ID=Msa1395030-mRNA-1:three_prime_utr;Parent=Msa1395030-mRNA-1

Gene Sequence

>Msa1395030

ATGGCTTTGTTTTCTCATTTACTTCTTCATTTTGCCTTATTAATGATCTTTATCCATTTCAACAACCTTTTGGTTTGTGTCTCATCAAGTTCAACCACTCTAAGCATTACCACAGACAGAGAAGCCTTAATCTCAATAAAATCTCAGTCAAGCAATAATTACACTTCTCCTCACCCATTATCCTCTTGGATCCATAATTCATCTCCTTGCAACTGGACTGGTGTCCTATGTGACAAGCATAACCAAAGAGTGACTAGCTTGGATCTTTCAGGCTTTGGACTCTCAGGTAACTTGAGCCCTTATATAGGTAACATGTCCTCTCTTCACTCCCTCCAATTGCAGGATAACCAGCTCACAGGACTCATTCCTAACCAAATTACCAATCTATATAATTTGAGAGTTCTAAATATGAGTTCCAACAGATTTGAAGGAATGATGTTTCCTTCAAATCTTACCAATTTAGATGAGCTTCAAATTCTTGATTTATCCTCAAACAAGATTGTAAGCAGAATTCCTGAACATATCAGCAGCTTGAAAAAGCTGCAGGTGTTGAAACTTGGAAAGAATAGCTTCTATGGTACAATTCCACAATCTCTAGGAAATATTTCTACTCTAAAAAATATTAGTTTTGGCACCAACTCTCTTAGTGGTTGGATTCCTAGTGACTTAGGTAGATTACATAATTTAATTGAGCTTGATCTCACTCTTAACAATCTAACTGGAACTGTTCCACCTGTTATATATAATTTGTCTTCCCTTGTTAACTTGGCCTTAGCTGCAAATTCCTTTTGGGGTGAGATTCCTTATGATGTTGGTCATAAACTTCCAAAACTACTAGTTTTCAATTTTTGTTTCAATAAGTTCACAGGTAGAATTCCAGGGTCTTTACATAACCTAACAAACATTAGGGTCATTCGTATGGCCTCTAACCATTTGGAAGGAACAGTTCCACCTGGTTTAGGAAATCTCCCATTTCTTCACATGTATAATATTGGCTATAACAGGATAGTCACCTCAGGAGTCAATGGTCTGAATTTCATTACTTCGTTGACAAACAGTACTCACTTGAACTTTCTCGCAATTGATGGAAACATGCTCGAAGGTGTTATTCCTGAAACCATTGGAAATCTCTCCAAGGAACTCTCAATATTATACATGGGAGAGAATCGTTTCAATGGAAGTATACCATCGTCAATTTCTCGTCTTAGTGGCTTGAAGTTGTTAAACTTGAGCTACAATTCAATTAGTGGAGATATTCCAAAGGAGTTAGGTCGGTTAGAGGAACTACAAGGGCTGTATCTGGATGGAAATAAGATATCAGGAGCTATTCCAAACTCTCTTGGTAATCTTAAGAAGTTAAACAAGATTGATTTGTCAAGAAATGAACTTGTAGGTAGAATACCAATTAGTTTTGGTAATTTTCAAAACCTGCTCTACATGGACTTATCTAGGAATAAGCTTAATGGAAGCATACCTGTGGTAATCCTCAATCTACCAACTTTGAGCAATGTTTTAAACTTATCAAAGAACTTGTTGAGTGGACCAATACCTGAAGTTGGGAAATTGACAACCATTTCCACCATTGACTTTTCCAACAACCAATTGTATGGAAACATCCCCAGCTCATTCAGCAACTGTTTGAGCTTGGAGAAATTGTTTTTGTCCCAAAATATGCTTTCAGGTTACATTCCAAAAGCTCTTGGAGATGTGAAAGGCTTGGAAACTTTGGACTTGTCCTCCAACCTACTCTCAGGACCCATTCCTATTGAACTTCGAAATTTGCATGTCCTTCAACTTTTAAACCTCTCTTACAATGATCTCGAAGGAGACATTCCTAGTGGTGGAGTTTTCCAAAATCTCTCTAATGTCCACTTGGAAGGCAACAAAAAACTATGCTTGCATTTTGCATGTGTGCCTCAAGTTCATAAAAGATCAAGTGTTAGATTTTATATCATCATAGCTATTGTGGTAACAATGGTACTATGTCTCACAATTGGTTTGCTACTATACATGAAGTATACAAAGGTGAAGGTAACAGAAACATCAACATCTGAACAGCTAAAGCCACAGGCTCCAACGGTCTCTTACGACGAGCTTCGCTTGGCAACTGAAGAGTTCAGCCAAGAAAATTTAATAGGAATTGGGAGTTTCGGAACAGTGTATAAAGGCCATCTATGTCAGGGAAATAATACTGTTGCAGTGAAAGTGCTTGATACTTCAAGAACAGGATTTTTAAAGAGTTTCTTTGCAGAGTGTGAGGCCATGAAAAATTCAAGGCATAGAAATCTGGTTAAGCTAATCACATCATGCTCTAGTGTTGACTTTAGAAACAATGAATTTCTGGCTTTGGTGTACGAGTATTTAAGTAATGGCAGCTTGGAAGATTGGATTAAGGGGAGGAGAAATCATGCAAATGGAAATGGTTTGAATCTTATGGAGAGACTGAATATAGCTATAGATGTTGCCTGTGCATTAGATTACCTGCACAATGATAGTGAAACTCCTATTGTGCACTGTGATCTGAAGCCAAGTAATATTCTCCTGGATGAAGATATGACTGCAAAGGTTGGAGACTTTGGTTTGGCAAGGTTGCTGATTCAAAGACCAACTAATCAAGTTTCCATCAGCTCTACTCATGTTCTTAGAGGTTCAATTGGTTACATACCTCCAGAGTATGGATGGGGAGAGAAACCTTCAGCAGCAGGGGATGTATACAGTTTTGGGATAGTGCTGCTTGAACTTTTTTCTGGGAAAAGTCCACAAGATGATTGCTTCACTGGAGGCCAGGGCATAACAAAATGGGTGCAGTCAGCATTCAAAAACAAGACTGTACAGGTCATCGACCCTCAGCTTCTATCCCTCATTTTCCATGATGATTCTGCTACAGACTCCAATCTACAACTTCATTGTGTGGATGCAATTATGGGAGTTGGACTGTCCTGCACTTCTGAAAATCCAGATGAACGCATTGGCATAAGAGTTGCGGTTCGCCAACTAATAGCTGCTAGGGACTCTCTTCTGAAAAAAATCTGA

Protein sequence

>Msa1395030

MALFSHLLLHFALLMIFIHFNNLLVCVSSSSTTLSITTDREALISIKSQSSNNYTSPHPLSSWIHNSSPCNWTGVLCDKHNQRVTSLDLSGFGLSGNLSPYIGNMSSLHSLQLQDNQLTGLIPNQITNLYNLRVLNMSSNRFEGMMFPSNLTNLDELQILDLSSNKIVSRIPEHISSLKKLQVLKLGKNSFYGTIPQSLGNISTLKNISFGTNSLSGWIPSDLGRLHNLIELDLTLNNLTGTVPPVIYNLSSLVNLALAANSFWGEIPYDVGHKLPKLLVFNFCFNKFTGRIPGSLHNLTNIRVIRMASNHLEGTVPPGLGNLPFLHMYNIGYNRIVTSGVNGLNFITSLTNSTHLNFLAIDGNMLEGVIPETIGNLSKELSILYMGENRFNGSIPSSISRLSGLKLLNLSYNSISGDIPKELGRLEELQGLYLDGNKISGAIPNSLGNLKKLNKIDLSRNELVGRIPISFGNFQNLLYMDLSRNKLNGSIPVVILNLPTLSNVLNLSKNLLSGPIPEVGKLTTISTIDFSNNQLYGNIPSSFSNCLSLEKLFLSQNMLSGYIPKALGDVKGLETLDLSSNLLSGPIPIELRNLHVLQLLNLSYNDLEGDIPSGGVFQNLSNVHLEGNKKLCLHFACVPQVHKRSSVRFYIIIAIVVTMVLCLTIGLLLYMKYTKVKVTETSTSEQLKPQAPTVSYDELRLATEEFSQENLIGIGSFGTVYKGHLCQGNNTVAVKVLDTSRTGFLKSFFAECEAMKNSRHRNLVKLITSCSSVDFRNNEFLALVYEYLSNGSLEDWIKGRRNHANGNGLNLMERLNIAIDVACALDYLHNDSETPIVHCDLKPSNILLDEDMTAKVGDFGLARLLIQRPTNQVSISSTHVLRGSIGYIPPEYGWGEKPSAAGDVYSFGIVLLELFSGKSPQDDCFTGGQGITKWVQSAFKNKTVQVIDPQLLSLIFHDDSATDSNLQLHCVDAIMGVGLSCTSENPDERIGIRVAVRQLIAARDSLLKKI*