AlfalfaGEDB | Msa1399710

M. sativa cultivar zhongmu-4 / Msa1399710

KEGG: K04730
GO: GO:0000003 GO:0000902 GO:0000904 GO:0001558 GO:0003006 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009653 GO:0009826 GO:0009846 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0010769 GO:0016020 GO:0016043 GO:0016049 GO:0016301 GO:0016310 GO:0016324 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0022414 GO:0022603 GO:0022604 GO:0030154 GO:0032501 GO:0032502 GO:0032989 GO:0036211 GO:0040007 GO:0040008 GO:0042995 GO:0043170 GO:0043412 GO:0043900 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044425 GO:0044459 GO:0044464 GO:0044706 GO:0045177 GO:0045595 GO:0048468 GO:0048588 GO:0048589 GO:0048638 GO:0048856 GO:0048868 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0051128 GO:0051239 GO:0051510 GO:0051704 GO:0060284 GO:0060560 GO:0065007 GO:0071704 GO:0071840 GO:0071944 GO:0080092 GO:0090406 GO:0098590 GO:0120025 GO:0140096 GO:1901564 GO:2000241
PFAM: PF08263.15

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1399710	AET05078.1	96.141	622	24	0	1	622	1	622	0.0	1178

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1399710	sp\|C0LGU0\|PRK1_ARATH	52.848	632	264	10	11	620	13	632	0.0	636

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1399710	G7LIV0	96.141	622	24	0	1	622	1	622	0.0	1178

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0573240	Msa1399710	0.889558	2.175049e-73	-8.615850e-47
Msa0706980	Msa1399710	0.863584	2.242123e-64	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1399710	MtrunA17_Chr8g0388991	96.141	622	24	0	1	622	1	622	0.0	1178
Msa1399710	MtrunA17_Chr2g0334251	48.287	642	295	10	10	618	16	653	0.0	581
Msa1399710	MtrunA17_Chr1g0147701	45.666	646	295	12	3	620	1	618	0.0	542
Msa1399710	MtrunA17_Chr8g0379571	45.687	626	304	12	13	621	54	660	0.0	529
Msa1399710	MtrunA17_Chr6g0488771	62.255	408	144	4	224	621	5	412	2.82e-171	494
Msa1399710	MtrunA17_Chr4g0070291	38.547	633	349	10	15	617	4	626	4.45e-150	447
Msa1399710	MtrunA17_Chr8g0344471	36.907	653	346	8	25	617	25	671	2.42e-141	428
Msa1399710	MtrunA17_Chr3g0128551	34.439	633	360	15	12	617	11	615	8.12e-103	325
Msa1399710	MtrunA17_Chr1g0209521	35.071	633	362	12	21	617	19	638	1.67e-101	323
Msa1399710	MtrunA17_Chr5g0432851	35.387	633	353	18	14	621	31	632	3.43e-101	321

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1399710	AT5G35390.1	52.848	632	264	10	11	620	13	632	0.0	636
Msa1399710	AT2G07040.1	51.189	631	269	12	12	621	6	618	0.0	614
Msa1399710	AT4G31250.1	46.573	642	303	10	12	620	9	643	0.0	583
Msa1399710	AT3G20190.1	48.352	637	291	9	12	618	20	648	0.0	577
Msa1399710	AT1G50610.1	46.698	636	285	14	20	618	32	650	3.88e-174	511
Msa1399710	AT3G42880.1	35.368	639	368	12	12	616	4	631	4.09e-135	409
Msa1399710	AT5G20690.1	34.003	647	361	11	25	617	24	658	5.53e-127	389
Msa1399710	AT3G20190.2	48.184	413	190	5	224	618	53	459	5.23e-124	375
Msa1399710	AT2G26730.1	36.877	602	325	13	53	622	47	625	7.21e-109	342
Msa1399710	AT1G68400.1	35.285	632	340	14	31	617	30	637	1.30e-100	321

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Find 154 sgRNAs with CRISPR-Local

Find 261 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGAAAAGAGGAGCTGCT+AGG	0.560012	tig0022394:+22695	None:intergenic
AAAAGTGATGTTTGGTGTCT+TGG	0.365052	tig0022394:-19706	Msa1399710:CDS
AAACTAAGCGTTCTAAGATA+TGG	0.387891	tig0022394:+22295	None:intergenic
AAAGAAAAGAGGAGCTGCTA+GGG	0.508313	tig0022394:+22696	None:intergenic
AAAGAATGGTGAGGGAGAGA+TGG	0.495460	tig0022394:-19533	Msa1399710:CDS
AAAGCTTATGGATTTGAGAT+TGG	0.409321	tig0022394:-22077	Msa1399710:CDS
AAATTCAACAAGTGAAAGAG+AGG	0.588820	tig0022394:-19432	Msa1399710:CDS
AACAAATCAAGAAATGGCCA+AGG	0.605343	tig0022394:-19785	Msa1399710:CDS
AACCTCTTCACCACTATTGT+TGG	0.377074	tig0022394:+20834	None:intergenic
AAGAAAAGAGGAGCTGCTAG+GGG	0.707316	tig0022394:+22697	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ATAATGTATTTGAGAGAGTG+AGG	+	tig0022394:19292-19311	None:intergenic	30.0%
TTGTTATCAAGGAAACGTTT+GGG	-	tig0022394:19729-19748	Msa1399710:CDS	30.0%
AATCTCAAATCCATAAGCTT+TGG	+	tig0022394:20033-20052	None:intergenic	30.0%
GTTGTGGATTTGACAAAATT+TGG	-	tig0022394:20398-20417	Msa1399710:intron	30.0%
TATGTATCAAAATGATGAGC+AGG	-	tig0022394:20834-20853	Msa1399710:CDS	30.0%
GCAGGTAATGAAAATTTATG+TGG	-	tig0022394:20852-20871	Msa1399710:CDS	30.0%
CACTACAACAACAAAAAAGT+TGG	-	tig0022394:21047-21066	Msa1399710:CDS	30.0%
CTATAATAGTAAGCAACAAG+AGG	+	tig0022394:21383-21402	None:intergenic	30.0%
ATATATAAGACGTACCATGA+AGG	+	tig0022394:21463-21482	None:intergenic	30.0%
AGCCAAACTTCATATCATTA+GGG	-	tig0022394:21582-21601	Msa1399710:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
tig0022394	gene	19251	22880	19251	ID=Msa1399710;Name=Msa1399710
tig0022394	mRNA	19251	22880	19251	ID=Msa1399710-mRNA-1;Parent=Msa1399710;Name=Msa1399710-mRNA-1;_AED=0.38;_eAED=0.38;_QI=266\|1\|0.66\|1\|1\|1\|3\|169\|622
tig0022394	exon	19251	20003	19251	ID=Msa1399710-mRNA-1:exon:17416;Parent=Msa1399710-mRNA-1
tig0022394	exon	20664	21275	20664	ID=Msa1399710-mRNA-1:exon:17415;Parent=Msa1399710-mRNA-1
tig0022394	exon	21942	22880	21942	ID=Msa1399710-mRNA-1:exon:17414;Parent=Msa1399710-mRNA-1
tig0022394	five_prime_UTR	22615	22880	22615	ID=Msa1399710-mRNA-1:five_prime_utr;Parent=Msa1399710-mRNA-1
tig0022394	CDS	21942	22614	21942	ID=Msa1399710-mRNA-1:cds;Parent=Msa1399710-mRNA-1
tig0022394	CDS	20664	21275	20664	ID=Msa1399710-mRNA-1:cds;Parent=Msa1399710-mRNA-1
tig0022394	CDS	19420	20003	19420	ID=Msa1399710-mRNA-1:cds;Parent=Msa1399710-mRNA-1
tig0022394	three_prime_UTR	19251	19419	19251	ID=Msa1399710-mRNA-1:three_prime_utr;Parent=Msa1399710-mRNA-1

Gene Sequence

>Msa1399710

ATGGCACTCATCACTCATATTATGAACAATAATATCATATTCATCACATTCATTCTCTTGTTTTGTGTTGTTTCGTTATCTTATGGTGCTTCTGACTCTGAATTGCTCCTCAAGGTAAAGGACAATCTTGAAAAAAACCCTGAGGTATTGTCAACATGGAACACGTCAACCACACCTTGTAATGGTGATCATGCCAATTGGCGTGGTGTTCTTTGTTATCAAGGAAACGTTTGGGGATTGAAGCTTGAGAATATGGGGCTAAAAGGTTTCATTGATGTGAGTTCTCTTAGGGAGTTACCATATCTTAGAACGCTTAGTTTCATGAATAATGATTTTGAGGGTGGTTGGCCTGAGATTAATAAACTTTTTGGTCTTAAATCGCTTTATCTGTCAAATAACAAATTTTCTGGAGAGCTTCCTGAGGATGCTTTTGACGGTATGCAGTGGTTAAAGAAAATTCATTTGTCAAATAATCAGTTTACAGGTCGTATTCCATATTCTGTGAGGTTGATGCCAAAGCTTATGGATTTGAGATTGGATGGAAACAAATTCACTGGACCTCTTCCTCCTTTTACAACAGAATCCAAATTGAAAACAATCAATGTAGCTAATAATCAGTTGCAGGGACCAATACCAGCCGCTCTTAGTAAAATCGACGCTTCTTCCTTTTCCGGTAATGAAAATTTATGTGGAGCACCATTGACTGCATGTCCTATAAAGCATGCATCAATTGCAAGTATTTGTGTTGTTGTTGTGGTTGTTTGTGTAGCACTGGCTGTGATTGGAGTTACTGTGTTTTTCATCCTACACCGGCGGCGAAGAAAACGAGAGCCATCATCGACTCTAGAGAATCCACCTTCAGGCCACTACAACAACAAAAAAGTTGGAAGTGAAAGAGATATTGATGATGAAAGTAATAGATCATCGAGATCAATGAGTTCCAACCACAGTAGAAGAAATGATCACATGAAGTTGTCTTTTATAAGAGATGACAGAGAGAGGTTTGATTTGCAAGAGTTGCTGAGAGCTTCTGCTGAGATTTTGGGAAGTGGTTTTTATAGTTCTTCTTACAAGGCTTCTTTGACGAATGGGCCAACAATAGTGGTGAAGAGGTTTAAGCAAATGAACAATGTAGGGAAGGAAGAGTTTCAAGAGCATATGAGAAGGATTGGAAGGTTGAACCATCCTAATTTGATTCCTCTTGTTGCTTACTATTATAGAAAAGAAGAGAAGCTCTTGGTTACTGACTTTGTTCAGAACGGTAGCCTAGCTGTTCGCCTTCATGGACACCAAGCGCTAGGGGAACCAAGCCTTGATTGGCCAATAAGGTTGAAAATTGTGAAAGGCATAGCAAGAGGTCTTGAAAATCTATACAAAGATATGCCAAGCCTAATTGCACCTCATGGAAATCTCAAATCTGCAAACGTACTTCTCACTGAAACATTTGAGCCACTTCTCACAGATTTTGGATTAGTCCCAGTAACAAATCAAGAAATGGCCAAGGAAATAATGGTAATATACAAATCACCTGAGTATTTGCAACATGGAAGAATCACAAAGAAAAGTGATGTTTGGTGTCTTGGAATATTAATATTGGAGATTTTAACTGGTAAACTTCCAGCTACATTTTTACAACAAGGTAAAGGAAGTGAGGTGAGTTTAGCAAATTGGGTGATTTCAGTAGTACCTGAGGAGTGGAATAGTTCAGTGTTTGATAAAGAAATGGGTGCAACAAAGAATGGTGAGGGAGAGATGGGAAAGCTTTTGAAGATTGCATTGAGTTGTTGTGAAGTAGATGTTGATAAAAGATGTGATTTGAAAGAAGCTGTTGAGAAAATTCAACAAGTGAAAGAGAGGGATAATTCATGA

Protein sequence

>Msa1399710

MALITHIMNNNIIFITFILLFCVVSLSYGASDSELLLKVKDNLEKNPEVLSTWNTSTTPCNGDHANWRGVLCYQGNVWGLKLENMGLKGFIDVSSLRELPYLRTLSFMNNDFEGGWPEINKLFGLKSLYLSNNKFSGELPEDAFDGMQWLKKIHLSNNQFTGRIPYSVRLMPKLMDLRLDGNKFTGPLPPFTTESKLKTINVANNQLQGPIPAALSKIDASSFSGNENLCGAPLTACPIKHASIASICVVVVVVCVALAVIGVTVFFILHRRRRKREPSSTLENPPSGHYNNKKVGSERDIDDESNRSSRSMSSNHSRRNDHMKLSFIRDDRERFDLQELLRASAEILGSGFYSSSYKASLTNGPTIVVKRFKQMNNVGKEEFQEHMRRIGRLNHPNLIPLVAYYYRKEEKLLVTDFVQNGSLAVRLHGHQALGEPSLDWPIRLKIVKGIARGLENLYKDMPSLIAPHGNLKSANVLLTETFEPLLTDFGLVPVTNQEMAKEIMVIYKSPEYLQHGRITKKSDVWCLGILILEILTGKLPATFLQQGKGSEVSLANWVISVVPEEWNSSVFDKEMGATKNGEGEMGKLLKIALSCCEVDVDKRCDLKEAVEKIQQVKERDNS*