AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1402640

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 116 sgRNAs with CRISPR-Local

Find 327 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGAGGAACTCAAACAATTTA+AGG 0.163299 tig0022882:+39964 Msa1402640:CDS
GAATTTCAAATTCGAATTTA+TGG 0.182017 tig0022882:+39532 Msa1402640:five_prime_UTR
GTCCACAATCACATTTAAAT+TGG 0.209735 tig0022882:-40517 None:intergenic
TTGCGGGTCCATGGAGAATT+TGG 0.235128 tig0022882:+37142 Msa1402640:five_prime_UTR
GGGTGAATTTAGGACTAAAT+AGG 0.238968 tig0022882:+39711 Msa1402640:five_prime_UTR
GTGAACTCCTTGAACATTTC+CGG 0.239784 tig0022882:-38642 None:intergenic
TTAGAAACTAAGCAACTAAA+AGG 0.250761 tig0022882:-42142 None:intergenic
GCTTACGAGAGGGTGAATTT+AGG 0.294219 tig0022882:+39701 Msa1402640:five_prime_UTR
GTCAGGGTCGGCGCGTTTCA+TGG 0.308268 tig0022882:+37252 Msa1402640:five_prime_UTR
GGTGAATTTAGGACTAAATA+GGG 0.309034 tig0022882:+39712 Msa1402640:five_prime_UTR
TCCTTGTTTGTGTTTGTTGC+CGG 0.322987 tig0022882:-37651 None:intergenic
TCACATTTAAATTGGCCATT+TGG 0.332786 tig0022882:-40509 None:intergenic
AGAGTACCTTTGATTGTGTC+AGG 0.339380 tig0022882:+37235 Msa1402640:five_prime_UTR
GACCAAGCATTTGACATTGT+TGG 0.343423 tig0022882:-39908 None:intergenic
GACAAGCAGTAAAAGTTTAT+CGG 0.363077 tig0022882:-37212 None:intergenic
AAAGCAGCAAAAGGGGCTTC+TGG 0.369451 tig0022882:-42076 None:intergenic
TGAAAACTTTCTTCTGATAC+AGG 0.377739 tig0022882:-39559 None:intergenic
CAATCTGTTTCAGCTTGAAT+AGG 0.382751 tig0022882:-37586 None:intergenic
GAGGGAAAACCCTTGCAAAT+TGG 0.399141 tig0022882:-37058 None:intergenic
ACAATGTCAAATGCTTGGTC+TGG 0.403543 tig0022882:+39911 Msa1402640:exon
TAAAACAGTAAAGCTGCAAC+AGG 0.406325 tig0022882:-42118 None:intergenic
TTCCTCAAGTCCCTCTAGTT+AGG 0.416195 tig0022882:-39512 None:intergenic
AAAGCTGCAACAGGGTAACT+TGG 0.424488 tig0022882:-42109 None:intergenic
AAATCCATAGCGTCTCTTGC+GGG 0.439000 tig0022882:+37126 Msa1402640:five_prime_UTR
TTGCAAAACTTCTTCATGAC+CGG 0.453391 tig0022882:+37632 Msa1402640:five_prime_UTR
TTGCAAATTGGTCGATCTAC+AGG 0.455816 tig0022882:-37046 None:intergenic
TCCATGGAGAATTTGGTGTC+AGG 0.459130 tig0022882:+37149 Msa1402640:five_prime_UTR
GTGCCAAGCTTCTGACTTGG+TGG 0.463887 tig0022882:-42018 None:intergenic
GCCACGTGGGAGGTGTATAG+AGG 0.471146 tig0022882:+36919 Msa1402640:five_prime_UTR
AAATTGTTTGAGTTCCTCAA+TGG 0.471669 tig0022882:-39960 None:intergenic
GCAAAAGGGGCTTCTGGAGG+TGG 0.472719 tig0022882:-42070 None:intergenic
CTCCAACAATGTCAAATGCT+TGG 0.473618 tig0022882:+39906 Msa1402640:exon
GCTAAAATTAAGCCACCCTC+AGG 0.476976 tig0022882:+39766 Msa1402640:five_prime_UTR
ATCAATAAATCTTACAAGGA+AGG 0.477533 tig0022882:+37002 Msa1402640:five_prime_UTR
ACAAGCAGTAAAAGTTTATC+GGG 0.477726 tig0022882:-37211 None:intergenic
CTATTCAAGCTGAAACAGAT+TGG 0.478401 tig0022882:+37587 Msa1402640:five_prime_UTR
CAATGTCAAATGCTTGGTCT+GGG 0.486270 tig0022882:+39912 Msa1402640:exon
TAGCGTCTCTTGCGGGTCCA+TGG 0.489160 tig0022882:+37133 Msa1402640:five_prime_UTR
CAAGGTCCACCATGACTGTA+AGG 0.490493 tig0022882:-37178 None:intergenic
AACTGAACGTTCGTGGGTAG+AGG 0.492865 tig0022882:-37077 None:intergenic
CAAATCCATAGCGTCTCTTG+CGG 0.495008 tig0022882:+37125 Msa1402640:five_prime_UTR
ATATATGGTGGAAGGTGTCT+TGG 0.496015 tig0022882:+41928 Msa1402640:CDS
GTTTCAGCTTGAATAGGAGA+TGG 0.499512 tig0022882:-37580 None:intergenic
CAAGTCCCTCTAGCGAGGCT+TGG 0.500252 tig0022882:-39623 None:intergenic
TATTCAAGCTGAAACAGATT+GGG 0.504544 tig0022882:+37588 Msa1402640:five_prime_UTR
ATTTGAAAACTGAACGTTCG+TGG 0.514927 tig0022882:-37084 None:intergenic
TGAACATTTCCGGTGCACTA+AGG 0.516804 tig0022882:-38632 None:intergenic
AGGAAGGCTAAAACTCCAAA+TGG 0.517189 tig0022882:+40494 Msa1402640:CDS
ACCTTTGATTGTGTCAGGGT+CGG 0.518796 tig0022882:+37240 Msa1402640:five_prime_UTR
TAGTGCACCGGAAATGTTCA+AGG 0.520766 tig0022882:+38635 Msa1402640:five_prime_UTR
CATTTGACATTGTTGGAGCA+TGG 0.525905 tig0022882:-39901 None:intergenic
AGGGGCTTCTGGAGGTGGCA+CGG 0.526145 tig0022882:-42065 None:intergenic
TATTAATGATGATTCCATTG+AGG 0.530317 tig0022882:+39946 Msa1402640:CDS
AGGGTGAATTTCACATGAAG+TGG 0.535164 tig0022882:+39596 Msa1402640:five_prime_UTR
TAGAAACTAAGCAACTAAAA+GGG 0.539326 tig0022882:-42141 None:intergenic
ATTAATCAATAAATCTTACA+AGG 0.539810 tig0022882:+36998 Msa1402640:five_prime_UTR
GCCGTGCCACATGTTGGCAC+TGG 0.540574 tig0022882:-42043 None:intergenic
GGCCAATTTAAATGTGATTG+TGG 0.541689 tig0022882:+40515 Msa1402640:CDS
TTTCATTGGTACTTATAAGA+GGG 0.541716 tig0022882:+39577 Msa1402640:five_prime_UTR
TTTCAGCTTGAATAGGAGAT+GGG 0.542088 tig0022882:-37579 None:intergenic
TGGACCCGCAAGAGACGCTA+TGG 0.556214 tig0022882:-37130 None:intergenic
CCACGTGGGAGGTGTATAGA+GGG 0.556429 tig0022882:+36920 Msa1402640:five_prime_UTR
CCCTGACACCAAATTCTCCA+TGG 0.556606 tig0022882:-37150 None:intergenic
CCATGGAGAATTTGGTGTCA+GGG 0.559924 tig0022882:+37150 Msa1402640:five_prime_UTR
TTCCCACCAAGTCAGAAGCT+TGG 0.567540 tig0022882:+42015 Msa1402640:CDS
AGTGCGAAAATACGAAGATA+CGG 0.571149 tig0022882:+41980 Msa1402640:CDS
AAGGCTTTACTATTCTTCGA+AGG 0.573698 tig0022882:+37021 Msa1402640:five_prime_UTR
AACTCAAACAATTTAAGGAA+AGG 0.573878 tig0022882:+39969 Msa1402640:CDS
GCCGTGCCAAGCTTCTGACT+TGG 0.582353 tig0022882:-42021 None:intergenic
GGCACGGCCGTGCCACATGT+TGG 0.584181 tig0022882:-42049 None:intergenic
GCAGAGCAACCTTAGTGCAC+CGG 0.586537 tig0022882:+38623 Msa1402640:intron
AAGCTGCAACAGGGTAACTT+GGG 0.587165 tig0022882:-42108 None:intergenic
GTGAATTTAGGACTAAATAG+GGG 0.588267 tig0022882:+39713 Msa1402640:five_prime_UTR
TGTCTTGGAGCAAAAGAAAG+AGG 0.588846 tig0022882:+41943 Msa1402640:CDS
AGGGTAGATCCTTACAGTCA+TGG 0.589537 tig0022882:+37169 Msa1402640:five_prime_UTR
TGCCAAGCTTCTGACTTGGT+GGG 0.590863 tig0022882:-42017 None:intergenic
TCATCAACATTAGCATCACC+TGG 0.591889 tig0022882:+37991 Msa1402640:five_prime_UTR
AGGAACGAATATATGGTGGA+AGG 0.599653 tig0022882:+41920 Msa1402640:intron
TTTGAAAACTGAACGTTCGT+GGG 0.600541 tig0022882:-37083 None:intergenic
TGGAGCAAAAGAAAGAGGAC+TGG 0.601219 tig0022882:+41948 Msa1402640:CDS
GAGAACCAAGCCTCGCTAGA+GGG 0.603704 tig0022882:+39618 Msa1402640:five_prime_UTR
GCAGTAAAAGTTTATCGGGA+AGG 0.604212 tig0022882:-37207 None:intergenic
TTATCGGGAAGGAGCGAGCA+AGG 0.605530 tig0022882:-37196 None:intergenic
ACTGAACGTTCGTGGGTAGA+GGG 0.607686 tig0022882:-37076 None:intergenic
GTAGATCGACCAATTTGCAA+GGG 0.609149 tig0022882:+37049 Msa1402640:five_prime_UTR
TGTAGATCGACCAATTTGCA+AGG 0.610342 tig0022882:+37048 Msa1402640:five_prime_UTR
GCCAGTGCCAACATGTGGCA+CGG 0.611039 tig0022882:+42042 Msa1402640:CDS
CAAGCTGAAACAGATTGGGT+AGG 0.611478 tig0022882:+37592 Msa1402640:five_prime_UTR
GAGTACCTTTGATTGTGTCA+GGG 0.614624 tig0022882:+37236 Msa1402640:five_prime_UTR
ACCAAGTCAGAAGCTTGGCA+CGG 0.618933 tig0022882:+42020 Msa1402640:CDS
GTTTATACTAAACCTGAGGG+TGG 0.620466 tig0022882:-39778 None:intergenic
ACCGGCAACAAACACAAACA+AGG 0.627964 tig0022882:+37650 Msa1402640:five_prime_UTR
GCACGGCCAGTGCCAACATG+TGG 0.630678 tig0022882:+42037 Msa1402640:CDS
CTCCTCAAGTCCCTCTAGCG+AGG 0.636119 tig0022882:-39628 None:intergenic
GGAGAACCAAGCCTCGCTAG+AGG 0.636432 tig0022882:+39617 Msa1402640:five_prime_UTR
AATGTCAAATTGCAGGCTTG+GGG 0.640848 tig0022882:+39876 Msa1402640:intron
AGCCTAACTAGAGGGACTTG+AGG 0.643226 tig0022882:+39510 Msa1402640:five_prime_UTR
AGCCTCGCTAGAGGGACTTG+AGG 0.646190 tig0022882:+39626 Msa1402640:five_prime_UTR
GAGAACTAAGCCTAACTAGA+GGG 0.649306 tig0022882:+39502 Msa1402640:five_prime_UTR
ACAGCTGCACTAAATGCACC+AGG 0.652832 tig0022882:+40474 Msa1402640:intron
TTAAATCAAAGCCACGTGGG+AGG 0.661224 tig0022882:+36909 Msa1402640:five_prime_UTR
AGGTGATGCTAATGTTGATG+AGG 0.665671 tig0022882:-37989 None:intergenic
GGAGAACTAAGCCTAACTAG+AGG 0.665818 tig0022882:+39501 Msa1402640:five_prime_UTR
CTGCACTAAATGCACCAGGA+AGG 0.665837 tig0022882:+40478 Msa1402640:CDS
GCAGCAAAAGGGGCTTCTGG+AGG 0.666595 tig0022882:-42073 None:intergenic
GCCGACCCTGACACAATCAA+AGG 0.668703 tig0022882:-37241 None:intergenic
GAGGGGTGTACACAAAAGAG+TGG 0.677851 tig0022882:+36938 Msa1402640:five_prime_UTR
AAATGTTCAAGGAGTTCACA+TGG 0.681365 tig0022882:+38646 Msa1402640:five_prime_UTR
CCCTCTATACACCTCCCACG+TGG 0.682280 tig0022882:-36920 None:intergenic
CACGTGGGAGGTGTATAGAG+GGG 0.687994 tig0022882:+36921 Msa1402640:five_prime_UTR
AAAATTAAATCAAAGCCACG+TGG 0.705902 tig0022882:+36905 Msa1402640:five_prime_UTR
AAAACAGTAAAGCTGCAACA+GGG 0.707997 tig0022882:-42117 None:intergenic
AAATTAAATCAAAGCCACGT+GGG 0.713968 tig0022882:+36906 Msa1402640:five_prime_UTR
GTAGATCCTTACAGTCATGG+TGG 0.717900 tig0022882:+37172 Msa1402640:five_prime_UTR
AGGGTCGGCGCGTTTCATGG+CGG 0.720488 tig0022882:+37255 Msa1402640:five_prime_UTR
GGCAACAAACACAAACAAGG+AGG 0.739402 tig0022882:+37653 Msa1402640:five_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATTCATGAATAAAAAAAAA+AGG - tig0022882:38029-38048 None:intergenic 10.0%
!!! AAAATTGATTTATGTTTAAT+TGG - tig0022882:39998-40017 None:intergenic 10.0%
!! ATTATATATATCAATGTATT+TGG + tig0022882:41018-41037 Msa1402640:intron 10.0%
!! TAAATATTTATCAATGTATT+TGG + tig0022882:41110-41129 Msa1402640:intron 10.0%
!! ATTAATATTAATGTATTTGT+TGG + tig0022882:41134-41153 Msa1402640:intron 10.0%
!! TTAATATTAATGTATTTGTT+GGG + tig0022882:41135-41154 Msa1402640:intron 10.0%
!! TTAAAGTAAAATATTCTAAA+AGG - tig0022882:41880-41899 None:intergenic 10.0%
!!! ATTGTCTTTTATTTTATTTT+AGG + tig0022882:41900-41919 Msa1402640:intron 10.0%
!!! TGAATCAATTCAATTTTTTA+AGG - tig0022882:36979-36998 None:intergenic 15.0%
!! ATTAATCAATAAATCTTACA+AGG + tig0022882:36998-37017 Msa1402640:five_prime_UTR 15.0%
!! ATGAATAAAAAAAAAAGGAA+GGG - tig0022882:38024-38043 None:intergenic 15.0%
!!! TTTTTATATATACATGTCAT+CGG + tig0022882:38414-38433 Msa1402640:intron 15.0%
!! ATATATGTAAAATTGTTCTA+CGG + tig0022882:38881-38900 Msa1402640:intron 15.0%
!!! CTTTATACAATATGAATTTT+TGG + tig0022882:39117-39136 Msa1402640:intron 15.0%
!!! TACAAACTTTTTATTAAAGT+AGG - tig0022882:39222-39241 None:intergenic 15.0%
!! TCTTGAAATAATAGAAAATT+TGG - tig0022882:39329-39348 None:intergenic 15.0%
!! AATAAAAACTTTCATCTATT+AGG - tig0022882:39678-39697 None:intergenic 15.0%
!!! TAATAGATGAAAGTTTTTAT+TGG + tig0022882:39677-39696 Msa1402640:five_prime_UTR 15.0%
!!! CTTTTTATTTATAGCTTTTT+GGG + tig0022882:40172-40191 Msa1402640:intron 15.0%
!! CTAAATTAATAATAGAGAAT+TGG - tig0022882:40233-40252 None:intergenic 15.0%
!! CTGTTATTATTATTATTACA+AGG + tig0022882:40372-40391 Msa1402640:intron 15.0%
!! ATGATTTGATAAAATTAACT+TGG - tig0022882:40776-40795 None:intergenic 15.0%
!! TACTAATTCTATATGTAATT+TGG + tig0022882:40924-40943 Msa1402640:intron 15.0%
!!! TTTTTTATTGATAAACTCAT+TGG + tig0022882:40974-40993 Msa1402640:intron 15.0%
!!! ATATTACTTTGAATATTTTC+TGG + tig0022882:41065-41084 Msa1402640:intron 15.0%
!! ACTGACAAATTAAATAAACA+GGG - tig0022882:37347-37366 None:intergenic 20.0%
!! TACTGACAAATTAAATAAAC+AGG - tig0022882:37348-37367 None:intergenic 20.0%
!!! TTGTTTTTATCTACTTTTGT+AGG + tig0022882:37535-37554 Msa1402640:intron 20.0%
!!! ATTCTGAAATTGAGAATTAA+GGG - tig0022882:37702-37721 None:intergenic 20.0%
!!! TATTCTGAAATTGAGAATTA+AGG - tig0022882:37703-37722 None:intergenic 20.0%
!!! ATATGATTTTGTTCTTTCAA+AGG + tig0022882:37720-37739 Msa1402640:intron 20.0%
!! CATGAATAAAAAAAAAAGGA+AGG - tig0022882:38025-38044 None:intergenic 20.0%
!! TCTGATTAAAACAATAAAGA+AGG - tig0022882:38301-38320 None:intergenic 20.0%
!!! TATTTCTAAGTTTTCTCAAA+AGG + tig0022882:38329-38348 Msa1402640:intron 20.0%
!! TACAAATATTTGCTTTACTT+TGG - tig0022882:38382-38401 None:intergenic 20.0%
!! TAAAGCAAATATTTGTAGTA+TGG + tig0022882:38385-38404 Msa1402640:intron 20.0%
!! AACGATGTAAATCAAAATAA+AGG - tig0022882:38474-38493 None:intergenic 20.0%
!!! TATTTTGATTTACATCGTTA+TGG + tig0022882:38475-38494 Msa1402640:intron 20.0%
!! CATATTATAAAAAAACATGC+AGG - tig0022882:38604-38623 None:intergenic 20.0%
!! CAAATAAAACATATTTCCTA+TGG + tig0022882:38990-39009 Msa1402640:intron 20.0%
!!! AAAAGTGTATAATAGTAAGT+AGG - tig0022882:39260-39279 None:intergenic 20.0%
!! GAATTTCAAATTCGAATTTA+TGG + tig0022882:39532-39551 Msa1402640:five_prime_UTR 20.0%
!!! ACAATTTTCAGAGTTTTTAA+TGG - tig0022882:39832-39851 None:intergenic 20.0%
!!! TTAAAAACTCTGAAAATTGT+AGG + tig0022882:39832-39851 Msa1402640:intron 20.0%
!! CCAAAAAGCTATAAATAAAA+AGG - tig0022882:40174-40193 None:intergenic 20.0%
!!! CCTTTTTATTTATAGCTTTT+TGG + tig0022882:40171-40190 Msa1402640:intron 20.0%
!!! CTTTTTACTTGTTCAATTTA+TGG - tig0022882:40319-40338 None:intergenic 20.0%
!!! CATGTATATTTTTTTACCTT+GGG - tig0022882:40562-40581 None:intergenic 20.0%
!!! ACATGTATATTTTTTTACCT+TGG - tig0022882:40563-40582 None:intergenic 20.0%
!! ATGTTGGTGTAAATTTATAT+GGG - tig0022882:41448-41467 None:intergenic 20.0%
!! TATGTAAATGATGTTACATT+TGG - tig0022882:41471-41490 None:intergenic 20.0%
!! AAATGTAACATCATTTACAT+AGG + tig0022882:41470-41489 Msa1402640:intron 20.0%
!! AATGTAACATCATTTACATA+GGG + tig0022882:41471-41490 Msa1402640:intron 20.0%
!!! GTTAATTTGACTATGTAAAT+GGG - tig0022882:41650-41669 None:intergenic 20.0%
!!! AGTTAATTTGACTATGTAAA+TGG - tig0022882:41651-41670 None:intergenic 20.0%
!!! TTATTGTTTAACAACTTTTC+TGG - tig0022882:41687-41706 None:intergenic 20.0%
!!! TTATTTTAGGAACGAATATA+TGG + tig0022882:41913-41932 Msa1402640:intron 20.0%
! ATCAATAAATCTTACAAGGA+AGG + tig0022882:37002-37021 Msa1402640:five_prime_UTR 25.0%
! AAGGAACTCAATTATTCATA+TGG - tig0022882:37323-37342 None:intergenic 25.0%
! CTGACAAATTAAATAAACAG+GGG - tig0022882:37346-37365 None:intergenic 25.0%
!! GAAGTTTTGCAAATTCTTTT+TGG - tig0022882:37624-37643 None:intergenic 25.0%
! ACACAAAACATGAGAAAAAA+TGG - tig0022882:37755-37774 None:intergenic 25.0%
! TCAGATTTATTTGAAAAGAG+AGG + tig0022882:38160-38179 Msa1402640:intron 25.0%
! CAGATTTATTTGAAAAGAGA+GGG + tig0022882:38161-38180 Msa1402640:intron 25.0%
! CTGAACATACTCATAATAAA+AGG - tig0022882:38700-38719 None:intergenic 25.0%
!! TGCTATTAGTATTTCTATCT+TGG + tig0022882:38721-38740 Msa1402640:intron 25.0%
! GTGATTTCATTTATGAATGA+TGG + tig0022882:38743-38762 Msa1402640:intron 25.0%
! ACAAAACTGACATAATAGTT+TGG + tig0022882:38832-38851 Msa1402640:intron 25.0%
! CCATAAGAATTTAACCTAAA+CGG - tig0022882:39070-39089 None:intergenic 25.0%
!! CATATTTGTGAATTTTGAAC+TGG - tig0022882:39392-39411 None:intergenic 25.0%
! TGCAATAAAAAACAACAACA+TGG - tig0022882:39468-39487 None:intergenic 25.0%
!! TATCAGAAGAAAGTTTTCAT+TGG + tig0022882:39563-39582 Msa1402640:five_prime_UTR 25.0%
!! TTTTCATTGGTACTTATAAG+AGG + tig0022882:39576-39595 Msa1402640:five_prime_UTR 25.0%
! TTTCATTGGTACTTATAAGA+GGG + tig0022882:39577-39596 Msa1402640:five_prime_UTR 25.0%
! ATAGTTTATACTAAACCTGA+GGG - tig0022882:39784-39803 None:intergenic 25.0%
! AATAGTTTATACTAAACCTG+AGG - tig0022882:39785-39804 None:intergenic 25.0%
!! GAGTTTTTAATGGTTGTAAA+TGG - tig0022882:39822-39841 None:intergenic 25.0%
! TATTAATGATGATTCCATTG+AGG + tig0022882:39946-39965 Msa1402640:CDS 25.0%
! AACTCAAACAATTTAAGGAA+AGG + tig0022882:39969-39988 Msa1402640:CDS 25.0%
! AGACTTAGAATTGTGTTAAT+TGG + tig0022882:40280-40299 Msa1402640:intron 25.0%
! TTGATAAAAAGACCTACAAT+TGG - tig0022882:40674-40693 None:intergenic 25.0%
! ATGAGAAAGAACATAAATAG+TGG + tig0022882:40724-40743 Msa1402640:intron 25.0%
!! GTAATTGTCACTATGTTTTA+AGG + tig0022882:40864-40883 Msa1402640:intron 25.0%
!!! TATGTTTTAAGGACTAACTT+GGG + tig0022882:40875-40894 Msa1402640:intron 25.0%
! AACAACATATGTGACTTAAA+TGG - tig0022882:41398-41417 None:intergenic 25.0%
! GATGTTGGTGTAAATTTATA+TGG - tig0022882:41449-41468 None:intergenic 25.0%
! ATGTAACATCATTTACATAG+GGG + tig0022882:41472-41491 Msa1402640:intron 25.0%
!! CATGCTACATTTTCTTTTTT+TGG - tig0022882:41710-41729 None:intergenic 25.0%
! TAGAAACTAAGCAACTAAAA+GGG - tig0022882:42144-42163 None:intergenic 25.0%
! TTAGAAACTAAGCAACTAAA+AGG - tig0022882:42145-42164 None:intergenic 25.0%
AAAATTAAATCAAAGCCACG+TGG + tig0022882:36905-36924 Msa1402640:five_prime_UTR 30.0%
AAATTAAATCAAAGCCACGT+GGG + tig0022882:36906-36925 Msa1402640:five_prime_UTR 30.0%
ACAAGCAGTAAAAGTTTATC+GGG - tig0022882:37214-37233 None:intergenic 30.0%
GACAAGCAGTAAAAGTTTAT+CGG - tig0022882:37215-37234 None:intergenic 30.0%
CAAATTAAATAAACAGGGGA+AGG - tig0022882:37342-37361 None:intergenic 30.0%
ACAGAAAACTAAAATGCAGA+GGG - tig0022882:37437-37456 None:intergenic 30.0%
AACAGAAAACTAAAATGCAG+AGG - tig0022882:37438-37457 None:intergenic 30.0%
! TAGTTTTCTGTTTGTGAACT+TGG + tig0022882:37446-37465 Msa1402640:intron 30.0%
TATTCAAGCTGAAACAGATT+GGG + tig0022882:37588-37607 Msa1402640:five_prime_UTR 30.0%
CTTGCATGTTAGTTGAAATT+AGG - tig0022882:38196-38215 None:intergenic 30.0%
! AAGGAGTTGAAATCTTTTCA+TGG + tig0022882:38348-38367 Msa1402640:intron 30.0%
! AGGAGTTGAAATCTTTTCAT+GGG + tig0022882:38349-38368 Msa1402640:intron 30.0%
! TGACATAATAGTTTGGAACT+TGG + tig0022882:38839-38858 Msa1402640:intron 30.0%
! GACATAATAGTTTGGAACTT+GGG + tig0022882:38840-38859 Msa1402640:intron 30.0%
ATGTAAAATTGTTCTACGGA+AGG + tig0022882:38885-38904 Msa1402640:intron 30.0%
TGTAAAATTGTTCTACGGAA+GGG + tig0022882:38886-38905 Msa1402640:intron 30.0%
TTAGAAGCAGGTTAATTTAG+TGG - tig0022882:38955-38974 None:intergenic 30.0%
GGCAATCTAGTACTATAAAA+CGG - tig0022882:39049-39068 None:intergenic 30.0%
! CCGTTTAGGTTAAATTCTTA+TGG + tig0022882:39067-39086 Msa1402640:intron 30.0%
TTATGGAACGACAATAGATA+TGG + tig0022882:39084-39103 Msa1402640:intron 30.0%
ACAGGGTATGAAATATAACA+AGG + tig0022882:39170-39189 Msa1402640:intron 30.0%
! TTTCAAGAATCCTTTTATGC+TGG + tig0022882:39341-39360 Msa1402640:intron 30.0%
TGAAAACTTTCTTCTGATAC+AGG - tig0022882:39562-39581 None:intergenic 30.0%
! GGTGAATTTAGGACTAAATA+GGG + tig0022882:39712-39731 Msa1402640:five_prime_UTR 30.0%
! GTGAATTTAGGACTAAATAG+GGG + tig0022882:39713-39732 Msa1402640:five_prime_UTR 30.0%
AATTTGACATTGTTGGAGAA+TGG - tig0022882:39867-39886 None:intergenic 30.0%
! AAATTGTTTGAGTTCCTCAA+TGG - tig0022882:39963-39982 None:intergenic 30.0%
TGAGGAACTCAAACAATTTA+AGG + tig0022882:39964-39983 Msa1402640:CDS 30.0%
! ACAAGCATCACAATTTTCAA+AGG + tig0022882:40079-40098 Msa1402640:intron 30.0%
CAAACAATAGCTTCAATAAC+AGG - tig0022882:40108-40127 None:intergenic 30.0%
TTGAAGCTATTGTTTGTGAA+AGG + tig0022882:40112-40131 Msa1402640:intron 30.0%
TCACATTTAAATTGGCCATT+TGG - tig0022882:40512-40531 None:intergenic 30.0%
GTCCACAATCACATTTAAAT+TGG - tig0022882:40520-40539 None:intergenic 30.0%
TATACATGTCTTTGTGCTTA+TGG + tig0022882:40574-40593 Msa1402640:intron 30.0%
! ACTTGATTCGATAATTGACA+TGG + tig0022882:40619-40638 Msa1402640:intron 30.0%
AGGTACAAATTTCCAATTGT+AGG + tig0022882:40659-40678 Msa1402640:intron 30.0%
! TGTAGGTCTTTTTATCAAGT+AGG + tig0022882:40676-40695 Msa1402640:intron 30.0%
TAGTGGTTAATGAAATCTGA+TGG + tig0022882:40741-40760 Msa1402640:intron 30.0%
AGTGGTTAATGAAATCTGAT+GGG + tig0022882:40742-40761 Msa1402640:intron 30.0%
CATAGTGACAATTACAGAAT+TGG - tig0022882:40859-40878 None:intergenic 30.0%
!!! CTATGTTTTAAGGACTAACT+TGG + tig0022882:40874-40893 Msa1402640:intron 30.0%
! TACATTCGCATCTCAATTTT+CGG - tig0022882:41172-41191 None:intergenic 30.0%
ATGATGTTACATTTGGATGT+TGG - tig0022882:41464-41483 None:intergenic 30.0%
!! TTTTAGGAACGAATATATGG+TGG + tig0022882:41916-41935 Msa1402640:intron 30.0%
AAGGCTTTACTATTCTTCGA+AGG + tig0022882:37021-37040 Msa1402640:five_prime_UTR 35.0%
TTTGAAAACTGAACGTTCGT+GGG - tig0022882:37086-37105 None:intergenic 35.0%
ATTTGAAAACTGAACGTTCG+TGG - tig0022882:37087-37106 None:intergenic 35.0%
! ACGTTCAGTTTTCAAATTGC+TGG + tig0022882:37090-37109 Msa1402640:five_prime_UTR 35.0%
! CTGCATTATTTCTTGCTTGT+GGG + tig0022882:37293-37312 Msa1402640:intron 35.0%
! TGCATTATTTCTTGCTTGTG+GGG + tig0022882:37294-37313 Msa1402640:intron 35.0%
AATCGCTTGATTCTTTGTTC+TGG + tig0022882:37475-37494 Msa1402640:intron 35.0%
ATCGCTTGATTCTTTGTTCT+GGG + tig0022882:37476-37495 Msa1402640:intron 35.0%
! TTGATTCTTTGTTCTGGGTA+TGG + tig0022882:37481-37500 Msa1402640:intron 35.0%
TTTCAGCTTGAATAGGAGAT+GGG - tig0022882:37582-37601 None:intergenic 35.0%
CAATCTGTTTCAGCTTGAAT+AGG - tig0022882:37589-37608 None:intergenic 35.0%
CTATTCAAGCTGAAACAGAT+TGG + tig0022882:37587-37606 Msa1402640:five_prime_UTR 35.0%
TTGCAAAACTTCTTCATGAC+CGG + tig0022882:37632-37651 Msa1402640:five_prime_UTR 35.0%
ATTTACCAATCTATGTGTGC+AGG - tig0022882:38109-38128 None:intergenic 35.0%
AAGCAATAAGCAGATATGTG+TGG - tig0022882:38271-38290 None:intergenic 35.0%
TTTACATCGTTATGGACCTA+TGG + tig0022882:38483-38502 Msa1402640:intron 35.0%
AAATGTTCAAGGAGTTCACA+TGG + tig0022882:38646-38665 Msa1402640:five_prime_UTR 35.0%
ATGGTTGAAGTTGCTATCAT+TGG + tig0022882:38923-38942 Msa1402640:intron 35.0%
ATTAACCTGCTTCTAATGCT+TGG + tig0022882:38959-38978 Msa1402640:intron 35.0%
! ATAGTACTAGATTGCCGTTT+AGG + tig0022882:39053-39072 Msa1402640:intron 35.0%
TTTGGATTGCCTTTGTCATT+AGG + tig0022882:39135-39154 Msa1402640:intron 35.0%
AACCTAAGTCCTAATGACAA+AGG - tig0022882:39147-39166 None:intergenic 35.0%
! ATTAGGACTTAGGTTGTTAC+AGG + tig0022882:39152-39171 Msa1402640:intron 35.0%
! TTAGGACTTAGGTTGTTACA+GGG + tig0022882:39153-39172 Msa1402640:intron 35.0%
! GAATTTTGAACTGGCAGAAA+GGG - tig0022882:39383-39402 None:intergenic 35.0%
! TGAATTTTGAACTGGCAGAA+AGG - tig0022882:39384-39403 None:intergenic 35.0%
GCATCATTTGAAGGATTTGA+AGG - tig0022882:39446-39465 None:intergenic 35.0%
AACAACATGGCATCATTTGA+AGG - tig0022882:39455-39474 None:intergenic 35.0%
!! TTTTTATTGGTGCTTACGAG+AGG + tig0022882:39690-39709 Msa1402640:five_prime_UTR 35.0%
!! TTTTATTGGTGCTTACGAGA+GGG + tig0022882:39691-39710 Msa1402640:five_prime_UTR 35.0%
! GGGTGAATTTAGGACTAAAT+AGG + tig0022882:39711-39730 Msa1402640:five_prime_UTR 35.0%
! AACTCTGAAAATTGTAGGCT+TGG + tig0022882:39837-39856 Msa1402640:intron 35.0%
! ACTCTGAAAATTGTAGGCTT+GGG + tig0022882:39838-39857 Msa1402640:intron 35.0%
CATCATGACTGAACTTTACA+AGG + tig0022882:40430-40449 Msa1402640:intron 35.0%
GAACTTTACAAGGTCATTCA+CGG + tig0022882:40440-40459 Msa1402640:intron 35.0%
GGCCAATTTAAATGTGATTG+TGG + tig0022882:40515-40534 Msa1402640:CDS 35.0%
! TTGTGGACAAGTTTTTGAAC+AGG + tig0022882:40532-40551 Msa1402640:CDS 35.0%
TGTGCTTATGGATATCATGA+TGG + tig0022882:40586-40605 Msa1402640:intron 35.0%
! TGGTAGTTTCTTTTGTTCAC+AGG + tig0022882:40639-40658 Msa1402640:intron 35.0%
ACTCTCCAATTAATGCAACA+TGG + tig0022882:40799-40818 Msa1402640:intron 35.0%
TCCAATTAATGCAACATGGA+TGG + tig0022882:40803-40822 Msa1402640:intron 35.0%
TCCATCCATGTTGCATTAAT+TGG - tig0022882:40807-40826 None:intergenic 35.0%
!! GGAATAATCGAAGCATTTTC+TGG + tig0022882:40995-41014 Msa1402640:intron 35.0%
CGCACGGTTAAATTTATCTT+CGG - tig0022882:41259-41278 None:intergenic 35.0%
TAAATTCTCATTAGCCATGC+AGG + tig0022882:41339-41358 Msa1402640:intron 35.0%
!!! GGTACAATTTTTTTCCTGCA+TGG - tig0022882:41356-41375 None:intergenic 35.0%
GGAAAAAAATTGTACCTCCA+AGG + tig0022882:41360-41379 Msa1402640:intron 35.0%
ACATATGTGACTTAAATGGC+TGG - tig0022882:41394-41413 None:intergenic 35.0%
ATGGGTATACGTCGTAAAAT+GGG - tig0022882:41430-41449 None:intergenic 35.0%
TATGGGTATACGTCGTAAAA+TGG - tig0022882:41431-41450 None:intergenic 35.0%
CTTCTGTGACATTAATGTCA+CGG + tig0022882:41500-41519 Msa1402640:intron 35.0%
ATCTAATGTCACTCAATGTG+TGG - tig0022882:41542-41561 None:intergenic 35.0%
! CTTTGGTGACATTAATGTCA+CGG - tig0022882:41622-41641 None:intergenic 35.0%
TATGTAAATGGGTGACACTT+TGG - tig0022882:41639-41658 None:intergenic 35.0%
AGTGCGAAAATACGAAGATA+CGG + tig0022882:41980-41999 Msa1402640:CDS 35.0%
AAAACAGTAAAGCTGCAACA+GGG - tig0022882:42120-42139 None:intergenic 35.0%
TAAAACAGTAAAGCTGCAAC+AGG - tig0022882:42121-42140 None:intergenic 35.0%
TTGCAAATTGGTCGATCTAC+AGG - tig0022882:37049-37068 None:intergenic 40.0%
TGTAGATCGACCAATTTGCA+AGG + tig0022882:37048-37067 Msa1402640:five_prime_UTR 40.0%
GTAGATCGACCAATTTGCAA+GGG + tig0022882:37049-37068 Msa1402640:five_prime_UTR 40.0%
GCAGTAAAAGTTTATCGGGA+AGG - tig0022882:37210-37229 None:intergenic 40.0%
! AGAGTACCTTTGATTGTGTC+AGG + tig0022882:37235-37254 Msa1402640:five_prime_UTR 40.0%
GAGTACCTTTGATTGTGTCA+GGG + tig0022882:37236-37255 Msa1402640:five_prime_UTR 40.0%
! GCTGCATTATTTCTTGCTTG+TGG + tig0022882:37292-37311 Msa1402640:intron 40.0%
TTGTCAGTAGCAGTTATGTG+TGG + tig0022882:37359-37378 Msa1402640:intron 40.0%
GTTTCAGCTTGAATAGGAGA+TGG - tig0022882:37583-37602 None:intergenic 40.0%
! TCCTTGTTTGTGTTTGTTGC+CGG - tig0022882:37654-37673 None:intergenic 40.0%
AGGTGATGCTAATGTTGATG+AGG - tig0022882:37992-38011 None:intergenic 40.0%
TCATCAACATTAGCATCACC+TGG + tig0022882:37991-38010 Msa1402640:five_prime_UTR 40.0%
TGTATCCTGCACACATAGAT+TGG + tig0022882:38101-38120 Msa1402640:intron 40.0%
GTGAACTCCTTGAACATTTC+CGG - tig0022882:38645-38664 None:intergenic 40.0%
AAAATTGTTCTACGGAAGGG+AGG + tig0022882:38889-38908 Msa1402640:intron 40.0%
AGTGAAAGGGTTGAATCCAT+AGG - tig0022882:39009-39028 None:intergenic 40.0%
TATAAAACGGCTGAGACAGT+GGG - tig0022882:39036-39055 None:intergenic 40.0%
TGCCTTTGTCATTAGGACTT+AGG + tig0022882:39142-39161 Msa1402640:intron 40.0%
GCAGTAAAGTCCAGCATAAA+AGG - tig0022882:39354-39373 None:intergenic 40.0%
GAGAACTAAGCCTAACTAGA+GGG + tig0022882:39502-39521 Msa1402640:five_prime_UTR 40.0%
AGGGTGAATTTCACATGAAG+TGG + tig0022882:39596-39615 Msa1402640:five_prime_UTR 40.0%
GTTTATACTAAACCTGAGGG+TGG - tig0022882:39781-39800 None:intergenic 40.0%
! CTCTGAAAATTGTAGGCTTG+GGG + tig0022882:39839-39858 Msa1402640:intron 40.0%
CTCCAACAATGTCAAATTGC+AGG + tig0022882:39869-39888 Msa1402640:intron 40.0%
AGCCTGCAATTTGACATTGT+TGG - tig0022882:39874-39893 None:intergenic 40.0%
ACAATGTCAAATTGCAGGCT+TGG + tig0022882:39874-39893 Msa1402640:intron 40.0%
CAATGTCAAATTGCAGGCTT+GGG + tig0022882:39875-39894 Msa1402640:intron 40.0%
AATGTCAAATTGCAGGCTTG+GGG + tig0022882:39876-39895 Msa1402640:intron 40.0%
CATTTGACATTGTTGGAGCA+TGG - tig0022882:39904-39923 None:intergenic 40.0%
CTCCAACAATGTCAAATGCT+TGG + tig0022882:39906-39925 Msa1402640:exon 40.0%
GACCAAGCATTTGACATTGT+TGG - tig0022882:39911-39930 None:intergenic 40.0%
ACAATGTCAAATGCTTGGTC+TGG + tig0022882:39911-39930 Msa1402640:exon 40.0%
CAATGTCAAATGCTTGGTCT+GGG + tig0022882:39912-39931 Msa1402640:exon 40.0%
AGCTATTGTTTGTGAAAGGC+AGG + tig0022882:40116-40135 Msa1402640:intron 40.0%
!! TCAGAGTGTGATTTTCAAGC+AGG + tig0022882:40207-40226 Msa1402640:intron 40.0%
TTTACAAGGTCATTCACGGT+TGG + tig0022882:40444-40463 Msa1402640:intron 40.0%
!! ATTTGGAGTTTTAGCCTTCC+TGG - tig0022882:40495-40514 None:intergenic 40.0%
AGGAAGGCTAAAACTCCAAA+TGG + tig0022882:40494-40513 Msa1402640:CDS 40.0%
! TTTTTGAACAGGCAATCCCA+AGG + tig0022882:40543-40562 Msa1402640:CDS 40.0%
! TAATGCAACATGGATGGACT+TGG + tig0022882:40809-40828 Msa1402640:intron 40.0%
TGGGTATACGTCGTAAAATG+GGG - tig0022882:41429-41448 None:intergenic 40.0%
TGTCACGGTGACATTAAATC+TGG + tig0022882:41515-41534 Msa1402640:intron 40.0%
GTGACATTAGATGTGTTGTG+TGG + tig0022882:41550-41569 Msa1402640:intron 40.0%
GCAATGGCAATGACAATATG+TGG + tig0022882:41580-41599 Msa1402640:intron 40.0%
!!! AACTTTTCTGGCTCTTCACA+TGG - tig0022882:41675-41694 None:intergenic 40.0%
GCGAGACATCAACTAGAAAA+GGG - tig0022882:41746-41765 None:intergenic 40.0%
AGCGAGACATCAACTAGAAA+AGG - tig0022882:41747-41766 None:intergenic 40.0%
! AGGAACGAATATATGGTGGA+AGG + tig0022882:41920-41939 Msa1402640:intron 40.0%
!! ATATATGGTGGAAGGTGTCT+TGG + tig0022882:41928-41947 Msa1402640:CDS 40.0%
TGTCTTGGAGCAAAAGAAAG+AGG + tig0022882:41943-41962 Msa1402640:CDS 40.0%
CGAAGAAAAAGCAGCAAAAG+GGG - tig0022882:42086-42105 None:intergenic 40.0%
CCGAAGAAAAAGCAGCAAAA+GGG - tig0022882:42087-42106 None:intergenic 40.0%
!!! CCCTTTTGCTGCTTTTTCTT+CGG + tig0022882:42084-42103 Msa1402640:CDS 40.0%
!!! CCTTTTGCTGCTTTTTCTTC+GGG + tig0022882:42085-42104 Msa1402640:CDS 40.0%
TTAAATCAAAGCCACGTGGG+AGG + tig0022882:36909-36928 Msa1402640:five_prime_UTR 45.0%
GAGGGAAAACCCTTGCAAAT+TGG - tig0022882:37061-37080 None:intergenic 45.0%
CAAATCCATAGCGTCTCTTG+CGG + tig0022882:37125-37144 Msa1402640:five_prime_UTR 45.0%
AAATCCATAGCGTCTCTTGC+GGG + tig0022882:37126-37145 Msa1402640:five_prime_UTR 45.0%
!! TCCATGGAGAATTTGGTGTC+AGG + tig0022882:37149-37168 Msa1402640:five_prime_UTR 45.0%
!! CCATGGAGAATTTGGTGTCA+GGG + tig0022882:37150-37169 Msa1402640:five_prime_UTR 45.0%
AGGGTAGATCCTTACAGTCA+TGG + tig0022882:37169-37188 Msa1402640:five_prime_UTR 45.0%
GTAGATCCTTACAGTCATGG+TGG + tig0022882:37172-37191 Msa1402640:five_prime_UTR 45.0%
ACCTTTGATTGTGTCAGGGT+CGG + tig0022882:37240-37259 Msa1402640:five_prime_UTR 45.0%
CAAGCTGAAACAGATTGGGT+AGG + tig0022882:37592-37611 Msa1402640:five_prime_UTR 45.0%
ACCGGCAACAAACACAAACA+AGG + tig0022882:37650-37669 Msa1402640:five_prime_UTR 45.0%
GGCAACAAACACAAACAAGG+AGG + tig0022882:37653-37672 Msa1402640:five_prime_UTR 45.0%
!! AAAAGGAAGGGCATCAAACC+AGG - tig0022882:38012-38031 None:intergenic 45.0%
!! CAGGATACAGACTGGTCTTA+TGG - tig0022882:38090-38109 None:intergenic 45.0%
TATGTGTGCAGGATACAGAC+TGG - tig0022882:38098-38117 None:intergenic 45.0%
CTAGTCGTCTACATCACCAT+AGG - tig0022882:38502-38521 None:intergenic 45.0%
TGAACATTTCCGGTGCACTA+AGG - tig0022882:38635-38654 None:intergenic 45.0%
TAGTGCACCGGAAATGTTCA+AGG + tig0022882:38635-38654 Msa1402640:five_prime_UTR 45.0%
AAGGGAGGAAAGTGGCATAA+TGG + tig0022882:38904-38923 Msa1402640:intron 45.0%
TCTCACCAAGCATTAGAAGC+AGG - tig0022882:38967-38986 None:intergenic 45.0%
GACAGTGGGATACAGTGAAA+GGG - tig0022882:39022-39041 None:intergenic 45.0%
AGACAGTGGGATACAGTGAA+AGG - tig0022882:39023-39042 None:intergenic 45.0%
CTATAAAACGGCTGAGACAG+TGG - tig0022882:39037-39056 None:intergenic 45.0%
TTATTGCACGTCACATGCAG+TGG + tig0022882:39480-39499 Msa1402640:intron 45.0%
GGAGAACTAAGCCTAACTAG+AGG + tig0022882:39501-39520 Msa1402640:five_prime_UTR 45.0%
TTCCTCAAGTCCCTCTAGTT+AGG - tig0022882:39515-39534 None:intergenic 45.0%
GCTTACGAGAGGGTGAATTT+AGG + tig0022882:39701-39720 Msa1402640:five_prime_UTR 45.0%
GCTAAAATTAAGCCACCCTC+AGG + tig0022882:39766-39785 Msa1402640:five_prime_UTR 45.0%
AATGGCTGGTGAGAATACCT+TGG - tig0022882:41380-41399 None:intergenic 45.0%
CTAGAAAAGGGACAGAGTCT+CGG - tig0022882:41734-41753 None:intergenic 45.0%
!! GCTCTAGTTCTACTCCTACT+TGG + tig0022882:41764-41783 Msa1402640:intron 45.0%
GACTCATCATGTAGCCAAGT+AGG - tig0022882:41781-41800 None:intergenic 45.0%
TGGAGCAAAAGAAAGAGGAC+TGG + tig0022882:41948-41967 Msa1402640:CDS 45.0%
CCCGAAGAAAAAGCAGCAAA+AGG - tig0022882:42088-42107 None:intergenic 45.0%
AAGCTGCAACAGGGTAACTT+GGG - tig0022882:42111-42130 None:intergenic 45.0%
AAAGCTGCAACAGGGTAACT+TGG - tig0022882:42112-42131 None:intergenic 45.0%
! GAGGGGTGTACACAAAAGAG+TGG + tig0022882:36938-36957 Msa1402640:five_prime_UTR 50.0%
ACTGAACGTTCGTGGGTAGA+GGG - tig0022882:37079-37098 None:intergenic 50.0%
AACTGAACGTTCGTGGGTAG+AGG - tig0022882:37080-37099 None:intergenic 50.0%
TTGCGGGTCCATGGAGAATT+TGG + tig0022882:37142-37161 Msa1402640:five_prime_UTR 50.0%
CCCTGACACCAAATTCTCCA+TGG - tig0022882:37153-37172 None:intergenic 50.0%
CAAGGTCCACCATGACTGTA+AGG - tig0022882:37181-37200 None:intergenic 50.0%
CGATGGAGCAAACACACACA+AGG - tig0022882:37408-37427 None:intergenic 50.0%
AATGCAGAGGGATGAGACGA+TGG - tig0022882:37425-37444 None:intergenic 50.0%
TTCTACGGAAGGGAGGAAAG+TGG + tig0022882:38896-38915 Msa1402640:intron 50.0%
AGCCTAACTAGAGGGACTTG+AGG + tig0022882:39510-39529 Msa1402640:five_prime_UTR 50.0%
ACAGCTGCACTAAATGCACC+AGG + tig0022882:40474-40493 Msa1402640:intron 50.0%
CTGCACTAAATGCACCAGGA+AGG + tig0022882:40478-40497 Msa1402640:CDS 50.0%
GTTGTGTGGCTCAGATGCAA+TGG + tig0022882:41564-41583 Msa1402640:intron 50.0%
TTCCCACCAAGTCAGAAGCT+TGG + tig0022882:42015-42034 Msa1402640:CDS 50.0%
!! TGCCAAGCTTCTGACTTGGT+GGG - tig0022882:42020-42039 None:intergenic 50.0%
ACCAAGTCAGAAGCTTGGCA+CGG + tig0022882:42020-42039 Msa1402640:CDS 50.0%
AAAGCAGCAAAAGGGGCTTC+TGG - tig0022882:42079-42098 None:intergenic 50.0%
! CCACGTGGGAGGTGTATAGA+GGG + tig0022882:36920-36939 Msa1402640:five_prime_UTR 55.0%
! CACGTGGGAGGTGTATAGAG+GGG + tig0022882:36921-36940 Msa1402640:five_prime_UTR 55.0%
TTATCGGGAAGGAGCGAGCA+AGG - tig0022882:37199-37218 None:intergenic 55.0%
GCCGACCCTGACACAATCAA+AGG - tig0022882:37244-37263 None:intergenic 55.0%
GCAGAGCAACCTTAGTGCAC+CGG + tig0022882:38623-38642 Msa1402640:intron 55.0%
GAGAACCAAGCCTCGCTAGA+GGG + tig0022882:39618-39637 Msa1402640:five_prime_UTR 55.0%
TTTAACCGTGCGTACGCGCA+CGG + tig0022882:41267-41286 Msa1402640:intron 55.0%
GGCTGGTGAGAATACCTTGG+AGG - tig0022882:41377-41396 None:intergenic 55.0%
!! GTGCCAAGCTTCTGACTTGG+TGG - tig0022882:42021-42040 None:intergenic 55.0%
! GCCACGTGGGAGGTGTATAG+AGG + tig0022882:36919-36938 Msa1402640:five_prime_UTR 60.0%
CCCTCTATACACCTCCCACG+TGG - tig0022882:36923-36942 None:intergenic 60.0%
TGGACCCGCAAGAGACGCTA+TGG - tig0022882:37133-37152 None:intergenic 60.0%
TAGCGTCTCTTGCGGGTCCA+TGG + tig0022882:37133-37152 Msa1402640:five_prime_UTR 60.0%
GGAGAACCAAGCCTCGCTAG+AGG + tig0022882:39617-39636 Msa1402640:five_prime_UTR 60.0%
CAAGTCCCTCTAGCGAGGCT+TGG - tig0022882:39626-39645 None:intergenic 60.0%
AGCCTCGCTAGAGGGACTTG+AGG + tig0022882:39626-39645 Msa1402640:five_prime_UTR 60.0%
CTCCTCAAGTCCCTCTAGCG+AGG - tig0022882:39631-39650 None:intergenic 60.0%
TTAACCGTGCGTACGCGCAC+GGG + tig0022882:41268-41287 Msa1402640:intron 60.0%
GCCGTGCCAAGCTTCTGACT+TGG - tig0022882:42024-42043 None:intergenic 60.0%
GCCAGTGCCAACATGTGGCA+CGG + tig0022882:42042-42061 Msa1402640:CDS 60.0%
! GCAAAAGGGGCTTCTGGAGG+TGG - tig0022882:42073-42092 None:intergenic 60.0%
GCAGCAAAAGGGGCTTCTGG+AGG - tig0022882:42076-42095 None:intergenic 60.0%
GTCAGGGTCGGCGCGTTTCA+TGG + tig0022882:37252-37271 Msa1402640:five_prime_UTR 65.0%
AGGGTCGGCGCGTTTCATGG+CGG + tig0022882:37255-37274 Msa1402640:five_prime_UTR 65.0%
GCACGGCCAGTGCCAACATG+TGG + tig0022882:42037-42056 Msa1402640:CDS 65.0%
GCCGTGCCACATGTTGGCAC+TGG - tig0022882:42046-42065 None:intergenic 65.0%
! AGGGGCTTCTGGAGGTGGCA+CGG - tig0022882:42068-42087 None:intergenic 65.0%
GTGACCCGTGCGCGTACGCA+CGG - tig0022882:41275-41294 None:intergenic 70.0%
GGCACGGCCGTGCCACATGT+TGG - tig0022882:42052-42071 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
tig0022882 gene 36836 42183 36836 ID=Msa1402640;Name=Msa1402640
tig0022882 mRNA 36836 42183 36836 ID=Msa1402640-mRNA-1;Parent=Msa1402640;Name=Msa1402640-mRNA-1;_AED=0.43;_eAED=0.43;_QI=985|0.85|0.87|0.87|0.28|0.62|8|0|141
tig0022882 exon 36836 37281 36836 ID=Msa1402640-mRNA-1:exon:19031;Parent=Msa1402640-mRNA-1
tig0022882 exon 37557 37674 37557 ID=Msa1402640-mRNA-1:exon:19032;Parent=Msa1402640-mRNA-1
tig0022882 exon 37944 38012 37944 ID=Msa1402640-mRNA-1:exon:19033;Parent=Msa1402640-mRNA-1
tig0022882 exon 38627 38667 38627 ID=Msa1402640-mRNA-1:exon:19034;Parent=Msa1402640-mRNA-1
tig0022882 exon 39500 39787 39500 ID=Msa1402640-mRNA-1:exon:19035;Parent=Msa1402640-mRNA-1
tig0022882 exon 39891 39990 39891 ID=Msa1402640-mRNA-1:exon:19036;Parent=Msa1402640-mRNA-1
tig0022882 exon 40478 40564 40478 ID=Msa1402640-mRNA-1:exon:19037;Parent=Msa1402640-mRNA-1
tig0022882 exon 41922 42183 41922 ID=Msa1402640-mRNA-1:exon:19038;Parent=Msa1402640-mRNA-1
tig0022882 five_prime_UTR 36836 37281 36836 ID=Msa1402640-mRNA-1:five_prime_utr;Parent=Msa1402640-mRNA-1
tig0022882 five_prime_UTR 37557 37674 37557 ID=Msa1402640-mRNA-1:five_prime_utr;Parent=Msa1402640-mRNA-1
tig0022882 five_prime_UTR 37944 38012 37944 ID=Msa1402640-mRNA-1:five_prime_utr;Parent=Msa1402640-mRNA-1
tig0022882 five_prime_UTR 38627 38667 38627 ID=Msa1402640-mRNA-1:five_prime_utr;Parent=Msa1402640-mRNA-1
tig0022882 five_prime_UTR 39500 39787 39500 ID=Msa1402640-mRNA-1:five_prime_utr;Parent=Msa1402640-mRNA-1
tig0022882 five_prime_UTR 39891 39913 39891 ID=Msa1402640-mRNA-1:five_prime_utr;Parent=Msa1402640-mRNA-1
tig0022882 CDS 39914 39990 39914 ID=Msa1402640-mRNA-1:cds;Parent=Msa1402640-mRNA-1
tig0022882 CDS 40478 40564 40478 ID=Msa1402640-mRNA-1:cds;Parent=Msa1402640-mRNA-1
tig0022882 CDS 41922 42183 41922 ID=Msa1402640-mRNA-1:cds;Parent=Msa1402640-mRNA-1
Gene Sequence

>Msa1402640

ATGTCAAATGCTTGGTCTGGGTCTAAACTGTTTATTAATGATGATTCCATTGAGGAACTCAAACAATTTAAGGAAAGCTGCACTAAATGCACCAGGAAGGCTAAAACTCCAAATGGCCAATTTAAATGTGATTGTGGACAAGTTTTTGAACAGGCAATCCCAAGGAACGAATATATGGTGGAAGGTGTCTTGGAGCAAAAGAAAGAGGACTGGAGCAAATACAGTGCGAAAATACGAAGATACGGAACAAAAATATGTTCCCACCAAGTCAGAAGCTTGGCACGGCCAGTGCCAACATGTGGCACGGCCGTGCCACCTCCAGAAGCCCCTTTTGCTGCTTTTTCTTCGGGCCCAAGTTACCCTGTTGCAGCTTTACTGTTTTACCCTTTTAGTTGCTTAGTTTCTAAGTCGATTGTAAAGCTATAA
Protein sequence

>Msa1402640

MSNAWSGSKLFINDDSIEELKQFKESCTKCTRKAKTPNGQFKCDCGQVFEQAIPRNEYMVEGVLEQKKEDWSKYSAKIRRYGTKICSHQVRSLARPVPTCGTAVPPPEAPFAAFSSGPSYPVAALLFYPFSCLVSKSIVKL*