AlfalfaGEDB | Msa1402650

M. sativa cultivar zhongmu-4 / Msa1402650

KEGG: -
GO: GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006139 GO:0006351 GO:0006354 GO:0006366 GO:0006368 GO:0006725 GO:0006807 GO:0008023 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0016070 GO:0018130 GO:0019438 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0070013 GO:0070449 GO:0071704 GO:0090304 GO:0097659 GO:1901360 GO:1901362 GO:1901576
PFAM: PF08711.14

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1402650	XP_003602530.1	98.039	357	7	0	1	357	1	357	0.0	723

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1402650	sp\|F4KFC7\|MD26C_ARATH	53.804	368	144	10	1	357	1	353	9.69e-116	342

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1402650	G7JAV9	98.039	357	7	0	1	357	1	357	0.0	723

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TFs/TRs:

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Gene ID	Type	Classification
Msa1402650	TR	IWS1

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0473630	Msa1402650	0.960885	4.580818e-119	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1402650	MtrunA17_Chr3g0129551	98.039	357	7	0	1	357	1	357	0.0	723
Msa1402650	MtrunA17_Chr7g0255811	31.163	215	119	5	3	200	6	208	1.87e-23	100
Msa1402650	MtrunA17_Chr6g0466661	52.000	75	34	2	52	126	7	79	4.14e-13	64.3

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1402650	AT5G09850.1	53.804	368	144	10	1	357	1	353	9.85e-117	342
Msa1402650	AT5G09850.4	53.804	368	144	10	1	357	1	353	9.85e-117	342
Msa1402650	AT5G09850.2	53.804	368	144	10	1	357	1	353	9.85e-117	342
Msa1402650	AT5G09850.5	53.804	368	144	10	1	357	1	353	9.85e-117	342
Msa1402650	AT5G09850.3	51.632	337	140	8	1	326	1	325	2.02e-99	298
Msa1402650	AT5G05140.1	25.485	412	221	13	3	334	7	412	2.88e-21	94.7
Msa1402650	AT3G10820.1	29.500	200	117	6	1	199	8	184	3.82e-15	76.6
Msa1402650	AT3G10820.2	28.000	200	120	4	1	199	8	184	9.92e-15	75.9

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Find 143 sgRNAs with CRISPR-Local

Find 221 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACAACTTGTGTTTGTGGG+TGG	0.656542	tig0022882:+51366	Msa1402650:five_prime_UTR
AAACAAGATAGGGATGGAAT+GGG	0.497036	tig0022882:+54108	Msa1402650:three_prime_UTR
AAACGAAGACGGTGAAGATG+AGG	0.609578	tig0022882:+52261	Msa1402650:CDS
AAAGGTGGTGGCAGTTCTCA+AGG	0.538937	tig0022882:+53801	Msa1402650:CDS
AACAAGATAGGGATGGAATG+GGG	0.589536	tig0022882:+54109	Msa1402650:three_prime_UTR
AACTACAAAGAGGCCGATAA+TGG	0.421647	tig0022882:+53607	Msa1402650:CDS
AAGACCCACCTCCAAAACCA+AGG	0.647167	tig0022882:+53354	Msa1402650:CDS
AAGAGGGAAAAGCACTCTCA+TGG	0.508075	tig0022882:+52881	Msa1402650:CDS
AATCAATCACCTTCAACTCT+TGG	0.433018	tig0022882:-52532	None:intergenic
AATCGACGAACATTGCTTGA+TGG	0.437135	tig0022882:-52702	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TAAGAATTGTAGATCTGAGA+AGG	-	tig0022882:51636-51655	None:intergenic	30.0%
GATTGAAGAAATCAAAGAGA+TGG	-	tig0022882:51874-51893	None:intergenic	30.0%
TTTCCGATCTATATTACACA+CGG	+	tig0022882:51967-51986	Msa1402650:CDS	30.0%
TATTACATTCCAAGAGTTGA+AGG	+	tig0022882:52523-52542	Msa1402650:CDS	30.0%
ATTCGTGTGAAATTCGTTAA+TGG	+	tig0022882:52971-52990	Msa1402650:intron	30.0%
CAACAAGGTTAAAGGAATAT+TGG	-	tig0022882:53213-53232	None:intergenic	30.0%
ATCAACCAAATGCAAACAAA+AGG	-	tig0022882:53239-53258	None:intergenic	30.0%
CTTCACAAAATTAACACTAG+GGG	-	tig0022882:53482-53501	None:intergenic	30.0%
CACTTCACAAAATTAACACT+AGG	-	tig0022882:53484-53503	None:intergenic	30.0%
TAAACAACACACGAAACTTT+AGG	-	tig0022882:53695-53714	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
tig0022882	gene	51295	54506	51295	ID=Msa1402650;Name=Msa1402650
tig0022882	mRNA	51295	54506	51295	ID=Msa1402650-mRNA-1;Parent=Msa1402650;Name=Msa1402650-mRNA-1;_AED=0.06;_eAED=0.06;_QI=658\|1\|1\|1\|1\|1\|9\|667\|357
tig0022882	exon	51295	52366	51295	ID=Msa1402650-mRNA-1:exon:19005;Parent=Msa1402650-mRNA-1
tig0022882	exon	52476	52544	52476	ID=Msa1402650-mRNA-1:exon:19006;Parent=Msa1402650-mRNA-1
tig0022882	exon	52660	52742	52660	ID=Msa1402650-mRNA-1:exon:19007;Parent=Msa1402650-mRNA-1
tig0022882	exon	52836	52903	52836	ID=Msa1402650-mRNA-1:exon:19008;Parent=Msa1402650-mRNA-1
tig0022882	exon	53020	53072	53020	ID=Msa1402650-mRNA-1:exon:19009;Parent=Msa1402650-mRNA-1
tig0022882	exon	53157	53190	53157	ID=Msa1402650-mRNA-1:exon:19010;Parent=Msa1402650-mRNA-1
tig0022882	exon	53282	53418	53282	ID=Msa1402650-mRNA-1:exon:19011;Parent=Msa1402650-mRNA-1
tig0022882	exon	53535	53628	53535	ID=Msa1402650-mRNA-1:exon:19012;Parent=Msa1402650-mRNA-1
tig0022882	exon	53718	54506	53718	ID=Msa1402650-mRNA-1:exon:19013;Parent=Msa1402650-mRNA-1
tig0022882	five_prime_UTR	51295	51952	51295	ID=Msa1402650-mRNA-1:five_prime_utr;Parent=Msa1402650-mRNA-1
tig0022882	CDS	51953	52366	51953	ID=Msa1402650-mRNA-1:cds;Parent=Msa1402650-mRNA-1
tig0022882	CDS	52476	52544	52476	ID=Msa1402650-mRNA-1:cds;Parent=Msa1402650-mRNA-1
tig0022882	CDS	52660	52742	52660	ID=Msa1402650-mRNA-1:cds;Parent=Msa1402650-mRNA-1
tig0022882	CDS	52836	52903	52836	ID=Msa1402650-mRNA-1:cds;Parent=Msa1402650-mRNA-1
tig0022882	CDS	53020	53072	53020	ID=Msa1402650-mRNA-1:cds;Parent=Msa1402650-mRNA-1
tig0022882	CDS	53157	53190	53157	ID=Msa1402650-mRNA-1:cds;Parent=Msa1402650-mRNA-1
tig0022882	CDS	53282	53418	53282	ID=Msa1402650-mRNA-1:cds;Parent=Msa1402650-mRNA-1
tig0022882	CDS	53535	53628	53535	ID=Msa1402650-mRNA-1:cds;Parent=Msa1402650-mRNA-1
tig0022882	CDS	53718	53839	53718	ID=Msa1402650-mRNA-1:cds;Parent=Msa1402650-mRNA-1
tig0022882	three_prime_UTR	53840	54506	53840	ID=Msa1402650-mRNA-1:three_prime_utr;Parent=Msa1402650-mRNA-1

Gene Sequence

>Msa1402650

ATGGATTTGGACGATTTCCGATCTATATTACACACGGCGGGCGTTGACGTCTGGATGTTCATCGACACCGCGATCTCCGTCGCTGCGCAGGATAACGCCGGTGAGCTAAAGAGGAGAAGAGACGGAATCGTGGAGCGTCTCTACGCTGCCACCACGGAGGTTACTCCGATTTGCCAGAATTGCGACGGAGGTCAACGTCTTGTGACAAACGATAACCAAATCAAGAAAGAGAACAGTCCTAGTCTGAGTCCGGAACGACAACCGCGCCGCGGCGGAGCTTCTTCTCCTCCGACGCCGCAGTCTGAAGGAAACGAAGACGGTGAAGATGAGGAGATAGATCCTTACGGTGGTTTGTTTGATGATGAACAGAAGAAGATTCTAGAGATTAAAGAGCTTCTAGAAGATCCTCAACAGTCTGAAGATACTTTGATGGAGTTGCTACAAAATCTGGTGGATATTGATATTACATTCCAAGAGTTGAAGGAAACTGACATAGGGAGGAACGTGAATCAGTTGCGAAAACATCCATCAAGCAATGTTCGTCGATTGGTGAAGCTACTTGTCAAGAAGTGGAAAGAAATTGTTGATGATTGGGTGAAGCAGAATCCACAAAGAGGGAAAAGCACTCTCATGGCTGATGGAGACTCTCCTTTGCAGAAAACCACCCCAAATGGGCATAATCATCAGATTCCTGATTTTGCGTACTCTCCAAATCCACACAATGGGAGCTCTGGTTCCGACCGTAACACCTCCGAAGCTGAACCAAAACCAAAACCTAAATCAGTTCCTCGCAAAGACCCACCTCCAAAACCAAGGCCATCCCCCCCAGTTACTGCCCCTACCTCTGCTCCTCAGAATAGACAGAGAGAACAGAAAGAGAGCAATTTTGATGCAGAGAGGCTTGCTGCTGCAAGAAAACGGCTTCAAGCGAACTACAAAGAGGCCGATAATGCAAAAAAGCAAAGAACAATTCAGGTGATGGACATACATGAGTTACCTAAGTCAAAAGCAAAGAATGGTTACTTTGCAAAGCACAAAGGTGGTGGCAGTTCTCAAGGAAGGCAGCACTGGTGA

Protein sequence

>Msa1402650

MDLDDFRSILHTAGVDVWMFIDTAISVAAQDNAGELKRRRDGIVERLYAATTEVTPICQNCDGGQRLVTNDNQIKKENSPSLSPERQPRRGGASSPPTPQSEGNEDGEDEEIDPYGGLFDDEQKKILEIKELLEDPQQSEDTLMELLQNLVDIDITFQELKETDIGRNVNQLRKHPSSNVRRLVKLLVKKWKEIVDDWVKQNPQRGKSTLMADGDSPLQKTTPNGHNHQIPDFAYSPNPHNGSSGSDRNTSEAEPKPKPKSVPRKDPPPKPRPSPPVTAPTSAPQNRQREQKESNFDAERLAAARKRLQANYKEADNAKKQRTIQVMDIHELPKSKAKNGYFAKHKGGGSSQGRQHW*