AlfalfaGEDB | Msa1402710

M. sativa cultivar zhongmu-4 / Msa1402710

KEGG: K08866
GO: GO:0000228 GO:0000775 GO:0000776 GO:0000777 GO:0000778 GO:0000779 GO:0000780 GO:0000793 GO:0000794 GO:0003674 GO:0003824 GO:0004672 GO:0004712 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005813 GO:0005815 GO:0005856 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0015630 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0031974 GO:0031981 GO:0032991 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044430 GO:0044446 GO:0044454 GO:0044464 GO:0070013 GO:0071704 GO:0098687 GO:0140096 GO:1901564
PFAM: PF00069.28

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1402710	XP_003601096.1	94.062	741	42	2	1	740	1	740	0.0	1417

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1402710	sp\|Q84VX4\|MPS1_ARATH	53.003	766	278	14	18	735	39	770	0.0	741

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1402710	G7J3L3	94.062	741	42	2	1	740	1	740	0.0	1417

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0417510	Msa1402710	0.964495	2.126503e-123	-8.615850e-47
Msa0509880	Msa1402710	0.995361	1.640621e-215	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1402710	MtrunA17_Chr3g0115051	94.062	741	42	2	1	740	1	740	0.0	1417
Msa1402710	MtrunA17_Chr5g0424251	63.130	754	216	11	1	739	1	707	0.0	901
Msa1402710	MtrunA17_Chr4g0000481	28.333	300	165	10	365	658	85	340	9.70e-23	100
Msa1402710	MtrunA17_Chr3g0115171	29.524	315	145	14	378	677	297	549	1.07e-22	102
Msa1402710	MtrunA17_Chr8g0386981	31.142	289	149	11	390	672	435	679	1.63e-21	100
Msa1402710	MtrunA17_Chr1g0202831	28.803	309	161	12	360	657	407	667	4.25e-21	99.0
Msa1402710	MtrunA17_Chr8g0384301	31.225	253	125	9	409	657	348	555	7.14e-21	97.8
Msa1402710	MtrunA17_Chr5g0424651	27.181	298	169	11	364	657	321	574	9.65e-21	97.1
Msa1402710	MtrunA17_Chr5g0424581	27.181	298	169	11	364	657	125	378	1.11e-20	95.1
Msa1402710	MtrunA17_Chr5g0424501	27.852	298	167	12	364	657	192	445	2.51e-20	94.7

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1402710	AT1G77720.1	53.003	766	278	14	18	735	39	770	0.0	741
Msa1402710	AT4G08470.1	29.333	300	149	12	370	657	309	557	4.26e-23	104
Msa1402710	AT4G08470.3	29.000	300	150	12	370	657	227	475	3.02e-22	101
Msa1402710	AT3G21220.2	29.097	299	162	13	365	657	71	325	6.39e-22	98.6
Msa1402710	AT3G21220.1	29.097	299	162	13	365	657	71	325	6.39e-22	98.6
Msa1402710	AT4G29810.1	30.986	213	119	9	454	657	137	330	2.91e-21	96.7
Msa1402710	AT1G51660.1	30.201	298	158	15	366	657	81	334	3.29e-21	96.7
Msa1402710	AT4G29810.2	30.986	213	119	9	454	657	146	339	3.72e-21	96.7
Msa1402710	AT1G63700.1	29.412	323	150	16	361	663	397	661	5.54e-21	99.0
Msa1402710	AT1G63700.2	29.412	323	150	16	361	663	397	661	5.54e-21	99.0

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Find 189 sgRNAs with CRISPR-Local

Find 297 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGCAACCCAAAATTCAGC+AGG	0.492014	tig0022891:+28008	Msa1402710:CDS
AAAGGATGTTGGAGTAACTG+AGG	0.603950	tig0022891:-30869	None:intergenic
AAATGTCTTGTATTCTGAAA+AGG	0.380934	tig0022891:-30720	None:intergenic
AAATTGAAATTGAAATGCGG+TGG	0.644087	tig0022891:+27196	Msa1402710:five_prime_UTR
AAATTTACAGCTACTGTCTT+GGG	0.423909	tig0022891:-30927	None:intergenic
AACATTTGCATCTTGAGAAG+GGG	0.575571	tig0022891:-27525	None:intergenic
AACCACTATCTAGATGCAAA+CGG	0.505881	tig0022891:-28233	None:intergenic
AACCGAGCGGAAGCTTCGAT+TGG	0.511352	tig0022891:+27970	Msa1402710:CDS
AAGAATCAGACTTGATCGGA+AGG	0.605161	tig0022891:-27246	None:intergenic
AAGAGATCGAATATCTAAAT+AGG	0.303126	tig0022891:+28850	Msa1402710:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAATTGAAATTGAAATGCGG+TGG	+	tig0022891:27196-27215	Msa1402710:five_prime_UTR	30.0%
TCTTCTTATATGAGTTCACT+TGG	+	tig0022891:27919-27938	Msa1402710:CDS	30.0%
ACAGAAATGGAGTATATAGA+AGG	+	tig0022891:27946-27965	Msa1402710:CDS	30.0%
ACTTAAGAAGATCAAACTCA+GGG	+	tig0022891:28794-28813	Msa1402710:CDS	30.0%
TTGCTTGAAGAAGTTATGAA+AGG	+	tig0022891:29203-29222	Msa1402710:CDS	30.0%
AGAACACATAAAATTAGACG+TGG	-	tig0022891:29539-29558	None:intergenic	30.0%
ATATTAACAAGTGAGTCAGA+AGG	-	tig0022891:29986-30005	None:intergenic	30.0%
GGAAACAAAAATATCCAATG+TGG	-	tig0022891:30010-30029	None:intergenic	30.0%
CTTGACCTATATAATTGTTC+AGG	-	tig0022891:30347-30366	None:intergenic	30.0%
GATAGATAGTTCCTGTAAAT+TGG	-	tig0022891:30506-30525	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
tig0022891	gene	27190	31368	27190	ID=Msa1402710;Name=Msa1402710
tig0022891	mRNA	27190	31368	27190	ID=Msa1402710-mRNA-1;Parent=Msa1402710;Name=Msa1402710-mRNA-1;_AED=0.07;_eAED=0.07;_QI=39\|1\|1\|1\|1\|1\|6\|218\|741
tig0022891	exon	27190	27331	27190	ID=Msa1402710-mRNA-1:exon:19063;Parent=Msa1402710-mRNA-1
tig0022891	exon	27414	27566	27414	ID=Msa1402710-mRNA-1:exon:19064;Parent=Msa1402710-mRNA-1
tig0022891	exon	27881	28914	27881	ID=Msa1402710-mRNA-1:exon:19065;Parent=Msa1402710-mRNA-1
tig0022891	exon	29188	29388	29188	ID=Msa1402710-mRNA-1:exon:19066;Parent=Msa1402710-mRNA-1
tig0022891	exon	29794	29955	29794	ID=Msa1402710-mRNA-1:exon:19067;Parent=Msa1402710-mRNA-1
tig0022891	exon	30578	31368	30578	ID=Msa1402710-mRNA-1:exon:19068;Parent=Msa1402710-mRNA-1
tig0022891	five_prime_UTR	27190	27228	27190	ID=Msa1402710-mRNA-1:five_prime_utr;Parent=Msa1402710-mRNA-1
tig0022891	CDS	27229	27331	27229	ID=Msa1402710-mRNA-1:cds;Parent=Msa1402710-mRNA-1
tig0022891	CDS	27414	27566	27414	ID=Msa1402710-mRNA-1:cds;Parent=Msa1402710-mRNA-1
tig0022891	CDS	27881	28914	27881	ID=Msa1402710-mRNA-1:cds;Parent=Msa1402710-mRNA-1
tig0022891	CDS	29188	29388	29188	ID=Msa1402710-mRNA-1:cds;Parent=Msa1402710-mRNA-1
tig0022891	CDS	29794	29955	29794	ID=Msa1402710-mRNA-1:cds;Parent=Msa1402710-mRNA-1
tig0022891	CDS	30578	31150	30578	ID=Msa1402710-mRNA-1:cds;Parent=Msa1402710-mRNA-1
tig0022891	three_prime_UTR	31151	31368	31151	ID=Msa1402710-mRNA-1:three_prime_utr;Parent=Msa1402710-mRNA-1

Gene Sequence

>Msa1402710

ATGGATGGGAAGTCTAACCTTCCGATCAAGTCTGATTCTTCTTCTTCCCCACCGGACTTCCTCCGCCACGTTCAAGCCGCCTTGAAGCGTCACCGTCCTCTCGGTACAGGGCAATCCAATATCATTAGGCCAAGACGCACGATTCTTCGTCAACCAACGCATGATTCAATCTCGAACACAAACAATGATTCACTTGAAACCAGCACTGTTATTGCCCCTTCTCAAGATGCAAATGTTCACAATAAAGTTCCACAGGGGGCCAATGATGAAAAGGCCATTGAGTTGGAGAATTTGTCTTCTTATATGAGTTCACTTGGATTCACAGAAATGGAGTATATAGAAGGCAACCGAGCGGAAGCTTCGATTGGATTACAGGATGATTTAAAGCAACCCAAAATTCAGCAGGTTGAGCCTGATTTCAGTTTGAGATCAGACGGGGGAATGAGTTGCTCTATGTTGCCGAGGAGAGCTACGGTTACACGGGATAATTTGCAGCAGTTTAGAAACTTTCTAAGTCAACCAGCGACACAGTCTTCGGTTGTGGGACCTTCGTGTGCCACAACTACATCGGTTCATTCCACTTCAGCTCCCATGATGAATTCAACAACCCGTTTGCATCTAGATAGTGGTTTGCGCGTGGTTGCTGAACCTTTAGGAGAGATTGGTGTTTATCCTATAGCTGAAAGAGTGATGGAATCAGAAAATACAGATAATTCTGGTGAAAAAGACAATAAAATGTCAGTTGATAAGGCTGCAATTGTTGTGCAAGCTTCTGATTCTTGCGTCGGTGCCGAGTTGGCATCTAAAGAGAGTGATCAATCAAGTAAGCACCAAGAATGCATATTAAAAGAATCCGGAAATTCGAAACATGCTTCTTCTGATGGTGACAAGTTAACCGAAGGGAAAGAGCCTGCAGATGTTGCTCACGTACAGCGTCAGGCTCCAGTGCCCAAAACATCATCTTTGGATGTGAAATTTGAATATTCAAAGTTAGAAAAACCAGATAAGGCCGTGAGTAGTAAAGGCTCGTCGGTCGCTAAGAAAAGGTCCTATGATCCTGATTTATTTTTCAAGGTTAATGGCAAGCTTTATCAACGTCTTGGCAAGATAGGCAGTGGTGGAAGCAGTGAGGTGCACAAGGTGATTTCATCAGATTGTAGAATATATGCACTTAAGAAGATCAAACTCAGGGGTCGTGATTATGCTACTGCTTTTGGGTTTTGTCAAGAGATCGAATATCTAAATAGGCTGAGAGGAAACGATAATATTATACAGCTTATAGATTATGAGGTGACTGACAAGGCTTTGCTTGAAGAAGTTATGAAAGGCTCTCTTAGTAATAAGGATGGCCGAGTCAGGGATGATGGATATATATACATGGTACTTGAATACGGTGAAATTGATTTAGCTCACATGTTGTCCCAGAAGTGGAAGGAGCTGGATGGATCAAACCAGACCATAGATGAGAACTGGCTTCGATTTTATTGGCAGCAAATTCTTCAAGCTGTCAATACTATTCACGAGGAACGAATTGTGCACTCTGACTTGAAGCCTGCCAACTTCCTCCTAGTCAAGGGTTCCCTAAAACTGATTGATTTTGGTATTGCCAAAGCAATAATGAGCGATACTACCAATATCCAACGGGAATCACAGGTCGGTACTCTGAGTTACATGTCTCCAGAAGCATTTATGTGTAATGAGACTGATGCAAATGGAAACATCATCAAGTGTGGTCGGCCATCAGATATCTGGTCTTTGGGATGCATCCTTTATCAAATGGTATATGGGAGAACCCCCTTTTCAGAATACAAGACATTTTGGGCCAAATTTAAAGTTATAACAGATCCAAATCATGAAATTAAGTATGAACCACTTTCAAATCCATGGCTGGTAGATCTTATGAAGAGGTGTCTAGCATGGGATCGCAATCAAAGGTGGAGAATTCCTCAGTTACTCCAACATCCTTTTCTTGCACCTCATGTACTGCCTCATCCAACTTTGTCCCAAGACAGTAGCTGTAAATTTGTACATCTTATTGCTGAAACTTGTACACGTGACCCTGAAGCTTCCCAACTTTGTCAGCAGCTCCAGAGTCTTCTTGTTAATCCACTCGAGTTAACGACTCACTCACTAAACTCACGAGATCAACAAAGAAAATTGTTGTCCCAAATGTCTGAACTCTGCATCCAGCTGCGGGAACGTTTGATAGATACTGATATCACGTAA

Protein sequence

>Msa1402710

MDGKSNLPIKSDSSSSPPDFLRHVQAALKRHRPLGTGQSNIIRPRRTILRQPTHDSISNTNNDSLETSTVIAPSQDANVHNKVPQGANDEKAIELENLSSYMSSLGFTEMEYIEGNRAEASIGLQDDLKQPKIQQVEPDFSLRSDGGMSCSMLPRRATVTRDNLQQFRNFLSQPATQSSVVGPSCATTTSVHSTSAPMMNSTTRLHLDSGLRVVAEPLGEIGVYPIAERVMESENTDNSGEKDNKMSVDKAAIVVQASDSCVGAELASKESDQSSKHQECILKESGNSKHASSDGDKLTEGKEPADVAHVQRQAPVPKTSSLDVKFEYSKLEKPDKAVSSKGSSVAKKRSYDPDLFFKVNGKLYQRLGKIGSGGSSEVHKVISSDCRIYALKKIKLRGRDYATAFGFCQEIEYLNRLRGNDNIIQLIDYEVTDKALLEEVMKGSLSNKDGRVRDDGYIYMVLEYGEIDLAHMLSQKWKELDGSNQTIDENWLRFYWQQILQAVNTIHEERIVHSDLKPANFLLVKGSLKLIDFGIAKAIMSDTTNIQRESQVGTLSYMSPEAFMCNETDANGNIIKCGRPSDIWSLGCILYQMVYGRTPFSEYKTFWAKFKVITDPNHEIKYEPLSNPWLVDLMKRCLAWDRNQRWRIPQLLQHPFLAPHVLPHPTLSQDSSCKFVHLIAETCTRDPEASQLCQQLQSLLVNPLELTTHSLNSRDQQRKLLSQMSELCIQLRERLIDTDIT*