Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
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Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
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Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1410610 | A0A396HKG4 | 70.238 | 252 | 43 | 3 | 10 | 231 | 4 | 253 | 1.58e-114 | 338 |
Gene ID | Type | Classification |
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Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa1410610 | Msa1410630 | 0.821361 | 4.205210e-53 | -8.615850e-47 |
Msa1000060 | Msa1410610 | 0.832214 | 1.073952e-55 | -8.615850e-47 |
Msa0926980 | Msa1410610 | 0.966539 | 4.685680e-126 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1410610 | MtrunA17_Chr6g0486171 | 70.238 | 252 | 43 | 3 | 10 | 231 | 4 | 253 | 3.05e-118 | 338 |
Msa1410610 | MtrunA17_Chr6g0486151 | 32.000 | 175 | 82 | 5 | 101 | 239 | 124 | 297 | 5.80e-16 | 75.5 |
Msa1410610 | MtrunA17_Chr6g0486131 | 50.633 | 79 | 29 | 2 | 70 | 140 | 1 | 77 | 5.17e-15 | 72.0 |
Msa1410610 | MtrunA17_Chr6g0486181 | 30.045 | 223 | 115 | 7 | 1 | 185 | 1 | 220 | 8.79e-14 | 69.3 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Find 42 sgRNAs with CRISPR-Local
Find 114 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GCCAATCAAGGTGTGATTAT+AGG | 0.272186 | tig0023681:-33128 | Msa1410610:CDS |
TAGAGTGTTAAACAATGATT+TGG | 0.292646 | tig0023681:-33348 | Msa1410610:CDS |
TCCTTATGAACACCCTTCTT+TGG | 0.298019 | tig0023681:-33309 | Msa1410610:CDS |
TCCTATAATCACACCTTGAT+TGG | 0.339634 | tig0023681:+33127 | None:intergenic |
TTAAAATTTGTTTCATAAAG+TGG | 0.347789 | tig0023681:+33586 | None:intergenic |
TCACGAAGATGGTCTCATTA+AGG | 0.371609 | tig0023681:-33716 | Msa1410610:CDS |
TGAGAATAATGGTGAAGAAA+TGG | 0.383194 | tig0023681:-33186 | Msa1410610:CDS |
AAGTATCGAGAACATGGATT+TGG | 0.409114 | tig0023681:-33265 | Msa1410610:CDS |
TGATTTGGATGTTTCAATGA+AGG | 0.418905 | tig0023681:-33333 | Msa1410610:CDS |
ACCAAAGAAGGGTGTTCATA+AGG | 0.427204 | tig0023681:+33308 | None:intergenic |
TTGTGCTGCTCAAACTCATA+TGG | 0.442909 | tig0023681:-33222 | Msa1410610:CDS |
ATTTGAAGCAATACCAAAGA+AGG | 0.460237 | tig0023681:+33296 | None:intergenic |
TAATGAGACTAAGAACCATT+GGG | 0.460274 | tig0023681:-33563 | Msa1410610:CDS |
CAATTTGAGACTGAGAATAA+TGG | 0.473417 | tig0023681:-33197 | Msa1410610:CDS |
GTGATTATAGGAAATAATAA+TGG | 0.477144 | tig0023681:-33116 | Msa1410610:CDS |
TATAACGAAGAATGTAAATA+CGG | 0.485507 | tig0023681:+33660 | None:intergenic |
ACACTACGTAGATGGTAAAT+CGG | 0.499784 | tig0023681:-33767 | Msa1410610:CDS |
ACAGTGTCACACTACGTAGA+TGG | 0.500726 | tig0023681:-33775 | Msa1410610:CDS |
ATAATGAGACTAAGAACCAT+TGG | 0.500792 | tig0023681:-33564 | Msa1410610:CDS |
GTTCCCACGCTCTTCTCCGA+TGG | 0.501338 | tig0023681:+33850 | None:intergenic |
GAACTGTCTAGGCAAACAAA+TGG | 0.501490 | tig0023681:-33164 | Msa1410610:CDS |
AAGAAACTTTCTGTTAGAAG+AGG | 0.522872 | tig0023681:-33080 | Msa1410610:CDS |
CGAGAACATGGATTTGGAAG+TGG | 0.525089 | tig0023681:-33259 | Msa1410610:CDS |
GTTTCATAAAGTGGATCGAT+GGG | 0.528809 | tig0023681:+33595 | None:intergenic |
TTGATAATATATCACGAAGA+TGG | 0.534894 | tig0023681:-33727 | Msa1410610:CDS |
GTGAAGAAATGGAACTGTCT+AGG | 0.541494 | tig0023681:-33175 | Msa1410610:CDS |
CGCAGTTTCAGTAGAGGGGA+AGG | 0.543862 | tig0023681:-33803 | Msa1410610:CDS |
GTGCAGCAGAAGAGAAAGAA+GGG | 0.548287 | tig0023681:-33478 | Msa1410610:CDS |
TTCAACAAGTATCGAGAACA+TGG | 0.554270 | tig0023681:-33271 | Msa1410610:CDS |
TGTTTCATAAAGTGGATCGA+TGG | 0.554991 | tig0023681:+33594 | None:intergenic |
TGTGCAGCAGAAGAGAAAGA+AGG | 0.574995 | tig0023681:-33479 | Msa1410610:CDS |
GAACACGCAGTTTCAGTAGA+GGG | 0.589661 | tig0023681:-33808 | Msa1410610:CDS |
AAAACGTATGTTGCATACCA+TGG | 0.598167 | tig0023681:-33529 | Msa1410610:CDS |
AACACGCAGTTTCAGTAGAG+GGG | 0.607913 | tig0023681:-33807 | Msa1410610:CDS |
AATGTAAATACGGATCCAGT+AGG | 0.609266 | tig0023681:+33670 | None:intergenic |
TTTCCATCGGAGAAGAGCGT+GGG | 0.612805 | tig0023681:-33853 | Msa1410610:CDS |
AGACTAAGAACCATTGGGGA+GGG | 0.620733 | tig0023681:-33558 | Msa1410610:CDS |
TTTGAAGCAATACCAAAGAA+GGG | 0.625309 | tig0023681:+33297 | None:intergenic |
TGAACACGCAGTTTCAGTAG+AGG | 0.635989 | tig0023681:-33809 | Msa1410610:CDS |
GAGACTAAGAACCATTGGGG+AGG | 0.649630 | tig0023681:-33559 | Msa1410610:CDS |
AACATGGATTTGGAAGTGGA+CGG | 0.673745 | tig0023681:-33255 | Msa1410610:CDS |
AATGAGACTAAGAACCATTG+GGG | 0.684064 | tig0023681:-33562 | Msa1410610:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TTAAAATTTGTTTCATAAAG+TGG | + | tig0023681:33355-33374 | None:intergenic | 15.0% |
!!! | TTAAAATTTGTTTCATAAAG+TGG | + | tig0023681:33355-33374 | None:intergenic | 15.0% |
!! | TATAACGAAGAATGTAAATA+CGG | + | tig0023681:33281-33300 | None:intergenic | 20.0% |
!! | GTGATTATAGGAAATAATAA+TGG | - | tig0023681:33822-33841 | Msa1410610:CDS | 20.0% |
!! | TATAACGAAGAATGTAAATA+CGG | + | tig0023681:33281-33300 | None:intergenic | 20.0% |
!! | GTGATTATAGGAAATAATAA+TGG | - | tig0023681:33822-33841 | Msa1410610:CDS | 20.0% |
!! | TTGATAATATATCACGAAGA+TGG | - | tig0023681:33211-33230 | Msa1410610:CDS | 25.0% |
!! | GACTTAAATTTCGTTTTCTA+CGG | - | tig0023681:33244-33263 | Msa1410610:CDS | 25.0% |
!!! | GTAAACAATGCTTTTTAAGT+CGG | - | tig0023681:33530-33549 | Msa1410610:CDS | 25.0% |
!! | TAGAGTGTTAAACAATGATT+TGG | - | tig0023681:33590-33609 | Msa1410610:CDS | 25.0% |
!! | TTGATAATATATCACGAAGA+TGG | - | tig0023681:33211-33230 | Msa1410610:CDS | 25.0% |
!! | GACTTAAATTTCGTTTTCTA+CGG | - | tig0023681:33244-33263 | Msa1410610:CDS | 25.0% |
!!! | GTAAACAATGCTTTTTAAGT+CGG | - | tig0023681:33530-33549 | Msa1410610:CDS | 25.0% |
!! | TAGAGTGTTAAACAATGATT+TGG | - | tig0023681:33590-33609 | Msa1410610:CDS | 25.0% |
ATAATGAGACTAAGAACCAT+TGG | - | tig0023681:33374-33393 | Msa1410610:intron | 30.0% | |
TAATGAGACTAAGAACCATT+GGG | - | tig0023681:33375-33394 | Msa1410610:intron | 30.0% | |
ATACCATGGAGATAAAAATG+AGG | - | tig0023681:33423-33442 | Msa1410610:intron | 30.0% | |
TACCATGGAGATAAAAATGA+GGG | - | tig0023681:33424-33443 | Msa1410610:intron | 30.0% | |
!! | TTTTAAGTCGGAAAAAAGTG+AGG | - | tig0023681:33542-33561 | Msa1410610:CDS | 30.0% |
! | TGATTTGGATGTTTCAATGA+AGG | - | tig0023681:33605-33624 | Msa1410610:CDS | 30.0% |
! | TTTGAAGCAATACCAAAGAA+GGG | + | tig0023681:33644-33663 | None:intergenic | 30.0% |
! | ATTTGAAGCAATACCAAAGA+AGG | + | tig0023681:33645-33664 | None:intergenic | 30.0% |
! | CAATTTGAGACTGAGAATAA+TGG | - | tig0023681:33741-33760 | Msa1410610:CDS | 30.0% |
TGAGAATAATGGTGAAGAAA+TGG | - | tig0023681:33752-33771 | Msa1410610:CDS | 30.0% | |
! | AATAGTACTTTTGCCAATCA+AGG | - | tig0023681:33798-33817 | Msa1410610:CDS | 30.0% |
AAGAAACTTTCTGTTAGAAG+AGG | - | tig0023681:33858-33877 | Msa1410610:CDS | 30.0% | |
ATAATGAGACTAAGAACCAT+TGG | - | tig0023681:33374-33393 | Msa1410610:intron | 30.0% | |
TAATGAGACTAAGAACCATT+GGG | - | tig0023681:33375-33394 | Msa1410610:intron | 30.0% | |
ATACCATGGAGATAAAAATG+AGG | - | tig0023681:33423-33442 | Msa1410610:intron | 30.0% | |
TACCATGGAGATAAAAATGA+GGG | - | tig0023681:33424-33443 | Msa1410610:intron | 30.0% | |
!! | TTTTAAGTCGGAAAAAAGTG+AGG | - | tig0023681:33542-33561 | Msa1410610:CDS | 30.0% |
! | TGATTTGGATGTTTCAATGA+AGG | - | tig0023681:33605-33624 | Msa1410610:CDS | 30.0% |
! | TTTGAAGCAATACCAAAGAA+GGG | + | tig0023681:33644-33663 | None:intergenic | 30.0% |
! | ATTTGAAGCAATACCAAAGA+AGG | + | tig0023681:33645-33664 | None:intergenic | 30.0% |
! | CAATTTGAGACTGAGAATAA+TGG | - | tig0023681:33741-33760 | Msa1410610:CDS | 30.0% |
TGAGAATAATGGTGAAGAAA+TGG | - | tig0023681:33752-33771 | Msa1410610:CDS | 30.0% | |
! | AATAGTACTTTTGCCAATCA+AGG | - | tig0023681:33798-33817 | Msa1410610:CDS | 30.0% |
AAGAAACTTTCTGTTAGAAG+AGG | - | tig0023681:33858-33877 | Msa1410610:CDS | 30.0% | |
ACACTACGTAGATGGTAAAT+CGG | - | tig0023681:33171-33190 | Msa1410610:CDS | 35.0% | |
AATGTAAATACGGATCCAGT+AGG | + | tig0023681:33271-33290 | None:intergenic | 35.0% | |
GTTTCATAAAGTGGATCGAT+GGG | + | tig0023681:33346-33365 | None:intergenic | 35.0% | |
TGTTTCATAAAGTGGATCGA+TGG | + | tig0023681:33347-33366 | None:intergenic | 35.0% | |
AATGAGACTAAGAACCATTG+GGG | - | tig0023681:33376-33395 | Msa1410610:intron | 35.0% | |
AAAACGTATGTTGCATACCA+TGG | - | tig0023681:33409-33428 | Msa1410610:intron | 35.0% | |
ACCATGGAGATAAAAATGAG+GGG | - | tig0023681:33425-33444 | Msa1410610:intron | 35.0% | |
TGAGGTTGGACTTTCAATAA+TGG | - | tig0023681:33560-33579 | Msa1410610:CDS | 35.0% | |
!! | TTCAACAAGTATCGAGAACA+TGG | - | tig0023681:33667-33686 | Msa1410610:CDS | 35.0% |
!! | AAGTATCGAGAACATGGATT+TGG | - | tig0023681:33673-33692 | Msa1410610:CDS | 35.0% |
TCCTATAATCACACCTTGAT+TGG | + | tig0023681:33814-33833 | None:intergenic | 35.0% | |
ACACTACGTAGATGGTAAAT+CGG | - | tig0023681:33171-33190 | Msa1410610:CDS | 35.0% | |
AATGTAAATACGGATCCAGT+AGG | + | tig0023681:33271-33290 | None:intergenic | 35.0% | |
GTTTCATAAAGTGGATCGAT+GGG | + | tig0023681:33346-33365 | None:intergenic | 35.0% | |
TGTTTCATAAAGTGGATCGA+TGG | + | tig0023681:33347-33366 | None:intergenic | 35.0% | |
AATGAGACTAAGAACCATTG+GGG | - | tig0023681:33376-33395 | Msa1410610:intron | 35.0% | |
AAAACGTATGTTGCATACCA+TGG | - | tig0023681:33409-33428 | Msa1410610:intron | 35.0% | |
ACCATGGAGATAAAAATGAG+GGG | - | tig0023681:33425-33444 | Msa1410610:intron | 35.0% | |
TGAGGTTGGACTTTCAATAA+TGG | - | tig0023681:33560-33579 | Msa1410610:CDS | 35.0% | |
!! | TTCAACAAGTATCGAGAACA+TGG | - | tig0023681:33667-33686 | Msa1410610:CDS | 35.0% |
!! | AAGTATCGAGAACATGGATT+TGG | - | tig0023681:33673-33692 | Msa1410610:CDS | 35.0% |
TCCTATAATCACACCTTGAT+TGG | + | tig0023681:33814-33833 | None:intergenic | 35.0% | |
TCACGAAGATGGTCTCATTA+AGG | - | tig0023681:33222-33241 | Msa1410610:CDS | 40.0% | |
!! | TCCCCTCATTTTTATCTCCA+TGG | + | tig0023681:33429-33448 | None:intergenic | 40.0% |
AAGTCGGAAAAAAGTGAGGT+TGG | - | tig0023681:33546-33565 | Msa1410610:CDS | 40.0% | |
TCCTTATGAACACCCTTCTT+TGG | - | tig0023681:33629-33648 | Msa1410610:CDS | 40.0% | |
!! | ACCAAAGAAGGGTGTTCATA+AGG | + | tig0023681:33633-33652 | None:intergenic | 40.0% |
AACATGGATTTGGAAGTGGA+CGG | - | tig0023681:33683-33702 | Msa1410610:CDS | 40.0% | |
! | TTGTGCTGCTCAAACTCATA+TGG | - | tig0023681:33716-33735 | Msa1410610:CDS | 40.0% |
GTGAAGAAATGGAACTGTCT+AGG | - | tig0023681:33763-33782 | Msa1410610:CDS | 40.0% | |
GAACTGTCTAGGCAAACAAA+TGG | - | tig0023681:33774-33793 | Msa1410610:CDS | 40.0% | |
GCCAATCAAGGTGTGATTAT+AGG | - | tig0023681:33810-33829 | Msa1410610:CDS | 40.0% | |
TCACGAAGATGGTCTCATTA+AGG | - | tig0023681:33222-33241 | Msa1410610:CDS | 40.0% | |
!! | TCCCCTCATTTTTATCTCCA+TGG | + | tig0023681:33429-33448 | None:intergenic | 40.0% |
AAGTCGGAAAAAAGTGAGGT+TGG | - | tig0023681:33546-33565 | Msa1410610:CDS | 40.0% | |
TCCTTATGAACACCCTTCTT+TGG | - | tig0023681:33629-33648 | Msa1410610:CDS | 40.0% | |
!! | ACCAAAGAAGGGTGTTCATA+AGG | + | tig0023681:33633-33652 | None:intergenic | 40.0% |
AACATGGATTTGGAAGTGGA+CGG | - | tig0023681:33683-33702 | Msa1410610:CDS | 40.0% | |
! | TTGTGCTGCTCAAACTCATA+TGG | - | tig0023681:33716-33735 | Msa1410610:CDS | 40.0% |
GTGAAGAAATGGAACTGTCT+AGG | - | tig0023681:33763-33782 | Msa1410610:CDS | 40.0% | |
GAACTGTCTAGGCAAACAAA+TGG | - | tig0023681:33774-33793 | Msa1410610:CDS | 40.0% | |
GCCAATCAAGGTGTGATTAT+AGG | - | tig0023681:33810-33829 | Msa1410610:CDS | 40.0% | |
TGAACACGCAGTTTCAGTAG+AGG | - | tig0023681:33129-33148 | Msa1410610:CDS | 45.0% | |
GAACACGCAGTTTCAGTAGA+GGG | - | tig0023681:33130-33149 | Msa1410610:CDS | 45.0% | |
AACACGCAGTTTCAGTAGAG+GGG | - | tig0023681:33131-33150 | Msa1410610:CDS | 45.0% | |
ACAGTGTCACACTACGTAGA+TGG | - | tig0023681:33163-33182 | Msa1410610:CDS | 45.0% | |
! | TTCGTTTTCTACGGACCTAC+TGG | - | tig0023681:33253-33272 | Msa1410610:CDS | 45.0% |
AGACTAAGAACCATTGGGGA+GGG | - | tig0023681:33380-33399 | Msa1410610:intron | 45.0% | |
! | TTTTCGTAATCCCTCCCCAA+TGG | + | tig0023681:33393-33412 | None:intergenic | 45.0% |
TGTGCAGCAGAAGAGAAAGA+AGG | - | tig0023681:33459-33478 | Msa1410610:intron | 45.0% | |
GTGCAGCAGAAGAGAAAGAA+GGG | - | tig0023681:33460-33479 | Msa1410610:intron | 45.0% | |
! | AAAGCCTTGTGCAATCAGAG+TGG | - | tig0023681:33489-33508 | Msa1410610:CDS | 45.0% |
CGAGAACATGGATTTGGAAG+TGG | - | tig0023681:33679-33698 | Msa1410610:CDS | 45.0% | |
TGAACACGCAGTTTCAGTAG+AGG | - | tig0023681:33129-33148 | Msa1410610:CDS | 45.0% | |
GAACACGCAGTTTCAGTAGA+GGG | - | tig0023681:33130-33149 | Msa1410610:CDS | 45.0% | |
AACACGCAGTTTCAGTAGAG+GGG | - | tig0023681:33131-33150 | Msa1410610:CDS | 45.0% | |
ACAGTGTCACACTACGTAGA+TGG | - | tig0023681:33163-33182 | Msa1410610:CDS | 45.0% | |
! | TTCGTTTTCTACGGACCTAC+TGG | - | tig0023681:33253-33272 | Msa1410610:CDS | 45.0% |
AGACTAAGAACCATTGGGGA+GGG | - | tig0023681:33380-33399 | Msa1410610:intron | 45.0% | |
! | TTTTCGTAATCCCTCCCCAA+TGG | + | tig0023681:33393-33412 | None:intergenic | 45.0% |
TGTGCAGCAGAAGAGAAAGA+AGG | - | tig0023681:33459-33478 | Msa1410610:intron | 45.0% | |
GTGCAGCAGAAGAGAAAGAA+GGG | - | tig0023681:33460-33479 | Msa1410610:intron | 45.0% | |
! | AAAGCCTTGTGCAATCAGAG+TGG | - | tig0023681:33489-33508 | Msa1410610:CDS | 45.0% |
CGAGAACATGGATTTGGAAG+TGG | - | tig0023681:33679-33698 | Msa1410610:CDS | 45.0% | |
! | TTTTCCATCGGAGAAGAGCG+TGG | - | tig0023681:33084-33103 | Msa1410610:CDS | 50.0% |
! | TTTCCATCGGAGAAGAGCGT+GGG | - | tig0023681:33085-33104 | Msa1410610:CDS | 50.0% |
GAGACTAAGAACCATTGGGG+AGG | - | tig0023681:33379-33398 | Msa1410610:intron | 50.0% | |
! | TGTGCCACTCTGATTGCACA+AGG | + | tig0023681:33496-33515 | None:intergenic | 50.0% |
! | TTTTCCATCGGAGAAGAGCG+TGG | - | tig0023681:33084-33103 | Msa1410610:CDS | 50.0% |
! | TTTCCATCGGAGAAGAGCGT+GGG | - | tig0023681:33085-33104 | Msa1410610:CDS | 50.0% |
GAGACTAAGAACCATTGGGG+AGG | - | tig0023681:33379-33398 | Msa1410610:intron | 50.0% | |
! | TGTGCCACTCTGATTGCACA+AGG | + | tig0023681:33496-33515 | None:intergenic | 50.0% |
CGCAGTTTCAGTAGAGGGGA+AGG | - | tig0023681:33135-33154 | Msa1410610:CDS | 55.0% | |
CGCAGTTTCAGTAGAGGGGA+AGG | - | tig0023681:33135-33154 | Msa1410610:CDS | 55.0% | |
GTTCCCACGCTCTTCTCCGA+TGG | + | tig0023681:33091-33110 | None:intergenic | 60.0% | |
GTTCCCACGCTCTTCTCCGA+TGG | + | tig0023681:33091-33110 | None:intergenic | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
tig0023681 | gene | 33073 | 33887 | 33073 | ID=Msa1410610;Name=Msa1410610 |
tig0023681 | mRNA | 33073 | 33887 | 33073 | ID=Msa1410610-mRNA-1;Parent=Msa1410610;Name=Msa1410610-mRNA-1;_AED=0.28;_eAED=0.28;_QI=0|0|0|1|1|1|2|0|241 |
tig0023681 | exon | 33464 | 33887 | 33464 | ID=Msa1410610-mRNA-1:exon:26679;Parent=Msa1410610-mRNA-1 |
tig0023681 | exon | 33073 | 33374 | 33073 | ID=Msa1410610-mRNA-1:exon:26678;Parent=Msa1410610-mRNA-1 |
tig0023681 | CDS | 33464 | 33887 | 33464 | ID=Msa1410610-mRNA-1:cds;Parent=Msa1410610-mRNA-1 |
tig0023681 | CDS | 33073 | 33374 | 33073 | ID=Msa1410610-mRNA-1:cds;Parent=Msa1410610-mRNA-1 |
Gene Sequence |
Protein sequence |