AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1412260

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1412260 MtrunA17_Chr8g0386371 91.094 1325 94 1 1 1301 1 1325 0.0 2424
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 284 sgRNAs with CRISPR-Local

Find 597 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCCGGGCTCTTTCTTCTTAC+TGG 0.130822 tig0023878:-10883 None:intergenic
GCTAGTGCCTTTCTTCTTAT+TGG 0.147139 tig0023878:-7038 None:intergenic
TTGTCTTCTACTTGGTTTAA+TGG 0.156026 tig0023878:-8340 None:intergenic
CATGGAATTACTTCTCAATT+AGG 0.201965 tig0023878:+5149 Msa1412260:five_prime_UTR
TTCTTCTTACTGGATTTGTT+TGG 0.211320 tig0023878:-10873 None:intergenic
TTTGGGTTGGTATGAAATTC+TGG 0.220335 tig0023878:-10855 None:intergenic
TTTGCATTTAAGACTCTTAC+AGG 0.232400 tig0023878:+13204 Msa1412260:CDS
GTATCAGCGTTGCCAGATTT+TGG 0.244275 tig0023878:+13306 Msa1412260:CDS
GAATTGCAGGATCCGATTAT+TGG 0.252063 tig0023878:-5115 None:intergenic
TTTGACCTCTTTCTTTCTCT+TGG 0.263749 tig0023878:-11519 None:intergenic
AAAACGTTGTACATCCTTCT+TGG 0.276092 tig0023878:-8289 None:intergenic
TAAGCTTTCAACTGGTTCTT+TGG 0.281208 tig0023878:-10418 None:intergenic
GACTCTCACTGGTGCTTTGC+CGG 0.281449 tig0023878:+11922 Msa1412260:CDS
CAAAACATTTCAGTTTATAA+TGG 0.284488 tig0023878:+11359 Msa1412260:CDS
TGTTTCTCCTCCTCCTTGTT+TGG 0.291146 tig0023878:-7070 None:intergenic
GATTTCTCATCATCCACTTC+AGG 0.296303 tig0023878:-11149 None:intergenic
TCTGCAGCAGGTATGATTCT+AGG 0.302879 tig0023878:-11110 None:intergenic
TCTTCTTACTGGATTTGTTT+GGG 0.306969 tig0023878:-10872 None:intergenic
TTTGAAAATTATTATTGAAC+TGG 0.307637 tig0023878:-13476 None:intergenic
CAGGTTGCTAAGGGTGAATT+TGG 0.310805 tig0023878:+13072 Msa1412260:CDS
CATTTCTCTTCCTCCTTGCT+TGG 0.311996 tig0023878:-7160 None:intergenic
ATGGAATTACTTCTCAATTA+GGG 0.320560 tig0023878:+5150 Msa1412260:five_prime_UTR
TAGAATTTGTATGTATTTGA+TGG 0.331318 tig0023878:-6959 None:intergenic
TTTGCTATGCTCTAGGTTGC+AGG 0.333766 tig0023878:+7929 Msa1412260:intron
CAGGTTGCTGAGGGTGAATT+TGG 0.343581 tig0023878:+12748 Msa1412260:CDS
CTGTTCCTTGTGAACAGTTT+GGG 0.344613 tig0023878:-11789 None:intergenic
GGCTATGGGATCTGCATATA+AGG 0.346775 tig0023878:+6187 Msa1412260:CDS
CTCCCATACAACTCATTGTT+TGG 0.346932 tig0023878:-11998 None:intergenic
CTCATTGATGACTGCTGCCC+TGG 0.347569 tig0023878:-13390 None:intergenic
CATTTCTCTCCGTCCTTGCT+TGG 0.353432 tig0023878:-7238 None:intergenic
GTTGATAATCCTCTTGATAA+TGG 0.353757 tig0023878:+11263 Msa1412260:CDS
CGGTTGTCAAAGCGACTTGC+TGG 0.356357 tig0023878:+11551 Msa1412260:CDS
AACATGATGAGGAATTTGTT+TGG 0.357366 tig0023878:+12304 Msa1412260:CDS
AACTACTCTAGGCGCTGATA+TGG 0.358663 tig0023878:+10692 Msa1412260:CDS
GGACGTTCGTCAGCTTTCTC+TGG 0.359914 tig0023878:-6110 None:intergenic
AACATAATGATGAGTTTGTT+TGG 0.363290 tig0023878:+12946 Msa1412260:CDS
GATTCTCCATTGGTGAATTT+AGG 0.366382 tig0023878:-12166 None:intergenic
CCTTTGCATTCCACTACTCT+TGG 0.366457 tig0023878:+11186 Msa1412260:CDS
CAACTCCGGGACAACCTTGC+AGG 0.372248 tig0023878:-13434 None:intergenic
TCTTGATATTGTCTTCTACT+TGG 0.375662 tig0023878:-8348 None:intergenic
ACGACATCTTGAAACTATAA+AGG 0.384153 tig0023878:+7000 Msa1412260:CDS
TAGTCCTCAACACAGGTTCC+AGG 0.387395 tig0023878:-12861 None:intergenic
TCCACTTGTTTGTCTGCAGC+AGG 0.389170 tig0023878:-11122 None:intergenic
GGAGCATCTAACCATCTCTA+TGG 0.392261 tig0023878:+11671 Msa1412260:CDS
GAAGTGGCATAAAGAAAGAT+TGG 0.392292 tig0023878:+8017 Msa1412260:CDS
CAGCCATTAGGCAACCATTC+AGG 0.393639 tig0023878:-6131 None:intergenic
AGCATAATGAGAAATTTGTT+TGG 0.395674 tig0023878:+12622 Msa1412260:CDS
GCTGTTCCTTGTGAACAGTT+TGG 0.397453 tig0023878:-11790 None:intergenic
CTTACTGGATTTGTTTGGGT+TGG 0.400869 tig0023878:-10868 None:intergenic
GAGGAAAATTTAGCAGTTCA+AGG 0.403757 tig0023878:+13240 Msa1412260:CDS
GTCATTGTCAATCCGTTTGT+TGG 0.404392 tig0023878:-5953 None:intergenic
AGAGCCCGGCATTCCTTGTC+GGG 0.413690 tig0023878:+10896 Msa1412260:CDS
CATAGCCGGACCACTTTGTC+GGG 0.414376 tig0023878:-6171 None:intergenic
TGGAGAAATGAACGAATTGC+AGG 0.419298 tig0023878:-5128 None:intergenic
TTCCTTGAGTTGTTAACATC+GGG 0.419585 tig0023878:-10447 None:intergenic
CCTCCTTGCTTGGAGAATGC+TGG 0.422992 tig0023878:-7150 None:intergenic
TGGTCTGTAAGCTTGGTAAC+TGG 0.423826 tig0023878:-11044 None:intergenic
CCTCCATCATGACAGTTAAC+AGG 0.423982 tig0023878:-13276 None:intergenic
CATGACAGTTAACAGGTTCC+TGG 0.424130 tig0023878:-13269 None:intergenic
GGCAATTCTAAGCTTTCAAC+TGG 0.426691 tig0023878:-10426 None:intergenic
AGGCAACAACATAAGGAATC+TGG 0.427206 tig0023878:+12525 Msa1412260:CDS
TTCTAGAATGATGCAGAAGT+TGG 0.427230 tig0023878:-12360 None:intergenic
TTCTAGAATGATGCAGAAGT+TGG 0.427230 tig0023878:-13002 None:intergenic
CCGACAAAGTGGTCCGGCTA+TGG 0.429215 tig0023878:+6172 Msa1412260:CDS
TGTCTCTTGGCAGCAGGTGA+TGG 0.429849 tig0023878:-10229 None:intergenic
AAACTGGAAGATCCAAAATC+TGG 0.430033 tig0023878:-13318 None:intergenic
AAGCAACATGATAAGGAATC+TGG 0.432570 tig0023878:+12201 Msa1412260:CDS
TCAATTTCAGGGACTGTAGA+AGG 0.434912 tig0023878:-11287 None:intergenic
TCAGAGCTCACCTTACCATT+TGG 0.436408 tig0023878:+11860 Msa1412260:CDS
TGCATGGGTGTAGACTGCTT+TGG 0.439557 tig0023878:-10256 None:intergenic
TGGAGAATGCTGCTTACTCT+TGG 0.441902 tig0023878:-7095 None:intergenic
CAGTCTTCAAAGATACTGCT+TGG 0.444071 tig0023878:+12100 Msa1412260:CDS
TTCTAGAACGATGCAGAAGT+TGG 0.445545 tig0023878:-12678 None:intergenic
GAGTCTTGAATGCAAATTCC+AGG 0.448695 tig0023878:-11904 None:intergenic
GTCGCGAAAGCAACATGATA+AGG 0.452779 tig0023878:+12194 Msa1412260:CDS
GGTACATCGGAGCAGCCTCC+AGG 0.452859 tig0023878:+12769 Msa1412260:CDS
CGTCCTGAATGGTTGCCTAA+TGG 0.454991 tig0023878:+6128 Msa1412260:CDS
TTGCTTGTGTCCATTGCGTT+TGG 0.456520 tig0023878:-10762 None:intergenic
CTGAATGGTTGCCTAATGGC+TGG 0.462074 tig0023878:+6132 Msa1412260:CDS
TCAAGATGTCGTAATACCTC+AGG 0.462437 tig0023878:-6989 None:intergenic
TTGATTGCATAATCCAAGCT+TGG 0.463182 tig0023878:-11215 None:intergenic
TTTACTTCTTTAATCCATCC+AGG 0.463808 tig0023878:-7980 None:intergenic
ATGGTTGCTCTTGATACCTC+AGG 0.466320 tig0023878:+10501 Msa1412260:CDS
CCATAGCCGGACCACTTTGT+CGG 0.466321 tig0023878:-6172 None:intergenic
TTTAACGTTACAGTTTGAAA+TGG 0.469195 tig0023878:-13114 None:intergenic
TTGAGGACTAGCTCCCCATC+TGG 0.469895 tig0023878:+12874 Msa1412260:CDS
CTCTTGGTCTGACCCAAGCT+TGG 0.470998 tig0023878:+11202 Msa1412260:CDS
TGATGACTGCTGCCCTGGCA+TGG 0.471120 tig0023878:-13385 None:intergenic
TGATTGCATAATCCAAGCTT+GGG 0.471659 tig0023878:-11214 None:intergenic
ATAGAGGTGCACACATTGCT+TGG 0.473914 tig0023878:-7277 None:intergenic
GTCATGAAGGCAACAACATA+AGG 0.474479 tig0023878:+12518 Msa1412260:CDS
GCGACTTGCTGGCATTGAAC+CGG 0.474851 tig0023878:+11562 Msa1412260:CDS
CCTTACCATTTGGTGAATCC+TGG 0.476635 tig0023878:+11870 Msa1412260:CDS
ATGTCGTAATACCTCAGGTT+TGG 0.478015 tig0023878:-6984 None:intergenic
ACTTCGATATCCCAGCCATT+AGG 0.479281 tig0023878:-6143 None:intergenic
TTTCCCGACTCTCTATGTAA+TGG 0.484000 tig0023878:-11071 None:intergenic
ACAGGAGGGAAGTCCATGCC+AGG 0.484013 tig0023878:+13372 Msa1412260:CDS
CCTGCATTTGACACTGTCAC+TGG 0.484079 tig0023878:+11320 Msa1412260:CDS
TTGAGGACTAGCTCCACATC+TGG 0.485220 tig0023878:+12556 Msa1412260:CDS
CTGCCAAACAATGAGTTGTA+TGG 0.485882 tig0023878:+11995 Msa1412260:CDS
TTATCAGAAGGGCTTGCCTC+CGG 0.488208 tig0023878:-11581 None:intergenic
TGCTCTTCCAATAAGAAGAA+AGG 0.488441 tig0023878:+7031 Msa1412260:CDS
CCAGTGACAGTGTCAAATGC+AGG 0.489768 tig0023878:-11320 None:intergenic
CTGAGCCTGCAAGGTTGTCC+CGG 0.491049 tig0023878:+13429 Msa1412260:CDS
TGGTACATTGGATCAACCAC+CGG 0.497117 tig0023878:+12450 Msa1412260:CDS
CGGGCTTCAAAACGACTGGC+TGG 0.498052 tig0023878:+10915 Msa1412260:CDS
AAGAAAGAGCGTAATATGAA+TGG 0.498524 tig0023878:+12076 Msa1412260:CDS
GGATATGGAGTTCATCAGCC+TGG 0.500596 tig0023878:-10946 None:intergenic
TTCTCATTTCACTTTGACAC+AGG 0.502289 tig0023878:+13354 Msa1412260:CDS
TGTTCACAAGGAACAGCAAT+CGG 0.502711 tig0023878:+11796 Msa1412260:CDS
TTGTTGTTGCGGATCAACTC+CGG 0.506435 tig0023878:-13448 None:intergenic
AAGAGCCCGGCATTCCTTGT+CGG 0.506505 tig0023878:+10895 Msa1412260:CDS
CGACAAAGTGGTCCGGCTAT+GGG 0.508093 tig0023878:+6173 Msa1412260:CDS
TAAATCATCTCAGCATTTCA+AGG 0.509593 tig0023878:+10719 Msa1412260:CDS
TGTTGTTGCGGATCAACTCC+GGG 0.511033 tig0023878:-13447 None:intergenic
TCTAGAATGATGCAGAAGTT+GGG 0.511069 tig0023878:-12359 None:intergenic
TCTAGAATGATGCAGAAGTT+GGG 0.511069 tig0023878:-13001 None:intergenic
TCTAGAACGATGCAGAAGTT+GGG 0.512660 tig0023878:-12677 None:intergenic
AAGTGGCATAAAGAAAGATT+GGG 0.512803 tig0023878:+8018 Msa1412260:CDS
TTGTCGGGCTTCAAAACGAC+TGG 0.513780 tig0023878:+10911 Msa1412260:CDS
GTTGTACATCCTTCTTGGAA+TGG 0.513958 tig0023878:-8284 None:intergenic
AACTCAGCAGAAGAATCAAC+CGG 0.514125 tig0023878:-11941 None:intergenic
TTATCAAGAGGATTATCAAC+TGG 0.514593 tig0023878:-11260 None:intergenic
TTTGCATTCAAGACTCTCAC+TGG 0.514930 tig0023878:+11911 Msa1412260:CDS
TTGAAAATTATTATTGAACT+GGG 0.516712 tig0023878:-13475 None:intergenic
GGAAAATTTAGCAGTTCAAG+GGG 0.517942 tig0023878:+13242 Msa1412260:CDS
TTCCCATCTCTGAGCCTGCA+AGG 0.518273 tig0023878:+13420 Msa1412260:CDS
GGATTAAAGAAGTAAAGATT+CGG 0.519086 tig0023878:+7987 Msa1412260:CDS
CATCTAACCATCTCTATGGT+GGG 0.520294 tig0023878:+11675 Msa1412260:CDS
AAAATCCAAGAGAAAGAAAG+AGG 0.520443 tig0023878:+11514 Msa1412260:CDS
GAAGCCCGACAAGGAATGCC+GGG 0.521380 tig0023878:-10900 None:intergenic
TTAAATGCAAATTCTAAGCA+TGG 0.525992 tig0023878:-13192 None:intergenic
TGAAGCCCGACAAGGAATGC+CGG 0.527174 tig0023878:-10901 None:intergenic
AGGCAACAACATGAGGAACC+TGG 0.528981 tig0023878:+12843 Msa1412260:CDS
ACATTGTCAACCAACTTGAC+AGG 0.528995 tig0023878:-10618 None:intergenic
TCAGTTTCATGGACGGTAGC+GGG 0.529051 tig0023878:-11383 None:intergenic
TCTGACCAGGATTCACCAAA+TGG 0.530338 tig0023878:-11875 None:intergenic
CAACCTTGCAGGCTCAGAGA+TGG 0.530486 tig0023878:-13423 None:intergenic
TTTCCTTGAGTTGTTAACAT+CGG 0.530800 tig0023878:-10448 None:intergenic
GCACCATTACATAGAGAGTC+GGG 0.531421 tig0023878:+11068 Msa1412260:CDS
TGCCCGATGTTAACAACTCA+AGG 0.533016 tig0023878:+10445 Msa1412260:CDS
GGAGAATCTCTTAGTCATGA+AGG 0.533330 tig0023878:+12823 Msa1412260:CDS
CAAATTCACCCTTAGCAACC+TGG 0.533831 tig0023878:-13071 None:intergenic
AGTCTTCAAAGATACTGCTT+GGG 0.534640 tig0023878:+12101 Msa1412260:CDS
CTAAACATATTAGTAATGAT+AGG 0.535909 tig0023878:+11831 Msa1412260:CDS
TACAAGATTCTCTGTTGCCA+TGG 0.536293 tig0023878:-12495 None:intergenic
AACCTTGCAGGCTCAGAGAT+GGG 0.537883 tig0023878:-13422 None:intergenic
TACTCAAGAGCTTTATCAGA+AGG 0.538192 tig0023878:-11593 None:intergenic
ACTTGGTTTAATGGCACACT+TGG 0.538980 tig0023878:-8331 None:intergenic
AGACGCATGACGAGTAAGCT+TGG 0.540487 tig0023878:-11705 None:intergenic
AGGAAAATTTAGCAGTTCAA+GGG 0.541169 tig0023878:+13241 Msa1412260:CDS
AGAGAATCTTGTAGTCATGA+AGG 0.541432 tig0023878:+12505 Msa1412260:CDS
ATGTTAACAACTCAAGGAAA+GGG 0.541575 tig0023878:+10451 Msa1412260:CDS
ATCAGTTTCATGGACGGTAG+CGG 0.547328 tig0023878:-11384 None:intergenic
TCCAGTAAGAAGAAAGAGCC+CGG 0.547845 tig0023878:+10882 Msa1412260:CDS
TGCCAAACAATGAGTTGTAT+GGG 0.548403 tig0023878:+11996 Msa1412260:CDS
GACTGGCTGGATCTGAACCC+AGG 0.548529 tig0023878:+10928 Msa1412260:CDS
GCAATTCGTTCATTTCTCCA+TGG 0.550063 tig0023878:+5131 Msa1412260:five_prime_UTR
TGGAATACATATCCACTCAC+TGG 0.551219 tig0023878:-8264 None:intergenic
GAACCTGTTAACTGTCATGA+TGG 0.554557 tig0023878:+13273 Msa1412260:CDS
AACTGGGAATATTGTTGTTG+CGG 0.554594 tig0023878:-13459 None:intergenic
GTTAAAAGTACAGTTGCAGT+GGG 0.555405 tig0023878:-11644 None:intergenic
CTGTTAACTGTCATGATGGA+GGG 0.557709 tig0023878:+13277 Msa1412260:CDS
GAAACTAAAACGTTAAACAA+TGG 0.559589 tig0023878:+12796 Msa1412260:CDS
AAGCTGACGAACGTCCTGAA+TGG 0.559865 tig0023878:+6117 Msa1412260:CDS
AATCTGGAGGAACCAACAAA+CGG 0.560339 tig0023878:+5941 Msa1412260:CDS
TAAATGCAAATTCTAAGCAT+GGG 0.560755 tig0023878:-13191 None:intergenic
AAATGACCAGGTTGCTGAGG+GGG 0.562559 tig0023878:+12423 Msa1412260:CDS
AACGTTACAGTTTGAAATGG+CGG 0.562874 tig0023878:-13111 None:intergenic
CCAGGATTCACCAAATGGTA+AGG 0.563925 tig0023878:-11870 None:intergenic
CTAATTGAGAAGTAATTCCA+TGG 0.564147 tig0023878:-5148 None:intergenic
AGCTGAATTGCAACTAAGTG+AGG 0.565303 tig0023878:+11016 Msa1412260:CDS
TGAATGGTTGCCTAATGGCT+GGG 0.565873 tig0023878:+6133 Msa1412260:CDS
AAAGTTTCGACTCCTAGTGT+TGG 0.568857 tig0023878:+11968 Msa1412260:CDS
TCATTTCACTTTGACACAGG+AGG 0.569150 tig0023878:+13357 Msa1412260:CDS
GATGTTAACAACTCAAGGAA+AGG 0.569567 tig0023878:+10450 Msa1412260:CDS
TAGAACCCGACAAAGTGGTC+CGG 0.570129 tig0023878:+6166 Msa1412260:CDS
TTGAATGCAAATTCCAGGCA+TGG 0.570598 tig0023878:-11899 None:intergenic
TAACATGCATTCTCCAAACA+AGG 0.572397 tig0023878:+7186 Msa1412260:CDS
TGGAGGATCTACCACCTGGA+TGG 0.573332 tig0023878:+7966 Msa1412260:CDS
AGTCGCTTTGACAACCGCAT+AGG 0.573354 tig0023878:-11545 None:intergenic
TTTCTTCCCCACCATAGAGA+TGG 0.573652 tig0023878:-11682 None:intergenic
ATCCTGGTCAGATCCATGCC+TGG 0.574579 tig0023878:+11886 Msa1412260:CDS
GTCGCTTTGACAACCGCATA+GGG 0.575031 tig0023878:-11544 None:intergenic
AATGTGTCTAAATTAGCCAC+TGG 0.575361 tig0023878:+12901 Msa1412260:CDS
AACTGTCATGATGGAGGGGA+TGG 0.576525 tig0023878:+13282 Msa1412260:CDS
AGTTAAAAGTACAGTTGCAG+TGG 0.577236 tig0023878:-11645 None:intergenic
TTCCAGGCATGGATCTGACC+AGG 0.578611 tig0023878:-11888 None:intergenic
GCATCTAACCATCTCTATGG+TGG 0.578703 tig0023878:+11674 Msa1412260:CDS
GGTACATTGGATCAACCACC+GGG 0.579078 tig0023878:+12451 Msa1412260:CDS
TTGAGGTCTAGCTCCACACC+TGG 0.579298 tig0023878:+12232 Msa1412260:CDS
TTTGGCAGTTCACCAACACT+AGG 0.580095 tig0023878:-11980 None:intergenic
GAATTGCAACTAAGTGAGGG+TGG 0.580593 tig0023878:+11020 Msa1412260:CDS
TTGAATATCAGTTTCATGGA+CGG 0.582377 tig0023878:-11390 None:intergenic
CATTTCACTTTGACACAGGA+GGG 0.582652 tig0023878:+13358 Msa1412260:CDS
TACGCTTTAGTTTCAAAACC+CGG 0.583891 tig0023878:-12469 None:intergenic
TGCACCATTACATAGAGAGT+CGG 0.584390 tig0023878:+11067 Msa1412260:CDS
TATGCAATCAATACCCTCAC+GGG 0.584830 tig0023878:+11227 Msa1412260:CDS
TGCTTGGGCAACCTGAGTTG+AGG 0.584991 tig0023878:+12116 Msa1412260:CDS
TGGTGCATGGTCTGTAAGCT+TGG 0.585017 tig0023878:-11051 None:intergenic
TACAGGTGTGATTCCAGTAG+AGG 0.585100 tig0023878:+13221 Msa1412260:CDS
ACCTGCTGCAGACAAACAAG+TGG 0.588791 tig0023878:+11121 Msa1412260:CDS
ATTGTGGAGGATCTACCACC+TGG 0.589100 tig0023878:+7962 Msa1412260:CDS
ACTCTCTATGTAATGGTGCA+TGG 0.590005 tig0023878:-11064 None:intergenic
ACTCAAGAGCTTTATCAGAA+GGG 0.590425 tig0023878:-11592 None:intergenic
TTATGCAATCAATACCCTCA+CGG 0.592881 tig0023878:+11226 Msa1412260:CDS
ATGATGTCAATGTGAGCCAT+CGG 0.593372 tig0023878:+10568 Msa1412260:CDS
TGGTTGCTCTTGATACCTCA+GGG 0.594405 tig0023878:+10502 Msa1412260:CDS
ATCTAACCATCTCTATGGTG+GGG 0.594533 tig0023878:+11676 Msa1412260:CDS
TAACCAGCATTCTCCAAGCA+AGG 0.595724 tig0023878:+7147 Msa1412260:CDS
AAAACGTTAAACAATGGCAA+TGG 0.596651 tig0023878:+12802 Msa1412260:CDS
GCGACTATGAGATTCTCCAT+TGG 0.596695 tig0023878:-12176 None:intergenic
GATATGGAGTTCATCAGCCT+GGG 0.597149 tig0023878:-10945 None:intergenic
AAATCATCTCAGCATTTCAA+GGG 0.598277 tig0023878:+10720 Msa1412260:CDS
GCATTCTCCAAACAAGGAGG+AGG 0.599562 tig0023878:+7063 Msa1412260:CDS
TGCAGGCTCAGAGATGGGAA+TGG 0.600438 tig0023878:-13417 None:intergenic
TTATCTCTTTCTAGTTGACG+TGG 0.601270 tig0023878:-10816 None:intergenic
AATATGCCTAAATTCACCAA+TGG 0.602518 tig0023878:+12160 Msa1412260:CDS
ACTTGCTGGCATTGAACCGG+AGG 0.603999 tig0023878:+11565 Msa1412260:CDS
CCTGTTAACTGTCATGATGG+AGG 0.606160 tig0023878:+13276 Msa1412260:CDS
GAAACTAAAGCGTATAACCA+TGG 0.606590 tig0023878:+12478 Msa1412260:CDS
GAATGTGCCATCTCGAATGA+TGG 0.609217 tig0023878:+10482 Msa1412260:CDS
CTTCCAAATGTAAAAGCACA+AGG 0.609245 tig0023878:+10979 Msa1412260:CDS
ATGATTATGAGATTCTCGAA+TGG 0.609264 tig0023878:-12593 None:intergenic
TAAGCAGCATTCTCCAAGCA+AGG 0.610399 tig0023878:+7102 Msa1412260:CDS
AACATGCATTCTCCAAACAA+GGG 0.610756 tig0023878:+7187 Msa1412260:CDS
CCAGTCTCCGTGAAAACCGA+TGG 0.611124 tig0023878:-10584 None:intergenic
CAGCATGCATTCTCCAAGCA+AGG 0.612883 tig0023878:+7225 Msa1412260:CDS
TGGTGTTGAACCTGTCAAGT+TGG 0.614025 tig0023878:+10608 Msa1412260:CDS
GTTACAGTTTGAAATGGCGG+TGG 0.614827 tig0023878:-13108 None:intergenic
GAAGTTAGAACCCGACAAAG+TGG 0.615611 tig0023878:+6161 Msa1412260:CDS
AGGCGAGAATTCCATTGTGG+AGG 0.616015 tig0023878:+7949 Msa1412260:CDS
TTATATGCAGATCCCATAGC+CGG 0.616036 tig0023878:-6185 None:intergenic
GGAATCTGGAACCTGTGTTG+AGG 0.619326 tig0023878:+12539 Msa1412260:CDS
AGTTTGAAAGCAGAAGTGCT+AGG 0.621435 tig0023878:+11731 Msa1412260:CDS
ATCATGAAGAGAACATGATG+AGG 0.621582 tig0023878:+12293 Msa1412260:CDS
TAAGGGTGAATTTGGTACAT+CGG 0.622183 tig0023878:+13080 Msa1412260:CDS
TGAGGGTGAATTTGGTACAT+CGG 0.622460 tig0023878:+12756 Msa1412260:CDS
GGAGAATCATCAAGAAAGTG+TGG 0.623687 tig0023878:+11752 Msa1412260:CDS
TGGTGGTAACACACCCGTGA+GGG 0.625772 tig0023878:-11240 None:intergenic
GGAATCTGGAACCTGTGTTG+AGG 0.626333 tig0023878:+12215 Msa1412260:CDS
AATCGAGCAACCAAACGCAA+TGG 0.628532 tig0023878:+10752 Msa1412260:CDS
AAGATTCGGAAGCACAGAAG+TGG 0.628849 tig0023878:+8001 Msa1412260:CDS
AAGGAGCTAGTCCTCAACTC+AGG 0.630553 tig0023878:-12127 None:intergenic
TAGCAAGCATTCTCCAAACA+AGG 0.631214 tig0023878:+7057 Msa1412260:CDS
TTGTTTGACAACGTTACTAG+AGG 0.631495 tig0023878:+11419 Msa1412260:CDS
TGGGAGAGTGACAACCAGCA+TGG 0.632248 tig0023878:+12015 Msa1412260:CDS
AGAGCAACCATCATTCGAGA+TGG 0.634631 tig0023878:-10489 None:intergenic
TGACAATGTGATTAATGATG+AGG 0.636184 tig0023878:+10632 Msa1412260:CDS
TGCAGGCGAGAATTCCATTG+TGG 0.639433 tig0023878:+7946 Msa1412260:CDS
ACATGCATTCTCCAAACAAG+GGG 0.641967 tig0023878:+7188 Msa1412260:CDS
GTCATGAAGGCAACAACATG+AGG 0.643679 tig0023878:+12836 Msa1412260:CDS
TGATACCCAAACTGTTCACA+AGG 0.643981 tig0023878:+11784 Msa1412260:CDS
ATGCATTCTCCAAGCAAGGA+CGG 0.644558 tig0023878:+7229 Msa1412260:CDS
AATTGCAACTAAGTGAGGGT+GGG 0.644736 tig0023878:+11021 Msa1412260:CDS
ACTGCAACTCAGTATTGTCG+TGG 0.650157 tig0023878:-13137 None:intergenic
GTAGAAGGTCCATTATCAAG+AGG 0.650449 tig0023878:-11272 None:intergenic
TCAAGAGGATTATCAACTGG+TGG 0.652934 tig0023878:-11257 None:intergenic
GCTGAATTGCAACTAAGTGA+GGG 0.654401 tig0023878:+11017 Msa1412260:CDS
GGAACCTGGAACCTGTGTTG+AGG 0.657171 tig0023878:+12857 Msa1412260:CDS
ATATGTATTCCATTCCAAGA+AGG 0.660953 tig0023878:+8275 Msa1412260:CDS
AGGTGGTAGATCCTCCACAA+TGG 0.665682 tig0023878:-7960 None:intergenic
TTGGGTCAGACCAAGAGTAG+TGG 0.666010 tig0023878:-11196 None:intergenic
TGTTAACTGTCATGATGGAG+GGG 0.666653 tig0023878:+13278 Msa1412260:CDS
CAGGAGGGAAGTCCATGCCA+GGG 0.676123 tig0023878:+13373 Msa1412260:CDS
CCAAGAGTAGTGGAATGCAA+AGG 0.680360 tig0023878:-11186 None:intergenic
GTGACTATGAAATTCTCCAG+TGG 0.680600 tig0023878:-12917 None:intergenic
GTGGAGCTAGTCCTCAACAC+AGG 0.684626 tig0023878:-12550 None:intergenic
GGGGAGCTAGTCCTCAACAC+AGG 0.684626 tig0023878:-12868 None:intergenic
TGGAATGCAAAGGACAGTTG+AGG 0.692734 tig0023878:-11176 None:intergenic
ATGATTGTGAGATTCTTGAG+TGG 0.696127 tig0023878:-12275 None:intergenic
CTGGTGGTAACACACCCGTG+AGG 0.700134 tig0023878:-11241 None:intergenic
GCAGCATTCTCCAAGCAAGG+AGG 0.711520 tig0023878:+7105 Msa1412260:CDS
CCAGCATTCTCCAAGCAAGG+AGG 0.712170 tig0023878:+7150 Msa1412260:CDS
CAAATTCTACTCCAAACCTG+AGG 0.713388 tig0023878:+6973 Msa1412260:CDS
GTGGAGCTAGACCTCAACAC+AGG 0.721025 tig0023878:-12226 None:intergenic
ACTTCTTTAATCCATCCAGG+TGG 0.722254 tig0023878:-7977 None:intergenic
CAAGCATTCTCCAAACAAGG+AGG 0.726483 tig0023878:+7060 Msa1412260:CDS
GGTTGCTCTTGATACCTCAG+GGG 0.734372 tig0023878:+10503 Msa1412260:CDS
GAAAATTTAGCAGTTCAAGG+GGG 0.735832 tig0023878:+13243 Msa1412260:CDS
AAGAGGTCAAAGTCCCTATG+CGG 0.737397 tig0023878:+11531 Msa1412260:CDS
GCTTTAGTTTCAAAACCCGG+TGG 0.754863 tig0023878:-12466 None:intergenic
AAAATGACCAGGTTGCTGAG+GGG 0.756061 tig0023878:+12422 Msa1412260:CDS
CATGCATTCTCCAAACAAGG+GGG 0.763333 tig0023878:+7189 Msa1412260:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAAATTTATTCATAATACA+AGG - tig0023878:6416-6435 None:intergenic 10.0%
!! TATTAAGAAATTAAAAAAGA+TGG + tig0023878:8111-8130 Msa1412260:intron 10.0%
!!! CTATAAATGAAATATATTTT+AGG + tig0023878:10301-10320 Msa1412260:intron 10.0%
!!! TTTAATTTGTCTTTCTTTTA+TGG + tig0023878:5459-5478 Msa1412260:intron 15.0%
!!! TATTATTTCTTGTTCAAATA+TGG + tig0023878:5492-5511 Msa1412260:intron 15.0%
!!! ATCTTGTAATTTATTTTTCT+TGG + tig0023878:5614-5633 Msa1412260:intron 15.0%
!! CAACTTCTAATAATAATTAA+AGG - tig0023878:7863-7882 None:intergenic 15.0%
!! AAAATGACAAGTAAAAAAAA+CGG - tig0023878:8542-8561 None:intergenic 15.0%
!!! GTTTTTTAATACAGTTTATT+GGG - tig0023878:9481-9500 None:intergenic 15.0%
!! AACATAAAAAATAACTAACA+TGG - tig0023878:9556-9575 None:intergenic 15.0%
!!! AATTCTTGTTATTAAGATAA+AGG + tig0023878:9844-9863 Msa1412260:intron 15.0%
!!! TTCAAATCATATTTGAATTT+TGG - tig0023878:9932-9951 None:intergenic 15.0%
!!! TTTTTTTTTCCAATTATTGT+TGG + tig0023878:9958-9977 Msa1412260:intron 15.0%
!! TTGAAAATTATTATTGAACT+GGG - tig0023878:13478-13497 None:intergenic 15.0%
!! TTTGAAAATTATTATTGAAC+TGG - tig0023878:13479-13498 None:intergenic 15.0%
!!! TCAATAATAATTTTCAAAGA+CGG + tig0023878:13481-13500 Msa1412260:CDS 15.0%
!!! TTCATTATTGATGATTTGTT+TGG + tig0023878:5295-5314 Msa1412260:intron 20.0%
!!! TCATTATTGATGATTTGTTT+GGG + tig0023878:5296-5315 Msa1412260:intron 20.0%
!!! TATTTTTCTTGGTAGTAAAA+TGG + tig0023878:5625-5644 Msa1412260:intron 20.0%
!! TGTCAAATAGAAAACAAATT+TGG - tig0023878:5878-5897 None:intergenic 20.0%
!!! ACATTAGTTTGTATTTGTAA+TGG + tig0023878:6627-6646 Msa1412260:intron 20.0%
!! ATAGAAAATAAATACCAACA+AGG - tig0023878:6711-6730 None:intergenic 20.0%
!! TATGTAATTAACTATTGAAG+AGG - tig0023878:6802-6821 None:intergenic 20.0%
!! TTCAATAGTTAATTACATAC+TGG + tig0023878:6803-6822 Msa1412260:intron 20.0%
!!! AAAGTTTCTTTTAAATGTTC+TGG + tig0023878:6849-6868 Msa1412260:intron 20.0%
!! TAGAATTTGTATGTATTTGA+TGG - tig0023878:6962-6981 None:intergenic 20.0%
!! AACAAGTAAAGTAAACAAAA+CGG - tig0023878:7472-7491 None:intergenic 20.0%
!!! ATGCTGTTCTAAAATAAAAA+TGG + tig0023878:7583-7602 Msa1412260:intron 20.0%
!!! TTTTGTGATTTTTGTATACT+TGG + tig0023878:7737-7756 Msa1412260:intron 20.0%
!!! TTTGTGATTTTTGTATACTT+GGG + tig0023878:7738-7757 Msa1412260:intron 20.0%
!!! GATTTCATGATATTGATTAT+TGG + tig0023878:7820-7839 Msa1412260:intron 20.0%
!! TAATTATTATTAGAAGTTGC+TGG + tig0023878:7864-7883 Msa1412260:intron 20.0%
!!! AATTTCTTTTTATGTTTTGC+TGG + tig0023878:8046-8065 Msa1412260:intron 20.0%
!!! CTTTTTTAAACAGTAATTGT+AGG - tig0023878:8189-8208 None:intergenic 20.0%
!! ATACTTAAACAAATTATGAC+TGG + tig0023878:8213-8232 Msa1412260:intron 20.0%
!! TACTTAAACAAATTATGACT+GGG + tig0023878:8214-8233 Msa1412260:intron 20.0%
!! TTTAAAAACCACAAGTATTA+AGG - tig0023878:8516-8535 None:intergenic 20.0%
!! AGATGATTAATTAGAGATAT+GGG - tig0023878:8596-8615 None:intergenic 20.0%
!! AAGATGATTAATTAGAGATA+TGG - tig0023878:8597-8616 None:intergenic 20.0%
!! TCCATACAATGATAATTAAA+TGG + tig0023878:8625-8644 Msa1412260:intron 20.0%
!! ACCATTTAATTATCATTGTA+TGG - tig0023878:8629-8648 None:intergenic 20.0%
!!! TGTGTCATTAATTTCATTTT+CGG - tig0023878:8711-8730 None:intergenic 20.0%
!! AAAATGAAATTAATGACACA+TGG + tig0023878:8711-8730 Msa1412260:intron 20.0%
!! GTCCTTTAAATTTAGATTTA+CGG - tig0023878:8740-8759 None:intergenic 20.0%
!! ATTGAAATAAACTATTGTGA+TGG + tig0023878:9106-9125 Msa1412260:intron 20.0%
!!! AAATATTTTCACAAAGCAAA+CGG + tig0023878:9296-9315 Msa1412260:intron 20.0%
!! TCATTTAAGTATTAAAAGAG+AGG - tig0023878:9376-9395 None:intergenic 20.0%
!!! CGTTTTTTAATACAGTTTAT+TGG - tig0023878:9482-9501 None:intergenic 20.0%
!!! TTTAAAAACGTTTACACTTT+TGG + tig0023878:9574-9593 Msa1412260:intron 20.0%
!!! TAATTTTGATGTTACTTTGA+TGG + tig0023878:9690-9709 Msa1412260:intron 20.0%
!! ATGTAATTTACCTTTATGAA+TGG + tig0023878:9770-9789 Msa1412260:intron 20.0%
!! AGAAAATTACCAACAATAAT+TGG - tig0023878:9970-9989 None:intergenic 20.0%
!!! TTTTTTCTCAAGTTTCTTTT+TGG - tig0023878:10669-10688 None:intergenic 20.0%
!!! GTTTTAGAATATCAATTTCA+GGG - tig0023878:11301-11320 None:intergenic 20.0%
!! CAAAACATTTCAGTTTATAA+TGG + tig0023878:11359-11378 Msa1412260:CDS 20.0%
!!! TTTTTTGAATATCAGTTTCA+TGG - tig0023878:11397-11416 None:intergenic 20.0%
!! CTAAACATATTAGTAATGAT+AGG + tig0023878:11831-11850 Msa1412260:CDS 20.0%
!!! TGAATTTAGGCATATTTTTT+CGG - tig0023878:12156-12175 None:intergenic 20.0%
!!! TTTTTATCTTCAACATATAG+AGG - tig0023878:12652-12671 None:intergenic 20.0%
! ATGGAATTACTTCTCAATTA+GGG + tig0023878:5150-5169 Msa1412260:five_prime_UTR 25.0%
! GAACAGTATTAAGAGTAAAA+TGG - tig0023878:5220-5239 None:intergenic 25.0%
! ACGAAATGGATAATAATTGA+AGG - tig0023878:5271-5290 None:intergenic 25.0%
! CAATAATGAAGAAAACGAAA+TGG - tig0023878:5285-5304 None:intergenic 25.0%
! TGGTAGTAAAATGGTAAAAT+TGG + tig0023878:5634-5653 Msa1412260:intron 25.0%
! GGTAGTAAAATGGTAAAATT+GGG + tig0023878:5635-5654 Msa1412260:intron 25.0%
! GTAGTAAAATGGTAAAATTG+GGG + tig0023878:5636-5655 Msa1412260:intron 25.0%
! AAACCAAACGTTAAAAAATC+TGG + tig0023878:5925-5944 Msa1412260:CDS 25.0%
!!! TGAAGACTTTTTTCTTTTCT+AGG + tig0023878:6014-6033 Msa1412260:intron 25.0%
!!! GAAGACTTTTTTCTTTTCTA+GGG + tig0023878:6015-6034 Msa1412260:intron 25.0%
! AAGAACTAACTATTGAAAAC+TGG - tig0023878:6295-6314 None:intergenic 25.0%
!! TAAAGATAGAAAAGGTATAG+AGG - tig0023878:7296-7315 None:intergenic 25.0%
! AAGAAAGGTAAAGATAGAAA+AGG - tig0023878:7304-7323 None:intergenic 25.0%
! GATAACAAACAGAAAAAGAA+AGG - tig0023878:7319-7338 None:intergenic 25.0%
! GAATGGATCTTTAAATTTGA+TGG - tig0023878:7353-7372 None:intergenic 25.0%
! GTAATGAATAGTGATAAGAA+TGG - tig0023878:7370-7389 None:intergenic 25.0%
! AATTGTGATGTCATAGAATA+GGG - tig0023878:7392-7411 None:intergenic 25.0%
! TAATTGTGATGTCATAGAAT+AGG - tig0023878:7393-7412 None:intergenic 25.0%
!!! ATAAAATTCTAGGATGATAC+TGG - tig0023878:7444-7463 None:intergenic 25.0%
!! AGTATCATCCTAGAATTTTA+TGG + tig0023878:7443-7462 Msa1412260:intron 25.0%
! TTGTTGTAAAGAAAGAATCA+TGG + tig0023878:7487-7506 Msa1412260:intron 25.0%
! TTGTAAGTATTTCACGTTAT+AGG + tig0023878:7671-7690 Msa1412260:intron 25.0%
! TGTAAGTATTTCACGTTATA+GGG + tig0023878:7672-7691 Msa1412260:intron 25.0%
! GGATTAAAGAAGTAAAGATT+CGG + tig0023878:7987-8006 Msa1412260:CDS 25.0%
!! CTTAATAAAAACCTCCTTTT+TGG - tig0023878:8098-8117 None:intergenic 25.0%
! TTGTCAATCTTTCAACAATT+TGG - tig0023878:8457-8476 None:intergenic 25.0%
!!! CTTGTCATTTTGATAGTTTA+AGG + tig0023878:8551-8570 Msa1412260:intron 25.0%
! AAAGTTTGAAGATGAATTTG+TGG + tig0023878:8652-8671 Msa1412260:intron 25.0%
! GCTAAACATGAAAAATAAAG+CGG + tig0023878:8835-8854 Msa1412260:intron 25.0%
! CTAAACATGAAAAATAAAGC+GGG + tig0023878:8836-8855 Msa1412260:intron 25.0%
! TAAACATGAAAAATAAAGCG+GGG + tig0023878:8837-8856 Msa1412260:intron 25.0%
! TAGGTGATTATATATTCTCT+TGG - tig0023878:8876-8895 None:intergenic 25.0%
!! AGCTAAAAACAATTCAAGTT+AGG + tig0023878:8920-8939 Msa1412260:intron 25.0%
!! AATATTTTCACAAAGCAAAC+GGG + tig0023878:9297-9316 Msa1412260:intron 25.0%
!!! TTATTTTTTTTCGATCGCAT+AGG - tig0023878:9324-9343 None:intergenic 25.0%
! ATGCGATCGAAAAAAAATAA+AGG + tig0023878:9324-9343 Msa1412260:intron 25.0%
! AGATGTTAAATTGATGAAGT+GGG + tig0023878:9400-9419 Msa1412260:intron 25.0%
!!! TTCAGTTTTATCTAAGATTG+TGG - tig0023878:9659-9678 None:intergenic 25.0%
!!! AGAATCACTAGATTTGTTTT+GGG - tig0023878:9888-9907 None:intergenic 25.0%
!!! AAGAATCACTAGATTTGTTT+TGG - tig0023878:9889-9908 None:intergenic 25.0%
!! AACATAAGCATGCTATTTAA+TGG + tig0023878:10114-10133 Msa1412260:intron 25.0%
!! ACATAAGCATGCTATTTAAT+GGG + tig0023878:10115-10134 Msa1412260:intron 25.0%
! GTGAATAATTTCGTTATTCT+TGG + tig0023878:10186-10205 Msa1412260:intron 25.0%
! AAAGTTGAAATACAAAGAAG+CGG - tig0023878:10389-10408 None:intergenic 25.0%
!!! GGTTTTAGAATATCAATTTC+AGG - tig0023878:11302-11321 None:intergenic 25.0%
!!! GAATTTAGGCATATTTTTTC+GGG - tig0023878:12155-12174 None:intergenic 25.0%
!! TTTTCATCTTCAACAAATAG+AGG - tig0023878:12334-12353 None:intergenic 25.0%
!! AGCATAATGAGAAATTTGTT+TGG + tig0023878:12622-12641 Msa1412260:CDS 25.0%
!!! ACCTGATCATTTTTCTTTAA+TGG - tig0023878:12733-12752 None:intergenic 25.0%
! GAAACTAAAACGTTAAACAA+TGG + tig0023878:12796-12815 Msa1412260:CDS 25.0%
!! AACATAATGATGAGTTTGTT+TGG + tig0023878:12946-12965 Msa1412260:CDS 25.0%
! TTTAACGTTACAGTTTGAAA+TGG - tig0023878:13117-13136 None:intergenic 25.0%
!! GTGAATCTTTTATGAATTCT+TGG + tig0023878:13163-13182 Msa1412260:CDS 25.0%
! TAAATGCAAATTCTAAGCAT+GGG - tig0023878:13194-13213 None:intergenic 25.0%
! TTAAATGCAAATTCTAAGCA+TGG - tig0023878:13195-13214 None:intergenic 25.0%
!!! CGATTATTGGTTTTTTGTGA+GGG - tig0023878:5105-5124 None:intergenic 30.0%
CCTCACAAAAAACCAATAAT+CGG + tig0023878:5103-5122 Msa1412260:five_prime_UTR 30.0%
CTAATTGAGAAGTAATTCCA+TGG - tig0023878:5151-5170 None:intergenic 30.0%
CATGGAATTACTTCTCAATT+AGG + tig0023878:5149-5168 Msa1412260:five_prime_UTR 30.0%
!! TGGAAACTAGTCTTGAAATT+AGG - tig0023878:5200-5219 None:intergenic 30.0%
TGGATGAAGAAGTAAATTGA+TGG + tig0023878:5323-5342 Msa1412260:intron 30.0%
ATAGAAATGAATCTAGACAC+AGG - tig0023878:5384-5403 None:intergenic 30.0%
TTTCTTGTTCAAATATGGTG+AGG + tig0023878:5497-5516 Msa1412260:intron 30.0%
TAAATTAAACGTGTCAGTGT+CGG + tig0023878:5737-5756 Msa1412260:intron 30.0%
! AGGTTAGAATACATGTTTTC+TGG + tig0023878:5786-5805 Msa1412260:intron 30.0%
!! AATACATGTTTTCTGGTAGA+GGG + tig0023878:5793-5812 Msa1412260:intron 30.0%
!! ATAAGCTGCCTTTTTGAAAA+TGG + tig0023878:5900-5919 Msa1412260:exon 30.0%
!! TAAGCTGCCTTTTTGAAAAT+GGG + tig0023878:5901-5920 Msa1412260:exon 30.0%
! TGGTTTTCCCATTTTCAAAA+AGG - tig0023878:5911-5930 None:intergenic 30.0%
ACTTTGCATGTAGACTTAAA+AGG - tig0023878:6379-6398 None:intergenic 30.0%
!! ATGCAAAGTTCTAAAGTTTC+TGG + tig0023878:6390-6409 Msa1412260:intron 30.0%
! ATGTTCACGACTTTAACTTA+TGG + tig0023878:6494-6513 Msa1412260:intron 30.0%
!!! TTTTTTTCTTCCCATGTGTA+TGG + tig0023878:6540-6559 Msa1412260:intron 30.0%
TGTCAAAAGTTGTCCTAAAT+CGG + tig0023878:6565-6584 Msa1412260:intron 30.0%
AATACAAACTAATGTGAGCA+TGG - tig0023878:6622-6641 None:intergenic 30.0%
TATTGATATGCCTGAAAAGT+TGG - tig0023878:6748-6767 None:intergenic 30.0%
ACGACATCTTGAAACTATAA+AGG + tig0023878:7000-7019 Msa1412260:CDS 30.0%
! TATAAGTTTAGAACTGTGTC+TGG + tig0023878:7411-7430 Msa1412260:intron 30.0%
! ATCATCCTAGAATTTTATGG+CGG + tig0023878:7446-7465 Msa1412260:intron 30.0%
TCATTGTGTTTGTACTTACA+GGG - tig0023878:7524-7543 None:intergenic 30.0%
TTCATTGTGTTTGTACTTAC+AGG - tig0023878:7525-7544 None:intergenic 30.0%
TAAAAATTAGGCCTTAAGCT+GGG - tig0023878:7613-7632 None:intergenic 30.0%
ATAAAAATTAGGCCTTAAGC+TGG - tig0023878:7614-7633 None:intergenic 30.0%
! CTTAAGGCCTAATTTTTATG+TGG + tig0023878:7615-7634 Msa1412260:intron 30.0%
TTAGTGCAATTCTAATGCAA+AGG + tig0023878:7771-7790 Msa1412260:intron 30.0%
!!! TTTTAGTTTTGCTATGCTCT+AGG + tig0023878:7922-7941 Msa1412260:intron 30.0%
TTTACTTCTTTAATCCATCC+AGG - tig0023878:7983-8002 None:intergenic 30.0%
AAGTGGCATAAAGAAAGATT+GGG + tig0023878:8018-8037 Msa1412260:CDS 30.0%
CTGGATCAATATAAAACTGT+TGG - tig0023878:8248-8267 None:intergenic 30.0%
! TTTTATATTGATCCAGTGAG+TGG + tig0023878:8252-8271 Msa1412260:CDS 30.0%
ATATGTATTCCATTCCAAGA+AGG + tig0023878:8275-8294 Msa1412260:CDS 30.0%
TTGTCTTCTACTTGGTTTAA+TGG - tig0023878:8343-8362 None:intergenic 30.0%
TCTTGATATTGTCTTCTACT+TGG - tig0023878:8351-8370 None:intergenic 30.0%
AAAAGCAGCAATAATGAGAT+AGG - tig0023878:8411-8430 None:intergenic 30.0%
!!! TCGGAAGAAAGAAGTTTTTT+CGG - tig0023878:8692-8711 None:intergenic 30.0%
ATGAAATTAATGACACATGG+TGG + tig0023878:8714-8733 Msa1412260:intron 30.0%
GGCCGTAAATCTAAATTTAA+AGG + tig0023878:8735-8754 Msa1412260:intron 30.0%
TTGTATATGAGCAAGTTAGA+AGG + tig0023878:8797-8816 Msa1412260:intron 30.0%
TGTATATGAGCAAGTTAGAA+GGG + tig0023878:8798-8817 Msa1412260:intron 30.0%
AAACATGAAAAATAAAGCGG+GGG + tig0023878:8838-8857 Msa1412260:intron 30.0%
TTATCCATGACTGATAGTAT+AGG - tig0023878:8895-8914 None:intergenic 30.0%
GGAATAAATACCAGTAGTTA+CGG + tig0023878:8941-8960 Msa1412260:intron 30.0%
AGAAGATGAAATGCTAGTTA+GGG + tig0023878:9131-9150 Msa1412260:intron 30.0%
!!! GAACAATAGTGTGCATTTTT+TGG - tig0023878:9209-9228 None:intergenic 30.0%
! ATATTTTCACAAAGCAAACG+GGG + tig0023878:9298-9317 Msa1412260:intron 30.0%
GAGATGTTAAATTGATGAAG+TGG + tig0023878:9399-9418 Msa1412260:intron 30.0%
TGATGAAGTGGGTATATAAT+AGG + tig0023878:9411-9430 Msa1412260:intron 30.0%
ATATCAAACAAGCTAATCCT+TGG + tig0023878:9441-9460 Msa1412260:intron 30.0%
!!! CAGTTTATTGGGCATTTTTT+GGG - tig0023878:9470-9489 None:intergenic 30.0%
!!! ACAGTTTATTGGGCATTTTT+TGG - tig0023878:9471-9490 None:intergenic 30.0%
AATATGTAACAGAAGTGGAT+GGG - tig0023878:9614-9633 None:intergenic 30.0%
AAATATGTAACAGAAGTGGA+TGG - tig0023878:9615-9634 None:intergenic 30.0%
ACACAAATATGTAACAGAAG+TGG - tig0023878:9619-9638 None:intergenic 30.0%
TCATACTTGACCATTCATAA+AGG - tig0023878:9783-9802 None:intergenic 30.0%
CATGGAAAGATAATGAGATT+TGG + tig0023878:9817-9836 Msa1412260:intron 30.0%
! TGTCCTTCACAAATTTTCAT+TGG + tig0023878:10077-10096 Msa1412260:intron 30.0%
ATGCCAATGAAAATTTGTGA+AGG - tig0023878:10083-10102 None:intergenic 30.0%
! CCAACAAAAATCTTTTGCAT+GGG - tig0023878:10274-10293 None:intergenic 30.0%
! ACCAACAAAAATCTTTTGCA+TGG - tig0023878:10275-10294 None:intergenic 30.0%
CATATTCTTCATCCTTAAGT+TGG - tig0023878:10345-10364 None:intergenic 30.0%
AAGTTGAAATACAAAGAAGC+GGG - tig0023878:10388-10407 None:intergenic 30.0%
! TTTCCTTGAGTTGTTAACAT+CGG - tig0023878:10451-10470 None:intergenic 30.0%
ATGTTAACAACTCAAGGAAA+GGG + tig0023878:10451-10470 Msa1412260:CDS 30.0%
! GTTACTGTGATTCATTTTCA+AGG - tig0023878:10532-10551 None:intergenic 30.0%
!! CATCATTTTTGGATATGCTA+TGG - tig0023878:10554-10573 None:intergenic 30.0%
TGACAATGTGATTAATGATG+AGG + tig0023878:10632-10651 Msa1412260:CDS 30.0%
AGAAAAAACAGAACTACTCT+AGG + tig0023878:10681-10700 Msa1412260:CDS 30.0%
TAAATCATCTCAGCATTTCA+AGG + tig0023878:10719-10738 Msa1412260:CDS 30.0%
AAATCATCTCAGCATTTCAA+GGG + tig0023878:10720-10739 Msa1412260:CDS 30.0%
!!! TCTTTCTGAAGTAGTTTTCA+AGG + tig0023878:10788-10807 Msa1412260:CDS 30.0%
! TCTTCTTACTGGATTTGTTT+GGG - tig0023878:10875-10894 None:intergenic 30.0%
! TTCTTCTTACTGGATTTGTT+TGG - tig0023878:10876-10895 None:intergenic 30.0%
TTATCAAGAGGATTATCAAC+TGG - tig0023878:11263-11282 None:intergenic 30.0%
!! GTTGATAATCCTCTTGATAA+TGG + tig0023878:11263-11282 Msa1412260:CDS 30.0%
TTGAATATCAGTTTCATGGA+CGG - tig0023878:11393-11412 None:intergenic 30.0%
AAAATCCAAGAGAAAGAAAG+AGG + tig0023878:11514-11533 Msa1412260:CDS 30.0%
!! GCAACTGTACTTTTAACTAA+TGG + tig0023878:11650-11669 Msa1412260:CDS 30.0%
!!! ATGAACTTTTTTATCCATGC+TGG - tig0023878:12032-12051 None:intergenic 30.0%
!!! ATTACGCTCTTTCTTGTTTT+CGG - tig0023878:12071-12090 None:intergenic 30.0%
! AAGAAAGAGCGTAATATGAA+TGG + tig0023878:12076-12095 Msa1412260:CDS 30.0%
AATATGCCTAAATTCACCAA+TGG + tig0023878:12160-12179 Msa1412260:CDS 30.0%
!!! AATTTAGACACACTTTTTCC+AGG - tig0023878:12253-12272 None:intergenic 30.0%
! AACATGATGAGGAATTTGTT+TGG + tig0023878:12304-12323 Msa1412260:CDS 30.0%
!!! ACCTGGTCATTTTTCTTTAA+TGG - tig0023878:12415-12434 None:intergenic 30.0%
ATGATTATGAGATTCTCGAA+TGG - tig0023878:12596-12615 None:intergenic 30.0%
GCCATTAAAGAAAAATGATC+AGG + tig0023878:12729-12748 Msa1412260:CDS 30.0%
!!! AACGTTTTAGTTTCAAAACC+TGG - tig0023878:12790-12809 None:intergenic 30.0%
AAAACGTTAAACAATGGCAA+TGG + tig0023878:12802-12821 Msa1412260:CDS 30.0%
!!! TAGACACATTTTTTCCAGAT+GGG - tig0023878:12891-12910 None:intergenic 30.0%
!!! TTAGACACATTTTTTCCAGA+TGG - tig0023878:12892-12911 None:intergenic 30.0%
! TTTTCATCTTCAACATACAG+AGG - tig0023878:12976-12995 None:intergenic 30.0%
! TTTGCATTTAAGACTCTTAC+AGG + tig0023878:13204-13223 Msa1412260:CDS 30.0%
AGGAAAATTTAGCAGTTCAA+GGG + tig0023878:13241-13260 Msa1412260:CDS 30.0%
GAAATCACTTTGTGAAAAAC+TGG - tig0023878:13337-13356 None:intergenic 30.0%
! TTTTTGTGAGGGAGAAGAAA+AGG - tig0023878:5094-5113 None:intergenic 35.0%
!!! CCGATTATTGGTTTTTTGTG+AGG - tig0023878:5106-5125 None:intergenic 35.0%
!! TGATGATTTGTTTGGGAAAG+TGG + tig0023878:5303-5322 Msa1412260:intron 35.0%
AGGGTCAACTTAGTCAAAAT+CGG - tig0023878:5554-5573 None:intergenic 35.0%
AAAAACTTGTCACTCCATGA+GGG - tig0023878:5581-5600 None:intergenic 35.0%
AAAAAACTTGTCACTCCATG+AGG - tig0023878:5582-5601 None:intergenic 35.0%
!!! CATGGAGTGACAAGTTTTTT+AGG + tig0023878:5582-5601 Msa1412260:intron 35.0%
AAATTAAACGTGTCAGTGTC+GGG + tig0023878:5738-5757 Msa1412260:intron 35.0%
TGTTTGTGTCAATGCTTCAT+AGG + tig0023878:5766-5785 Msa1412260:intron 35.0%
!! GAATACATGTTTTCTGGTAG+AGG + tig0023878:5792-5811 Msa1412260:intron 35.0%
TGGTAGAGGGAATGAATTAT+TGG + tig0023878:5806-5825 Msa1412260:intron 35.0%
!!! CCTCCAGATTTTTTAACGTT+TGG - tig0023878:5931-5950 None:intergenic 35.0%
CCAAACGTTAAAAAATCTGG+AGG + tig0023878:5928-5947 Msa1412260:CDS 35.0%
!!! GACTTTTTTCTTTTCTAGGG+AGG + tig0023878:6018-6037 Msa1412260:intron 35.0%
ATTAGTGAAATGGATCTCTG+GGG - tig0023878:6350-6369 None:intergenic 35.0%
CATTAGTGAAATGGATCTCT+GGG - tig0023878:6351-6370 None:intergenic 35.0%
AAGGTCAACCATTAGTGAAA+TGG - tig0023878:6360-6379 None:intergenic 35.0%
! TTTTGACAGTCCATACACAT+GGG - tig0023878:6553-6572 None:intergenic 35.0%
! TGTGATTTTGTACTCCTTGT+TGG + tig0023878:6694-6713 Msa1412260:intron 35.0%
! CTAATGTTGACCAACTTTTC+AGG + tig0023878:6735-6754 Msa1412260:intron 35.0%
GATCAATGTAACACTGTAAC+AGG - tig0023878:6940-6959 None:intergenic 35.0%
TGCTCTTCCAATAAGAAGAA+AGG + tig0023878:7031-7050 Msa1412260:CDS 35.0%
TAACATGCATTCTCCAAACA+AGG + tig0023878:7186-7205 Msa1412260:CDS 35.0%
AACATGCATTCTCCAAACAA+GGG + tig0023878:7187-7206 Msa1412260:CDS 35.0%
! AGGCCTAATTTTTATGTGGT+TGG + tig0023878:7619-7638 Msa1412260:intron 35.0%
! GGCCTAATTTTTATGTGGTT+GGG + tig0023878:7620-7639 Msa1412260:intron 35.0%
GACCCAACCACATAAAAATT+AGG - tig0023878:7625-7644 None:intergenic 35.0%
GAAGTGGCATAAAGAAAGAT+TGG + tig0023878:8017-8036 Msa1412260:CDS 35.0%
AAAACGTTGTACATCCTTCT+TGG - tig0023878:8292-8311 None:intergenic 35.0%
! GTACAACGTTTTCTCAAATC+TGG + tig0023878:8300-8319 Msa1412260:CDS 35.0%
AAGATTGACAAATTTGCAGC+TGG + tig0023878:8466-8485 Msa1412260:intron 35.0%
AGATTGACAAATTTGCAGCT+GGG + tig0023878:8467-8486 Msa1412260:intron 35.0%
CACAAGTATTAAGGATCAGA+GGG - tig0023878:8507-8526 None:intergenic 35.0%
!!! CGGAAGAAAGAAGTTTTTTC+GGG - tig0023878:8691-8710 None:intergenic 35.0%
GTATATGAGCAAGTTAGAAG+GGG + tig0023878:8799-8818 Msa1412260:intron 35.0%
ATCACCTATACTATCAGTCA+TGG + tig0023878:8888-8907 Msa1412260:intron 35.0%
AATATGCAAACCGTAACTAC+TGG - tig0023878:8954-8973 None:intergenic 35.0%
TACGGTTTGCATATTAGTGT+TGG + tig0023878:8959-8978 Msa1412260:intron 35.0%
! TTGGAAAGCTTTTGTTCTGA+GGG + tig0023878:8978-8997 Msa1412260:intron 35.0%
GAGAAGATGAAATGCTAGTT+AGG + tig0023878:9130-9149 Msa1412260:intron 35.0%
! AGTTAGGGATGATGCATTTT+TGG + tig0023878:9146-9165 Msa1412260:intron 35.0%
ATATGTAACAGAAGTGGATG+GGG - tig0023878:9613-9632 None:intergenic 35.0%
!! GATGTTACTTTGATGGATTG+TGG + tig0023878:9697-9716 Msa1412260:intron 35.0%
!! GTGGATTCTGGCTATTATTT+TGG + tig0023878:9716-9735 Msa1412260:intron 35.0%
! GAATGGTCAAGTATGACTTT+TGG + tig0023878:9787-9806 Msa1412260:intron 35.0%
GTGAAGGACATTATTCAGTT+AGG - tig0023878:10067-10086 None:intergenic 35.0%
! CCCATGCAAAAGATTTTTGT+TGG + tig0023878:10271-10290 Msa1412260:CDS 35.0%
! TAAGCTTTCAACTGGTTCTT+TGG - tig0023878:10421-10440 None:intergenic 35.0%
! TTCCTTGAGTTGTTAACATC+GGG - tig0023878:10450-10469 None:intergenic 35.0%
GATGTTAACAACTCAAGGAA+AGG + tig0023878:10450-10469 Msa1412260:CDS 35.0%
! GCTCACATTGACATCATTTT+TGG - tig0023878:10565-10584 None:intergenic 35.0%
!! TTATCTCTTTCTAGTTGACG+TGG - tig0023878:10819-10838 None:intergenic 35.0%
!! TTTGGGTTGGTATGAAATTC+TGG - tig0023878:10858-10877 None:intergenic 35.0%
!!! ACATTTGGAAGCTTTTTCAC+AGG - tig0023878:10970-10989 None:intergenic 35.0%
! CTTCCAAATGTAAAAGCACA+AGG + tig0023878:10979-10998 Msa1412260:CDS 35.0%
! AGACCTTGTGCTTTTACATT+TGG - tig0023878:10985-11004 None:intergenic 35.0%
TGATTGCATAATCCAAGCTT+GGG - tig0023878:11217-11236 None:intergenic 35.0%
TTGATTGCATAATCCAAGCT+TGG - tig0023878:11218-11237 None:intergenic 35.0%
TTATGCAATCAATACCCTCA+CGG + tig0023878:11226-11245 Msa1412260:CDS 35.0%
TTGTTTGACAACGTTACTAG+AGG + tig0023878:11419-11438 Msa1412260:CDS 35.0%
TTTGACCTCTTTCTTTCTCT+TGG - tig0023878:11522-11541 None:intergenic 35.0%
! ACTCAAGAGCTTTATCAGAA+GGG - tig0023878:11595-11614 None:intergenic 35.0%
! TACTCAAGAGCTTTATCAGA+AGG - tig0023878:11596-11615 None:intergenic 35.0%
! TTCTTTGCATGGTTTTCTAC+TGG - tig0023878:11621-11640 None:intergenic 35.0%
! GTTAAAAGTACAGTTGCAGT+GGG - tig0023878:11647-11666 None:intergenic 35.0%
! AGTTAAAAGTACAGTTGCAG+TGG - tig0023878:11648-11667 None:intergenic 35.0%
TGCCAAACAATGAGTTGTAT+GGG + tig0023878:11996-12015 Msa1412260:CDS 35.0%
AGTCTTCAAAGATACTGCTT+GGG + tig0023878:12101-12120 Msa1412260:CDS 35.0%
!!! AGGCATATTTTTTCGGGATA+AGG - tig0023878:12149-12168 None:intergenic 35.0%
GATTCTCCATTGGTGAATTT+AGG - tig0023878:12169-12188 None:intergenic 35.0%
AAGCAACATGATAAGGAATC+TGG + tig0023878:12201-12220 Msa1412260:CDS 35.0%
ATGATTGTGAGATTCTTGAG+TGG - tig0023878:12278-12297 None:intergenic 35.0%
ATCATGAAGAGAACATGATG+AGG + tig0023878:12293-12312 Msa1412260:CDS 35.0%
! TCTAGAATGATGCAGAAGTT+GGG - tig0023878:12362-12381 None:intergenic 35.0%
!! TTCTAGAATGATGCAGAAGT+TGG - tig0023878:12363-12382 None:intergenic 35.0%
GCCATTAAAGAAAAATGACC+AGG + tig0023878:12411-12430 Msa1412260:CDS 35.0%
! TACGCTTTAGTTTCAAAACC+CGG - tig0023878:12472-12491 None:intergenic 35.0%
GAAACTAAAGCGTATAACCA+TGG + tig0023878:12478-12497 Msa1412260:CDS 35.0%
AGAGAATCTTGTAGTCATGA+AGG + tig0023878:12505-12524 Msa1412260:CDS 35.0%
! AAAAATGATCAGGTTGCTGA+GGG + tig0023878:12739-12758 Msa1412260:CDS 35.0%
!!! GTTTTAGTTTCAAAACCTGG+AGG - tig0023878:12787-12806 None:intergenic 35.0%
!!! AGACACATTTTTTCCAGATG+GGG - tig0023878:12890-12909 None:intergenic 35.0%
AATGTGTCTAAATTAGCCAC+TGG + tig0023878:12901-12920 Msa1412260:CDS 35.0%
! TCTAGAATGATGCAGAAGTT+GGG - tig0023878:12362-12381 None:intergenic 35.0%
!! TTCTAGAATGATGCAGAAGT+TGG - tig0023878:12363-12382 None:intergenic 35.0%
!!! ACCTGGTCATTTTTCTTTAC+TGG - tig0023878:13057-13076 None:intergenic 35.0%
AAAAATGACCAGGTTGCTAA+GGG + tig0023878:13063-13082 Msa1412260:CDS 35.0%
TAAGGGTGAATTTGGTACAT+CGG + tig0023878:13080-13099 Msa1412260:CDS 35.0%
! AACGTTACAGTTTGAAATGG+CGG - tig0023878:13114-13133 None:intergenic 35.0%
! ACTGCTAAATTTTCCTCTAC+TGG - tig0023878:13237-13256 None:intergenic 35.0%
GAGGAAAATTTAGCAGTTCA+AGG + tig0023878:13240-13259 Msa1412260:CDS 35.0%
GGAAAATTTAGCAGTTCAAG+GGG + tig0023878:13242-13261 Msa1412260:CDS 35.0%
GAAAATTTAGCAGTTCAAGG+GGG + tig0023878:13243-13262 Msa1412260:CDS 35.0%
AAACTGGAAGATCCAAAATC+TGG - tig0023878:13321-13340 None:intergenic 35.0%
TTCTCATTTCACTTTGACAC+AGG + tig0023878:13354-13373 Msa1412260:CDS 35.0%
! AACTGGGAATATTGTTGTTG+CGG - tig0023878:13462-13481 None:intergenic 35.0%
GAATTGCAGGATCCGATTAT+TGG - tig0023878:5118-5137 None:intergenic 40.0%
TGGAGAAATGAACGAATTGC+AGG - tig0023878:5131-5150 None:intergenic 40.0%
GCAATTCGTTCATTTCTCCA+TGG + tig0023878:5131-5150 Msa1412260:five_prime_UTR 40.0%
ATCTAGACACAGGAAATGCA+TGG - tig0023878:5374-5393 None:intergenic 40.0%
!! TGAAGCATTGACACAAACAC+TGG - tig0023878:5765-5784 None:intergenic 40.0%
AATCTGGAGGAACCAACAAA+CGG + tig0023878:5941-5960 Msa1412260:CDS 40.0%
GTCATTGTCAATCCGTTTGT+TGG - tig0023878:5956-5975 None:intergenic 40.0%
AACCAAGTGACAAGTGAGAA+AGG - tig0023878:6069-6088 None:intergenic 40.0%
TTATATGCAGATCCCATAGC+CGG - tig0023878:6188-6207 None:intergenic 40.0%
TATGGGATCTGCATATAAGG+TGG + tig0023878:6190-6209 Msa1412260:intron 40.0%
TTAGTGAAATGGATCTCTGG+GGG - tig0023878:6349-6368 None:intergenic 40.0%
CCATTAGTGAAATGGATCTC+TGG - tig0023878:6352-6371 None:intergenic 40.0%
CCAGAGATCCATTTCACTAA+TGG + tig0023878:6349-6368 Msa1412260:intron 40.0%
! CTTTTGACAGTCCATACACA+TGG - tig0023878:6554-6573 None:intergenic 40.0%
!! AAAATCCAGCTCACCGATTT+AGG - tig0023878:6581-6600 None:intergenic 40.0%
! TAAATCGGTGAGCTGGATTT+TGG + tig0023878:6580-6599 Msa1412260:intron 40.0%
! AAATCGGTGAGCTGGATTTT+GGG + tig0023878:6581-6600 Msa1412260:intron 40.0%
CAAATTCTACTCCAAACCTG+AGG + tig0023878:6973-6992 Msa1412260:CDS 40.0%
ATGTCGTAATACCTCAGGTT+TGG - tig0023878:6987-7006 None:intergenic 40.0%
TCAAGATGTCGTAATACCTC+AGG - tig0023878:6992-7011 None:intergenic 40.0%
GCTAGTGCCTTTCTTCTTAT+TGG - tig0023878:7041-7060 None:intergenic 40.0%
TAGCAAGCATTCTCCAAACA+AGG + tig0023878:7057-7076 Msa1412260:CDS 40.0%
! TTTTTCTCTTCCTCCTTGCT+TGG - tig0023878:7118-7137 None:intergenic 40.0%
ACATGCATTCTCCAAACAAG+GGG + tig0023878:7188-7207 Msa1412260:CDS 40.0%
!! ATAGGGTGTTTTTGTGTGTC+AGG + tig0023878:7689-7708 Msa1412260:intron 40.0%
ACTTCTTTAATCCATCCAGG+TGG - tig0023878:7980-7999 None:intergenic 40.0%
GATATCACGCTATAAACCAC+AGG - tig0023878:8167-8186 None:intergenic 40.0%
TGGAATACATATCCACTCAC+TGG - tig0023878:8267-8286 None:intergenic 40.0%
GTTGTACATCCTTCTTGGAA+TGG - tig0023878:8287-8306 None:intergenic 40.0%
ACTTGGTTTAATGGCACACT+TGG - tig0023878:8334-8353 None:intergenic 40.0%
CCACAAGTATTAAGGATCAG+AGG - tig0023878:8508-8527 None:intergenic 40.0%
CCTCTGATCCTTAATACTTG+TGG + tig0023878:8505-8524 Msa1412260:intron 40.0%
!!! GAAAGAAGTTTTTTCGGGAG+TGG - tig0023878:8686-8705 None:intergenic 40.0%
! CAAGTCTTGTACTAACGTAC+TGG - tig0023878:8780-8799 None:intergenic 40.0%
! GTTGGAAAGCTTTTGTTCTG+AGG + tig0023878:8977-8996 Msa1412260:intron 40.0%
CGAAACTAGAGCAGCAAATT+AGG + tig0023878:9022-9041 Msa1412260:intron 40.0%
!! CTTTGATGGATTGTGGATTC+TGG + tig0023878:9704-9723 Msa1412260:intron 40.0%
!! ATGACTTTTGGTAGCAGACA+TGG + tig0023878:9799-9818 Msa1412260:intron 40.0%
! TAATTTTCTGCCCCACTTAG+TGG + tig0023878:9981-10000 Msa1412260:intron 40.0%
! AATTTTCTGCCCCACTTAGT+GGG + tig0023878:9982-10001 Msa1412260:intron 40.0%
!!! CTGCTTTGGTTTTTGTCTCT+TGG - tig0023878:10245-10264 None:intergenic 40.0%
CTTCAAGCTCAACCAACTTA+AGG + tig0023878:10330-10349 Msa1412260:intron 40.0%
GGCAATTCTAAGCTTTCAAC+TGG - tig0023878:10429-10448 None:intergenic 40.0%
ATGATGTCAATGTGAGCCAT+CGG + tig0023878:10568-10587 Msa1412260:CDS 40.0%
ACATTGTCAACCAACTTGAC+AGG - tig0023878:10621-10640 None:intergenic 40.0%
! CGTTTGGTTGCTCGATTTTT+GGG - tig0023878:10749-10768 None:intergenic 40.0%
! CTTACTGGATTTGTTTGGGT+TGG - tig0023878:10871-10890 None:intergenic 40.0%
!!! GGAAGCTTTTTCACAGGATA+TGG - tig0023878:10964-10983 None:intergenic 40.0%
AGCTGAATTGCAACTAAGTG+AGG + tig0023878:11016-11035 Msa1412260:CDS 40.0%
GCTGAATTGCAACTAAGTGA+GGG + tig0023878:11017-11036 Msa1412260:CDS 40.0%
AATTGCAACTAAGTGAGGGT+GGG + tig0023878:11021-11040 Msa1412260:CDS 40.0%
ACTCTCTATGTAATGGTGCA+TGG - tig0023878:11067-11086 None:intergenic 40.0%
TGCACCATTACATAGAGAGT+CGG + tig0023878:11067-11086 Msa1412260:CDS 40.0%
TTTCCCGACTCTCTATGTAA+TGG - tig0023878:11074-11093 None:intergenic 40.0%
ACAAGTGGAAAAACCTGAAG+TGG + tig0023878:11136-11155 Msa1412260:CDS 40.0%
GATTTCTCATCATCCACTTC+AGG - tig0023878:11152-11171 None:intergenic 40.0%
TATGCAATCAATACCCTCAC+GGG + tig0023878:11227-11246 Msa1412260:CDS 40.0%
TCAAGAGGATTATCAACTGG+TGG - tig0023878:11260-11279 None:intergenic 40.0%
GTAGAAGGTCCATTATCAAG+AGG - tig0023878:11275-11294 None:intergenic 40.0%
TCAATTTCAGGGACTGTAGA+AGG - tig0023878:11290-11309 None:intergenic 40.0%
!!! CTCTTGGATTTTGATTGCAC+CGG - tig0023878:11506-11525 None:intergenic 40.0%
CATCTAACCATCTCTATGGT+GGG + tig0023878:11675-11694 Msa1412260:CDS 40.0%
ATCTAACCATCTCTATGGTG+GGG + tig0023878:11676-11695 Msa1412260:CDS 40.0%
!! AGTTTGAAAGCAGAAGTGCT+AGG + tig0023878:11731-11750 Msa1412260:CDS 40.0%
GGAGAATCATCAAGAAAGTG+TGG + tig0023878:11752-11771 Msa1412260:CDS 40.0%
TGATACCCAAACTGTTCACA+AGG + tig0023878:11784-11803 Msa1412260:CDS 40.0%
CTGTTCCTTGTGAACAGTTT+GGG - tig0023878:11792-11811 None:intergenic 40.0%
TGTTCACAAGGAACAGCAAT+CGG + tig0023878:11796-11815 Msa1412260:CDS 40.0%
TTGAATGCAAATTCCAGGCA+TGG - tig0023878:11902-11921 None:intergenic 40.0%
GAGTCTTGAATGCAAATTCC+AGG - tig0023878:11907-11926 None:intergenic 40.0%
TTTGCATTCAAGACTCTCAC+TGG + tig0023878:11911-11930 Msa1412260:CDS 40.0%
AACTCAGCAGAAGAATCAAC+CGG - tig0023878:11944-11963 None:intergenic 40.0%
AAAGTTTCGACTCCTAGTGT+TGG + tig0023878:11968-11987 Msa1412260:CDS 40.0%
CTGCCAAACAATGAGTTGTA+TGG + tig0023878:11995-12014 Msa1412260:CDS 40.0%
CTCCCATACAACTCATTGTT+TGG - tig0023878:12001-12020 None:intergenic 40.0%
!!! GCTCTTTCTTGTTTTCGGAT+TGG - tig0023878:12066-12085 None:intergenic 40.0%
CAGTCTTCAAAGATACTGCT+TGG + tig0023878:12100-12119 Msa1412260:CDS 40.0%
AAAAATGACCAGGTTGCTGA+GGG + tig0023878:12421-12440 Msa1412260:CDS 40.0%
TACAAGATTCTCTGTTGCCA+TGG - tig0023878:12498-12517 None:intergenic 40.0%
GTCATGAAGGCAACAACATA+AGG + tig0023878:12518-12537 Msa1412260:CDS 40.0%
AGGCAACAACATAAGGAATC+TGG + tig0023878:12525-12544 Msa1412260:CDS 40.0%
!!! TGACGCATTTTTTCCAGATG+TGG - tig0023878:12572-12591 None:intergenic 40.0%
! TCTAGAACGATGCAGAAGTT+GGG - tig0023878:12680-12699 None:intergenic 40.0%
!! TTCTAGAACGATGCAGAAGT+TGG - tig0023878:12681-12700 None:intergenic 40.0%
! GAAAAATGATCAGGTTGCTG+AGG + tig0023878:12738-12757 Msa1412260:CDS 40.0%
TGAGGGTGAATTTGGTACAT+CGG + tig0023878:12756-12775 Msa1412260:CDS 40.0%
GGAGAATCTCTTAGTCATGA+AGG + tig0023878:12823-12842 Msa1412260:CDS 40.0%
GTGACTATGAAATTCTCCAG+TGG - tig0023878:12920-12939 None:intergenic 40.0%
GCCAGTAAAGAAAAATGACC+AGG + tig0023878:13053-13072 Msa1412260:CDS 40.0%
GAAAAATGACCAGGTTGCTA+AGG + tig0023878:13062-13081 Msa1412260:CDS 40.0%
GAACCTGTTAACTGTCATGA+TGG + tig0023878:13273-13292 Msa1412260:CDS 40.0%
! CTGTTAACTGTCATGATGGA+GGG + tig0023878:13277-13296 Msa1412260:CDS 40.0%
! TGTTAACTGTCATGATGGAG+GGG + tig0023878:13278-13297 Msa1412260:CDS 40.0%
TCATTTCACTTTGACACAGG+AGG + tig0023878:13357-13376 Msa1412260:CDS 40.0%
CATTTCACTTTGACACAGGA+GGG + tig0023878:13358-13377 Msa1412260:CDS 40.0%
AGTTGACCCTAATACCCTCA+TGG + tig0023878:5564-5583 Msa1412260:intron 45.0%
!! GTCACTCCATGAGGGTATTA+GGG - tig0023878:5573-5592 None:intergenic 45.0%
!! TGTCACTCCATGAGGGTATT+AGG - tig0023878:5574-5593 None:intergenic 45.0%
ATGTGTAGCCATGTAGGTGT+TGG - tig0023878:5666-5685 None:intergenic 45.0%
TGCCTTTCTCACTTGTCACT+TGG + tig0023878:6064-6083 Msa1412260:intron 45.0%
TGAATGGTTGCCTAATGGCT+GGG + tig0023878:6133-6152 Msa1412260:CDS 45.0%
ACTTCGATATCCCAGCCATT+AGG - tig0023878:6146-6165 None:intergenic 45.0%
GAAGTTAGAACCCGACAAAG+TGG + tig0023878:6161-6180 Msa1412260:CDS 45.0%
GGCTATGGGATCTGCATATA+AGG + tig0023878:6187-6206 Msa1412260:CDS 45.0%
CAAGCATTCTCCAAACAAGG+AGG + tig0023878:7060-7079 Msa1412260:CDS 45.0%
TGTTTCTCCTCCTCCTTGTT+TGG - tig0023878:7073-7092 None:intergenic 45.0%
! TGGAGAATGCTGCTTACTCT+TGG - tig0023878:7098-7117 None:intergenic 45.0%
TAAGCAGCATTCTCCAAGCA+AGG + tig0023878:7102-7121 Msa1412260:CDS 45.0%
TAACCAGCATTCTCCAAGCA+AGG + tig0023878:7147-7166 Msa1412260:CDS 45.0%
CATTTCTCTTCCTCCTTGCT+TGG - tig0023878:7163-7182 None:intergenic 45.0%
CATGCATTCTCCAAACAAGG+GGG + tig0023878:7189-7208 Msa1412260:CDS 45.0%
TGTTTCTCTTCCCCCTTGTT+TGG - tig0023878:7202-7221 None:intergenic 45.0%
ATGCATTCTCCAAGCAAGGA+CGG + tig0023878:7229-7248 Msa1412260:CDS 45.0%
! ATAGAGGTGCACACATTGCT+TGG - tig0023878:7280-7299 None:intergenic 45.0%
AACGGCCGCCATAAAATTCT+AGG - tig0023878:7454-7473 None:intergenic 45.0%
AAAATGGTCGTCCCAGCTTA+AGG + tig0023878:7599-7618 Msa1412260:intron 45.0%
! TTTGCTATGCTCTAGGTTGC+AGG + tig0023878:7929-7948 Msa1412260:intron 45.0%
! AAGATTCGGAAGCACAGAAG+TGG + tig0023878:8001-8020 Msa1412260:CDS 45.0%
CTGTCCTCTCTCTTCCAAAA+AGG + tig0023878:8081-8100 Msa1412260:intron 45.0%
TCCTCTCTCTTCCAAAAAGG+AGG + tig0023878:8084-8103 Msa1412260:intron 45.0%
!! ACCTCCTTTTTGGAAGAGAG+AGG - tig0023878:8088-8107 None:intergenic 45.0%
TAGTGAGTTGCAAATGCCTG+TGG + tig0023878:8148-8167 Msa1412260:intron 45.0%
!!! GTTTTTTCGGGAGTGGATGT+AGG - tig0023878:8679-8698 None:intergenic 45.0%
GTCTTGTACTAACGTACTGG+AGG - tig0023878:8777-8796 None:intergenic 45.0%
! AAGCCTTATCCCACTAAGTG+GGG - tig0023878:9994-10013 None:intergenic 45.0%
! CAAGCCTTATCCCACTAAGT+GGG - tig0023878:9995-10014 None:intergenic 45.0%
TGCCCGATGTTAACAACTCA+AGG + tig0023878:10445-10464 Msa1412260:CDS 45.0%
GAATGTGCCATCTCGAATGA+TGG + tig0023878:10482-10501 Msa1412260:CDS 45.0%
AGAGCAACCATCATTCGAGA+TGG - tig0023878:10492-10511 None:intergenic 45.0%
ATGGTTGCTCTTGATACCTC+AGG + tig0023878:10501-10520 Msa1412260:CDS 45.0%
TGGTTGCTCTTGATACCTCA+GGG + tig0023878:10502-10521 Msa1412260:CDS 45.0%
!! CATTTTCAAGGATTCCCCTG+AGG - tig0023878:10520-10539 None:intergenic 45.0%
!!! ATGTGAGCCATCGGTTTTCA+CGG + tig0023878:10577-10596 Msa1412260:CDS 45.0%
! TGGTGTTGAACCTGTCAAGT+TGG + tig0023878:10608-10627 Msa1412260:CDS 45.0%
!! AACTACTCTAGGCGCTGATA+TGG + tig0023878:10692-10711 Msa1412260:CDS 45.0%
! GCGTTTGGTTGCTCGATTTT+TGG - tig0023878:10750-10769 None:intergenic 45.0%
AATCGAGCAACCAAACGCAA+TGG + tig0023878:10752-10771 Msa1412260:CDS 45.0%
TTGCTTGTGTCCATTGCGTT+TGG - tig0023878:10765-10784 None:intergenic 45.0%
TCCAGTAAGAAGAAAGAGCC+CGG + tig0023878:10882-10901 Msa1412260:CDS 45.0%
GATATGGAGTTCATCAGCCT+GGG - tig0023878:10948-10967 None:intergenic 45.0%
GAATTGCAACTAAGTGAGGG+TGG + tig0023878:11020-11039 Msa1412260:CDS 45.0%
! TGGTCTGTAAGCTTGGTAAC+TGG - tig0023878:11047-11066 None:intergenic 45.0%
GCACCATTACATAGAGAGTC+GGG + tig0023878:11068-11087 Msa1412260:CDS 45.0%
TCTGCAGCAGGTATGATTCT+AGG - tig0023878:11113-11132 None:intergenic 45.0%
TGGAATGCAAAGGACAGTTG+AGG - tig0023878:11179-11198 None:intergenic 45.0%
! CCAAGAGTAGTGGAATGCAA+AGG - tig0023878:11189-11208 None:intergenic 45.0%
CCTTTGCATTCCACTACTCT+TGG + tig0023878:11186-11205 Msa1412260:CDS 45.0%
ACACTGTCACTGGAAAAAGC+AGG + tig0023878:11330-11349 Msa1412260:CDS 45.0%
CACTGTCACTGGAAAAAGCA+GGG + tig0023878:11331-11350 Msa1412260:CDS 45.0%
ACTGTCACTGGAAAAAGCAG+GGG + tig0023878:11332-11351 Msa1412260:CDS 45.0%
ATCAGTTTCATGGACGGTAG+CGG - tig0023878:11387-11406 None:intergenic 45.0%
AAGCAGAGACAAAAACCCAC+CGG + tig0023878:11484-11503 Msa1412260:CDS 45.0%
!!! TGGATTTTGATTGCACCGGT+GGG - tig0023878:11502-11521 None:intergenic 45.0%
!!! TTGGATTTTGATTGCACCGG+TGG - tig0023878:11503-11522 None:intergenic 45.0%
AAGAGGTCAAAGTCCCTATG+CGG + tig0023878:11531-11550 Msa1412260:CDS 45.0%
! GGAGCATCTAACCATCTCTA+TGG + tig0023878:11671-11690 Msa1412260:CDS 45.0%
GCATCTAACCATCTCTATGG+TGG + tig0023878:11674-11693 Msa1412260:CDS 45.0%
TTTCTTCCCCACCATAGAGA+TGG - tig0023878:11685-11704 None:intergenic 45.0%
GCTGTTCCTTGTGAACAGTT+TGG - tig0023878:11793-11812 None:intergenic 45.0%
TCAGAGCTCACCTTACCATT+TGG + tig0023878:11860-11879 Msa1412260:CDS 45.0%
CCAGGATTCACCAAATGGTA+AGG - tig0023878:11873-11892 None:intergenic 45.0%
! CCTTACCATTTGGTGAATCC+TGG + tig0023878:11870-11889 Msa1412260:CDS 45.0%
TCTGACCAGGATTCACCAAA+TGG - tig0023878:11878-11897 None:intergenic 45.0%
TTTGGCAGTTCACCAACACT+AGG - tig0023878:11983-12002 None:intergenic 45.0%
GCGACTATGAGATTCTCCAT+TGG - tig0023878:12179-12198 None:intergenic 45.0%
GTCGCGAAAGCAACATGATA+AGG + tig0023878:12194-12213 Msa1412260:CDS 45.0%
!!! AGACACACTTTTTCCAGGTG+TGG - tig0023878:12248-12267 None:intergenic 45.0%
GAAAAATGACCAGGTTGCTG+AGG + tig0023878:12420-12439 Msa1412260:CDS 45.0%
AAAATGACCAGGTTGCTGAG+GGG + tig0023878:12422-12441 Msa1412260:CDS 45.0%
TGAGGGGGAATTTGGTACAT+TGG + tig0023878:12438-12457 Msa1412260:CDS 45.0%
TGGTACATTGGATCAACCAC+CGG + tig0023878:12450-12469 Msa1412260:CDS 45.0%
! GCTTTAGTTTCAAAACCCGG+TGG - tig0023878:12469-12488 None:intergenic 45.0%
GTCATGAAGGCAACAACATG+AGG + tig0023878:12836-12855 Msa1412260:CDS 45.0%
CAAATTCACCCTTAGCAACC+TGG - tig0023878:13074-13093 None:intergenic 45.0%
CAGGTTGCTAAGGGTGAATT+TGG + tig0023878:13072-13091 Msa1412260:CDS 45.0%
! GTTACAGTTTGAAATGGCGG+TGG - tig0023878:13111-13130 None:intergenic 45.0%
ACTGCAACTCAGTATTGTCG+TGG - tig0023878:13140-13159 None:intergenic 45.0%
TACAGGTGTGATTCCAGTAG+AGG + tig0023878:13221-13240 Msa1412260:CDS 45.0%
CATGACAGTTAACAGGTTCC+TGG - tig0023878:13272-13291 None:intergenic 45.0%
CCTCCATCATGACAGTTAAC+AGG - tig0023878:13279-13298 None:intergenic 45.0%
CCTGTTAACTGTCATGATGG+AGG + tig0023878:13276-13295 Msa1412260:CDS 45.0%
! GTATCAGCGTTGCCAGATTT+TGG + tig0023878:13306-13325 Msa1412260:CDS 45.0%
! TTGTTGTTGCGGATCAACTC+CGG - tig0023878:13451-13470 None:intergenic 45.0%
!!! TATAAATGAAATATATTTTA+GGG + tig0023878:10302-10321 Msa1412260:intron 5.0%
ACGTGTGTGAGTGTCAGTTG+CGG - tig0023878:5691-5710 None:intergenic 50.0%
AAGCTGACGAACGTCCTGAA+TGG + tig0023878:6117-6136 Msa1412260:CDS 50.0%
CGTCCTGAATGGTTGCCTAA+TGG + tig0023878:6128-6147 Msa1412260:CDS 50.0%
CAGCCATTAGGCAACCATTC+AGG - tig0023878:6134-6153 None:intergenic 50.0%
CTGAATGGTTGCCTAATGGC+TGG + tig0023878:6132-6151 Msa1412260:CDS 50.0%
TAGAACCCGACAAAGTGGTC+CGG + tig0023878:6166-6185 Msa1412260:CDS 50.0%
GTTGTCCTAAATCGGTGAGC+TGG + tig0023878:6573-6592 Msa1412260:intron 50.0%
GCATTCTCCAAACAAGGAGG+AGG + tig0023878:7063-7082 Msa1412260:CDS 50.0%
CAGCATGCATTCTCCAAGCA+AGG + tig0023878:7225-7244 Msa1412260:CDS 50.0%
CATTTCTCTCCGTCCTTGCT+TGG - tig0023878:7241-7260 None:intergenic 50.0%
TGCAGGCGAGAATTCCATTG+TGG + tig0023878:7946-7965 Msa1412260:CDS 50.0%
AGGCGAGAATTCCATTGTGG+AGG + tig0023878:7949-7968 Msa1412260:CDS 50.0%
AGGTGGTAGATCCTCCACAA+TGG - tig0023878:7963-7982 None:intergenic 50.0%
ATTGTGGAGGATCTACCACC+TGG + tig0023878:7962-7981 Msa1412260:CDS 50.0%
TGAGCAAGTTAGAAGGGGAG+AGG + tig0023878:8804-8823 Msa1412260:intron 50.0%
TAGAAGGGGAGAGGAGTCTA+TGG + tig0023878:8813-8832 Msa1412260:intron 50.0%
!!! GGGCATTTTTTGGGCTACCA+AGG - tig0023878:9461-9480 None:intergenic 50.0%
! CCAAGCCTTATCCCACTAAG+TGG - tig0023878:9996-10015 None:intergenic 50.0%
CCACTTAGTGGGATAAGGCT+TGG + tig0023878:9993-10012 Msa1412260:intron 50.0%
CTTAGTGGGATAAGGCTTGG+TGG + tig0023878:9996-10015 Msa1412260:intron 50.0%
! GGTTTTTGTCTCTTGGCAGC+AGG - tig0023878:10238-10257 None:intergenic 50.0%
TGCATGGGTGTAGACTGCTT+TGG - tig0023878:10259-10278 None:intergenic 50.0%
GGTTGCTCTTGATACCTCAG+GGG + tig0023878:10503-10522 Msa1412260:CDS 50.0%
!!! AGTCGTTTTGAAGCCCGACA+AGG - tig0023878:10912-10931 None:intergenic 50.0%
TTGTCGGGCTTCAAAACGAC+TGG + tig0023878:10911-10930 Msa1412260:CDS 50.0%
GGATATGGAGTTCATCAGCC+TGG - tig0023878:10949-10968 None:intergenic 50.0%
TGGTGCATGGTCTGTAAGCT+TGG - tig0023878:11054-11073 None:intergenic 50.0%
ACCTGCTGCAGACAAACAAG+TGG + tig0023878:11121-11140 Msa1412260:CDS 50.0%
TCCACTTGTTTGTCTGCAGC+AGG - tig0023878:11125-11144 None:intergenic 50.0%
TTGGGTCAGACCAAGAGTAG+TGG - tig0023878:11199-11218 None:intergenic 50.0%
CCAGTGACAGTGTCAAATGC+AGG - tig0023878:11323-11342 None:intergenic 50.0%
CCTGCATTTGACACTGTCAC+TGG + tig0023878:11320-11339 Msa1412260:CDS 50.0%
TCAGTTTCATGGACGGTAGC+GGG - tig0023878:11386-11405 None:intergenic 50.0%
! GTCGCTTTGACAACCGCATA+GGG - tig0023878:11547-11566 None:intergenic 50.0%
! AGTCGCTTTGACAACCGCAT+AGG - tig0023878:11548-11567 None:intergenic 50.0%
TTATCAGAAGGGCTTGCCTC+CGG - tig0023878:11584-11603 None:intergenic 50.0%
!! GCAGTGGGCTTTTCTTTGCA+TGG - tig0023878:11632-11651 None:intergenic 50.0%
AGACGCATGACGAGTAAGCT+TGG - tig0023878:11708-11727 None:intergenic 50.0%
AAGGAGCTAGTCCTCAACTC+AGG - tig0023878:12130-12149 None:intergenic 50.0%
! GGAATCTGGAACCTGTGTTG+AGG + tig0023878:12215-12234 Msa1412260:CDS 50.0%
AAATGACCAGGTTGCTGAGG+GGG + tig0023878:12423-12442 Msa1412260:CDS 50.0%
GGTACATTGGATCAACCACC+GGG + tig0023878:12451-12470 Msa1412260:CDS 50.0%
! GGAATCTGGAACCTGTGTTG+AGG + tig0023878:12215-12234 Msa1412260:CDS 50.0%
!! TTGAGGACTAGCTCCACATC+TGG + tig0023878:12556-12575 Msa1412260:CDS 50.0%
CAGGTTGCTGAGGGTGAATT+TGG + tig0023878:12748-12767 Msa1412260:CDS 50.0%
AGGCAACAACATGAGGAACC+TGG + tig0023878:12843-12862 Msa1412260:CDS 50.0%
TAGTCCTCAACACAGGTTCC+AGG - tig0023878:12546-12565 None:intergenic 50.0%
! AACTGTCATGATGGAGGGGA+TGG + tig0023878:13282-13301 Msa1412260:CDS 50.0%
AACCTTGCAGGCTCAGAGAT+GGG - tig0023878:13425-13444 None:intergenic 50.0%
TGTTGTTGCGGATCAACTCC+GGG - tig0023878:13450-13469 None:intergenic 50.0%
GCGGACATGTGTAGCCATGT+AGG - tig0023878:5672-5691 None:intergenic 55.0%
GGACGTTCGTCAGCTTTCTC+TGG - tig0023878:6113-6132 None:intergenic 55.0%
CATAGCCGGACCACTTTGTC+GGG - tig0023878:6174-6193 None:intergenic 55.0%
CCATAGCCGGACCACTTTGT+CGG - tig0023878:6175-6194 None:intergenic 55.0%
CGACAAAGTGGTCCGGCTAT+GGG + tig0023878:6173-6192 Msa1412260:CDS 55.0%
! ATCTCTGGGGGACTACAAGC+TGG - tig0023878:6337-6356 None:intergenic 55.0%
GCAGCATTCTCCAAGCAAGG+AGG + tig0023878:7105-7124 Msa1412260:CDS 55.0%
CCTCCTTGCTTGGAGAATGC+TGG - tig0023878:7108-7127 None:intergenic 55.0%
CCAGCATTCTCCAAGCAAGG+AGG + tig0023878:7150-7169 Msa1412260:CDS 55.0%
TGGAGGATCTACCACCTGGA+TGG + tig0023878:7966-7985 Msa1412260:CDS 55.0%
CTGCCCCACTTAGTGGGATA+AGG + tig0023878:9988-10007 Msa1412260:intron 55.0%
TGTCTCTTGGCAGCAGGTGA+TGG - tig0023878:10232-10251 None:intergenic 55.0%
CCAGTCTCCGTGAAAACCGA+TGG - tig0023878:10587-10606 None:intergenic 55.0%
!!! CCATCGGTTTTCACGGAGAC+TGG + tig0023878:10584-10603 Msa1412260:CDS 55.0%
GCCGGGCTCTTTCTTCTTAC+TGG - tig0023878:10886-10905 None:intergenic 55.0%
AAGAGCCCGGCATTCCTTGT+CGG + tig0023878:10895-10914 Msa1412260:CDS 55.0%
TGAAGCCCGACAAGGAATGC+CGG - tig0023878:10904-10923 None:intergenic 55.0%
CTCTTGGTCTGACCCAAGCT+TGG + tig0023878:11202-11221 Msa1412260:CDS 55.0%
TGGTGGTAACACACCCGTGA+GGG - tig0023878:11243-11262 None:intergenic 55.0%
CGGTTGTCAAAGCGACTTGC+TGG + tig0023878:11551-11570 Msa1412260:CDS 55.0%
!! GCGACTTGCTGGCATTGAAC+CGG + tig0023878:11562-11581 Msa1412260:CDS 55.0%
! ACTTGCTGGCATTGAACCGG+AGG + tig0023878:11565-11584 Msa1412260:CDS 55.0%
ATCCTGGTCAGATCCATGCC+TGG + tig0023878:11886-11905 Msa1412260:CDS 55.0%
TTCCAGGCATGGATCTGACC+AGG - tig0023878:11891-11910 None:intergenic 55.0%
GACTCTCACTGGTGCTTTGC+CGG + tig0023878:11922-11941 Msa1412260:CDS 55.0%
TGGGAGAGTGACAACCAGCA+TGG + tig0023878:12015-12034 Msa1412260:CDS 55.0%
TGCTTGGGCAACCTGAGTTG+AGG + tig0023878:12116-12135 Msa1412260:CDS 55.0%
GTGGAGCTAGACCTCAACAC+AGG - tig0023878:12229-12248 None:intergenic 55.0%
! TTGAGGTCTAGCTCCACACC+TGG + tig0023878:12232-12251 Msa1412260:CDS 55.0%
CAAATTCCCCCTCAGCAACC+TGG - tig0023878:12432-12451 None:intergenic 55.0%
CAGGTTGCTGAGGGGGAATT+TGG + tig0023878:12430-12449 Msa1412260:CDS 55.0%
GTGGAGCTAGTCCTCAACAC+AGG - tig0023878:12553-12572 None:intergenic 55.0%
GGAACCTGGAACCTGTGTTG+AGG + tig0023878:12857-12876 Msa1412260:CDS 55.0%
!! TTGAGGACTAGCTCCCCATC+TGG + tig0023878:12874-12893 Msa1412260:CDS 55.0%
! CTCATTGATGACTGCTGCCC+TGG - tig0023878:13393-13412 None:intergenic 55.0%
TGCAGGCTCAGAGATGGGAA+TGG - tig0023878:13420-13439 None:intergenic 55.0%
TTCCCATCTCTGAGCCTGCA+AGG + tig0023878:13420-13439 Msa1412260:CDS 55.0%
CAACCTTGCAGGCTCAGAGA+TGG - tig0023878:13426-13445 None:intergenic 55.0%
GGGGCAGTCCAACACCTACA+TGG + tig0023878:5655-5674 Msa1412260:intron 60.0%
CCGACAAAGTGGTCCGGCTA+TGG + tig0023878:6172-6191 Msa1412260:CDS 60.0%
! CGGTTTTCACGGAGACTGGC+TGG + tig0023878:10588-10607 Msa1412260:CDS 60.0%
AGAGCCCGGCATTCCTTGTC+GGG + tig0023878:10896-10915 Msa1412260:CDS 60.0%
GAAGCCCGACAAGGAATGCC+GGG - tig0023878:10903-10922 None:intergenic 60.0%
CGGGCTTCAAAACGACTGGC+TGG + tig0023878:10915-10934 Msa1412260:CDS 60.0%
! GACTGGCTGGATCTGAACCC+AGG + tig0023878:10928-10947 Msa1412260:CDS 60.0%
CTGGTGGTAACACACCCGTG+AGG - tig0023878:11244-11263 None:intergenic 60.0%
GGGGAGCTAGTCCTCAACAC+AGG - tig0023878:12871-12890 None:intergenic 60.0%
!! AGCAGTTCAAGGGGGTGTCC+AGG + tig0023878:13251-13270 Msa1412260:CDS 60.0%
ACAGGAGGGAAGTCCATGCC+AGG + tig0023878:13372-13391 Msa1412260:CDS 60.0%
CAGGAGGGAAGTCCATGCCA+GGG + tig0023878:13373-13392 Msa1412260:CDS 60.0%
TGATGACTGCTGCCCTGGCA+TGG - tig0023878:13388-13407 None:intergenic 60.0%
CTGAGCCTGCAAGGTTGTCC+CGG + tig0023878:13429-13448 Msa1412260:CDS 60.0%
CAACTCCGGGACAACCTTGC+AGG - tig0023878:13437-13456 None:intergenic 60.0%
GGTACATCGGAGCAGCCTCC+AGG + tig0023878:12769-12788 Msa1412260:CDS 65.0%
Chromosome Type Strat End Strand Name
tig0023878 gene 5030 13506 5030 ID=Msa1412260;Name=Msa1412260
tig0023878 mRNA 5030 13506 5030 ID=Msa1412260-mRNA-1;Parent=Msa1412260;Name=Msa1412260-mRNA-1;_AED=0.05;_eAED=0.05;_QI=162|1|0.75|1|0.85|0.75|8|0|1301
tig0023878 exon 5030 5171 5030 ID=Msa1412260-mRNA-1:exon:20502;Parent=Msa1412260-mRNA-1
tig0023878 exon 5899 5999 5899 ID=Msa1412260-mRNA-1:exon:20503;Parent=Msa1412260-mRNA-1
tig0023878 exon 6107 6208 6107 ID=Msa1412260-mRNA-1:exon:20504;Parent=Msa1412260-mRNA-1
tig0023878 exon 6947 7285 6947 ID=Msa1412260-mRNA-1:exon:20505;Parent=Msa1412260-mRNA-1
tig0023878 exon 7944 8039 7944 ID=Msa1412260-mRNA-1:exon:20506;Parent=Msa1412260-mRNA-1
tig0023878 exon 8252 8386 8252 ID=Msa1412260-mRNA-1:exon:20507;Parent=Msa1412260-mRNA-1
tig0023878 exon 10229 10292 10229 ID=Msa1412260-mRNA-1:exon:20508;Parent=Msa1412260-mRNA-1
tig0023878 exon 10418 13506 10418 ID=Msa1412260-mRNA-1:exon:20509;Parent=Msa1412260-mRNA-1
tig0023878 five_prime_UTR 5030 5171 5030 ID=Msa1412260-mRNA-1:five_prime_utr;Parent=Msa1412260-mRNA-1
tig0023878 five_prime_UTR 5899 5918 5899 ID=Msa1412260-mRNA-1:five_prime_utr;Parent=Msa1412260-mRNA-1
tig0023878 CDS 5919 5999 5919 ID=Msa1412260-mRNA-1:cds;Parent=Msa1412260-mRNA-1
tig0023878 CDS 6107 6208 6107 ID=Msa1412260-mRNA-1:cds;Parent=Msa1412260-mRNA-1
tig0023878 CDS 6947 7285 6947 ID=Msa1412260-mRNA-1:cds;Parent=Msa1412260-mRNA-1
tig0023878 CDS 7944 8039 7944 ID=Msa1412260-mRNA-1:cds;Parent=Msa1412260-mRNA-1
tig0023878 CDS 8252 8386 8252 ID=Msa1412260-mRNA-1:cds;Parent=Msa1412260-mRNA-1
tig0023878 CDS 10229 10292 10229 ID=Msa1412260-mRNA-1:cds;Parent=Msa1412260-mRNA-1
tig0023878 CDS 10418 13506 10418 ID=Msa1412260-mRNA-1:cds;Parent=Msa1412260-mRNA-1
Gene Sequence

>Msa1412260

ATGGGAAAACCAAACGTTAAAAAATCTGGAGGAACCAACAAACGGATTGACAATGACACAAAACGCAACTCTAAACAACAAACTCCAGAGAAAGCTGACGAACGTCCTGAATGGTTGCCTAATGGCTGGGATATCGAAGTTAGAACCCGACAAAGTGGTCCGGCTATGGGATCTGCATATAAGTGTTACATTGATCCATCAAATACATACAAATTCTACTCCAAACCTGAGGTATTACGACATCTTGAAACTATAAAGGACAGAAAATGCTCTTCCAATAAGAAGAAAGGCACTAGCAAGCATTCTCCAAACAAGGAGGAGGAGAAACACACCAAGAGTAAGCAGCATTCTCCAAGCAAGGAGGAAGAGAAAAAGACTAAGAGTAACCAGCATTCTCCAAGCAAGGAGGAAGAGAAATGCATTAACATGCATTCTCCAAACAAGGGGGAAGAGAAACACATCAGCATGCATTCTCCAAGCAAGGACGGAGAGAAATGCACTAACATGCACTCTCCAAGCAATGTTGCAGGCGAGAATTCCATTGTGGAGGATCTACCACCTGGATGGATTAAAGAAGTAAAGATTCGGAAGCACAGAAGTGGCATAAAGAAAGATTGGTTTTATATTGATCCAGTGAGTGGATATGTATTCCATTCCAAGAAGGATGTACAACGTTTTCTCAAATCTGGAGATATAGCCAAGTGTGCCATTAAACCAAGTAGAAGACAATATCAAGATGAAGACAACTCAACTCCATCACCTGCTGCCAAGAGACAAAAACCAAAGCAGTCTACACCCATGCAAAAGATTTTTGTTGCCAAAGAACCAGTTGAAAGCTTAGAATTGCCCGATGTTAACAACTCAAGGAAAGGGCAAGATGTGAATGTGCCATCTCGAATGATGGTTGCTCTTGATACCTCAGGGGAATCCTTGAAAATGAATCACAGTAACCATAGCATATCCAAAAATGATGTCAATGTGAGCCATCGGTTTTCACGGAGACTGGCTGGTGTTGAACCTGTCAAGTTGGTTGACAATGTGATTAATGATGAGGCTCTTCTAGTTCCAAAAAGAAACTTGAGAAAAAACAGAACTACTCTAGGCGCTGATATGGAAAATAAATCATCTCAGCATTTCAAGGGTGTCCCAAAAATCGAGCAACCAAACGCAATGGACACAAGCAACACTCTTTCTGAAGTAGTTTTCAAGGAACAACCACGTCAACTAGAAAGAGATAAAATCGAAGACAATAAGCCAGAATTTCATACCAACCCAAACAAATCCAGTAAGAAGAAAGAGCCCGGCATTCCTTGTCGGGCTTCAAAACGACTGGCTGGATCTGAACCCAGGCTGATGAACTCCATATCCTGTGAAAAAGCTTCCAAATGTAAAAGCACAAGGTCTAAAGAAGTCATAGCTGAATTGCAACTAAGTGAGGGTGGGCCAGTTACCAAGCTTACAGACCATGCACCATTACATAGAGAGTCGGGAAATAAAAGAAGAAAATCTCCTAGAATCATACCTGCTGCAGACAAACAAGTGGAAAAACCTGAAGTGGATGATGAGAAATCAGAACCTCAACTGTCCTTTGCATTCCACTACTCTTGGTCTGACCCAAGCTTGGATTATGCAATCAATACCCTCACGGGTGTGTTACCACCAGTTGATAATCCTCTTGATAATGGACCTTCTACAGTCCCTGAAATTGATATTCTAAAACCTGCATTTGACACTGTCACTGGAAAAAGCAGGGGCAGTCAAAACATTTCAGTTTATAATGGACCCGCTACCGTCCATGAAACTGATATTCAAAAAACATTGTTTGACAACGTTACTAGAGGAAGCAATGACAGTCAAAACAATTTGCTTGACAATGTTACAGAAAGCAGAGACAAAAACCCACCGGTGCAATCAAAATCCAAGAGAAAGAAAGAGGTCAAAGTCCCTATGCGGTTGTCAAAGCGACTTGCTGGCATTGAACCGGAGGCAAGCCCTTCTGATAAAGCTCTTGAGTATTCCAGTAGAAAACCATGCAAAGAAAAGCCCACTGCAACTGTACTTTTAACTAATGGAGCATCTAACCATCTCTATGGTGGGGAAGAAACCAAGCTTACTCGTCATGCGTCTGAGAGTTTGAAAGCAGAAGTGCTAGGAGAATCATCAAGAAAGTGTGGTAAGTCATATGATACCCAAACTGTTCACAAGGAACAGCAATCGGAGAGAGCTGAAGCTAAACATATTAGTAATGATAGGTCAAAGTCAGAGCTCACCTTACCATTTGGTGAATCCTGGTCAGATCCATGCCTGGAATTTGCATTCAAGACTCTCACTGGTGCTTTGCCGGTTGATTCTTCTGCTGAGTTTTTTAAAGTTTCGACTCCTAGTGTTGGTGAACTGCCAAACAATGAGTTGTATGGGAGAGTGACAACCAGCATGGATAAAAAAGTTCATGACAAAACAAACCAATCCGAAAACAAGAAAGAGCGTAATATGAATGGTCAGTCTTCAAAGATACTGCTTGGGCAACCTGAGTTGAGGACTAGCTCCTTATCCCGAAAAAATATGCCTAAATTCACCAATGGAGAATCTCATAGTCGCGAAAGCAACATGATAAGGAATCTGGAACCTGTGTTGAGGTCTAGCTCCACACCTGGAAAAAGTGTGTCTAAATTAACCACTCAAGAATCTCACAATCATGAAGAGAACATGATGAGGAATTTGTTTGGAGAACCTCTATTTGTTGAAGATGAAAACACAACCCAACTTCTGCATCATTCTAGAACTAATGCATACTCACAAATACATGAAGAGCCATTAAAGAAAAATGACCAGGTTGCTGAGGGGGAATTTGGTACATTGGATCAACCACCGGGTTTTGAAACTAAAGCGTATAACCATGGCAACAGAGAATCTTGTAGTCATGAAGGCAACAACATAAGGAATCTGGAACCTGTGTTGAGGACTAGCTCCACATCTGGAAAAAATGCGTCAACCATTCGAGAATCTCATAATCATGAAGACAGCATAATGAGAAATTTGTTTGGAGAACCTCTATATGTTGAAGATAAAAACACAACCCAACTTCTGCATCGTTCTAGAACTAATGCATACTCACAAATACATGAAGAGCCATTAAAGAAAAATGATCAGGTTGCTGAGGGTGAATTTGGTACATCGGAGCAGCCTCCAGGTTTTGAAACTAAAACGTTAAACAATGGCAATGGAGAATCTCTTAGTCATGAAGGCAACAACATGAGGAACCTGGAACCTGTGTTGAGGACTAGCTCCCCATCTGGAAAAAATGTGTCTAAATTAGCCACTGGAGAATTTCATAGTCACGAAGACAACATAATGATGAGTTTGTTTGGCGAACCTCTGTATGTTGAAGATGAAAACACAACCCAACTTCTGCATCATTCTAGAACTGATGCATACTCACAAATACATGAAGAGCCAGTAAAGAAAAATGACCAGGTTGCTAAGGGTGAATTTGGTACATCGGAGCAACCACCGCCATTTCAAACTGTAACGTTAAACCACGACAATACTGAGTTGCAGTTCTGTGAATCTTTTATGAATTCTTGGTCAGACCCATGCTTAGAATTTGCATTTAAGACTCTTACAGGTGTGATTCCAGTAGAGGAAAATTTAGCAGTTCAAGGGGGTGTCCAGGAACCTGTTAACTGTCATGATGGAGGGGATGGTGTATCAGCGTTGCCAGATTTTGGATCTTCCAGTTTTTCACAAAGTGATTTCTCATTTCACTTTGACACAGGAGGGAAGTCCATGCCAGGGCAGCAGTCATCAATGAGCTCTCCATTCCCATCTCTGAGCCTGCAAGGTTGTCCCGGAGTTGATCCGCAACAACAATATTCCCAGTTCAATAATAATTTTCAAAGACGGTAA
Protein sequence

>Msa1412260

MGKPNVKKSGGTNKRIDNDTKRNSKQQTPEKADERPEWLPNGWDIEVRTRQSGPAMGSAYKCYIDPSNTYKFYSKPEVLRHLETIKDRKCSSNKKKGTSKHSPNKEEEKHTKSKQHSPSKEEEKKTKSNQHSPSKEEEKCINMHSPNKGEEKHISMHSPSKDGEKCTNMHSPSNVAGENSIVEDLPPGWIKEVKIRKHRSGIKKDWFYIDPVSGYVFHSKKDVQRFLKSGDIAKCAIKPSRRQYQDEDNSTPSPAAKRQKPKQSTPMQKIFVAKEPVESLELPDVNNSRKGQDVNVPSRMMVALDTSGESLKMNHSNHSISKNDVNVSHRFSRRLAGVEPVKLVDNVINDEALLVPKRNLRKNRTTLGADMENKSSQHFKGVPKIEQPNAMDTSNTLSEVVFKEQPRQLERDKIEDNKPEFHTNPNKSSKKKEPGIPCRASKRLAGSEPRLMNSISCEKASKCKSTRSKEVIAELQLSEGGPVTKLTDHAPLHRESGNKRRKSPRIIPAADKQVEKPEVDDEKSEPQLSFAFHYSWSDPSLDYAINTLTGVLPPVDNPLDNGPSTVPEIDILKPAFDTVTGKSRGSQNISVYNGPATVHETDIQKTLFDNVTRGSNDSQNNLLDNVTESRDKNPPVQSKSKRKKEVKVPMRLSKRLAGIEPEASPSDKALEYSSRKPCKEKPTATVLLTNGASNHLYGGEETKLTRHASESLKAEVLGESSRKCGKSYDTQTVHKEQQSERAEAKHISNDRSKSELTLPFGESWSDPCLEFAFKTLTGALPVDSSAEFFKVSTPSVGELPNNELYGRVTTSMDKKVHDKTNQSENKKERNMNGQSSKILLGQPELRTSSLSRKNMPKFTNGESHSRESNMIRNLEPVLRSSSTPGKSVSKLTTQESHNHEENMMRNLFGEPLFVEDENTTQLLHHSRTNAYSQIHEEPLKKNDQVAEGEFGTLDQPPGFETKAYNHGNRESCSHEGNNIRNLEPVLRTSSTSGKNASTIRESHNHEDSIMRNLFGEPLYVEDKNTTQLLHRSRTNAYSQIHEEPLKKNDQVAEGEFGTSEQPPGFETKTLNNGNGESLSHEGNNMRNLEPVLRTSSPSGKNVSKLATGEFHSHEDNIMMSLFGEPLYVEDENTTQLLHHSRTDAYSQIHEEPVKKNDQVAKGEFGTSEQPPPFQTVTLNHDNTELQFCESFMNSWSDPCLEFAFKTLTGVIPVEENLAVQGGVQEPVNCHDGGDGVSALPDFGSSSFSQSDFSFHFDTGGKSMPGQQSSMSSPFPSLSLQGCPGVDPQQQYSQFNNNFQRR*