Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1412680 | sp|F4HVZ5|CSU2_ARATH | 67.347 | 294 | 69 | 7 | 9 | 292 | 2 | 278 | 1.58e-118 | 344 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1412680 | A0A072VMT1 | 96.575 | 292 | 9 | 1 | 1 | 292 | 1 | 291 | 0.0 | 569 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0081230 | Msa1412680 | 0.907435 | 5.084171e-81 | -8.615850e-47 |
| Msa1412680 | Msa1416390 | 0.916761 | 1.206435e-85 | -8.615850e-47 |
| Msa0513240 | Msa1412680 | 0.866974 | 1.925762e-65 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1412680 | MtrunA17_Chr1g0193641 | 96.575 | 292 | 9 | 1 | 1 | 292 | 1 | 291 | 0.0 | 569 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1412680 | AT1G02330.1 | 67.347 | 294 | 69 | 7 | 9 | 292 | 2 | 278 | 1.61e-119 | 344 |
Find 88 sgRNAs with CRISPR-Local
Find 308 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACAACAGAATTGTGTTAATT+TGG | 0.160379 | tig0023943:-14067 | Msa1412680:three_prime_UTR |
| ACTTCTGGTAATGGGTAAAT+AGG | 0.291025 | tig0023943:-13977 | Msa1412680:three_prime_UTR |
| TTCATACAATATCATCTTAT+AGG | 0.292687 | tig0023943:+13999 | None:intergenic |
| TGCTGTAAAGTGAGGGTTGC+AGG | 0.294279 | tig0023943:+18465 | None:intergenic |
| GATGATATTGTATGAACTTC+TGG | 0.303369 | tig0023943:-13992 | Msa1412680:three_prime_UTR |
| TGGCTGAATTGATACATTCT+TGG | 0.309889 | tig0023943:+14137 | None:intergenic |
| TAAGGATGACCTTGTTCTTC+AGG | 0.316218 | tig0023943:-18364 | Msa1412680:CDS |
| TGCTCAAGAAACCGCTGTTT+TGG | 0.329944 | tig0023943:-18334 | Msa1412680:CDS |
| CACTAAAGAGTTGCTTGTTT+AGG | 0.332227 | tig0023943:-13891 | Msa1412680:three_prime_UTR |
| ATCATCTTATAGGCTATTAC+AGG | 0.351119 | tig0023943:+14009 | None:intergenic |
| TATGAGAAAGCATACTCTAT+TGG | 0.360659 | tig0023943:+17417 | None:intergenic |
| TGAAACGCTCTAACATGAAT+TGG | 0.363110 | tig0023943:+14321 | None:intergenic |
| GTTAGCTTAATGCCATGATC+TGG | 0.364875 | tig0023943:-13773 | Msa1412680:three_prime_UTR |
| CCTTCTTTCGCTTTCGTCAT+CGG | 0.368584 | tig0023943:+18628 | None:intergenic |
| CTGATTATTTCCAGCGTGGC+AGG | 0.375156 | tig0023943:-16877 | Msa1412680:CDS |
| ATAGGATTCGGGGCTTTGTT+AGG | 0.379950 | tig0023943:-13959 | Msa1412680:three_prime_UTR |
| ATACTAACTTTAAGATGGTC+AGG | 0.382449 | tig0023943:+18107 | None:intergenic |
| CGTTGTTTGGTTGAGATTGT+GGG | 0.394815 | tig0023943:+18654 | None:intergenic |
| GACGCTGCTCGGCTATGCTT+TGG | 0.397317 | tig0023943:+14117 | None:intergenic |
| AACGAGAACGTCACCGTGTT+CGG | 0.398546 | tig0023943:-14295 | Msa1412680:CDS |
| GCCTGCCTCTGTACTGCTCC+AGG | 0.400132 | tig0023943:+14353 | None:intergenic |
| GTAATGGGTAAATAGGATTC+GGG | 0.403790 | tig0023943:-13970 | Msa1412680:three_prime_UTR |
| TAATCAGCACTGTAACTTGA+TGG | 0.414773 | tig0023943:+16893 | None:intergenic |
| AAACAACGAGAAAGAAAATC+AGG | 0.418985 | tig0023943:-18492 | Msa1412680:CDS |
| GTTCTGTTGGAGTTCTCTTT+CGG | 0.419541 | tig0023943:+18690 | None:intergenic |
| TCAATGAACTCATACATATT+GGG | 0.420263 | tig0023943:+18303 | None:intergenic |
| TCGTTGTTTGGTTGAGATTG+TGG | 0.420914 | tig0023943:+18653 | None:intergenic |
| CGGTGGCGATGGAGCTGATA+AGG | 0.421129 | tig0023943:-18382 | Msa1412680:CDS |
| AGCTCTACACAATGGACAAC+TGG | 0.421345 | tig0023943:-17459 | Msa1412680:CDS |
| CTTCTATCTTTGTACAGCTC+AGG | 0.422118 | tig0023943:+14428 | None:intergenic |
| TCGTCATCGGAATCGTTGTT+TGG | 0.423184 | tig0023943:+18641 | None:intergenic |
| GCTAAACCGCTGGAAATTCC+AGG | 0.423336 | tig0023943:+18435 | None:intergenic |
| TTGGTTGAGATTGTGGGGAT+TGG | 0.427832 | tig0023943:+18660 | None:intergenic |
| GGTAATGGGTAAATAGGATT+CGG | 0.430961 | tig0023943:-13971 | Msa1412680:three_prime_UTR |
| TTGTATGAACTTCTGGTAAT+GGG | 0.431683 | tig0023943:-13985 | Msa1412680:three_prime_UTR |
| TTCTGTTGTTGCCTCAGTAT+AGG | 0.447150 | tig0023943:+14081 | None:intergenic |
| GTACAAAGATAGAAGTCAAC+AGG | 0.449055 | tig0023943:-14420 | Msa1412680:CDS |
| GATTGGTCGCATTGTTCTGT+TGG | 0.452770 | tig0023943:+18677 | None:intergenic |
| CAGTATAGGCCACAGTATAT+CGG | 0.456565 | tig0023943:+14095 | None:intergenic |
| CCGATGACGAAAGCGAAAGA+AGG | 0.459868 | tig0023943:-18628 | Msa1412680:intron |
| AACGATACCGGCGGTGGCGA+TGG | 0.468393 | tig0023943:-18393 | Msa1412680:CDS |
| TCTGCAGGAAAAGAGGCTTA+TGG | 0.474876 | tig0023943:-16945 | Msa1412680:CDS |
| GCACAGATTAATGTAACATA+TGG | 0.477308 | tig0023943:+14247 | None:intergenic |
| ATTGTATGAACTTCTGGTAA+TGG | 0.489403 | tig0023943:-13986 | Msa1412680:three_prime_UTR |
| TGCTCCAGGAGCATCACTGC+TGG | 0.497726 | tig0023943:+14367 | None:intergenic |
| AGAGCAAATAGCAGCTATTG+AGG | 0.503412 | tig0023943:+13811 | None:intergenic |
| GCAAATAGCAACCCAGATCA+TGG | 0.510234 | tig0023943:+13761 | None:intergenic |
| AAAAGCTTCTGCAGGAAAAG+AGG | 0.514660 | tig0023943:-16952 | Msa1412680:CDS |
| AACGTGTAACAGATTAGCAT+TGG | 0.518558 | tig0023943:-18535 | Msa1412680:intron |
| TCCTGGAGCAGTACAGAGGC+AGG | 0.521841 | tig0023943:-14354 | Msa1412680:CDS |
| GGCTTTAGCAGCTAAACCGC+TGG | 0.529856 | tig0023943:+18425 | None:intergenic |
| AATCAGCACTGTAACTTGAT+GGG | 0.531105 | tig0023943:+16894 | None:intergenic |
| CAGGGTTAAGTATATTGAGC+AGG | 0.535585 | tig0023943:-18219 | Msa1412680:CDS |
| ATCAGCTCCATCGCCACCGC+CGG | 0.538056 | tig0023943:+18386 | None:intergenic |
| GAGTCCAGCAGTGATGCTCC+TGG | 0.538444 | tig0023943:-14371 | Msa1412680:CDS |
| ACTTTACAGCAATCTCAGCC+TGG | 0.538622 | tig0023943:-18453 | Msa1412680:CDS |
| CGAAACAAGAGAAGCCGCGA+AGG | 0.554102 | tig0023943:-18721 | Msa1412680:CDS |
| GCCGTTGATAAGAACGATAC+CGG | 0.554595 | tig0023943:-18405 | Msa1412680:CDS |
| TAACATGAATTGGTCTGTTG+CGG | 0.559565 | tig0023943:+14331 | None:intergenic |
| GCCGGTATCGTTCTTATCAA+CGG | 0.559897 | tig0023943:+18404 | None:intergenic |
| TGATTATTTCCAGCGTGGCA+GGG | 0.563700 | tig0023943:-16876 | Msa1412680:CDS |
| TTAGCTTAATGCCATGATCT+GGG | 0.565776 | tig0023943:-13772 | Msa1412680:three_prime_UTR |
| GCTGTAAAGTGAGGGTTGCA+GGG | 0.580348 | tig0023943:+18466 | None:intergenic |
| TAGAGCTTAGAACTAAGAAG+AGG | 0.585788 | tig0023943:-18769 | Msa1412680:five_prime_UTR |
| ATTTATGCTATCGCCGAACA+CGG | 0.586188 | tig0023943:+14282 | None:intergenic |
| ATCATGGCATTAAGCTAACA+TGG | 0.594300 | tig0023943:+13777 | None:intergenic |
| GCAGGAAAAGAGGCTTATGG+TGG | 0.595924 | tig0023943:-16942 | Msa1412680:CDS |
| CAAAAGTATCCTGAAGAACA+AGG | 0.601579 | tig0023943:+18355 | None:intergenic |
| TACTAACTTTAAGATGGTCA+GGG | 0.607641 | tig0023943:+18108 | None:intergenic |
| GAGGAACAACAACACATCGA+TGG | 0.608825 | tig0023943:-18750 | Msa1412680:exon |
| GATAAGAACGATACCGGCGG+TGG | 0.618450 | tig0023943:-18399 | Msa1412680:CDS |
| CAGCATAATCCCTGCCACGC+TGG | 0.625209 | tig0023943:+16867 | None:intergenic |
| ACAGTATATCGGACGCTGCT+CGG | 0.630157 | tig0023943:+14106 | None:intergenic |
| GTTGTTTGGTTGAGATTGTG+GGG | 0.639164 | tig0023943:+18655 | None:intergenic |
| CAGGAATTAGCTAAGAAGAG+AGG | 0.642991 | tig0023943:-18200 | Msa1412680:CDS |
| CAATAGTGTCTTTAGTCACG+AGG | 0.644643 | tig0023943:+13734 | None:intergenic |
| GCTGAGATTGCTGTAAAGTG+AGG | 0.649266 | tig0023943:+18457 | None:intergenic |
| ATGCTCCTGGAGCAGTACAG+AGG | 0.655636 | tig0023943:-14358 | Msa1412680:CDS |
| CAGAAGAAAGCTCTACACAA+TGG | 0.662331 | tig0023943:-17467 | Msa1412680:CDS |
| GGGATCTTCATCCAAAACAG+CGG | 0.665742 | tig0023943:+18323 | None:intergenic |
| CAGGAAAAGAGGCTTATGGT+GGG | 0.669327 | tig0023943:-16941 | Msa1412680:CDS |
| CTGAGATTGCTGTAAAGTGA+GGG | 0.680238 | tig0023943:+18458 | None:intergenic |
| ATATACTGTGGCCTATACTG+AGG | 0.683424 | tig0023943:-14092 | Msa1412680:three_prime_UTR |
| TCTCAGCCTGGAATTTCCAG+CGG | 0.683981 | tig0023943:-18441 | Msa1412680:CDS |
| GAGCAGCGTCCGATATACTG+TGG | 0.716045 | tig0023943:-14104 | Msa1412680:three_prime_UTR |
| TAATGGGTAAATAGGATTCG+GGG | 0.733168 | tig0023943:-13969 | Msa1412680:three_prime_UTR |
| AGTGCTGATTATTTCCAGCG+TGG | 0.743724 | tig0023943:-16881 | Msa1412680:CDS |
| GTTGATAAGAACGATACCGG+CGG | 0.760815 | tig0023943:-18402 | Msa1412680:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AGTTATAATTAGAATTTTTT+TGG | - | tig0023943:14932-14951 | Msa1412680:intron | 10.0% |
| !!! | TTTAATTATTTTTTCTAACT+AGG | + | tig0023943:16867-16886 | None:intergenic | 10.0% |
| !!! | ACGTTAATTTGATTAATTAT+TGG | + | tig0023943:13965-13984 | None:intergenic | 15.0% |
| !!! | AAAAAATACTAACTTTAAGA+TGG | + | tig0023943:14416-14435 | None:intergenic | 15.0% |
| !! | TAATATTTCTCTATTATAAG+TGG | - | tig0023943:14955-14974 | Msa1412680:intron | 15.0% |
| !! | TTTCATAAAGAATATAAATG+AGG | + | tig0023943:15743-15762 | None:intergenic | 15.0% |
| !!! | TTTTTTTTTTATACATCACA+TGG | - | tig0023943:15928-15947 | Msa1412680:intron | 15.0% |
| !!! | GTAATAATTGTCATTTTTTT+TGG | - | tig0023943:16302-16321 | Msa1412680:intron | 15.0% |
| !!! | AATTCATATAATTTGTAGAA+CGG | + | tig0023943:16470-16489 | None:intergenic | 15.0% |
| !! | TTGTCAATTATTTATTAGTT+GGG | - | tig0023943:16918-16937 | Msa1412680:CDS | 15.0% |
| !!! | ATTTGGTAAAAACTATTTTA+GGG | + | tig0023943:17200-17219 | None:intergenic | 15.0% |
| !!! | TATTTGGTAAAAACTATTTT+AGG | + | tig0023943:17201-17220 | None:intergenic | 15.0% |
| !!! | TTCAATTTTGAATGAAAAAA+TGG | - | tig0023943:17597-17616 | Msa1412680:intron | 15.0% |
| !!! | TTTTAAATGTTTCTTTTCTT+AGG | - | tig0023943:17731-17750 | Msa1412680:intron | 15.0% |
| !! | TTTGTTAAAAAAAAAACACA+AGG | + | tig0023943:17853-17872 | None:intergenic | 15.0% |
| !!! | CACTTCATAAATTTTACATT+AGG | - | tig0023943:13927-13946 | Msa1412680:three_prime_UTR | 20.0% |
| !!! | TTAAGTTGTTTATCAAAACA+GGG | + | tig0023943:14562-14581 | None:intergenic | 20.0% |
| !!! | ATTAAGTTGTTTATCAAAAC+AGG | + | tig0023943:14563-14582 | None:intergenic | 20.0% |
| !!! | CTTTATTTTATCTTTTGTTG+TGG | + | tig0023943:14606-14625 | None:intergenic | 20.0% |
| !! | TTAAAAAACAAAGATACCAA+TGG | + | tig0023943:15388-15407 | None:intergenic | 20.0% |
| !! | AATCTATAATGAAAGAATCA+GGG | + | tig0023943:15699-15718 | None:intergenic | 20.0% |
| !! | TAATCTATAATGAAAGAATC+AGG | + | tig0023943:15700-15719 | None:intergenic | 20.0% |
| !! | AAAGAATATAAATGAGGTAA+AGG | + | tig0023943:15737-15756 | None:intergenic | 20.0% |
| !! | GTTGTCAATTATTTATTAGT+TGG | - | tig0023943:16917-16936 | Msa1412680:CDS | 20.0% |
| !! | TAGAAGAAAACAATTGTAAT+AGG | - | tig0023943:16942-16961 | Msa1412680:CDS | 20.0% |
| !!! | ATATTCTTTAGAATACATTG+TGG | - | tig0023943:16986-17005 | Msa1412680:CDS | 20.0% |
| !! | ATTTGGTTAACAGTTTAATA+AGG | + | tig0023943:17226-17245 | None:intergenic | 20.0% |
| !! | ATTTGGTTAACAGTTTAATA+AGG | + | tig0023943:17226-17245 | None:intergenic | 20.0% |
| !!! | TTTCATTTTTCTGTTTGTTT+GGG | + | tig0023943:17660-17679 | None:intergenic | 20.0% |
| !!! | ATTCATTGATAACTAAATCA+AGG | + | tig0023943:17961-17980 | None:intergenic | 20.0% |
| !! | TCAACAAAAAATAAAGTACA+AGG | + | tig0023943:18333-18352 | None:intergenic | 20.0% |
| !! | TTCATACAATATCATCTTAT+AGG | + | tig0023943:18519-18538 | None:intergenic | 20.0% |
| ! | TCAATGAACTCATACATATT+GGG | + | tig0023943:14215-14234 | None:intergenic | 25.0% |
| ! | TTCAATGAACTCATACATAT+TGG | + | tig0023943:14216-14235 | None:intergenic | 25.0% |
| !!! | AAGAAACAACTTTAGCTTTT+CGG | - | tig0023943:15310-15329 | Msa1412680:intron | 25.0% |
| ! | TGGATTATATCATTGAGATT+GGG | + | tig0023943:15351-15370 | None:intergenic | 25.0% |
| !!! | TGGTATCTTTGTTTTTTAAG+TGG | - | tig0023943:15389-15408 | Msa1412680:intron | 25.0% |
| ! | AAAAATCAGTGATGTCTTAA+TGG | - | tig0023943:15482-15501 | Msa1412680:intron | 25.0% |
| ! | AAAATCAGTGATGTCTTAAT+GGG | - | tig0023943:15483-15502 | Msa1412680:intron | 25.0% |
| ! | GAAAAATATTGAAGAAACTG+AGG | - | tig0023943:15534-15553 | Msa1412680:intron | 25.0% |
| ! | AAAGCAAATGGAAAATTGAA+AGG | + | tig0023943:15894-15913 | None:intergenic | 25.0% |
| !!! | GTTTTAATTAACTTTCAGCT+TGG | + | tig0023943:16002-16021 | None:intergenic | 25.0% |
| ! | AGTATAAAAGTAATCATCCA+AGG | - | tig0023943:16176-16195 | Msa1412680:intron | 25.0% |
| !!! | ATTATTTTAAAAAGGTGCCT+TGG | + | tig0023943:16196-16215 | None:intergenic | 25.0% |
| ! | CTTAATGTAATGTGGTATAT+GGG | + | tig0023943:16529-16548 | None:intergenic | 25.0% |
| ! | TGATTAATCATGTCTAAACA+AGG | + | tig0023943:16556-16575 | None:intergenic | 25.0% |
| ! | AAAGTTACTTGCAATCAAAA+GGG | - | tig0023943:16737-16756 | Msa1412680:intron | 25.0% |
| ! | GATAATGTTATTGCTTTCTT+TGG | + | tig0023943:16807-16826 | None:intergenic | 25.0% |
| !!! | AATTTGTTCGATTTTCAAGT+AGG | - | tig0023943:17061-17080 | Msa1412680:intron | 25.0% |
| ! | ACAGTTTAATAAGGTGTATT+TGG | + | tig0023943:17217-17236 | None:intergenic | 25.0% |
| ! | ACAGTTTAATAAGGTGTATT+TGG | + | tig0023943:17217-17236 | None:intergenic | 25.0% |
| ! | TACTTTATTATGGGTGTATT+TGG | + | tig0023943:17269-17288 | None:intergenic | 25.0% |
| ! | AAATACACCCATAATAAAGT+AGG | - | tig0023943:17268-17287 | Msa1412680:intron | 25.0% |
| ! | TATAGCTCCTACTTTATTAT+GGG | + | tig0023943:17278-17297 | None:intergenic | 25.0% |
| ! | TTATAGCTCCTACTTTATTA+TGG | + | tig0023943:17279-17298 | None:intergenic | 25.0% |
| ! | AATAAAGTAGGAGCTATAAT+AGG | - | tig0023943:17280-17299 | Msa1412680:intron | 25.0% |
| ! | TTGATAAAGTTGTATGAAAC+AGG | - | tig0023943:17312-17331 | Msa1412680:intron | 25.0% |
| ! | TGATAAAGTTGTATGAAACA+GGG | - | tig0023943:17313-17332 | Msa1412680:intron | 25.0% |
| !!! | GTTTTAATTAACTTGCAGTT+TGG | - | tig0023943:17562-17581 | Msa1412680:intron | 25.0% |
| !!! | CTTTCATTTTTCTGTTTGTT+TGG | + | tig0023943:17661-17680 | None:intergenic | 25.0% |
| ! | CAAACAAACAGAAAAATGAA+AGG | - | tig0023943:17659-17678 | Msa1412680:intron | 25.0% |
| ! | TCAAAAGTCGTTTATTTATG+AGG | + | tig0023943:18001-18020 | None:intergenic | 25.0% |
| !!! | TTTATTTTTTGTTGACTCTC+AGG | - | tig0023943:18338-18357 | Msa1412680:CDS | 25.0% |
| ! | ACAACAGAATTGTGTTAATT+TGG | - | tig0023943:18448-18467 | Msa1412680:CDS | 25.0% |
| !!! | TTAATTTGGCCATTTTTGTT+TGG | - | tig0023943:18462-18481 | Msa1412680:CDS | 25.0% |
| !! | TATTGATGACCAAACAAAAA+TGG | + | tig0023943:18474-18493 | None:intergenic | 25.0% |
| !! | ATTTTCTTTCTCGTTGTTTC+TGG | + | tig0023943:14022-14041 | None:intergenic | 30.0% |
| AAACAACGAGAAAGAAAATC+AGG | - | tig0023943:14023-14042 | Msa1412680:three_prime_UTR | 30.0% | |
| ATATGAATGAATCAATGAGC+AGG | - | tig0023943:14277-14296 | Msa1412680:exon | 30.0% | |
| TATGAATGAATCAATGAGCA+GGG | - | tig0023943:14278-14297 | Msa1412680:exon | 30.0% | |
| !! | TACTAACTTTAAGATGGTCA+GGG | + | tig0023943:14410-14429 | None:intergenic | 30.0% |
| !! | ATACTAACTTTAAGATGGTC+AGG | + | tig0023943:14411-14430 | None:intergenic | 30.0% |
| TAACCCTTGTAAAAGAAAAG+GGG | + | tig0023943:14441-14460 | None:intergenic | 30.0% | |
| GTAACCCTTGTAAAAGAAAA+GGG | + | tig0023943:14442-14461 | None:intergenic | 30.0% | |
| TGTAACCCTTGTAAAAGAAA+AGG | + | tig0023943:14443-14462 | None:intergenic | 30.0% | |
| ! | TAGATTAACCTCTGGTTTAT+AGG | - | tig0023943:14529-14548 | Msa1412680:intron | 30.0% |
| !! | TTTATCTTTTGTTGTGGAAG+CGG | + | tig0023943:14600-14619 | None:intergenic | 30.0% |
| !! | CTTATTTTCATAAACTCTCC+AGG | + | tig0023943:14673-14692 | None:intergenic | 30.0% |
| TCAAATACGTCCATTTGAAT+AGG | - | tig0023943:14785-14804 | Msa1412680:intron | 30.0% | |
| ATTGAGAAAGCCTATTCAAA+TGG | + | tig0023943:14798-14817 | None:intergenic | 30.0% | |
| ! | TATGAGAAAGCATACTCTAT+TGG | + | tig0023943:15101-15120 | None:intergenic | 30.0% |
| CTTTCTCATATTTATTGCCA+TGG | - | tig0023943:15111-15130 | Msa1412680:intron | 30.0% | |
| TTTGACAATGTCTATCTAGT+TGG | - | tig0023943:15228-15247 | Msa1412680:intron | 30.0% | |
| TTGACAATGTCTATCTAGTT+GGG | - | tig0023943:15229-15248 | Msa1412680:intron | 30.0% | |
| !! | AGTTGCTTGTTTCTAACTAT+AGG | + | tig0023943:15286-15305 | None:intergenic | 30.0% |
| CTGGATTATATCATTGAGAT+TGG | + | tig0023943:15352-15371 | None:intergenic | 30.0% | |
| !!! | TCTTTGTTTTTTAAGTGGAG+TGG | - | tig0023943:15394-15413 | Msa1412680:intron | 30.0% |
| TATGCTGAAAAACTTAGAAG+AGG | - | tig0023943:15664-15683 | Msa1412680:intron | 30.0% | |
| ! | TTGGATGTTTTCCTTTCTTA+CGG | + | tig0023943:15821-15840 | None:intergenic | 30.0% |
| ! | GAATTACATTTAGGGAGTTT+TGG | + | tig0023943:15840-15859 | None:intergenic | 30.0% |
| GACCAATGGAATTACATTTA+GGG | + | tig0023943:15848-15867 | None:intergenic | 30.0% | |
| TGACCAATGGAATTACATTT+AGG | + | tig0023943:15849-15868 | None:intergenic | 30.0% | |
| !! | GAAAATTGAAAGGCATTTGA+CGG | + | tig0023943:15884-15903 | None:intergenic | 30.0% |
| GAACTAAGTACATTGCAAAA+GGG | - | tig0023943:16057-16076 | Msa1412680:intron | 30.0% | |
| AACTAAGTACATTGCAAAAG+GGG | - | tig0023943:16058-16077 | Msa1412680:intron | 30.0% | |
| ! | AATTAGTTTGACATGGTTGT+GGG | + | tig0023943:16095-16114 | None:intergenic | 30.0% |
| ! | TAATTAGTTTGACATGGTTG+TGG | + | tig0023943:16096-16115 | None:intergenic | 30.0% |
| ! | AGTGCTATTATAACATAGAG+GGG | + | tig0023943:16119-16138 | None:intergenic | 30.0% |
| ! | GAGTGCTATTATAACATAGA+GGG | + | tig0023943:16120-16139 | None:intergenic | 30.0% |
| !! | GTTTTGATATTGCTTACACA+AGG | + | tig0023943:16148-16167 | None:intergenic | 30.0% |
| AACCAGAAAAAAATGTCTGA+GGG | + | tig0023943:16331-16350 | None:intergenic | 30.0% | |
| GAAATAGATACAGATTGAGT+TGG | + | tig0023943:16411-16430 | None:intergenic | 30.0% | |
| ! | TCTCTCTTCCTTTAATGTTT+TGG | - | tig0023943:16429-16448 | Msa1412680:intron | 30.0% |
| ! | CTCTCTTCCTTTAATGTTTT+GGG | - | tig0023943:16430-16449 | Msa1412680:intron | 30.0% |
| ! | TATAATTTGTAGAACGGTGT+TGG | + | tig0023943:16464-16483 | None:intergenic | 30.0% |
| ATGAATTCAATCATCAGCAA+CGG | - | tig0023943:16483-16502 | Msa1412680:intron | 30.0% | |
| CCTTAATGTAATGTGGTATA+TGG | + | tig0023943:16530-16549 | None:intergenic | 30.0% | |
| CCATATACCACATTACATTA+AGG | - | tig0023943:16527-16546 | Msa1412680:intron | 30.0% | |
| AAGGATACCTTAATGTAATG+TGG | + | tig0023943:16537-16556 | None:intergenic | 30.0% | |
| AACTAGAGCTTAAACAACTA+AGG | - | tig0023943:16585-16604 | Msa1412680:intron | 30.0% | |
| ATTGAAGCTGAAGATATAGA+TGG | + | tig0023943:16666-16685 | None:intergenic | 30.0% | |
| !! | GTATTTGATTTTCTAGGAGT+TGG | + | tig0023943:16707-16726 | None:intergenic | 30.0% |
| !! | GACAAGGTATTTGATTTTCT+AGG | + | tig0023943:16713-16732 | None:intergenic | 30.0% |
| GAAAGTTACTTGCAATCAAA+AGG | - | tig0023943:16736-16755 | Msa1412680:intron | 30.0% | |
| !! | TATAGATGGATTGGGTATTT+AGG | + | tig0023943:17121-17140 | None:intergenic | 30.0% |
| ! | TGTGTATGTATAGATGGATT+GGG | + | tig0023943:17129-17148 | None:intergenic | 30.0% |
| ATGTGTATGTATAGATGGAT+TGG | + | tig0023943:17130-17149 | None:intergenic | 30.0% | |
| AATCCATCTATACATACACA+TGG | - | tig0023943:17129-17148 | Msa1412680:intron | 30.0% | |
| ATTCCATGTGTATGTATAGA+TGG | + | tig0023943:17135-17154 | None:intergenic | 30.0% | |
| CATTTGATCATAAGCTATTG+TGG | + | tig0023943:17161-17180 | None:intergenic | 30.0% | |
| GATAAAGTTGTATGAAACAG+GGG | - | tig0023943:17314-17333 | Msa1412680:intron | 30.0% | |
| ATAAAGTTGTATGAAACAGG+GGG | - | tig0023943:17315-17334 | Msa1412680:intron | 30.0% | |
| ! | ATTTCTGTTTCTCAAATTGC+TGG | + | tig0023943:17402-17421 | None:intergenic | 30.0% |
| GCAATTTGAGAAACAGAAAT+CGG | - | tig0023943:17402-17421 | Msa1412680:intron | 30.0% | |
| CTTATCATAACTCATTTAGC+AGG | - | tig0023943:17444-17463 | Msa1412680:CDS | 30.0% | |
| ! | ACATACTTCTTGTTTGAGAT+TGG | + | tig0023943:17516-17535 | None:intergenic | 30.0% |
| TTCAAAATTGAAATCCACTC+TGG | + | tig0023943:17589-17608 | None:intergenic | 30.0% | |
| !! | GAAAAATGAAAGGCATTTGA+TGG | - | tig0023943:17669-17688 | Msa1412680:intron | 30.0% |
| TCCAAATTATTGTGTTTCGT+GGG | + | tig0023943:17826-17845 | None:intergenic | 30.0% | |
| AGAATAGCTCAACTGTTTAA+CGG | - | tig0023943:17890-17909 | Msa1412680:intron | 30.0% | |
| AATTTGTCAAAACACTACGA+AGG | + | tig0023943:17924-17943 | None:intergenic | 30.0% | |
| !! | TTTTTGGTCAGTAATTGGAA+TGG | + | tig0023943:18046-18065 | None:intergenic | 30.0% |
| !!! | TTGCATTTTTGGTCAGTAAT+TGG | + | tig0023943:18051-18070 | None:intergenic | 30.0% |
| GCACAGATTAATGTAACATA+TGG | + | tig0023943:18271-18290 | None:intergenic | 30.0% | |
| ATCATCTTATAGGCTATTAC+AGG | + | tig0023943:18509-18528 | None:intergenic | 30.0% | |
| GATGATATTGTATGAACTTC+TGG | - | tig0023943:18523-18542 | Msa1412680:CDS | 30.0% | |
| ATTGTATGAACTTCTGGTAA+TGG | - | tig0023943:18529-18548 | Msa1412680:intron | 30.0% | |
| TTGTATGAACTTCTGGTAAT+GGG | - | tig0023943:18530-18549 | Msa1412680:intron | 30.0% | |
| TAGAGCTTAGAACTAAGAAG+AGG | - | tig0023943:13746-13765 | Msa1412680:three_prime_UTR | 35.0% | |
| AACGTGTAACAGATTAGCAT+TGG | - | tig0023943:13980-13999 | Msa1412680:three_prime_UTR | 35.0% | |
| !! | CAAAAGTATCCTGAAGAACA+AGG | + | tig0023943:14163-14182 | None:intergenic | 35.0% |
| ! | TTTCCCCCTTTTCTTTTACA+AGG | - | tig0023943:14434-14453 | Msa1412680:CDS | 35.0% |
| ! | TTCCCCCTTTTCTTTTACAA+GGG | - | tig0023943:14435-14454 | Msa1412680:CDS | 35.0% |
| AACCCTTGTAAAAGAAAAGG+GGG | + | tig0023943:14440-14459 | None:intergenic | 35.0% | |
| ACGTATTTGACCTTATCTAC+TGG | + | tig0023943:14775-14794 | None:intergenic | 35.0% | |
| GAATAGGCTTTCTCAATTGA+AGG | - | tig0023943:14801-14820 | Msa1412680:intron | 35.0% | |
| TCTCAATTGAAGGAAGTGAA+TGG | - | tig0023943:14811-14830 | Msa1412680:intron | 35.0% | |
| !!! | TTTCTCTTTTTTACCTGACG+AGG | + | tig0023943:15026-15045 | None:intergenic | 35.0% |
| TGACAATGTCTATCTAGTTG+GGG | - | tig0023943:15230-15249 | Msa1412680:intron | 35.0% | |
| TTTATGTTGCTCGTACTTTG+TGG | - | tig0023943:15428-15447 | Msa1412680:intron | 35.0% | |
| AATCAGCACTGTAACTTGAT+GGG | + | tig0023943:15624-15643 | None:intergenic | 35.0% | |
| TAATCAGCACTGTAACTTGA+TGG | + | tig0023943:15625-15644 | None:intergenic | 35.0% | |
| ! | TGGATGTTTTCCTTTCTTAC+GGG | + | tig0023943:15820-15839 | None:intergenic | 35.0% |
| CTCCCTAAATGTAATTCCAT+TGG | - | tig0023943:15843-15862 | Msa1412680:intron | 35.0% | |
| TCCATTTGCTTTGTCTGAAA+TGG | - | tig0023943:15902-15921 | Msa1412680:intron | 35.0% | |
| TACTTCTCCTTGTTCAAAAC+TGG | - | tig0023943:16023-16042 | Msa1412680:intron | 35.0% | |
| GGAACTAAGTACATTGCAAA+AGG | - | tig0023943:16056-16075 | Msa1412680:intron | 35.0% | |
| ! | ATTAGTTTGACATGGTTGTG+GGG | + | tig0023943:16094-16113 | None:intergenic | 35.0% |
| ! | CGAGTGCTATTATAACATAG+AGG | + | tig0023943:16121-16140 | None:intergenic | 35.0% |
| TGATATTGCTTACACAAGGA+TGG | + | tig0023943:16144-16163 | None:intergenic | 35.0% | |
| GAACCAGAAAAAAATGTCTG+AGG | + | tig0023943:16332-16351 | None:intergenic | 35.0% | |
| AAACAACTAAGGTCAAGACT+TGG | - | tig0023943:16596-16615 | Msa1412680:intron | 35.0% | |
| !! | TTTGATTTTCTAGGAGTTGG+AGG | + | tig0023943:16704-16723 | None:intergenic | 35.0% |
| GCAAGTAACTTTCTTTGACA+AGG | + | tig0023943:16729-16748 | None:intergenic | 35.0% | |
| GTGTGTATAACCATAGTAAG+TGG | - | tig0023943:16759-16778 | Msa1412680:intron | 35.0% | |
| ! | AACTAGGTGCATTTTGCAAT+TGG | + | tig0023943:16851-16870 | None:intergenic | 35.0% |
| TTCTTAGTCATGTAGTCAGT+AGG | - | tig0023943:17085-17104 | Msa1412680:intron | 35.0% | |
| TCTTAGTCATGTAGTCAGTA+GGG | - | tig0023943:17086-17105 | Msa1412680:intron | 35.0% | |
| !! | AATGAAAGGCATTTGATGGA+AGG | - | tig0023943:17673-17692 | Msa1412680:intron | 35.0% |
| !! | ATGAAAGGCATTTGATGGAA+GGG | - | tig0023943:17674-17693 | Msa1412680:intron | 35.0% |
| GAAGGGTTGAAAATGACTAA+CGG | - | tig0023943:17691-17710 | Msa1412680:intron | 35.0% | |
| TTTAGTCCCTAAAAGTGACT+CGG | + | tig0023943:17775-17794 | None:intergenic | 35.0% | |
| GTCCAAATTATTGTGTTTCG+TGG | + | tig0023943:17827-17846 | None:intergenic | 35.0% | |
| ! | CTGCAAATTGGTTGCATTTT+TGG | + | tig0023943:18062-18081 | None:intergenic | 35.0% |
| GTACAAAGATAGAAGTCAAC+AGG | - | tig0023943:18095-18114 | Msa1412680:intron | 35.0% | |
| ! | TAACATGAATTGGTCTGTTG+CGG | + | tig0023943:18187-18206 | None:intergenic | 35.0% |
| TGAAACGCTCTAACATGAAT+TGG | + | tig0023943:18197-18216 | None:intergenic | 35.0% | |
| TGGCTGAATTGATACATTCT+TGG | + | tig0023943:18381-18400 | None:intergenic | 35.0% | |
| !! | ACTTCTGGTAATGGGTAAAT+AGG | - | tig0023943:18538-18557 | Msa1412680:intron | 35.0% |
| !! | GGTAATGGGTAAATAGGATT+CGG | - | tig0023943:18544-18563 | Msa1412680:intron | 35.0% |
| !! | GTAATGGGTAAATAGGATTC+GGG | - | tig0023943:18545-18564 | Msa1412680:intron | 35.0% |
| ! | TAATGGGTAAATAGGATTCG+GGG | - | tig0023943:18546-18565 | Msa1412680:intron | 35.0% |
| CACTAAAGAGTTGCTTGTTT+AGG | - | tig0023943:18624-18643 | Msa1412680:intron | 35.0% | |
| ATCATGGCATTAAGCTAACA+TGG | + | tig0023943:18741-18760 | None:intergenic | 35.0% | |
| TTAGCTTAATGCCATGATCT+GGG | - | tig0023943:18743-18762 | Msa1412680:exon | 35.0% | |
| ! | TTTCGGTAGTTTTTCCTTCG+CGG | + | tig0023943:13811-13830 | None:intergenic | 40.0% |
| GTTCTGTTGGAGTTCTCTTT+CGG | + | tig0023943:13828-13847 | None:intergenic | 40.0% | |
| GTTGTTTGGTTGAGATTGTG+GGG | + | tig0023943:13863-13882 | None:intergenic | 40.0% | |
| CGTTGTTTGGTTGAGATTGT+GGG | + | tig0023943:13864-13883 | None:intergenic | 40.0% | |
| TCGTTGTTTGGTTGAGATTG+TGG | + | tig0023943:13865-13884 | None:intergenic | 40.0% | |
| CTGAGATTGCTGTAAAGTGA+GGG | + | tig0023943:14060-14079 | None:intergenic | 40.0% | |
| TAAGGATGACCTTGTTCTTC+AGG | - | tig0023943:14151-14170 | Msa1412680:three_prime_UTR | 40.0% | |
| CAGGGTTAAGTATATTGAGC+AGG | - | tig0023943:14296-14315 | Msa1412680:CDS | 40.0% | |
| CAGGAATTAGCTAAGAAGAG+AGG | - | tig0023943:14315-14334 | Msa1412680:CDS | 40.0% | |
| GTGCAGTTTAGATTAACCTC+TGG | - | tig0023943:14521-14540 | Msa1412680:intron | 40.0% | |
| GTCAAACTCCTATAAACCAG+AGG | + | tig0023943:14540-14559 | None:intergenic | 40.0% | |
| !!! | GCTGTTTTTATAAGCGAACC+TGG | - | tig0023943:14652-14671 | Msa1412680:intron | 40.0% |
| ! | CATAAGCACTTGTGACTTGT+GGG | + | tig0023943:14752-14771 | None:intergenic | 40.0% |
| AGTGCTTATGCCAGTAGATA+AGG | - | tig0023943:14762-14781 | Msa1412680:intron | 40.0% | |
| CAGAAGAAAGCTCTACACAA+TGG | - | tig0023943:15048-15067 | Msa1412680:intron | 40.0% | |
| ATATTTATTGCCATGGCCCA+TGG | - | tig0023943:15118-15137 | Msa1412680:intron | 40.0% | |
| TATTTATTGCCATGGCCCAT+GGG | - | tig0023943:15119-15138 | Msa1412680:intron | 40.0% | |
| CAATGGCAAGATGAATCATC+TGG | + | tig0023943:15371-15390 | None:intergenic | 40.0% | |
| CAGATGATTCATCTTGCCAT+TGG | - | tig0023943:15369-15388 | Msa1412680:intron | 40.0% | |
| ! | CTTTTCCTGCAGAAGCTTTT+TGG | + | tig0023943:15563-15582 | None:intergenic | 40.0% |
| AAAAGCTTCTGCAGGAAAAG+AGG | - | tig0023943:15563-15582 | Msa1412680:intron | 40.0% | |
| !! | ACTTTTAGGGGCTTAAGTGA+AGG | + | tig0023943:15775-15794 | None:intergenic | 40.0% |
| !!! | ACACCACATGTCACTTTTAG+GGG | + | tig0023943:15787-15806 | None:intergenic | 40.0% |
| !!! | GACACCACATGTCACTTTTA+GGG | + | tig0023943:15788-15807 | None:intergenic | 40.0% |
| !!! | TGACACCACATGTCACTTTT+AGG | + | tig0023943:15789-15808 | None:intergenic | 40.0% |
| ! | GGATGTTTTCCTTTCTTACG+GGG | + | tig0023943:15819-15838 | None:intergenic | 40.0% |
| !! | TTGAAAGGCATTTGACGGAA+GGG | + | tig0023943:15879-15898 | None:intergenic | 40.0% |
| !! | ATTGAAAGGCATTTGACGGA+AGG | + | tig0023943:15880-15899 | None:intergenic | 40.0% |
| GCCATTTCAGACAAAGCAAA+TGG | + | tig0023943:15906-15925 | None:intergenic | 40.0% | |
| AATTGAAACCCACTCTAGCA+AGG | - | tig0023943:15975-15994 | Msa1412680:intron | 40.0% | |
| CTTGTTCAAAACTGGAAGCA+GGG | - | tig0023943:16031-16050 | Msa1412680:intron | 40.0% | |
| TAAGTACATTGCAAAAGGGG+CGG | - | tig0023943:16061-16080 | Msa1412680:intron | 40.0% | |
| ! | GAGGGGTAATTAGTTTGACA+TGG | + | tig0023943:16102-16121 | None:intergenic | 40.0% |
| CAGAAAAAAATGTCTGAGGG+TGG | + | tig0023943:16328-16347 | None:intergenic | 40.0% | |
| !!! | CACCCTCAGACATTTTTTTC+TGG | - | tig0023943:16326-16345 | Msa1412680:intron | 40.0% |
| CTGTCAGCCCAAAACATTAA+AGG | + | tig0023943:16440-16459 | None:intergenic | 40.0% | |
| TAGATGGTTTCGATCCATCA+GGG | + | tig0023943:16650-16669 | None:intergenic | 40.0% | |
| ATAGATGGTTTCGATCCATC+AGG | + | tig0023943:16651-16670 | None:intergenic | 40.0% | |
| TTGCAATTGGTTGGAGCAAA+TGG | + | tig0023943:16838-16857 | None:intergenic | 40.0% | |
| ! | AGGTGCATTTTGCAATTGGT+TGG | + | tig0023943:16847-16866 | None:intergenic | 40.0% |
| ATTTAGCAGGTTAACGTAGC+TGG | - | tig0023943:17457-17476 | Msa1412680:CDS | 40.0% | |
| !!! | TATGACACCGAGTCACTTTT+AGG | - | tig0023943:17765-17784 | Msa1412680:intron | 40.0% |
| !!! | ATGACACCGAGTCACTTTTA+GGG | - | tig0023943:17766-17785 | Msa1412680:intron | 40.0% |
| GCCCACGAAACACAATAATT+TGG | - | tig0023943:17822-17841 | Msa1412680:intron | 40.0% | |
| CTTCTATCTTTGTACAGCTC+AGG | + | tig0023943:18090-18109 | None:intergenic | 40.0% | |
| CAGTATAGGCCACAGTATAT+CGG | + | tig0023943:18423-18442 | None:intergenic | 40.0% | |
| ATATACTGTGGCCTATACTG+AGG | - | tig0023943:18423-18442 | Msa1412680:CDS | 40.0% | |
| TTCTGTTGTTGCCTCAGTAT+AGG | + | tig0023943:18437-18456 | None:intergenic | 40.0% | |
| AGAGCAAATAGCAGCTATTG+AGG | + | tig0023943:18707-18726 | None:intergenic | 40.0% | |
| ! | GTTAGCTTAATGCCATGATC+TGG | - | tig0023943:18742-18761 | Msa1412680:exon | 40.0% |
| GAGGAACAACAACACATCGA+TGG | - | tig0023943:13765-13784 | Msa1412680:three_prime_UTR | 45.0% | |
| ! | GATTGGTCGCATTGTTCTGT+TGG | + | tig0023943:13841-13860 | None:intergenic | 45.0% |
| TTGGTTGAGATTGTGGGGAT+TGG | + | tig0023943:13858-13877 | None:intergenic | 45.0% | |
| TCGTCATCGGAATCGTTGTT+TGG | + | tig0023943:13877-13896 | None:intergenic | 45.0% | |
| CCTTCTTTCGCTTTCGTCAT+CGG | + | tig0023943:13890-13909 | None:intergenic | 45.0% | |
| GCTGAGATTGCTGTAAAGTG+AGG | + | tig0023943:14061-14080 | None:intergenic | 45.0% | |
| ACTTTACAGCAATCTCAGCC+TGG | - | tig0023943:14062-14081 | Msa1412680:three_prime_UTR | 45.0% | |
| ! | GCCGTTGATAAGAACGATAC+CGG | - | tig0023943:14110-14129 | Msa1412680:three_prime_UTR | 45.0% |
| GCCGGTATCGTTCTTATCAA+CGG | + | tig0023943:14114-14133 | None:intergenic | 45.0% | |
| ! | GTTGATAAGAACGATACCGG+CGG | - | tig0023943:14113-14132 | Msa1412680:three_prime_UTR | 45.0% |
| ! | TGCTCAAGAAACCGCTGTTT+TGG | - | tig0023943:14181-14200 | Msa1412680:three_prime_UTR | 45.0% |
| GGGATCTTCATCCAAAACAG+CGG | + | tig0023943:14195-14214 | None:intergenic | 45.0% | |
| !! | TTAGTTTCTAGCAGCTCAGC+TGG | - | tig0023943:14486-14505 | Msa1412680:intron | 45.0% |
| TTGTGGAAGCGGCTTATTGT+CGG | + | tig0023943:14589-14608 | None:intergenic | 45.0% | |
| GCATAAGCACTTGTGACTTG+TGG | + | tig0023943:14753-14772 | None:intergenic | 45.0% | |
| TGTAAATCTTGTGCCTCGTC+AGG | - | tig0023943:15010-15029 | Msa1412680:intron | 45.0% | |
| AGCTCTACACAATGGACAAC+TGG | - | tig0023943:15056-15075 | Msa1412680:intron | 45.0% | |
| CTAACAGCAACTTTGCCCAT+GGG | + | tig0023943:15137-15156 | None:intergenic | 45.0% | |
| TCTAACAGCAACTTTGCCCA+TGG | + | tig0023943:15138-15157 | None:intergenic | 45.0% | |
| TCTGCAGGAAAAGAGGCTTA+TGG | - | tig0023943:15570-15589 | Msa1412680:intron | 45.0% | |
| CAGGAAAAGAGGCTTATGGT+GGG | - | tig0023943:15574-15593 | Msa1412680:intron | 45.0% | |
| !! | AGTGCTGATTATTTCCAGCG+TGG | - | tig0023943:15634-15653 | Msa1412680:intron | 45.0% |
| TGATTATTTCCAGCGTGGCA+GGG | - | tig0023943:15639-15658 | Msa1412680:intron | 45.0% | |
| AAGCCCCTAAAAGTGACATG+TGG | - | tig0023943:15781-15800 | Msa1412680:intron | 45.0% | |
| GAAGGGACGAAAATGACCAA+TGG | + | tig0023943:15862-15881 | None:intergenic | 45.0% | |
| !!! | CCTGCTTCCAGTTTTGAACA+AGG | + | tig0023943:16033-16052 | None:intergenic | 45.0% |
| CCTTGTTCAAAACTGGAAGC+AGG | - | tig0023943:16030-16049 | Msa1412680:intron | 45.0% | |
| TTCAAAACTGGAAGCAGGGA+TGG | - | tig0023943:16035-16054 | Msa1412680:intron | 45.0% | |
| AAACATCAGCCTTCCAGTCA+GGG | + | tig0023943:16358-16377 | None:intergenic | 45.0% | |
| AAAACATCAGCCTTCCAGTC+AGG | + | tig0023943:16359-16378 | None:intergenic | 45.0% | |
| GGGTTAATCGTCTTGCAGAA+TGG | + | tig0023943:16630-16649 | None:intergenic | 45.0% | |
| TGCAAGACGATTAACCCTGA+TGG | - | tig0023943:16633-16652 | Msa1412680:intron | 45.0% | |
| CGAAGTCGTTCCACTTACTA+TGG | + | tig0023943:16772-16791 | None:intergenic | 45.0% | |
| TGAGAAACAGAAATCGGCAG+TGG | - | tig0023943:17408-17427 | Msa1412680:intron | 45.0% | |
| GCTCAGGATGTTCTGCAAAT+TGG | + | tig0023943:18074-18093 | None:intergenic | 45.0% | |
| !! | ACTGCTGGACTCGTTTTGTT+TGG | + | tig0023943:18136-18155 | None:intergenic | 45.0% |
| !! | ATAGGATTCGGGGCTTTGTT+AGG | - | tig0023943:18556-18575 | Msa1412680:intron | 45.0% |
| GCAAATAGCAACCCAGATCA+TGG | + | tig0023943:18757-18776 | None:intergenic | 45.0% | |
| !!! | TTTTTAAAAATTTATATGAA+TGG | - | tig0023943:14979-14998 | Msa1412680:intron | 5.0% |
| !!! | ACTAAAATATTATTTTAAAA+AGG | + | tig0023943:16204-16223 | None:intergenic | 5.0% |
| CCGATGACGAAAGCGAAAGA+AGG | - | tig0023943:13887-13906 | Msa1412680:three_prime_UTR | 50.0% | |
| GCTGTAAAGTGAGGGTTGCA+GGG | + | tig0023943:14052-14071 | None:intergenic | 50.0% | |
| TGCTGTAAAGTGAGGGTTGC+AGG | + | tig0023943:14053-14072 | None:intergenic | 50.0% | |
| TCTCAGCCTGGAATTTCCAG+CGG | - | tig0023943:14074-14093 | Msa1412680:three_prime_UTR | 50.0% | |
| GCTAAACCGCTGGAAATTCC+AGG | + | tig0023943:14083-14102 | None:intergenic | 50.0% | |
| GCAGGAAAAGAGGCTTATGG+TGG | - | tig0023943:15573-15592 | Msa1412680:intron | 50.0% | |
| CTGATTATTTCCAGCGTGGC+AGG | - | tig0023943:15638-15657 | Msa1412680:intron | 50.0% | |
| CATACTGCTCCCCGTAAGAA+AGG | - | tig0023943:15807-15826 | Msa1412680:intron | 50.0% | |
| AGCTTGGTCCTTGCTAGAGT+GGG | + | tig0023943:15986-16005 | None:intergenic | 50.0% | |
| ACTTGCAGTTTGGTCCAGAG+TGG | - | tig0023943:17572-17591 | Msa1412680:intron | 50.0% | |
| AACGAGAACGTCACCGTGTT+CGG | - | tig0023943:18220-18239 | Msa1412680:intron | 50.0% | |
| ACAGTATATCGGACGCTGCT+CGG | + | tig0023943:18412-18431 | None:intergenic | 50.0% | |
| CGAAACAAGAGAAGCCGCGA+AGG | - | tig0023943:13794-13813 | Msa1412680:three_prime_UTR | 55.0% | |
| ! | GGCTTTAGCAGCTAAACCGC+TGG | + | tig0023943:14093-14112 | None:intergenic | 55.0% |
| GATAAGAACGATACCGGCGG+TGG | - | tig0023943:14116-14135 | Msa1412680:three_prime_UTR | 55.0% | |
| !! | GTTTCTAGCAGCTCAGCTGG+TGG | - | tig0023943:14489-14508 | Msa1412680:intron | 55.0% |
| GGCTGCCAAAAAGCTTCTGC+AGG | - | tig0023943:15555-15574 | Msa1412680:intron | 55.0% | |
| CAGCTTGGTCCTTGCTAGAG+TGG | + | tig0023943:15987-16006 | None:intergenic | 55.0% | |
| !! | TTTCTGGTTCCGTCCCTGAC+TGG | - | tig0023943:16342-16361 | Msa1412680:intron | 55.0% |
| ATCAGCCTTCCAGTCAGGGA+CGG | + | tig0023943:16354-16373 | None:intergenic | 55.0% | |
| ATGCTCCTGGAGCAGTACAG+AGG | - | tig0023943:18157-18176 | Msa1412680:CDS | 55.0% | |
| GAGCAGCGTCCGATATACTG+TGG | - | tig0023943:18411-18430 | Msa1412680:CDS | 55.0% | |
| CGGTGGCGATGGAGCTGATA+AGG | - | tig0023943:14133-14152 | Msa1412680:three_prime_UTR | 60.0% | |
| GCAACTTTGCCCATGGGCCA+TGG | + | tig0023943:15131-15150 | None:intergenic | 60.0% | |
| CAGCATAATCCCTGCCACGC+TGG | + | tig0023943:15651-15670 | None:intergenic | 60.0% | |
| TGGTTCCGTCCCTGACTGGA+AGG | - | tig0023943:16346-16365 | Msa1412680:intron | 60.0% | |
| GAGTCCAGCAGTGATGCTCC+TGG | - | tig0023943:18144-18163 | Msa1412680:CDS | 60.0% | |
| !! | TGCTCCAGGAGCATCACTGC+TGG | + | tig0023943:18151-18170 | None:intergenic | 60.0% |
| TCCTGGAGCAGTACAGAGGC+AGG | - | tig0023943:18161-18180 | Msa1412680:CDS | 60.0% | |
| GACGCTGCTCGGCTATGCTT+TGG | + | tig0023943:18401-18420 | None:intergenic | 60.0% | |
| AACGATACCGGCGGTGGCGA+TGG | - | tig0023943:14122-14141 | Msa1412680:three_prime_UTR | 65.0% | |
| ATCAGCTCCATCGCCACCGC+CGG | + | tig0023943:14132-14151 | None:intergenic | 65.0% | |
| GCCTGCCTCTGTACTGCTCC+AGG | + | tig0023943:18165-18184 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0023943 | gene | 13744 | 18793 | 13744 | ID=Msa1412680;Name=Msa1412680 |
| tig0023943 | mRNA | 13744 | 18793 | 13744 | ID=Msa1412680-mRNA-1;Parent=Msa1412680;Name=Msa1412680-mRNA-1;_AED=0.03;_eAED=0.03;_QI=40|1|1|1|1|1|6|545|292 |
| tig0023943 | exon | 13744 | 14455 | 13744 | ID=Msa1412680-mRNA-1:exon:20756;Parent=Msa1412680-mRNA-1 |
| tig0023943 | exon | 16852 | 17012 | 16852 | ID=Msa1412680-mRNA-1:exon:20755;Parent=Msa1412680-mRNA-1 |
| tig0023943 | exon | 17432 | 17505 | 17432 | ID=Msa1412680-mRNA-1:exon:20754;Parent=Msa1412680-mRNA-1 |
| tig0023943 | exon | 18115 | 18238 | 18115 | ID=Msa1412680-mRNA-1:exon:20753;Parent=Msa1412680-mRNA-1 |
| tig0023943 | exon | 18318 | 18545 | 18318 | ID=Msa1412680-mRNA-1:exon:20752;Parent=Msa1412680-mRNA-1 |
| tig0023943 | exon | 18629 | 18793 | 18629 | ID=Msa1412680-mRNA-1:exon:20751;Parent=Msa1412680-mRNA-1 |
| tig0023943 | five_prime_UTR | 18754 | 18793 | 18754 | ID=Msa1412680-mRNA-1:five_prime_utr;Parent=Msa1412680-mRNA-1 |
| tig0023943 | CDS | 18629 | 18753 | 18629 | ID=Msa1412680-mRNA-1:cds;Parent=Msa1412680-mRNA-1 |
| tig0023943 | CDS | 18318 | 18545 | 18318 | ID=Msa1412680-mRNA-1:cds;Parent=Msa1412680-mRNA-1 |
| tig0023943 | CDS | 18115 | 18238 | 18115 | ID=Msa1412680-mRNA-1:cds;Parent=Msa1412680-mRNA-1 |
| tig0023943 | CDS | 17432 | 17505 | 17432 | ID=Msa1412680-mRNA-1:cds;Parent=Msa1412680-mRNA-1 |
| tig0023943 | CDS | 16852 | 17012 | 16852 | ID=Msa1412680-mRNA-1:cds;Parent=Msa1412680-mRNA-1 |
| tig0023943 | CDS | 14289 | 14455 | 14289 | ID=Msa1412680-mRNA-1:cds;Parent=Msa1412680-mRNA-1 |
| tig0023943 | three_prime_UTR | 13744 | 14288 | 13744 | ID=Msa1412680-mRNA-1:three_prime_utr;Parent=Msa1412680-mRNA-1 |
| Gene Sequence |
| Protein sequence |
