AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1413950

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1413950 MtrunA17_Chr1g0203871 96.548 869 30 0 1 869 185 1053 0.0 1745
Msa1413950 MtrunA17_Chr6g0460871 36.678 897 461 23 1 867 158 977 7.77e-180 544
Msa1413950 MtrunA17_Chr2g0295941 23.801 563 350 18 174 712 415 922 1.59e-28 123
Msa1413950 MtrunA17_Chr4g0039191 23.408 581 367 20 184 741 340 865 1.48e-23 107
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1413950 AT1G14610.1 71.810 862 236 3 1 855 223 1084 0.0 1342
Msa1413950 AT5G16715.1 38.279 883 442 21 2 861 155 957 0.0 553
Msa1413950 AT1G27160.1 56.875 160 57 3 624 776 11 165 1.64e-53 185
Msa1413950 AT5G49030.3 24.368 554 358 15 174 712 613 1120 2.31e-32 136
Msa1413950 AT5G49030.1 24.368 554 358 15 174 712 427 934 2.57e-32 136
Msa1413950 AT5G49030.2 24.368 554 358 15 174 712 427 934 4.87e-32 135
Msa1413950 AT4G10320.1 22.249 827 499 29 3 741 93 863 5.82e-26 115

Find 235 sgRNAs with CRISPR-Local

Find 461 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAATCTATTGTTATGATATT+TGG 0.057547 tig0024078:+7561 Msa1413950:three_prime_UTR
TACAGGAACTTCACAATTTA+TGG 0.093646 tig0024078:+7484 Msa1413950:three_prime_UTR
GAAATTGAAGCTGATCTTTC+TGG 0.115651 tig0024078:+6837 Msa1413950:CDS
TTTGGACATGCCTCGATTTA+AGG 0.131070 tig0024078:+2853 Msa1413950:CDS
GGAATCTTTCTGCCATTAAA+TGG 0.153103 tig0024078:-2568 None:intergenic
TATGCTGTTCACCCATTTAA+TGG 0.188496 tig0024078:+2556 Msa1413950:CDS
CACAATTTATGGCCTCATTT+TGG 0.196769 tig0024078:+7495 Msa1413950:three_prime_UTR
ATGGCAACAGCTAGTTCTTT+AGG 0.206093 tig0024078:-5432 None:intergenic
TACGACAAACCTGTTGAATT+TGG 0.241657 tig0024078:+2391 Msa1413950:CDS
AGTATCCACTGGCAGCTAAA+TGG 0.249493 tig0024078:-5774 None:intergenic
TACTATGAAGTTTCACTTAC+AGG 0.252388 tig0024078:+7467 Msa1413950:three_prime_UTR
CGCAAGATGTCCAAGTCTTT+GGG 0.270359 tig0024078:+5327 Msa1413950:CDS
CAAGCAACAAACGCTTCTTT+AGG 0.276874 tig0024078:-7359 None:intergenic
CAATCAGCCACATATTGTTT+TGG 0.283513 tig0024078:-3735 None:intergenic
TTCTGCTCTCTTACATTCCC+TGG 0.286214 tig0024078:-6075 None:intergenic
AATCTATTGTTATGATATTT+GGG 0.294728 tig0024078:+7562 Msa1413950:three_prime_UTR
TCTGTTCCCTTTGACTGTAC+TGG 0.303531 tig0024078:+4798 Msa1413950:CDS
ACGCAAGATGTCCAAGTCTT+TGG 0.303673 tig0024078:+5326 Msa1413950:CDS
TGGCAACAGCTAGTTCTTTA+GGG 0.315037 tig0024078:-5431 None:intergenic
CAGCTAAATGGGAGATTATC+TGG 0.323237 tig0024078:-5762 None:intergenic
AATCCGGGACCCTGACGTTC+TGG 0.330214 tig0024078:+4756 Msa1413950:CDS
AAGCAACAAACGCTTCTTTA+GGG 0.330590 tig0024078:-7358 None:intergenic
GAAAGAAGTTTCATTTAATC+CGG 0.335331 tig0024078:+4740 Msa1413950:CDS
AGCAACCTCACCTTGCTAAA+AGG 0.336305 tig0024078:-4949 None:intergenic
TGACATACCATGCAGGAATT+TGG 0.347409 tig0024078:-4612 None:intergenic
CTACCACTGCTGTGTATTCT+TGG 0.350432 tig0024078:+5862 Msa1413950:CDS
AGACTTGGTTACTTTCGATA+TGG 0.352174 tig0024078:-5814 None:intergenic
TTGCAACAATTACGTCGATT+AGG 0.353940 tig0024078:+912 Msa1413950:CDS
GCCAATGGTGCAATAAACTA+TGG 0.355090 tig0024078:+5676 Msa1413950:CDS
AGAATAGCATCACATATTAT+AGG 0.358451 tig0024078:-2589 None:intergenic
TGTTCGTAACGTTTATCTTC+AGG 0.360246 tig0024078:-2520 None:intergenic
TACCATTGTGGCTTTATCAT+TGG 0.361784 tig0024078:-3636 None:intergenic
TCCATGTGCATCACGAATCA+TGG 0.362620 tig0024078:-5304 None:intergenic
GTCCTTCTTCTGACCCTCTA+TGG 0.364359 tig0024078:-5451 None:intergenic
AAACGTTACGAACAATTTCA+TGG 0.369062 tig0024078:+2529 Msa1413950:CDS
GAAACTCACAAGACATGATC+TGG 0.369962 tig0024078:+721 Msa1413950:CDS
GAGACGTACGGTTAGTGAAT+TGG 0.374358 tig0024078:+2210 Msa1413950:intron
ATTCTTGTTGATCCAAAGTT+CGG 0.375321 tig0024078:+2607 Msa1413950:CDS
TCCGTGACAAAAGGCATAAA+AGG 0.380847 tig0024078:-6026 None:intergenic
TGCATGGTATGTCACTTTAG+AGG 0.385125 tig0024078:+4621 Msa1413950:CDS
CAAAACAATATGTGGCTGAT+TGG 0.388450 tig0024078:+3736 Msa1413950:CDS
TTATCTGGAGTCAAATTTGC+AGG 0.390228 tig0024078:-5747 None:intergenic
GGATGATGTACTGCAGGAAT+TGG 0.393404 tig0024078:+4642 Msa1413950:CDS
CCTCAAAATCATTGGGATCA+TGG 0.394187 tig0024078:-2751 None:intergenic
TTCTTGTTGATCCAAAGTTC+GGG 0.397342 tig0024078:+2608 Msa1413950:CDS
GAGAGGAGTATGAATGTTCC+AGG 0.397987 tig0024078:+7279 Msa1413950:CDS
AGACGTACGGTTAGTGAATT+GGG 0.398274 tig0024078:+2211 Msa1413950:CDS
CTGTTCCCTTTGACTGTACT+GGG 0.401639 tig0024078:+4799 Msa1413950:CDS
CCACATTCCTCGATACCATT+TGG 0.404000 tig0024078:-5477 None:intergenic
ACTTCTTTCCATGATACCTT+TGG 0.404894 tig0024078:-4726 None:intergenic
TCAACAGGTTTGTCGTATCC+TGG 0.406591 tig0024078:-2385 None:intergenic
TTCATGTAGGGTCTTTATAG+AGG 0.408155 tig0024078:+3555 Msa1413950:intron
TTTAAAACTCCAAATTCAAC+AGG 0.409165 tig0024078:-2400 None:intergenic
AACCATGTATCCAGAACGTC+AGG 0.414020 tig0024078:-4766 None:intergenic
GCGTTTGTTGCTTGAGGAAA+CGG 0.416697 tig0024078:+7368 Msa1413950:CDS
GTTGCTCGTATGGTTATGTT+AGG 0.417546 tig0024078:+4904 Msa1413950:CDS
GGTTATGTTAGGAATGAAGT+TGG 0.418816 tig0024078:+4915 Msa1413950:CDS
CTCAAGTCGTCTGTGTCATC+AGG 0.421978 tig0024078:-4826 None:intergenic
GTGTTGCAATCTCCAGTTGA+TGG 0.423671 tig0024078:-6649 None:intergenic
GATTATTAACAGCCATCAAC+TGG 0.423925 tig0024078:+6637 Msa1413950:CDS
TCCATAGTTTATTGCACCAT+TGG 0.424169 tig0024078:-5677 None:intergenic
CGTATCCTGGAACCTTTAGT+AGG 0.424339 tig0024078:-2372 None:intergenic
GCTCTCCCAACGTTACGTTT+AGG 0.425875 tig0024078:+7652 Msa1413950:three_prime_UTR
ACTGCACCTGTCCCGAACTT+TGG 0.426283 tig0024078:-2619 None:intergenic
GTATCCACTGGCAGCTAAAT+GGG 0.428587 tig0024078:-5773 None:intergenic
CAACCACCCTTTGAATATCT+AGG 0.430230 tig0024078:-5647 None:intergenic
ACAAGCTAGACCGTATCTAT+AGG 0.433169 tig0024078:+1343 Msa1413950:CDS
TTTCCAACCTCAAAATCATT+GGG 0.434718 tig0024078:-2758 None:intergenic
GATCCCATTGAGGTGATAAA+CGG 0.435011 tig0024078:+5360 Msa1413950:CDS
TGAAAACGTTAATAAATTCA+AGG 0.435956 tig0024078:-2790 None:intergenic
ACCCTGACGTTCTGGATACA+TGG 0.439141 tig0024078:+4764 Msa1413950:CDS
ATCCCGTTTATCACCTCAAT+GGG 0.439700 tig0024078:-5363 None:intergenic
CACAATTCTTCCGTGACAAA+AGG 0.441108 tig0024078:-6035 None:intergenic
CCAGTTTCCAAAACAGAAGT+TGG 0.442158 tig0024078:-4859 None:intergenic
CGTCTTTCAGAAGGAAAGTT+GGG 0.443739 tig0024078:-5948 None:intergenic
AATGGATGACAAGAGATCTA+AGG 0.444070 tig0024078:+1293 Msa1413950:CDS
AGGACCCTACTAAAGGTTCC+AGG 0.446579 tig0024078:+2367 Msa1413950:CDS
ACGTCGATTAGGAGCATCTC+TGG 0.449050 tig0024078:+923 Msa1413950:CDS
GAATCTTTCTGCCATTAAAT+GGG 0.449504 tig0024078:-2567 None:intergenic
CCTTTGGTTAGCCTCATCTC+TGG 0.454640 tig0024078:-4710 None:intergenic
GTTATGTTAGGAATGAAGTT+GGG 0.455590 tig0024078:+4916 Msa1413950:CDS
CTCGTACAATTCTAGAGACT+TGG 0.457664 tig0024078:-5829 None:intergenic
GGTCTACATACAAGGTTAGA+AGG 0.458394 tig0024078:+5396 Msa1413950:CDS
TAGATATTCAAAGGGTGGTT+GGG 0.464574 tig0024078:+5649 Msa1413950:CDS
AACTTGTTTGTCCTCGTTGG+AGG 0.465247 tig0024078:+7628 Msa1413950:three_prime_UTR
CTCAAAATCATTGGGATCAT+GGG 0.466731 tig0024078:-2750 None:intergenic
TCTCTTTAACCACATGTGTT+CGG 0.471314 tig0024078:-6616 None:intergenic
AATTTGCAGTATTGACTTTG+AGG 0.471574 tig0024078:-7600 None:intergenic
CGTTTGTTGCTTGAGGAAAC+GGG 0.473518 tig0024078:+7369 Msa1413950:CDS
AATTCTGAAGATGCTAGGCT+TGG 0.478510 tig0024078:+6918 Msa1413950:CDS
ATCCCATTGAGGTGATAAAC+GGG 0.482225 tig0024078:+5361 Msa1413950:CDS
GAGGCTAACCAAAGGTATCA+TGG 0.484629 tig0024078:+4718 Msa1413950:CDS
CCGTCTTTCAGAAGGAAAGT+TGG 0.484677 tig0024078:-5949 None:intergenic
ACGATTTGCCATGAGCAAGC+TGG 0.486673 tig0024078:+5707 Msa1413950:CDS
TATCCCGTTTATCACCTCAA+TGG 0.488966 tig0024078:-5364 None:intergenic
ATAAACGGGATAACACTAGA+AGG 0.490277 tig0024078:+5375 Msa1413950:CDS
GGTTTGCTCAAGACACTTTG+TGG 0.490582 tig0024078:+5970 Msa1413950:CDS
GTAAACTTGTTTGTCCTCGT+TGG 0.492078 tig0024078:+7625 Msa1413950:three_prime_UTR
ACATGCCTCGATTTAAGGCT+CGG 0.497314 tig0024078:+2858 Msa1413950:CDS
CAGCTAGTTCTTTAGGGTCA+AGG 0.499517 tig0024078:-5425 None:intergenic
GTGAAACTTCATAGTACTGA+TGG 0.499939 tig0024078:-7460 None:intergenic
GAAGCTCTAAATACACAGAA+AGG 0.500453 tig0024078:-6887 None:intergenic
CACTAGAAGGTCTACATACA+AGG 0.501510 tig0024078:+5388 Msa1413950:CDS
CGATTTGCCATGAGCAAGCT+GGG 0.503602 tig0024078:+5708 Msa1413950:CDS
CTAAATAAAGCTTATAGTGT+AGG 0.506543 tig0024078:-7522 None:intergenic
CACCTAGGTTCCCTTCCAAA+GGG 0.510524 tig0024078:-2435 None:intergenic
TGTAAAAGCAGGTTTGGGAA+TGG 0.510887 tig0024078:+865 Msa1413950:intron
CCATGTGCATCACGAATCAT+GGG 0.513007 tig0024078:-5303 None:intergenic
CAAGGTGTATTACAGATGGC+TGG 0.513148 tig0024078:+4543 Msa1413950:intron
GGCCATCCCAGTACAGTCAA+AGG 0.513909 tig0024078:-4805 None:intergenic
AATAACAGAAGCATTACAAA+AGG 0.514652 tig0024078:+2886 Msa1413950:CDS
AAAGAAGCGTTTGTTGCTTG+AGG 0.515163 tig0024078:+7362 Msa1413950:CDS
AAAGAAGTTTCATTTAATCC+GGG 0.515836 tig0024078:+4741 Msa1413950:CDS
GTTGATCCAAAGTTCGGGAC+AGG 0.516831 tig0024078:+2613 Msa1413950:CDS
CTCATTGTTGCAGAGACGTA+CGG 0.517701 tig0024078:+2198 Msa1413950:intron
GAAAATAACGAGATGCGCCT+TGG 0.518115 tig0024078:+3582 Msa1413950:CDS
ATTTGCAGTATTGACTTTGA+GGG 0.518156 tig0024078:-7599 None:intergenic
TCCCTTTGACTGTACTGGGA+TGG 0.518559 tig0024078:+4803 Msa1413950:CDS
CTAGATATTCAAAGGGTGGT+TGG 0.519304 tig0024078:+5648 Msa1413950:CDS
AATAACATTCCCCAAAGACT+TGG 0.519876 tig0024078:-5337 None:intergenic
TTTAACCTAAACGTAACGTT+GGG 0.520063 tig0024078:-7657 None:intergenic
GGGTGCGTACAATGACCATT+GGG 0.520197 tig0024078:+4663 Msa1413950:CDS
TCACCTAGGTTCCCTTCCAA+AGG 0.520353 tig0024078:-2436 None:intergenic
GGCAACGCCTTCCTTCGCCC+AGG 0.522639 tig0024078:+6057 Msa1413950:CDS
CCACTGCTGTGTATTCTTGG+TGG 0.523958 tig0024078:+5865 Msa1413950:CDS
TGTTCGACTTACAGTAAAAG+AGG 0.524760 tig0024078:-6684 None:intergenic
GATTAGGAGCATCTCTGGAT+TGG 0.525106 tig0024078:+928 Msa1413950:CDS
TGGGTGCGTACAATGACCAT+TGG 0.525893 tig0024078:+4662 Msa1413950:CDS
TCTGCTCTCTTACATTCCCT+GGG 0.526407 tig0024078:-6074 None:intergenic
GAACTAGCTGTTGCCATAGA+GGG 0.528109 tig0024078:+5438 Msa1413950:CDS
TCTTCATGCTGTCACGGATG+AGG 0.529386 tig0024078:+3689 Msa1413950:CDS
TTTAGAGGATGATGTACTGC+AGG 0.530352 tig0024078:+4636 Msa1413950:CDS
TATCCAGAACGTCAGGGTCC+CGG 0.531929 tig0024078:-4759 None:intergenic
AAATTTGCATACCCTTTGGA+AGG 0.532012 tig0024078:+2424 Msa1413950:CDS
AAAAGAAAGGACCCTACTAA+AGG 0.533218 tig0024078:+2360 Msa1413950:CDS
GGATCACTGCCAGAAAAGTA+AGG 0.533229 tig0024078:-5927 None:intergenic
CCAACTTTCCTTCTGAAAGA+CGG 0.533799 tig0024078:+5949 Msa1413950:CDS
CAATTAATTCTGAAGATGCT+AGG 0.534014 tig0024078:+6913 Msa1413950:CDS
CAGAAGAAGGACTTTCCAAA+TGG 0.535680 tig0024078:+5462 Msa1413950:CDS
GCATTTCACGACAGCTATGG+TGG 0.536878 tig0024078:+4584 Msa1413950:CDS
TGCTCTCTGCCGAACACATG+TGG 0.537802 tig0024078:+6607 Msa1413950:CDS
CTCTTACATTCCCTGGGCGA+AGG 0.538751 tig0024078:-6068 None:intergenic
GGCTGGAAAACATTCGTGAT+TGG 0.542932 tig0024078:+4560 Msa1413950:CDS
TGATGACACAGACGACTTGA+GGG 0.543174 tig0024078:+4828 Msa1413950:CDS
AGAACTAGCTGTTGCCATAG+AGG 0.544850 tig0024078:+5437 Msa1413950:CDS
TGAGCAAACCGTCTTTCAGA+AGG 0.546144 tig0024078:-5957 None:intergenic
TACATTCCCTGGGCGAAGGA+AGG 0.546193 tig0024078:-6064 None:intergenic
GGTGCATTTCACGACAGCTA+TGG 0.548304 tig0024078:+4581 Msa1413950:CDS
CATGCCTCGATTTAAGGCTC+GGG 0.551078 tig0024078:+2859 Msa1413950:CDS
CTGATGACACAGACGACTTG+AGG 0.551100 tig0024078:+4827 Msa1413950:CDS
GAGATCTAAGGCTGTAACAG+AGG 0.551509 tig0024078:+1305 Msa1413950:CDS
TGCCATAGAGGGTCAGAAGA+AGG 0.552277 tig0024078:+5449 Msa1413950:CDS
TGTATGAGACCAGCGCAAAA+CGG 0.552687 tig0024078:-5512 None:intergenic
GGAGGCTCTTCATGCTGTCA+CGG 0.553142 tig0024078:+3683 Msa1413950:CDS
GATTATTCCAAAACAATATG+TGG 0.553287 tig0024078:+3728 Msa1413950:CDS
CATTTCACGACAGCTATGGT+GGG 0.554344 tig0024078:+4585 Msa1413950:CDS
GCCATCCCAGTACAGTCAAA+GGG 0.554762 tig0024078:-4804 None:intergenic
AAATTAACCTAGATATTCAA+AGG 0.556368 tig0024078:+5640 Msa1413950:CDS
ATCCACCTCACCTATAGATA+CGG 0.556874 tig0024078:-1353 None:intergenic
AAATTGTTGTTGCCACAACT+AGG 0.557967 tig0024078:+2458 Msa1413950:CDS
TACGGCAGTATCTGATATTG+AGG 0.558111 tig0024078:+2247 Msa1413950:CDS
ATCATCTCCCAGCTTGCTCA+TGG 0.558192 tig0024078:-5715 None:intergenic
ACAAATTCAATCGAAGAATG+AGG 0.559500 tig0024078:+7323 Msa1413950:CDS
TGTTAAGTCTATCAGATCAC+TGG 0.560182 tig0024078:+6420 Msa1413950:CDS
CATAGTTTCAATCCTAGTTG+TGG 0.560304 tig0024078:-2470 None:intergenic
GCAACGCCTTCCTTCGCCCA+GGG 0.564843 tig0024078:+6058 Msa1413950:CDS
GATGATGTACTGCAGGAATT+GGG 0.569423 tig0024078:+4643 Msa1413950:CDS
GTTCGGGACAGGTGCAGTGA+AGG 0.570638 tig0024078:+2624 Msa1413950:CDS
GAAACGTTCTCTTTATAACC+TGG 0.571595 tig0024078:-7297 None:intergenic
TTATTATGTGCAGGTAGTTG+TGG 0.572451 tig0024078:+676 None:intergenic
GCTGGTCTCATACACAGCTC+AGG 0.573991 tig0024078:+5521 Msa1413950:CDS
ACTAGGATTGAAACTATGCT+TGG 0.574325 tig0024078:+2475 Msa1413950:CDS
AAATCATTGGGATCATGGGC+CGG 0.574958 tig0024078:-2746 None:intergenic
GTACAATGACCATTGGGTAG+TGG 0.575801 tig0024078:+4669 Msa1413950:CDS
GTATCCTGGAACCTTTAGTA+GGG 0.577632 tig0024078:-2371 None:intergenic
AAACTAACCTCTGTAGCGGA+TGG 0.580456 tig0024078:-6119 None:intergenic
GGGTGGTTGGGTATCGCCAA+TGG 0.581037 tig0024078:+5661 Msa1413950:CDS
AATTTGCATACCCTTTGGAA+GGG 0.584345 tig0024078:+2425 Msa1413950:CDS
GGAACTTTCTGCCTCATGCA+AGG 0.585154 tig0024078:-7439 None:intergenic
ATGTTAGGAATGAAGTTGGG+AGG 0.591498 tig0024078:+4919 Msa1413950:CDS
ATCTCCCATTTAGCTGCCAG+TGG 0.594947 tig0024078:+5769 Msa1413950:CDS
TGAGACCAGCGCAAAACGGA+GGG 0.595041 tig0024078:-5508 None:intergenic
CCCATGATTCGTGATGCACA+TGG 0.595536 tig0024078:+5303 Msa1413950:CDS
AACAGAAGCATTACAAAAGG+AGG 0.596449 tig0024078:+2889 Msa1413950:CDS
AATTAACCTAGATATTCAAA+GGG 0.596791 tig0024078:+5641 Msa1413950:CDS
ACGTTTATCTTCAGGATGAA+CGG 0.597355 tig0024078:-2512 None:intergenic
GTTTAACCTAAACGTAACGT+TGG 0.597382 tig0024078:-7658 None:intergenic
AGTGTAGGACAGCCAAAATG+AGG 0.600259 tig0024078:-7507 None:intergenic
ATTATATTGAGATAAAAGAA+AGG 0.601884 tig0024078:+2347 Msa1413950:CDS
TAACCTAGATATTCAAAGGG+TGG 0.602041 tig0024078:+5644 Msa1413950:CDS
GTTCGGCAGAGAGCAAAAGC+TGG 0.603268 tig0024078:-6599 None:intergenic
TTGCAGTGATATTGCAAAGG+AGG 0.604725 tig0024078:+3665 Msa1413950:CDS
TCTAAAGTGACATACCATGC+AGG 0.608725 tig0024078:-4619 None:intergenic
TTGGGATTGTGTGTTACGTA+CGG 0.610374 tig0024078:+2229 Msa1413950:CDS
TGAAGAAGAGGCCAGAGATG+AGG 0.610534 tig0024078:+4699 Msa1413950:CDS
ATCTCTGGATTGGTCTCGTG+AGG 0.611026 tig0024078:+938 Msa1413950:CDS
CTGGAGTCAAATTTGCAGGA+GGG 0.612291 tig0024078:-5743 None:intergenic
TGAAAGCGTGGAGAATGAGA+TGG 0.618447 tig0024078:+6381 Msa1413950:CDS
TAAAAGGATGAAGCAATCGC+AGG 0.618602 tig0024078:-6010 None:intergenic
TCTGGAGTCAAATTTGCAGG+AGG 0.620009 tig0024078:-5744 None:intergenic
TGGCAAAAGAGAGACGTGAC+AGG 0.624683 tig0024078:+6440 Msa1413950:CDS
TTACTGCTTGCAGATTACAC+CGG 0.626097 tig0024078:+2727 Msa1413950:intron
GGCAAATAGAAAGATTAGAG+AGG 0.626763 tig0024078:+7262 Msa1413950:intron
AATATGTGGCTGATTGGAAG+AGG 0.627242 tig0024078:+3742 Msa1413950:CDS
GGGGTCACCAAATTCCTGCA+TGG 0.630104 tig0024078:+4605 Msa1413950:CDS
AAACTCACAAGACATGATCT+GGG 0.632724 tig0024078:+722 Msa1413950:CDS
CCAAATGGTATCGAGGAATG+TGG 0.633977 tig0024078:+5477 Msa1413950:CDS
GATGGGAAAGTAAATTCCAA+TGG 0.634773 tig0024078:+2818 Msa1413950:CDS
TCACGGATGAGGAAAACAGA+AGG 0.635525 tig0024078:+3700 Msa1413950:CDS
GAATGTTATTGATCCCATTG+AGG 0.636549 tig0024078:+5350 Msa1413950:CDS
TACCCTTTGGAAGGGAACCT+AGG 0.637827 tig0024078:+2433 Msa1413950:CDS
TGATTATCCATCCGCTACAG+AGG 0.638518 tig0024078:+6112 Msa1413950:CDS
GGGAAAGTAAATTCCAATGG+TGG 0.638613 tig0024078:+2821 Msa1413950:CDS
AGCCAATGATAAAGCCACAA+TGG 0.640130 tig0024078:+3634 Msa1413950:CDS
CACGGATGAGGAAAACAGAA+GGG 0.640182 tig0024078:+3701 Msa1413950:CDS
TGGCAACAACAATTTCACCT+AGG 0.642103 tig0024078:-2450 None:intergenic
TCAACACAGATAGTATCCAC+TGG 0.644976 tig0024078:-5785 None:intergenic
GGACTTTCCAAATGGTATCG+AGG 0.646270 tig0024078:+5470 Msa1413950:CDS
ATGAGACCAGCGCAAAACGG+AGG 0.649022 tig0024078:-5509 None:intergenic
GCTTCCCGAGCCTTAAATCG+AGG 0.649064 tig0024078:-2863 None:intergenic
CAATTGCAGTGATATTGCAA+AGG 0.655646 tig0024078:+3662 Msa1413950:CDS
ACTTAACAGTAGACTCAATG+AGG 0.657410 tig0024078:-6405 None:intergenic
GAGCTGGAATAATGAAAGCG+TGG 0.662401 tig0024078:+6369 Msa1413950:intron
GCAAGATGTCCAAGTCTTTG+GGG 0.663281 tig0024078:+5328 Msa1413950:CDS
ATTTCACGACAGCTATGGTG+GGG 0.663855 tig0024078:+4586 Msa1413950:CDS
AAACAAACTAACCTCTGTAG+CGG 0.665007 tig0024078:-6123 None:intergenic
CTGCAATTGACATACCATTG+TGG 0.665557 tig0024078:-3648 None:intergenic
GTGCAATAAACTATGGAATG+CGG 0.676125 tig0024078:+5683 Msa1413950:CDS
CCACCAAGAATACACAGCAG+TGG 0.692418 tig0024078:-5865 None:intergenic
CCAGAGATGAGGCTAACCAA+AGG 0.697459 tig0024078:+4710 Msa1413950:CDS
CTACATACAAGGTTAGAAGG+TGG 0.713369 tig0024078:+5399 Msa1413950:CDS
TGCTTCTTGAACATACACCA+AGG 0.717307 tig0024078:-3599 None:intergenic
CATGTGCATCACGAATCATG+GGG 0.721117 tig0024078:-5302 None:intergenic
ACCATGTATCCAGAACGTCA+GGG 0.747479 tig0024078:-4765 None:intergenic
TTGGGAGAGCACCTCCAACG+AGG 0.764683 tig0024078:-7639 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATAAATTTAAAATTGGAAT+CGG - tig0024078:1464-1483 None:intergenic 10.0%
!!! CATAACTATAAATTTAAAAT+TGG - tig0024078:1470-1489 None:intergenic 10.0%
!! AATACTTATACTTATTTATT+AGG - tig0024078:1574-1593 None:intergenic 10.0%
!!! ACCTTTTTTTTTTTTTTTTT+TGG + tig0024078:4388-4407 Msa1413950:intron 10.0%
!! ACCAAAAAAAAAAAAAAAAA+AGG - tig0024078:4392-4411 None:intergenic 10.0%
!!! TTTTTTTTTTTTTTGGTTAA+TGG + tig0024078:4395-4414 Msa1413950:intron 10.0%
!!! TTTTTTTTTTTTTGGATTTG+TGG + tig0024078:1010-1029 Msa1413950:intron 15.0%
!!! TTTTTTTTTTTTGGATTTGT+GGG + tig0024078:1011-1030 Msa1413950:intron 15.0%
!! GACTAATAATATTTACTTAA+AGG + tig0024078:1594-1613 Msa1413950:intron 15.0%
!!! TATATCATGTTTTCAAAATA+TGG - tig0024078:1817-1836 None:intergenic 15.0%
!!! TTTACTATTTTATGTTCAAT+AGG - tig0024078:1886-1905 None:intergenic 15.0%
!! ATTATATTGAGATAAAAGAA+AGG + tig0024078:2347-2366 Msa1413950:CDS 15.0%
!!! TTTAGCTAAGTTATTTTTTA+TGG - tig0024078:3265-3284 None:intergenic 15.0%
!! AGATGTTAAAACATATATAA+GGG - tig0024078:3879-3898 None:intergenic 15.0%
!! ATAACAAAAGTTAACTAAAT+AGG - tig0024078:5585-5604 None:intergenic 15.0%
!! AGAAAGAAAAATATGATTAT+AGG - tig0024078:7192-7211 None:intergenic 15.0%
!! TAATCTATTGTTATGATATT+TGG + tig0024078:7561-7580 Msa1413950:three_prime_UTR 15.0%
!! AATCTATTGTTATGATATTT+GGG + tig0024078:7562-7581 Msa1413950:three_prime_UTR 15.0%
!!! TCTCACTCTTTTTTTTTTTT+TGG + tig0024078:1002-1021 Msa1413950:intron 20.0%
!!! TTTTTTTTTTTGGATTTGTG+GGG + tig0024078:1012-1031 Msa1413950:intron 20.0%
!!! ACTTTTTTTATGACTCAAAA+TGG + tig0024078:1998-2017 Msa1413950:intron 20.0%
!! TAAGTATAAGTTGTGATATA+AGG - tig0024078:2108-2127 None:intergenic 20.0%
!! TGAAAACGTTAATAAATTCA+AGG - tig0024078:2793-2812 None:intergenic 20.0%
!!! AAAACTTTTATTGGAAAGTA+TGG + tig0024078:2983-3002 Msa1413950:intron 20.0%
!!! GAAGAAATTTTTTGTTTTGA+AGG - tig0024078:3070-3089 None:intergenic 20.0%
!! AACATACGAATTGATAAATA+GGG - tig0024078:3100-3119 None:intergenic 20.0%
!! AAACATACGAATTGATAAAT+AGG - tig0024078:3101-3120 None:intergenic 20.0%
!! TAAAGACAATTATAATACGA+AGG + tig0024078:3297-3316 Msa1413950:intron 20.0%
!! ATTGTTAGTAAACAAAAACA+TGG + tig0024078:3350-3369 Msa1413950:intron 20.0%
!! AAAACATGGAAAATACAAAA+AGG + tig0024078:3364-3383 Msa1413950:intron 20.0%
!! AGAGATAAATACTAATACAA+CGG - tig0024078:3454-3473 None:intergenic 20.0%
!! GATGTTAAAACATATATAAG+GGG - tig0024078:3878-3897 None:intergenic 20.0%
!! GAGATGTTAAAACATATATA+AGG - tig0024078:3880-3899 None:intergenic 20.0%
!! AAGATGATACTATAATTGAA+CGG - tig0024078:3909-3928 None:intergenic 20.0%
!! ACTATCTTAGTTAATATCTT+AGG + tig0024078:4103-4122 Msa1413950:intron 20.0%
!!! ACTTTTAGTGATTTGTATTT+TGG + tig0024078:4144-4163 Msa1413950:intron 20.0%
!! TCTATTTATTAGCAAAATAG+AGG + tig0024078:4169-4188 Msa1413950:intron 20.0%
!! AATACAGAAAAGAAAAACTT+AGG - tig0024078:5093-5112 None:intergenic 20.0%
!! AAATTAACCTAGATATTCAA+AGG + tig0024078:5640-5659 Msa1413950:CDS 20.0%
!! AATTAACCTAGATATTCAAA+GGG + tig0024078:5641-5660 Msa1413950:CDS 20.0%
!! AGCTAGTAATAAATACAAAA+AGG + tig0024078:7013-7032 Msa1413950:intron 20.0%
! TTGTGAATATTTGTAAAAGC+AGG + tig0024078:854-873 Msa1413950:intron 25.0%
! AATATTTGTAAAAGCAGGTT+TGG + tig0024078:859-878 Msa1413950:intron 25.0%
! ATATTTGTAAAAGCAGGTTT+GGG + tig0024078:860-879 Msa1413950:intron 25.0%
!!! TTTTTTTTTTGGATTTGTGG+GGG + tig0024078:1013-1032 Msa1413950:intron 25.0%
!!! CTTTTATTCCTATTTTTCTG+AGG + tig0024078:1419-1438 Msa1413950:intron 25.0%
! AGTTTAAATCGATGCATTAT+TGG + tig0024078:1533-1552 Msa1413950:intron 25.0%
! GATCTAAATAAACAGATGAT+GGG - tig0024078:1910-1929 None:intergenic 25.0%
! TGATCTAAATAAACAGATGA+TGG - tig0024078:1911-1930 None:intergenic 25.0%
!!! GATTCTGTTGTATTTAGTTT+TGG + tig0024078:2060-2079 Msa1413950:intron 25.0%
!! TTTAAAACTCCAAATTCAAC+AGG - tig0024078:2403-2422 None:intergenic 25.0%
! AAAAAAATTTGCATACCCTT+TGG + tig0024078:2420-2439 Msa1413950:CDS 25.0%
! AGAATAGCATCACATATTAT+AGG - tig0024078:2592-2611 None:intergenic 25.0%
!!! AATAACAGAAGCATTACAAA+AGG + tig0024078:2886-2905 Msa1413950:CDS 25.0%
! ACATACGAATTGATAAATAG+GGG - tig0024078:3099-3118 None:intergenic 25.0%
! CGTATTATAATTGTCTTTAG+AGG - tig0024078:3296-3315 None:intergenic 25.0%
! ATCTCTATCTTAACTTAACT+TGG + tig0024078:3468-3487 Msa1413950:intron 25.0%
! GATTATTCCAAAACAATATG+TGG + tig0024078:3728-3747 Msa1413950:CDS 25.0%
! TTAAAACATATATAAGGGGT+GGG - tig0024078:3874-3893 None:intergenic 25.0%
! TTTCTATATCTTCTCACAAA+AGG - tig0024078:4045-4064 None:intergenic 25.0%
!!! TTTTTTTTTGGTTAATGGAG+TGG + tig0024078:4400-4419 Msa1413950:intron 25.0%
! AGTAAGAAGATAACAGAAAT+GGG - tig0024078:4489-4508 None:intergenic 25.0%
! TGGTTGTATCATACAAATAA+AGG - tig0024078:4514-4533 None:intergenic 25.0%
!!! ATACAACCATGTTTTAATCA+AGG + tig0024078:4525-4544 Msa1413950:intron 25.0%
! AATACACCTTGATTAAAACA+TGG - tig0024078:4534-4553 None:intergenic 25.0%
! GAAAGAAGTTTCATTTAATC+CGG + tig0024078:4740-4759 Msa1413950:CDS 25.0%
! AAAGAAGTTTCATTTAATCC+GGG + tig0024078:4741-4760 Msa1413950:CDS 25.0%
!! ATTTTATCCAACTTCTGTTT+TGG + tig0024078:4852-4871 Msa1413950:CDS 25.0%
! AGTATCACACAAAATTCATT+AGG - tig0024078:5018-5037 None:intergenic 25.0%
!! TGCCTAACTTTTTATATCAA+TGG + tig0024078:5235-5254 Msa1413950:intron 25.0%
! GACCATTGATATAAAAAGTT+AGG - tig0024078:5240-5259 None:intergenic 25.0%
!! TTAATTTTGTCAGACTGAAA+TGG - tig0024078:5627-5646 None:intergenic 25.0%
! TAACGTGAATGTATACAAAA+AGG - tig0024078:6202-6221 None:intergenic 25.0%
!!! AGAATAGAACATGATTTGTT+TGG + tig0024078:6304-6323 Msa1413950:intron 25.0%
! TATTTCTTTAATATCAGAGC+TGG + tig0024078:6353-6372 Msa1413950:intron 25.0%
! CAAAATCACAACAAAATACA+AGG - tig0024078:6737-6756 None:intergenic 25.0%
!! ATCATATTTTTCTTTCTGTG+TGG + tig0024078:7195-7214 Msa1413950:intron 25.0%
!! TCATATTTTTCTTTCTGTGT+GGG + tig0024078:7196-7215 Msa1413950:intron 25.0%
! CTAAATAAAGCTTATAGTGT+AGG - tig0024078:7525-7544 None:intergenic 25.0%
TCGTGAAAAATTTATCTCAG+AGG + tig0024078:745-764 Msa1413950:CDS 30.0%
!!! TTTTTTTTTGGATTTGTGGG+GGG + tig0024078:1014-1033 Msa1413950:intron 30.0%
! TGATTTATAAGGGTGTAACT+AGG - tig0024078:1114-1133 None:intergenic 30.0%
TCTACTCGAGTGATTTATAA+GGG - tig0024078:1124-1143 None:intergenic 30.0%
TTCTACTCGAGTGATTTATA+AGG - tig0024078:1125-1144 None:intergenic 30.0%
TAAAGTCAATCACCATACTA+CGG - tig0024078:1226-1245 None:intergenic 30.0%
ATTATGCACCTCAGAAAAAT+AGG - tig0024078:1430-1449 None:intergenic 30.0%
!! GCATCGATTTAAACTTTGTT+CGG - tig0024078:1528-1547 None:intergenic 30.0%
AGACACGATTATATTTGCTT+TGG - tig0024078:1620-1639 None:intergenic 30.0%
TCTCAGATACTTTATGTACA+AGG + tig0024078:1720-1739 Msa1413950:intron 30.0%
ATCGAAACAATGAAAGGAAA+GGG - tig0024078:2043-2062 None:intergenic 30.0%
AATCGAAACAATGAAAGGAA+AGG - tig0024078:2044-2063 None:intergenic 30.0%
AACAGAATCGAAACAATGAA+AGG - tig0024078:2049-2068 None:intergenic 30.0%
TTATGTAACTGTTTGCTTGT+AGG + tig0024078:2321-2340 Msa1413950:intron 30.0%
AAACGTTACGAACAATTTCA+TGG + tig0024078:2529-2548 Msa1413950:CDS 30.0%
GAATCTTTCTGCCATTAAAT+GGG - tig0024078:2570-2589 None:intergenic 30.0%
ATTCTTGTTGATCCAAAGTT+CGG + tig0024078:2607-2626 Msa1413950:CDS 30.0%
TTTCCAACCTCAAAATCATT+GGG - tig0024078:2761-2780 None:intergenic 30.0%
! TTTTCCAACCTCAAAATCAT+TGG - tig0024078:2762-2781 None:intergenic 30.0%
! GTTACGTGGAAAACTTTTAT+TGG + tig0024078:2974-2993 Msa1413950:intron 30.0%
! TATTGGAAAGTATGGATGTA+AGG + tig0024078:2991-3010 Msa1413950:intron 30.0%
! ATTGGAAAGTATGGATGTAA+GGG + tig0024078:2992-3011 Msa1413950:intron 30.0%
!!! TGCTGCTTTCAATATTCTTT+TGG + tig0024078:3044-3063 Msa1413950:intron 30.0%
AATTCGTATGTTTATGCTAG+AGG + tig0024078:3108-3127 Msa1413950:intron 30.0%
TAATGACACGCACAATAATT+GGG + tig0024078:3503-3522 Msa1413950:intron 30.0%
GTTAAAACATATATAAGGGG+TGG - tig0024078:3875-3894 None:intergenic 30.0%
CTTAGTTAATATCTTAGGAG+CGG + tig0024078:4108-4127 Msa1413950:intron 30.0%
ACACTAATAGAATAGGAAGA+AGG - tig0024078:4281-4300 None:intergenic 30.0%
CTGTGTTTGACGAATATATT+TGG - tig0024078:4330-4349 None:intergenic 30.0%
ATATATTCGTCAAACACAGA+AGG + tig0024078:4331-4350 Msa1413950:intron 30.0%
GAGTAAGAAGATAACAGAAA+TGG - tig0024078:4490-4509 None:intergenic 30.0%
TAATCAAGGTGTATTACAGA+TGG + tig0024078:4539-4558 Msa1413950:intron 30.0%
GTTATGTTAGGAATGAAGTT+GGG + tig0024078:4916-4935 Msa1413950:CDS 30.0%
! CTATCTTTTGCTGATCATTT+GGG + tig0024078:4970-4989 Msa1413950:intron 30.0%
! TATCTTTTGCTGATCATTTG+GGG + tig0024078:4971-4990 Msa1413950:intron 30.0%
! ATGAATTTTGTGTGATACTC+AGG + tig0024078:5019-5038 Msa1413950:intron 30.0%
GCATCAATGACTAAAAATCA+CGG - tig0024078:5071-5090 None:intergenic 30.0%
GAAAAGAAGATTCAGAAAGT+AGG + tig0024078:5138-5157 Msa1413950:intron 30.0%
AAAATAATCATGCAAGCAGT+TGG - tig0024078:5558-5577 None:intergenic 30.0%
GCTAATAGAAAATGTGTGTT+TGG + tig0024078:6260-6279 Msa1413950:intron 30.0%
! ATACAAAGTACTATGCTCTA+AGG - tig0024078:6483-6502 None:intergenic 30.0%
AACAATAATTACTGTTTGCC+AGG + tig0024078:6573-6592 Msa1413950:intron 30.0%
! AATTGTATCATTGGCATTGA+AGG - tig0024078:6803-6822 None:intergenic 30.0%
! CAATTAATTCTGAAGATGCT+AGG + tig0024078:6913-6932 Msa1413950:CDS 30.0%
TACAACTTGAACTTATAGAC+TGG + tig0024078:7225-7244 Msa1413950:intron 30.0%
ACAAATTCAATCGAAGAATG+AGG + tig0024078:7323-7342 Msa1413950:CDS 30.0%
! AATTAACTTTTCCTTGCATG+AGG + tig0024078:7428-7447 Msa1413950:three_prime_UTR 30.0%
TACTATGAAGTTTCACTTAC+AGG + tig0024078:7467-7486 Msa1413950:three_prime_UTR 30.0%
TACAGGAACTTCACAATTTA+TGG + tig0024078:7484-7503 Msa1413950:three_prime_UTR 30.0%
!! ATTTGCAGTATTGACTTTGA+GGG - tig0024078:7602-7621 None:intergenic 30.0%
!! AATTTGCAGTATTGACTTTG+AGG - tig0024078:7603-7622 None:intergenic 30.0%
TTTAACCTAAACGTAACGTT+GGG - tig0024078:7660-7679 None:intergenic 30.0%
AAACTCACAAGACATGATCT+GGG + tig0024078:722-741 Msa1413950:CDS 35.0%
TTCACAAAAGTCACAAGAGT+TGG - tig0024078:841-860 None:intergenic 35.0%
TGGGAATGGAAAAACAAGTA+TGG + tig0024078:879-898 Msa1413950:CDS 35.0%
GGGAATGGAAAAACAAGTAT+GGG + tig0024078:880-899 Msa1413950:CDS 35.0%
GGAATGGAAAAACAAGTATG+GGG + tig0024078:881-900 Msa1413950:CDS 35.0%
GAATGGAAAAACAAGTATGG+GGG + tig0024078:882-901 Msa1413950:CDS 35.0%
! TTGCAACAATTACGTCGATT+AGG + tig0024078:912-931 Msa1413950:CDS 35.0%
CAGTGGTATAAACACTAACT+AGG - tig0024078:975-994 None:intergenic 35.0%
CTAGTTAGTGTTTATACCAC+TGG + tig0024078:973-992 Msa1413950:intron 35.0%
AATAGCCATTTAACTGCCAT+AGG - tig0024078:1185-1204 None:intergenic 35.0%
AATGGATGACAAGAGATCTA+AGG + tig0024078:1293-1312 Msa1413950:CDS 35.0%
! TTTGACTTCAGATTCATGCT+TGG - tig0024078:1772-1791 None:intergenic 35.0%
AAGTCAAAACAAGAGTCACA+TGG + tig0024078:1784-1803 Msa1413950:intron 35.0%
GAAAGGAAAGGGTAGAATAT+CGG - tig0024078:2032-2051 None:intergenic 35.0%
ATAAGGAACTGAGAAGTTGA+TGG - tig0024078:2091-2110 None:intergenic 35.0%
!!! CATTTTAGAGTTCATGTGAC+AGG - tig0024078:2149-2168 None:intergenic 35.0%
! CTGTCACATGAACTCTAAAA+TGG + tig0024078:2147-2166 Msa1413950:intron 35.0%
!! ACTCTAAAATGGCTCTTCTT+TGG + tig0024078:2158-2177 Msa1413950:intron 35.0%
TCTGATATTGAGGTATGTGA+TGG + tig0024078:2257-2276 Msa1413950:intron 35.0%
AAAAGAAAGGACCCTACTAA+AGG + tig0024078:2360-2379 Msa1413950:CDS 35.0%
TACGACAAACCTGTTGAATT+TGG + tig0024078:2391-2410 Msa1413950:CDS 35.0%
AAATTTGCATACCCTTTGGA+AGG + tig0024078:2424-2443 Msa1413950:CDS 35.0%
! AATTTGCATACCCTTTGGAA+GGG + tig0024078:2425-2444 Msa1413950:CDS 35.0%
! AAATTGTTGTTGCCACAACT+AGG + tig0024078:2458-2477 Msa1413950:CDS 35.0%
CATAGTTTCAATCCTAGTTG+TGG - tig0024078:2473-2492 None:intergenic 35.0%
ACTAGGATTGAAACTATGCT+TGG + tig0024078:2475-2494 Msa1413950:CDS 35.0%
ACGTTTATCTTCAGGATGAA+CGG - tig0024078:2515-2534 None:intergenic 35.0%
TGTTCGTAACGTTTATCTTC+AGG - tig0024078:2523-2542 None:intergenic 35.0%
TATGCTGTTCACCCATTTAA+TGG + tig0024078:2556-2575 Msa1413950:CDS 35.0%
GGAATCTTTCTGCCATTAAA+TGG - tig0024078:2571-2590 None:intergenic 35.0%
TTCTTGTTGATCCAAAGTTC+GGG + tig0024078:2608-2627 Msa1413950:CDS 35.0%
CTCAAAATCATTGGGATCAT+GGG - tig0024078:2753-2772 None:intergenic 35.0%
! ATTAACGTTTTCACTGACGA+TGG + tig0024078:2800-2819 Msa1413950:CDS 35.0%
! TTAACGTTTTCACTGACGAT+GGG + tig0024078:2801-2820 Msa1413950:CDS 35.0%
GATGGGAAAGTAAATTCCAA+TGG + tig0024078:2818-2837 Msa1413950:CDS 35.0%
!! AACAGAAGCATTACAAAAGG+AGG + tig0024078:2889-2908 Msa1413950:CDS 35.0%
TAGGCAACAAATATGTTACG+TGG + tig0024078:2960-2979 Msa1413950:intron 35.0%
! TTGGAAAGTATGGATGTAAG+GGG + tig0024078:2993-3012 Msa1413950:intron 35.0%
CAAAAATGTAACCGTGAACT+AGG + tig0024078:3146-3165 Msa1413950:intron 35.0%
GTAATAAGATGATAGCACCA+TGG + tig0024078:3198-3217 Msa1413950:intron 35.0%
AGGAACAGAAAGAATGTGAA+TGG + tig0024078:3317-3336 Msa1413950:intron 35.0%
GGAACAGAAAGAATGTGAAT+GGG + tig0024078:3318-3337 Msa1413950:intron 35.0%
CAGCAAGTAAAAACAAGTGA+GGG + tig0024078:3419-3438 Msa1413950:intron 35.0%
AGCAAGTAAAAACAAGTGAG+GGG + tig0024078:3420-3439 Msa1413950:intron 35.0%
GTAATGACACGCACAATAAT+TGG + tig0024078:3502-3521 Msa1413950:intron 35.0%
TCATTTGCTTCCTTTCATGT+AGG + tig0024078:3542-3561 Msa1413950:intron 35.0%
CATTTGCTTCCTTTCATGTA+GGG + tig0024078:3543-3562 Msa1413950:intron 35.0%
CTATAAAGACCCTACATGAA+AGG - tig0024078:3555-3574 None:intergenic 35.0%
TTCATGTAGGGTCTTTATAG+AGG + tig0024078:3555-3574 Msa1413950:intron 35.0%
!! TACCATTGTGGCTTTATCAT+TGG - tig0024078:3639-3658 None:intergenic 35.0%
CAATTGCAGTGATATTGCAA+AGG + tig0024078:3662-3681 Msa1413950:CDS 35.0%
! CAATCAGCCACATATTGTTT+TGG - tig0024078:3738-3757 None:intergenic 35.0%
CAAAACAATATGTGGCTGAT+TGG + tig0024078:3736-3755 Msa1413950:CDS 35.0%
AATCATAGACCACATTTCAG+AGG - tig0024078:3833-3852 None:intergenic 35.0%
! ATGTTGAGTTTGAGTTTGAC+CGG + tig0024078:3947-3966 Msa1413950:intron 35.0%
GATGTCGACACTAATAGAAT+AGG - tig0024078:4288-4307 None:intergenic 35.0%
AAACACAGAAGGAAAATCGT+TGG + tig0024078:4342-4361 Msa1413950:intron 35.0%
AAATCGTTGGATGCTGTTAT+TGG + tig0024078:4355-4374 Msa1413950:intron 35.0%
! ACACATATGCCACAATTTTG+TGG + tig0024078:4445-4464 Msa1413950:intron 35.0%
ACTTCTTTCCATGATACCTT+TGG - tig0024078:4729-4748 None:intergenic 35.0%
! CCATGATATCCTCTTTTTCT+GGG + tig0024078:4882-4901 Msa1413950:CDS 35.0%
GGTTATGTTAGGAATGAAGT+TGG + tig0024078:4915-4934 Msa1413950:CDS 35.0%
! GCTATCTTTTGCTGATCATT+TGG + tig0024078:4969-4988 Msa1413950:intron 35.0%
! AATTTTGTGTGATACTCAGG+TGG + tig0024078:5022-5041 Msa1413950:intron 35.0%
AAGAAGATTCAGAAAGTAGG+TGG + tig0024078:5141-5160 Msa1413950:intron 35.0%
AAGTTAGGCATCAACAAGAT+TGG - tig0024078:5225-5244 None:intergenic 35.0%
AATAACATTCCCCAAAGACT+TGG - tig0024078:5340-5359 None:intergenic 35.0%
GAATGTTATTGATCCCATTG+AGG + tig0024078:5350-5369 Msa1413950:CDS 35.0%
ATAAACGGGATAACACTAGA+AGG + tig0024078:5375-5394 Msa1413950:CDS 35.0%
TAACCTAGATATTCAAAGGG+TGG + tig0024078:5644-5663 Msa1413950:CDS 35.0%
TAGATATTCAAAGGGTGGTT+GGG + tig0024078:5649-5668 Msa1413950:CDS 35.0%
TCCATAGTTTATTGCACCAT+TGG - tig0024078:5680-5699 None:intergenic 35.0%
GTGCAATAAACTATGGAATG+CGG + tig0024078:5683-5702 Msa1413950:CDS 35.0%
! TTATCTGGAGTCAAATTTGC+AGG - tig0024078:5750-5769 None:intergenic 35.0%
! AGACTTGGTTACTTTCGATA+TGG - tig0024078:5817-5836 None:intergenic 35.0%
! TCCTTTTATGCCTTTTGTCA+CGG + tig0024078:6025-6044 Msa1413950:CDS 35.0%
AAACAAACTAACCTCTGTAG+CGG - tig0024078:6126-6145 None:intergenic 35.0%
TTAGCGAACGTTTCTCAATT+AGG - tig0024078:6245-6264 None:intergenic 35.0%
ACTTAACAGTAGACTCAATG+AGG - tig0024078:6408-6427 None:intergenic 35.0%
TGTTAAGTCTATCAGATCAC+TGG + tig0024078:6420-6439 Msa1413950:CDS 35.0%
TCTCTTTAACCACATGTGTT+CGG - tig0024078:6619-6638 None:intergenic 35.0%
GATTATTAACAGCCATCAAC+TGG + tig0024078:6637-6656 Msa1413950:CDS 35.0%
TGTTCGACTTACAGTAAAAG+AGG - tig0024078:6687-6706 None:intergenic 35.0%
ATGCCAATGATACAATTCAC+AGG + tig0024078:6806-6825 Msa1413950:intron 35.0%
TCACCTGTGAATTGTATCAT+TGG - tig0024078:6812-6831 None:intergenic 35.0%
GAAATTGAAGCTGATCTTTC+TGG + tig0024078:6837-6856 Msa1413950:CDS 35.0%
!! GAAGCTCTAAATACACAGAA+AGG - tig0024078:6890-6909 None:intergenic 35.0%
! AGACTGGAGAATTTTTATGC+AGG + tig0024078:7241-7260 Msa1413950:intron 35.0%
GGCAAATAGAAAGATTAGAG+AGG + tig0024078:7262-7281 Msa1413950:intron 35.0%
GAAACGTTCTCTTTATAACC+TGG - tig0024078:7300-7319 None:intergenic 35.0%
AAGCAACAAACGCTTCTTTA+GGG - tig0024078:7361-7380 None:intergenic 35.0%
! GTGAAACTTCATAGTACTGA+TGG - tig0024078:7463-7482 None:intergenic 35.0%
! CACAATTTATGGCCTCATTT+TGG + tig0024078:7495-7514 Msa1413950:three_prime_UTR 35.0%
GTTTAACCTAAACGTAACGT+TGG - tig0024078:7661-7680 None:intergenic 35.0%
GAAACTCACAAGACATGATC+TGG + tig0024078:721-740 Msa1413950:CDS 40.0%
TGTAAAAGCAGGTTTGGGAA+TGG + tig0024078:865-884 Msa1413950:intron 40.0%
! CTCTTTTCAGTGCTTCACAA+TGG + tig0024078:1275-1294 Msa1413950:intron 40.0%
! CTGTAACAGAGGCTTTTGTA+AGG + tig0024078:1316-1335 Msa1413950:CDS 40.0%
ACAAGCTAGACCGTATCTAT+AGG + tig0024078:1343-1362 Msa1413950:CDS 40.0%
ATCCACCTCACCTATAGATA+CGG - tig0024078:1356-1375 None:intergenic 40.0%
TCTATAGGTGAGGTGGATAA+TGG + tig0024078:1358-1377 Msa1413950:intron 40.0%
! AACAAGAGTCACATGGACTA+AGG + tig0024078:1791-1810 Msa1413950:intron 40.0%
AGACGTACGGTTAGTGAATT+GGG + tig0024078:2211-2230 Msa1413950:CDS 40.0%
TTGGGATTGTGTGTTACGTA+CGG + tig0024078:2229-2248 Msa1413950:CDS 40.0%
TACGGCAGTATCTGATATTG+AGG + tig0024078:2247-2266 Msa1413950:CDS 40.0%
!! TGTACTGCTGTTTCATCTGA+TGG + tig0024078:2281-2300 Msa1413950:intron 40.0%
TGTAACTGTTTGCTTGTAGG+TGG + tig0024078:2324-2343 Msa1413950:intron 40.0%
GTATCCTGGAACCTTTAGTA+GGG - tig0024078:2374-2393 None:intergenic 40.0%
TGGCAACAACAATTTCACCT+AGG - tig0024078:2453-2472 None:intergenic 40.0%
CGCTTGAAAGAGAACTTAGA+TGG - tig0024078:2680-2699 None:intergenic 40.0%
TTACTGCTTGCAGATTACAC+CGG + tig0024078:2727-2746 Msa1413950:intron 40.0%
CCTCAAAATCATTGGGATCA+TGG - tig0024078:2754-2773 None:intergenic 40.0%
! CCATGATCCCAATGATTTTG+AGG + tig0024078:2751-2770 Msa1413950:CDS 40.0%
!!! GATCCCAATGATTTTGAGGT+TGG + tig0024078:2755-2774 Msa1413950:CDS 40.0%
GGGAAAGTAAATTCCAATGG+TGG + tig0024078:2821-2840 Msa1413950:CDS 40.0%
TTTGGACATGCCTCGATTTA+AGG + tig0024078:2853-2872 Msa1413950:CDS 40.0%
TCTCTTCCATATGACACTTC+CGG + tig0024078:2933-2952 Msa1413950:intron 40.0%
! CATATTTGTTGCCTAAGCAC+CGG - tig0024078:2955-2974 None:intergenic 40.0%
! TGGAAAGTATGGATGTAAGG+GGG + tig0024078:2994-3013 Msa1413950:intron 40.0%
ATGTAACCGTGAACTAGGAT+TGG + tig0024078:3151-3170 Msa1413950:intron 40.0%
TGTAACCGTGAACTAGGATT+GGG + tig0024078:3152-3171 Msa1413950:intron 40.0%
CAGTACGATCTTACAATCCA+TGG - tig0024078:3218-3237 None:intergenic 40.0%
GCAGCAAGTAAAAACAAGTG+AGG + tig0024078:3418-3437 Msa1413950:intron 40.0%
TGCTTCTTGAACATACACCA+AGG - tig0024078:3602-3621 None:intergenic 40.0%
AGCCAATGATAAAGCCACAA+TGG + tig0024078:3634-3653 Msa1413950:CDS 40.0%
CTGCAATTGACATACCATTG+TGG - tig0024078:3651-3670 None:intergenic 40.0%
TTGCAGTGATATTGCAAAGG+AGG + tig0024078:3665-3684 Msa1413950:CDS 40.0%
AATATGTGGCTGATTGGAAG+AGG + tig0024078:3742-3761 Msa1413950:CDS 40.0%
GTTTCAGTCTTCATCTCTAC+CGG - tig0024078:3969-3988 None:intergenic 40.0%
GATGAAGACTGAAACTGATC+AGG + tig0024078:3974-3993 Msa1413950:intron 40.0%
!! TCTATTAGTGTCGACATCAC+TGG + tig0024078:4290-4309 Msa1413950:intron 40.0%
! CATATGCCACAATTTTGTGG+TGG + tig0024078:4448-4467 Msa1413950:intron 40.0%
TGACATACCATGCAGGAATT+TGG - tig0024078:4615-4634 None:intergenic 40.0%
! TCTAAAGTGACATACCATGC+AGG - tig0024078:4622-4641 None:intergenic 40.0%
!! TGCATGGTATGTCACTTTAG+AGG + tig0024078:4621-4640 Msa1413950:CDS 40.0%
TTTAGAGGATGATGTACTGC+AGG + tig0024078:4636-4655 Msa1413950:CDS 40.0%
GATGATGTACTGCAGGAATT+GGG + tig0024078:4643-4662 Msa1413950:CDS 40.0%
! CTGGATACATGGTTTTCTTC+TGG + tig0024078:4775-4794 Msa1413950:CDS 40.0%
CCAGTTTCCAAAACAGAAGT+TGG - tig0024078:4862-4881 None:intergenic 40.0%
!!! CCAACTTCTGTTTTGGAAAC+TGG + tig0024078:4859-4878 Msa1413950:CDS 40.0%
! GCCATGATATCCTCTTTTTC+TGG + tig0024078:4881-4900 Msa1413950:CDS 40.0%
CCCAGAAAAAGAGGATATCA+TGG - tig0024078:4885-4904 None:intergenic 40.0%
GTTGCTCGTATGGTTATGTT+AGG + tig0024078:4904-4923 Msa1413950:CDS 40.0%
ATGTTAGGAATGAAGTTGGG+AGG + tig0024078:4919-4938 Msa1413950:CDS 40.0%
GATCCCATTGAGGTGATAAA+CGG + tig0024078:5360-5379 Msa1413950:CDS 40.0%
ATCCCATTGAGGTGATAAAC+GGG + tig0024078:5361-5380 Msa1413950:CDS 40.0%
ATCCCGTTTATCACCTCAAT+GGG - tig0024078:5366-5385 None:intergenic 40.0%
TATCCCGTTTATCACCTCAA+TGG - tig0024078:5367-5386 None:intergenic 40.0%
CACTAGAAGGTCTACATACA+AGG + tig0024078:5388-5407 Msa1413950:CDS 40.0%
GGTCTACATACAAGGTTAGA+AGG + tig0024078:5396-5415 Msa1413950:CDS 40.0%
CTACATACAAGGTTAGAAGG+TGG + tig0024078:5399-5418 Msa1413950:CDS 40.0%
! TGGCAACAGCTAGTTCTTTA+GGG - tig0024078:5434-5453 None:intergenic 40.0%
! ATGGCAACAGCTAGTTCTTT+AGG - tig0024078:5435-5454 None:intergenic 40.0%
CAGAAGAAGGACTTTCCAAA+TGG + tig0024078:5462-5481 Msa1413950:CDS 40.0%
CAACCACCCTTTGAATATCT+AGG - tig0024078:5650-5669 None:intergenic 40.0%
CTAGATATTCAAAGGGTGGT+TGG + tig0024078:5648-5667 Msa1413950:CDS 40.0%
GCCAATGGTGCAATAAACTA+TGG + tig0024078:5676-5695 Msa1413950:CDS 40.0%
CAGCTAAATGGGAGATTATC+TGG - tig0024078:5765-5784 None:intergenic 40.0%
TCAACACAGATAGTATCCAC+TGG - tig0024078:5788-5807 None:intergenic 40.0%
! CTCGTACAATTCTAGAGACT+TGG - tig0024078:5832-5851 None:intergenic 40.0%
!! GTGATCAAGCCTTACTTTTC+TGG + tig0024078:5918-5937 Msa1413950:CDS 40.0%
CGTCTTTCAGAAGGAAAGTT+GGG - tig0024078:5951-5970 None:intergenic 40.0%
! CCAACTTTCCTTCTGAAAGA+CGG + tig0024078:5949-5968 Msa1413950:CDS 40.0%
!!! AGACACTTTGTGGTTTTGTC+TGG + tig0024078:5980-5999 Msa1413950:CDS 40.0%
!!! TTGTGGTTTTGTCTGGACAA+TGG + tig0024078:5987-6006 Msa1413950:CDS 40.0%
TAAAAGGATGAAGCAATCGC+AGG - tig0024078:6013-6032 None:intergenic 40.0%
! TCCGTGACAAAAGGCATAAA+AGG - tig0024078:6029-6048 None:intergenic 40.0%
CACAATTCTTCCGTGACAAA+AGG - tig0024078:6038-6057 None:intergenic 40.0%
! CTTTTGTCACGGAAGAATTG+TGG + tig0024078:6036-6055 Msa1413950:CDS 40.0%
! AATTCTGAAGATGCTAGGCT+TGG + tig0024078:6918-6937 Msa1413950:CDS 40.0%
!! GTGTTCTGAAAAACAATGCG+AGG - tig0024078:6983-7002 None:intergenic 40.0%
AATAGTTGAGCATGCTTGCA+TGG + tig0024078:7076-7095 Msa1413950:intron 40.0%
! ATGCTTGCATGGTACCTTTT+AGG + tig0024078:7087-7106 Msa1413950:intron 40.0%
AATTCGAAACTCCGCCTAAA+AGG - tig0024078:7104-7123 None:intergenic 40.0%
CAAGCAACAAACGCTTCTTT+AGG - tig0024078:7362-7381 None:intergenic 40.0%
!! AAAGAAGCGTTTGTTGCTTG+AGG + tig0024078:7362-7381 Msa1413950:CDS 40.0%
! GTAAACTTGTTTGTCCTCGT+TGG + tig0024078:7625-7644 Msa1413950:three_prime_UTR 40.0%
!! GATTAGGAGCATCTCTGGAT+TGG + tig0024078:928-947 Msa1413950:CDS 45.0%
AAGAGTGAGAGAGATACCAG+TGG - tig0024078:992-1011 None:intergenic 45.0%
GGGTTGAGAATCTGGTAAGA+TGG + tig0024078:1034-1053 Msa1413950:intron 45.0%
CTGAAACAAAGCCTGTCCTA+TGG + tig0024078:1166-1185 Msa1413950:intron 45.0%
CCATTTAACTGCCATAGGAC+AGG - tig0024078:1180-1199 None:intergenic 45.0%
CCTGTCCTATGGCAGTTAAA+TGG + tig0024078:1177-1196 Msa1413950:intron 45.0%
GCAATTTCACTGCCGTAGTA+TGG + tig0024078:1211-1230 Msa1413950:intron 45.0%
! GAGATCTAAGGCTGTAACAG+AGG + tig0024078:1305-1324 Msa1413950:CDS 45.0%
CTAGACCGTATCTATAGGTG+AGG + tig0024078:1348-1367 Msa1413950:intron 45.0%
AGAGAGAGAGAGAGATTGAG+GGG - tig0024078:1683-1702 None:intergenic 45.0%
GAGAGAGAGAGAGAGATTGA+GGG - tig0024078:1684-1703 None:intergenic 45.0%
AGAGAGAGAGAGAGAGATTG+AGG - tig0024078:1685-1704 None:intergenic 45.0%
ACTTCAGATTCATGCTTGGC+AGG - tig0024078:1768-1787 None:intergenic 45.0%
CTCATTGTTGCAGAGACGTA+CGG + tig0024078:2198-2217 Msa1413950:intron 45.0%
GAGACGTACGGTTAGTGAAT+TGG + tig0024078:2210-2229 Msa1413950:intron 45.0%
CGTATCCTGGAACCTTTAGT+AGG - tig0024078:2375-2394 None:intergenic 45.0%
TCAACAGGTTTGTCGTATCC+TGG - tig0024078:2388-2407 None:intergenic 45.0%
GGTGTAATCTGCAAGCAGTA+AGG - tig0024078:2728-2747 None:intergenic 45.0%
AAATCATTGGGATCATGGGC+CGG - tig0024078:2749-2768 None:intergenic 45.0%
CAAAAATGCTGAGCCACCAT+TGG - tig0024078:2837-2856 None:intergenic 45.0%
! CAATGGTGGCTCAGCATTTT+TGG + tig0024078:2835-2854 Msa1413950:CDS 45.0%
! ACATGCCTCGATTTAAGGCT+CGG + tig0024078:2858-2877 Msa1413950:CDS 45.0%
!! TAAGCACCGGAAGTGTCATA+TGG - tig0024078:2942-2961 None:intergenic 45.0%
ATATGACACTTCCGGTGCTT+AGG + tig0024078:2941-2960 Msa1413950:intron 45.0%
! GGAAAGTATGGATGTAAGGG+GGG + tig0024078:2995-3014 Msa1413950:intron 45.0%
GAAAATAACGAGATGCGCCT+TGG + tig0024078:3582-3601 Msa1413950:CDS 45.0%
TCACGGATGAGGAAAACAGA+AGG + tig0024078:3700-3719 Msa1413950:CDS 45.0%
CACGGATGAGGAAAACAGAA+GGG + tig0024078:3701-3720 Msa1413950:CDS 45.0%
AGTTGGCCACCACAAAATTG+TGG - tig0024078:4457-4476 None:intergenic 45.0%
! CAATTTTGTGGTGGCCAACT+TGG + tig0024078:4457-4476 Msa1413950:intron 45.0%
CAAGGTGTATTACAGATGGC+TGG + tig0024078:4543-4562 Msa1413950:intron 45.0%
GGCTGGAAAACATTCGTGAT+TGG + tig0024078:4560-4579 Msa1413950:CDS 45.0%
CATTTCACGACAGCTATGGT+GGG + tig0024078:4585-4604 Msa1413950:CDS 45.0%
ATTTCACGACAGCTATGGTG+GGG + tig0024078:4586-4605 Msa1413950:CDS 45.0%
GGATGATGTACTGCAGGAAT+TGG + tig0024078:4642-4661 Msa1413950:CDS 45.0%
!! GAGGCTAACCAAAGGTATCA+TGG + tig0024078:4718-4737 Msa1413950:CDS 45.0%
ACCATGTATCCAGAACGTCA+GGG - tig0024078:4768-4787 None:intergenic 45.0%
AACCATGTATCCAGAACGTC+AGG - tig0024078:4769-4788 None:intergenic 45.0%
TCTGTTCCCTTTGACTGTAC+TGG + tig0024078:4798-4817 Msa1413950:CDS 45.0%
CTGTTCCCTTTGACTGTACT+GGG + tig0024078:4799-4818 Msa1413950:CDS 45.0%
TGATGACACAGACGACTTGA+GGG + tig0024078:4828-4847 Msa1413950:CDS 45.0%
TACGAGCAACCCAGAAAAAG+AGG - tig0024078:4894-4913 None:intergenic 45.0%
! CTTTTTCTGGGTTGCTCGTA+TGG + tig0024078:4894-4913 Msa1413950:CDS 45.0%
! AGGTGATGTGCCTTTTAGCA+AGG + tig0024078:4939-4958 Msa1413950:CDS 45.0%
! ATGTGCCTTTTAGCAAGGTG+AGG + tig0024078:4944-4963 Msa1413950:intron 45.0%
AGCAACCTCACCTTGCTAAA+AGG - tig0024078:4952-4971 None:intergenic 45.0%
CATGTGCATCACGAATCATG+GGG - tig0024078:5305-5324 None:intergenic 45.0%
CCATGTGCATCACGAATCAT+GGG - tig0024078:5306-5325 None:intergenic 45.0%
TCCATGTGCATCACGAATCA+TGG - tig0024078:5307-5326 None:intergenic 45.0%
ACGCAAGATGTCCAAGTCTT+TGG + tig0024078:5326-5345 Msa1413950:CDS 45.0%
CGCAAGATGTCCAAGTCTTT+GGG + tig0024078:5327-5346 Msa1413950:CDS 45.0%
GCAAGATGTCCAAGTCTTTG+GGG + tig0024078:5328-5347 Msa1413950:CDS 45.0%
!! CAGCTAGTTCTTTAGGGTCA+AGG - tig0024078:5428-5447 None:intergenic 45.0%
AGAACTAGCTGTTGCCATAG+AGG + tig0024078:5437-5456 Msa1413950:CDS 45.0%
GAACTAGCTGTTGCCATAGA+GGG + tig0024078:5438-5457 Msa1413950:CDS 45.0%
GGACTTTCCAAATGGTATCG+AGG + tig0024078:5470-5489 Msa1413950:CDS 45.0%
CCACATTCCTCGATACCATT+TGG - tig0024078:5480-5499 None:intergenic 45.0%
! CCAAATGGTATCGAGGAATG+TGG + tig0024078:5477-5496 Msa1413950:CDS 45.0%
TGTATGAGACCAGCGCAAAA+CGG - tig0024078:5515-5534 None:intergenic 45.0%
!! TGCAAGCAGTTGGTAACAGA+TGG - tig0024078:5548-5567 None:intergenic 45.0%
CTGGAGTCAAATTTGCAGGA+GGG - tig0024078:5746-5765 None:intergenic 45.0%
! TCTGGAGTCAAATTTGCAGG+AGG - tig0024078:5747-5766 None:intergenic 45.0%
GTATCCACTGGCAGCTAAAT+GGG - tig0024078:5776-5795 None:intergenic 45.0%
AGTATCCACTGGCAGCTAAA+TGG - tig0024078:5777-5796 None:intergenic 45.0%
CTACCACTGCTGTGTATTCT+TGG + tig0024078:5862-5881 Msa1413950:CDS 45.0%
GGATCACTGCCAGAAAAGTA+AGG - tig0024078:5930-5949 None:intergenic 45.0%
CCGTCTTTCAGAAGGAAAGT+TGG - tig0024078:5952-5971 None:intergenic 45.0%
TGAGCAAACCGTCTTTCAGA+AGG - tig0024078:5960-5979 None:intergenic 45.0%
! GGTTTGCTCAAGACACTTTG+TGG + tig0024078:5970-5989 Msa1413950:CDS 45.0%
TCTGCTCTCTTACATTCCCT+GGG - tig0024078:6077-6096 None:intergenic 45.0%
TTCTGCTCTCTTACATTCCC+TGG - tig0024078:6078-6097 None:intergenic 45.0%
TGATTATCCATCCGCTACAG+AGG + tig0024078:6112-6131 Msa1413950:CDS 45.0%
! AAACTAACCTCTGTAGCGGA+TGG - tig0024078:6122-6141 None:intergenic 45.0%
GAGCTGGAATAATGAAAGCG+TGG + tig0024078:6369-6388 Msa1413950:intron 45.0%
! TGAAAGCGTGGAGAATGAGA+TGG + tig0024078:6381-6400 Msa1413950:CDS 45.0%
GTGTTGCAATCTCCAGTTGA+TGG - tig0024078:6652-6671 None:intergenic 45.0%
! CTTGCATGGTACCTTTTAGG+CGG + tig0024078:7090-7109 Msa1413950:intron 45.0%
! GAGAGGAGTATGAATGTTCC+AGG + tig0024078:7279-7298 Msa1413950:CDS 45.0%
! GCGTTTGTTGCTTGAGGAAA+CGG + tig0024078:7368-7387 Msa1413950:CDS 45.0%
! CGTTTGTTGCTTGAGGAAAC+GGG + tig0024078:7369-7388 Msa1413950:CDS 45.0%
AGTGTAGGACAGCCAAAATG+AGG - tig0024078:7510-7529 None:intergenic 45.0%
! AACTTGTTTGTCCTCGTTGG+AGG + tig0024078:7628-7647 Msa1413950:three_prime_UTR 45.0%
!! ACGTCGATTAGGAGCATCTC+TGG + tig0024078:923-942 Msa1413950:CDS 50.0%
!! ATCTCTGGATTGGTCTCGTG+AGG + tig0024078:938-957 Msa1413950:CDS 50.0%
TTTGTGGGGGGTTGAGAATC+TGG + tig0024078:1026-1045 Msa1413950:intron 50.0%
GACCGTATCTATAGGTGAGG+TGG + tig0024078:1351-1370 Msa1413950:intron 50.0%
TCATGCTTGGCAGGAAGTTC+AGG - tig0024078:1759-1778 None:intergenic 50.0%
AGGACCCTACTAAAGGTTCC+AGG + tig0024078:2367-2386 Msa1413950:CDS 50.0%
! TACCCTTTGGAAGGGAACCT+AGG + tig0024078:2433-2452 Msa1413950:CDS 50.0%
CACCTAGGTTCCCTTCCAAA+GGG - tig0024078:2438-2457 None:intergenic 50.0%
TCACCTAGGTTCCCTTCCAA+AGG - tig0024078:2439-2458 None:intergenic 50.0%
GTTGATCCAAAGTTCGGGAC+AGG + tig0024078:2613-2632 Msa1413950:CDS 50.0%
! CATGCCTCGATTTAAGGCTC+GGG + tig0024078:2859-2878 Msa1413950:CDS 50.0%
AACCGTGAACTAGGATTGGG+AGG + tig0024078:3155-3174 Msa1413950:intron 50.0%
GTCCTCCCAATCCTAGTTCA+CGG - tig0024078:3160-3179 None:intergenic 50.0%
AACTAGGATTGGGAGGACTG+AGG + tig0024078:3162-3181 Msa1413950:intron 50.0%
ACTTGAACTGCCTCAACAGC+AGG + tig0024078:3387-3406 Msa1413950:intron 50.0%
TCTTCATGCTGTCACGGATG+AGG + tig0024078:3689-3708 Msa1413950:CDS 50.0%
!! GAGAGCACTCCTCTGAAATG+TGG + tig0024078:3821-3840 Msa1413950:intron 50.0%
! GAAATGGGAGCATGCCAAGT+TGG - tig0024078:4474-4493 None:intergenic 50.0%
GGTGCATTTCACGACAGCTA+TGG + tig0024078:4581-4600 Msa1413950:CDS 50.0%
GCATTTCACGACAGCTATGG+TGG + tig0024078:4584-4603 Msa1413950:CDS 50.0%
TGGGTGCGTACAATGACCAT+TGG + tig0024078:4662-4681 Msa1413950:CDS 50.0%
GGGTGCGTACAATGACCATT+GGG + tig0024078:4663-4682 Msa1413950:CDS 50.0%
TGAAGAAGAGGCCAGAGATG+AGG + tig0024078:4699-4718 Msa1413950:CDS 50.0%
!! CCTTTGGTTAGCCTCATCTC+TGG - tig0024078:4713-4732 None:intergenic 50.0%
CCAGAGATGAGGCTAACCAA+AGG + tig0024078:4710-4729 Msa1413950:CDS 50.0%
! ACCCTGACGTTCTGGATACA+TGG + tig0024078:4764-4783 Msa1413950:CDS 50.0%
TCCCTTTGACTGTACTGGGA+TGG + tig0024078:4803-4822 Msa1413950:CDS 50.0%
GCCATCCCAGTACAGTCAAA+GGG - tig0024078:4807-4826 None:intergenic 50.0%
CTCAAGTCGTCTGTGTCATC+AGG - tig0024078:4829-4848 None:intergenic 50.0%
CTGATGACACAGACGACTTG+AGG + tig0024078:4827-4846 Msa1413950:CDS 50.0%
CCCATGATTCGTGATGCACA+TGG + tig0024078:5303-5322 Msa1413950:CDS 50.0%
TGCCATAGAGGGTCAGAAGA+AGG + tig0024078:5449-5468 Msa1413950:CDS 50.0%
GTCCTTCTTCTGACCCTCTA+TGG - tig0024078:5454-5473 None:intergenic 50.0%
ACGATTTGCCATGAGCAAGC+TGG + tig0024078:5707-5726 Msa1413950:CDS 50.0%
CGATTTGCCATGAGCAAGCT+GGG + tig0024078:5708-5727 Msa1413950:CDS 50.0%
! ATCATCTCCCAGCTTGCTCA+TGG - tig0024078:5718-5737 None:intergenic 50.0%
ATCTCCCATTTAGCTGCCAG+TGG + tig0024078:5769-5788 Msa1413950:CDS 50.0%
CCACCAAGAATACACAGCAG+TGG - tig0024078:5868-5887 None:intergenic 50.0%
CCACTGCTGTGTATTCTTGG+TGG + tig0024078:5865-5884 Msa1413950:CDS 50.0%
TGGCAAAAGAGAGACGTGAC+AGG + tig0024078:6440-6459 Msa1413950:CDS 50.0%
AGAGAGACGTGACAGGTATG+TGG + tig0024078:6447-6466 Msa1413950:intron 50.0%
GAGAGACGTGACAGGTATGT+GGG + tig0024078:6448-6467 Msa1413950:intron 50.0%
GGAACTTTCTGCCTCATGCA+AGG - tig0024078:7442-7461 None:intergenic 50.0%
GCTCTCCCAACGTTACGTTT+AGG + tig0024078:7652-7671 Msa1413950:three_prime_UTR 50.0%
ACTGCACCTGTCCCGAACTT+TGG - tig0024078:2622-2641 None:intergenic 55.0%
GCTTCCCGAGCCTTAAATCG+AGG - tig0024078:2866-2885 None:intergenic 55.0%
TAGGATTGGGAGGACTGAGG+AGG + tig0024078:3165-3184 Msa1413950:intron 55.0%
AGGATTGGGAGGACTGAGGA+GGG + tig0024078:3166-3185 Msa1413950:intron 55.0%
GGAGGCTCTTCATGCTGTCA+CGG + tig0024078:3683-3702 Msa1413950:CDS 55.0%
! AGGGGTGGGCTCAAGCATTA+TGG - tig0024078:3860-3879 None:intergenic 55.0%
GGGGTCACCAAATTCCTGCA+TGG + tig0024078:4605-4624 Msa1413950:CDS 55.0%
TATCCAGAACGTCAGGGTCC+CGG - tig0024078:4762-4781 None:intergenic 55.0%
GGCCATCCCAGTACAGTCAA+AGG - tig0024078:4808-4827 None:intergenic 55.0%
TGAGACCAGCGCAAAACGGA+GGG - tig0024078:5511-5530 None:intergenic 55.0%
ATGAGACCAGCGCAAAACGG+AGG - tig0024078:5512-5531 None:intergenic 55.0%
! GCTGGTCTCATACACAGCTC+AGG + tig0024078:5521-5540 Msa1413950:CDS 55.0%
TACATTCCCTGGGCGAAGGA+AGG - tig0024078:6067-6086 None:intergenic 55.0%
CTCTTACATTCCCTGGGCGA+AGG - tig0024078:6071-6090 None:intergenic 55.0%
AGACGTGACAGGTATGTGGG+AGG + tig0024078:6451-6470 Msa1413950:intron 55.0%
GTTCGGCAGAGAGCAAAAGC+TGG - tig0024078:6602-6621 None:intergenic 55.0%
TGCTCTCTGCCGAACACATG+TGG + tig0024078:6607-6626 Msa1413950:CDS 55.0%
GTTCGGGACAGGTGCAGTGA+AGG + tig0024078:2624-2643 Msa1413950:CDS 60.0%
AATCCGGGACCCTGACGTTC+TGG + tig0024078:4756-4775 Msa1413950:CDS 60.0%
! TGATGCCCTCCGTTTTGCGC+TGG + tig0024078:5503-5522 Msa1413950:CDS 60.0%
! GGGTGGTTGGGTATCGCCAA+TGG + tig0024078:5661-5680 Msa1413950:CDS 60.0%
GAGAGCAAAAGCTGGTCGCC+TGG - tig0024078:6594-6613 None:intergenic 60.0%
!! TTGGGAGAGCACCTCCAACG+AGG - tig0024078:7642-7661 None:intergenic 60.0%
GCCTCAACAGCAGGTGCACG+AGG + tig0024078:3396-3415 Msa1413950:intron 65.0%
GCCTCGTGCACCTGCTGTTG+AGG - tig0024078:3400-3419 None:intergenic 65.0%
GCAACGCCTTCCTTCGCCCA+GGG + tig0024078:6058-6077 Msa1413950:CDS 65.0%
GGCAACGCCTTCCTTCGCCC+AGG + tig0024078:6057-6076 Msa1413950:CDS 70.0%
Chromosome Type Strat End Strand Name
tig0024078 gene 689 7726 689 ID=Msa1413950;Name=Msa1413950
tig0024078 mRNA 689 7726 689 ID=Msa1413950-mRNA-1;Parent=Msa1413950;Name=Msa1413950-mRNA-1;_AED=0.05;_eAED=0.05;_QI=0|0.92|0.85|1|1|1|14|319|869
tig0024078 exon 689 766 689 ID=Msa1413950-mRNA-1:exon:21483;Parent=Msa1413950-mRNA-1
tig0024078 exon 876 959 876 ID=Msa1413950-mRNA-1:exon:21484;Parent=Msa1413950-mRNA-1
tig0024078 exon 1285 1364 1285 ID=Msa1413950-mRNA-1:exon:21485;Parent=Msa1413950-mRNA-1
tig0024078 exon 2211 2268 2211 ID=Msa1413950-mRNA-1:exon:21486;Parent=Msa1413950-mRNA-1
tig0024078 exon 2343 2645 2343 ID=Msa1413950-mRNA-1:exon:21487;Parent=Msa1413950-mRNA-1
tig0024078 exon 2740 2910 2740 ID=Msa1413950-mRNA-1:exon:21488;Parent=Msa1413950-mRNA-1
tig0024078 exon 3564 3763 3564 ID=Msa1413950-mRNA-1:exon:21489;Parent=Msa1413950-mRNA-1
tig0024078 exon 4558 4960 4558 ID=Msa1413950-mRNA-1:exon:21490;Parent=Msa1413950-mRNA-1
tig0024078 exon 5291 5542 5291 ID=Msa1413950-mRNA-1:exon:21491;Parent=Msa1413950-mRNA-1
tig0024078 exon 5633 6133 5633 ID=Msa1413950-mRNA-1:exon:21492;Parent=Msa1413950-mRNA-1
tig0024078 exon 6370 6461 6370 ID=Msa1413950-mRNA-1:exon:21493;Parent=Msa1413950-mRNA-1
tig0024078 exon 6595 6694 6595 ID=Msa1413950-mRNA-1:exon:21494;Parent=Msa1413950-mRNA-1
tig0024078 exon 6828 6970 6828 ID=Msa1413950-mRNA-1:exon:21495;Parent=Msa1413950-mRNA-1
tig0024078 exon 7263 7726 7263 ID=Msa1413950-mRNA-1:exon:21496;Parent=Msa1413950-mRNA-1
tig0024078 CDS 689 766 689 ID=Msa1413950-mRNA-1:cds;Parent=Msa1413950-mRNA-1
tig0024078 CDS 876 959 876 ID=Msa1413950-mRNA-1:cds;Parent=Msa1413950-mRNA-1
tig0024078 CDS 1285 1364 1285 ID=Msa1413950-mRNA-1:cds;Parent=Msa1413950-mRNA-1
tig0024078 CDS 2211 2268 2211 ID=Msa1413950-mRNA-1:cds;Parent=Msa1413950-mRNA-1
tig0024078 CDS 2343 2645 2343 ID=Msa1413950-mRNA-1:cds;Parent=Msa1413950-mRNA-1
tig0024078 CDS 2740 2910 2740 ID=Msa1413950-mRNA-1:cds;Parent=Msa1413950-mRNA-1
tig0024078 CDS 3564 3763 3564 ID=Msa1413950-mRNA-1:cds;Parent=Msa1413950-mRNA-1
tig0024078 CDS 4558 4960 4558 ID=Msa1413950-mRNA-1:cds;Parent=Msa1413950-mRNA-1
tig0024078 CDS 5291 5542 5291 ID=Msa1413950-mRNA-1:cds;Parent=Msa1413950-mRNA-1
tig0024078 CDS 5633 6133 5633 ID=Msa1413950-mRNA-1:cds;Parent=Msa1413950-mRNA-1
tig0024078 CDS 6370 6461 6370 ID=Msa1413950-mRNA-1:cds;Parent=Msa1413950-mRNA-1
tig0024078 CDS 6595 6694 6595 ID=Msa1413950-mRNA-1:cds;Parent=Msa1413950-mRNA-1
tig0024078 CDS 6828 6970 6828 ID=Msa1413950-mRNA-1:cds;Parent=Msa1413950-mRNA-1
tig0024078 CDS 7263 7407 7263 ID=Msa1413950-mRNA-1:cds;Parent=Msa1413950-mRNA-1
tig0024078 three_prime_UTR 7408 7726 7408 ID=Msa1413950-mRNA-1:three_prime_utr;Parent=Msa1413950-mRNA-1
Gene Sequence

>Msa1413950

GTAGTTGTGGAGAAAAAGATAATGCGTGAGAAGAAACTCACAAGACATGATCTGGGTCGTGAAAAATTTATCTCAGAGGTTTGGGAATGGAAAAACAAGTATGGGGGCACAATTTTGCAACAATTACGTCGATTAGGAGCATCTCTGGATTGGTCTCGTGAGTGCTTCACAATGGATGACAAGAGATCTAAGGCTGTAACAGAGGCTTTTGTAAGGCTTTACAAGCTAGACCGTATCTATAGAGACGTACGGTTAGTGAATTGGGATTGTGTGTTACGTACGGCAGTATCTGATATTGAGGTGGATTATATTGAGATAAAAGAAAGGACCCTACTAAAGGTTCCAGGATACGACAAACCTGTTGAATTTGGAGTTTTAAAAAAATTTGCATACCCTTTGGAAGGGAACCTAGGTGAAATTGTTGTTGCCACAACTAGGATTGAAACTATGCTTGGTGATACTGCTATTGCCGTTCATCCTGAAGATAAACGTTACGAACAATTTCATGGAAAATATGCTGTTCACCCATTTAATGGCAGAAAGATTCCTATAATATGTGATGCTATTCTTGTTGATCCAAAGTTCGGGACAGGTGCAGTGAAGATTACACCGGCCCATGATCCCAATGATTTTGAGGTTGGAAAACGTCACAACCTTGAATTTATTAACGTTTTCACTGACGATGGGAAAGTAAATTCCAATGGTGGCTCAGCATTTTTGGACATGCCTCGATTTAAGGCTCGGGAAGCAATAACAGAAGCATTACAAAAGGAGGGTCTTTATAGAGGATCTGAAAATAACGAGATGCGCCTTGGTGTATGTTCAAGAAGCAACGATGTTATAGAGCCAATGATAAAGCCACAATGGTATGTCAATTGCAGTGATATTGCAAAGGAGGCTCTTCATGCTGTCACGGATGAGGAAAACAGAAGGGTAGAGATTATTCCAAAACAATATGTGGCTGATTGGAAGAGATGGCTGGAAAACATTCGTGATTGGTGCATTTCACGACAGCTATGGTGGGGTCACCAAATTCCTGCATGGTATGTCACTTTAGAGGATGATGTACTGCAGGAATTGGGTGCGTACAATGACCATTGGGTAGTGGCAAAAAATGAAGAAGAGGCCAGAGATGAGGCTAACCAAAGGTATCATGGAAAGAAGTTTCATTTAATCCGGGACCCTGACGTTCTGGATACATGGTTTTCTTCTGGTCTGTTCCCTTTGACTGTACTGGGATGGCCTGATGACACAGACGACTTGAGGGCATTTTATCCAACTTCTGTTTTGGAAACTGGCCATGATATCCTCTTTTTCTGGGTTGCTCGTATGGTTATGTTAGGAATGAAGTTGGGAGGTGATGTGCCTTTTAGCAAGATTTATTTGCACCCCATGATTCGTGATGCACATGGACGCAAGATGTCCAAGTCTTTGGGGAATGTTATTGATCCCATTGAGGTGATAAACGGGATAACACTAGAAGGTCTACATACAAGGTTAGAAGGTGGTAACCTTGACCCTAAAGAACTAGCTGTTGCCATAGAGGGTCAGAAGAAGGACTTTCCAAATGGTATCGAGGAATGTGGTGCTGATGCCCTCCGTTTTGCGCTGGTCTCATACACAGCTCAGTCTGACAAAATTAACCTAGATATTCAAAGGGTGGTTGGGTATCGCCAATGGTGCAATAAACTATGGAATGCGGTACGATTTGCCATGAGCAAGCTGGGAGATGATTATATCCCTCCTGCAAATTTGACTCCAGATAATCTCCCATTTAGCTGCCAGTGGATACTATCTGTGTTGAATAAAACCATATCGAAAGTAACCAAGTCTCTAGAATTGTACGAGTTCTCGCAAGCTACCACTGCTGTGTATTCTTGGTGGCAGTATCAATTGTGTGATGTGTTTATTGAAGTGATCAAGCCTTACTTTTCTGGCAGTGATCCCAACTTTCCTTCTGAAAGACGGTTTGCTCAAGACACTTTGTGGTTTTGTCTGGACAATGGCCTGCGATTGCTTCATCCTTTTATGCCTTTTGTCACGGAAGAATTGTGGCAACGCCTTCCTTCGCCCAGGGAATGTAAGAGAGCAGAATCTATCATGATAGCTGATTATCCATCCGCTACAGAGAGCTGGAATAATGAAAGCGTGGAGAATGAGATGGACCTCATTGAGTCTACTGTTAAGTCTATCAGATCACTGGCAAAAGAGAGACGTGACAGGCGACCAGCTTTTGCTCTCTGCCGAACACATGTGGTTAAAGAGATTATTAACAGCCATCAACTGGAGATTGCAACACTAGCTAATCTATCCTCTTTTACTGTGATCACTGAAATTGAAGCTGATCTTTCTGGATACGCTGATACTGTCGTAAATGAAAGCCTTTCTGTGTATTTAGAGCTTCAAACAATTAATTCTGAAGATGCTAGGCTTGGAAAGATGAAGAAGATAGATGAGCTGAAAAAGCAAATAGAAAGATTAGAGAGGAGTATGAATGTTCCAGGTTATAAAGAGAACGTTTCGCAACAAATTCAATCGAAGAATGAGGAGAAGCTAGAATCCCTAAAGAAGCGTTTGTTGCTTGAGGAAACGGGTGTACTGAGTATCTAG
Protein sequence

>Msa1413950

VVVEKKIMREKKLTRHDLGREKFISEVWEWKNKYGGTILQQLRRLGASLDWSRECFTMDDKRSKAVTEAFVRLYKLDRIYRDVRLVNWDCVLRTAVSDIEVDYIEIKERTLLKVPGYDKPVEFGVLKKFAYPLEGNLGEIVVATTRIETMLGDTAIAVHPEDKRYEQFHGKYAVHPFNGRKIPIICDAILVDPKFGTGAVKITPAHDPNDFEVGKRHNLEFINVFTDDGKVNSNGGSAFLDMPRFKAREAITEALQKEGLYRGSENNEMRLGVCSRSNDVIEPMIKPQWYVNCSDIAKEALHAVTDEENRRVEIIPKQYVADWKRWLENIRDWCISRQLWWGHQIPAWYVTLEDDVLQELGAYNDHWVVAKNEEEARDEANQRYHGKKFHLIRDPDVLDTWFSSGLFPLTVLGWPDDTDDLRAFYPTSVLETGHDILFFWVARMVMLGMKLGGDVPFSKIYLHPMIRDAHGRKMSKSLGNVIDPIEVINGITLEGLHTRLEGGNLDPKELAVAIEGQKKDFPNGIEECGADALRFALVSYTAQSDKINLDIQRVVGYRQWCNKLWNAVRFAMSKLGDDYIPPANLTPDNLPFSCQWILSVLNKTISKVTKSLELYEFSQATTAVYSWWQYQLCDVFIEVIKPYFSGSDPNFPSERRFAQDTLWFCLDNGLRLLHPFMPFVTEELWQRLPSPRECKRAESIMIADYPSATESWNNESVENEMDLIESTVKSIRSLAKERRDRRPAFALCRTHVVKEIINSHQLEIATLANLSSFTVITEIEADLSGYADTVVNESLSVYLELQTINSEDARLGKMKKIDELKKQIERLERSMNVPGYKENVSQQIQSKNEEKLESLKKRLLLEETGVLSI*