AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1417450

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1417450 MtrunA17_Chr3g0132951 99.420 517 3 0 1 517 1 517 0.0 1073
Msa1417450 MtrunA17_Chr5g0412251 70.378 503 142 2 15 517 8 503 0.0 741
Msa1417450 MtrunA17_Chr4g0043911 38.126 459 249 11 67 517 118 549 9.47e-103 319
Msa1417450 MtrunA17_Chr2g0284071 38.144 485 270 14 54 516 165 641 4.57e-100 315
Msa1417450 MtrunA17_Chr1g0160781 37.473 459 252 11 67 517 117 548 1.42e-99 311
Msa1417450 MtrunA17_Chr3g0123521 35.892 443 252 8 84 517 130 549 2.14e-97 305
Msa1417450 MtrunA17_Chr3g0077321 38.210 458 231 12 76 516 123 545 1.30e-96 303
Msa1417450 MtrunA17_Chr3g0132371 34.848 462 243 7 75 516 116 539 8.72e-95 298
Msa1417450 MtrunA17_Chr5g0424241 40.141 426 218 10 102 515 159 559 1.34e-92 294
Msa1417450 MtrunA17_Chr5g0426591 34.125 463 250 8 75 517 86 513 1.73e-90 286
Msa1417450 MtrunA17_Chr4g0042711 37.011 435 225 9 94 515 91 489 1.63e-87 278
Msa1417450 MtrunA17_Chr2g0307971 34.624 465 242 11 74 512 76 504 6.53e-84 269
Msa1417450 MtrunA17_Chr5g0417871 36.425 442 229 11 90 515 72 477 1.04e-83 268
Msa1417450 MtrunA17_Chr5g0448581 35.317 504 269 16 23 516 44 500 1.06e-83 270
Msa1417450 MtrunA17_Chr4g0061781 34.672 473 240 10 74 512 68 505 5.08e-83 266
Msa1417450 MtrunA17_Chr1g0204121 36.166 459 250 13 66 517 54 476 8.59e-83 266
Msa1417450 MtrunA17_Chr6g0455571 35.664 429 228 10 99 514 114 507 1.62e-81 263
Msa1417450 MtrunA17_Chr4g0075311 35.776 464 271 14 74 517 137 593 1.81e-80 262
Msa1417450 MtrunA17_Chr3g0129981 33.270 523 276 12 17 515 38 511 3.21e-79 257
Msa1417450 MtrunA17_Chr5g0399311 37.471 427 226 13 93 515 116 505 5.19e-78 254
Msa1417450 MtrunA17_Chr1g0204141 34.764 466 250 15 66 517 54 479 1.45e-77 252
Msa1417450 MtrunA17_Chr4g0056061 35.915 426 232 12 94 515 101 489 1.73e-77 253
Msa1417450 MtrunA17_Chr4g0070551 34.783 460 247 12 72 517 199 619 1.75e-77 255
Msa1417450 MtrunA17_Chr3g0143821 33.400 500 278 15 33 515 31 492 1.11e-76 251
Msa1417450 MtrunA17_Chr4g0008451 32.308 455 255 10 75 515 206 621 9.88e-73 243
Msa1417450 MtrunA17_Chr5g0436321 33.643 431 232 11 100 516 161 551 8.64e-70 233
Msa1417450 MtrunA17_Chr3g0087291 33.405 464 240 9 73 515 141 556 5.64e-68 228
Msa1417450 MtrunA17_Chr4g0010511 33.857 446 242 10 83 515 211 616 8.69e-68 229
Msa1417450 MtrunA17_Chr4g0003561 29.360 453 252 14 72 515 45 438 6.85e-49 174
Msa1417450 MtrunA17_Chr1g0146501 29.305 331 188 10 98 415 88 385 3.74e-32 130
Msa1417450 MtrunA17_Chr3g0127811 29.448 326 185 10 98 417 61 347 6.48e-30 122
Msa1417450 MtrunA17_Chr7g0220381 28.319 339 195 7 94 418 92 396 1.84e-29 122
Msa1417450 MtrunA17_Chr2g0298881 25.333 375 210 10 82 452 17 325 9.42e-24 102
Msa1417450 MtrunA17_Chr4g0002361 25.064 391 221 14 67 452 55 378 8.03e-23 100
Msa1417450 MtrunA17_Chr7g0240241 41.600 125 63 3 292 410 3 123 8.28e-21 88.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1417450 AT4G24530.1 74.225 516 133 0 1 516 2 517 0.0 817
Msa1417450 AT5G65470.1 73.461 471 121 2 47 515 34 502 0.0 732
Msa1417450 AT1G35510.1 38.612 461 242 10 67 516 127 557 4.96e-100 313
Msa1417450 AT3G26370.1 34.956 452 252 8 80 517 134 557 5.01e-97 305
Msa1417450 AT2G01480.1 37.174 460 250 13 67 516 122 552 9.53e-97 304
Msa1417450 AT1G14970.2 37.556 450 237 12 80 516 15 433 2.69e-94 294
Msa1417450 AT1G14970.1 36.402 478 258 14 53 516 108 553 1.63e-93 296
Msa1417450 AT1G38065.2 38.747 431 221 10 100 515 26 428 2.94e-93 292
Msa1417450 AT1G38065.1 38.747 431 221 10 100 515 36 438 6.23e-93 291
Msa1417450 AT1G29200.4 39.024 451 251 10 84 516 50 494 7.18e-93 292
Msa1417450 AT1G29200.1 39.024 451 251 10 84 516 50 494 7.18e-93 292
Msa1417450 AT1G14970.3 37.383 428 228 9 100 516 9 407 4.99e-92 287
Msa1417450 AT1G38131.1 38.747 431 221 10 100 515 155 557 1.78e-91 291
Msa1417450 AT1G29200.2 39.024 451 251 10 84 516 166 610 2.40e-91 291
Msa1417450 AT1G29200.3 39.100 422 237 9 109 516 5 420 1.94e-88 278
Msa1417450 AT1G62330.1 36.717 463 259 13 72 515 202 649 5.34e-87 281
Msa1417450 AT1G22460.1 33.333 462 250 7 75 516 135 558 1.78e-85 275
Msa1417450 AT2G01480.2 36.597 429 236 11 67 487 122 522 4.05e-85 273
Msa1417450 AT3G02250.1 34.542 469 243 12 75 514 65 498 1.15e-84 271
Msa1417450 AT4G38390.1 35.714 448 248 10 75 517 95 507 4.33e-84 271
Msa1417450 AT5G15740.1 33.902 469 246 12 75 514 65 498 1.40e-83 268
Msa1417450 AT1G20550.1 37.674 430 222 12 91 515 101 489 9.04e-83 268
Msa1417450 AT1G11990.2 35.957 470 270 12 74 517 148 612 1.29e-82 269
Msa1417450 AT5G64600.1 35.394 469 233 11 73 515 90 514 1.76e-82 266
Msa1417450 AT1G11990.1 36.184 456 251 11 74 517 163 590 1.97e-82 268
Msa1417450 AT1G14020.1 37.296 429 220 10 100 515 91 483 2.20e-81 262
Msa1417450 AT1G76270.1 36.830 429 225 12 92 515 99 486 1.96e-80 262
Msa1417450 AT1G04910.1 34.490 461 255 13 65 516 53 475 3.93e-80 259
Msa1417450 AT2G03280.1 37.529 429 218 11 100 514 88 480 5.62e-80 258
Msa1417450 AT2G37980.1 33.991 456 246 12 75 515 200 615 5.34e-78 257
Msa1417450 AT5G35570.1 32.563 476 270 10 53 515 203 640 2.18e-74 248
Msa1417450 AT3G54100.1 32.308 455 255 10 75 515 196 611 3.94e-74 247
Msa1417450 AT2G03280.2 35.307 456 218 12 100 514 88 507 4.81e-74 243
Msa1417450 AT4G16650.2 35.924 476 256 16 47 516 72 504 5.67e-74 244
Msa1417450 AT4G16650.1 35.924 476 256 16 47 516 72 504 5.67e-74 244
Msa1417450 AT2G44500.1 34.437 453 255 7 71 515 143 561 7.27e-72 239
Msa1417450 AT5G01100.1 31.510 457 258 10 75 515 191 608 2.24e-70 237
Msa1417450 AT3G07900.1 31.510 457 257 8 74 515 157 572 6.10e-68 229
Msa1417450 AT5G63390.1 32.314 458 264 8 69 516 128 549 2.53e-66 224
Msa1417450 AT3G26370.2 37.828 267 129 5 80 337 134 372 1.76e-59 202
Msa1417450 AT1G52630.1 27.938 451 259 15 73 516 45 436 9.17e-50 177
Msa1417450 AT1G52630.2 27.047 403 230 14 119 516 5 348 1.51e-39 147
Msa1417450 AT2G44500.2 32.770 296 160 5 71 361 143 404 2.74e-39 148
Msa1417450 AT3G03810.2 29.333 375 205 13 74 427 61 396 4.97e-36 142
Msa1417450 AT3G03810.1 29.333 375 205 13 74 427 61 396 4.97e-36 142
Msa1417450 AT3G30300.2 29.129 333 198 8 97 420 97 400 6.95e-31 127
Msa1417450 AT3G30300.1 29.129 333 198 8 97 420 97 400 6.95e-31 127
Msa1417450 AT3G21190.1 25.490 357 197 9 100 452 90 381 5.81e-21 95.9
Msa1417450 AT1G51630.1 24.930 357 199 9 100 452 91 382 7.65e-21 95.5

Find 126 sgRNAs with CRISPR-Local

Find 321 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCCCATTCAGCTTGTGATTT+TGG 0.068002 tig0024475:-54554 Msa1417450:CDS
CAGACCAAACATGGCACTTT+TGG 0.192496 tig0024475:-53783 Msa1417450:CDS
TTGCACTCACAAGGTGAATT+TGG 0.192542 tig0024475:+57607 None:intergenic
GTTCCACACGTTAAGGAATT+AGG 0.206831 tig0024475:-55384 Msa1417450:CDS
CTTTAGCTTAATTGCACTTA+TGG 0.213357 tig0024475:-53577 Msa1417450:three_prime_UTR
TCCCAATCTCTTCCAACCTT+TGG 0.221205 tig0024475:-58056 Msa1417450:CDS
GGATTGCTTCTAGCTGCTTT+GGG 0.237021 tig0024475:-54398 Msa1417450:CDS
TCAACTCTTCATCATTGAAT+TGG 0.253038 tig0024475:+54459 None:intergenic
GAAGAGATTGGGAATGAAAA+AGG 0.269105 tig0024475:+58066 None:intergenic
CCCAATCTCTTCCAACCTTT+GGG 0.276481 tig0024475:-58055 Msa1417450:CDS
TTGCTGTTTCCCAAGCTTAT+CGG 0.280991 tig0024475:+55284 None:intergenic
TGGATTGCTTCTAGCTGCTT+TGG 0.294168 tig0024475:-54399 Msa1417450:CDS
AGGAGCACTCTTCCAGTCTT+TGG 0.299985 tig0024475:+53522 None:intergenic
CATCTTCATTTCGGCTTCTC+CGG 0.300796 tig0024475:-54006 Msa1417450:CDS
AATGGTGTTAAGTTTGAAAA+TGG 0.309210 tig0024475:-58232 None:intergenic
TAGAACTTGATTTGTTTATA+CGG 0.319161 tig0024475:+53482 None:intergenic
CTAAATACCGGCAGGTGATT+TGG 0.320489 tig0024475:-54502 Msa1417450:CDS
CAACTCTTCATCATTGAATT+GGG 0.327093 tig0024475:+54460 None:intergenic
GAGACAATGGCCAAAGTTAA+TGG 0.337935 tig0024475:-54080 Msa1417450:CDS
GCACAGCGACATCTTCATTT+CGG 0.365352 tig0024475:-54015 Msa1417450:CDS
AGAAGCAATCCAATCTCTTC+GGG 0.388321 tig0024475:+54410 None:intergenic
AGCTTCCTGGTGAGTACTCT+TGG 0.391715 tig0024475:-56796 Msa1417450:CDS
TACTTGCAGGGGTATTCTGT+TGG 0.391759 tig0024475:-53295 Msa1417450:intron
GAACTTTGTTCCACACGTTA+AGG 0.393106 tig0024475:-55391 Msa1417450:CDS
CGGTACAAGGTTTCCATCCT+TGG 0.393966 tig0024475:+57635 None:intergenic
TTTCAGCGTGCGGTTCTTGA+TGG 0.397111 tig0024475:-53722 Msa1417450:CDS
ACCAAAATCACAAGCTGAAT+GGG 0.400153 tig0024475:+54553 None:intergenic
TGATGAAGAGTTGAGAAATC+AGG 0.404730 tig0024475:-54450 Msa1417450:CDS
GTATACAGAAAATGTATTGC+CGG 0.409053 tig0024475:-56696 Msa1417450:CDS
CGATGCCTTTCCATTAACTT+TGG 0.411811 tig0024475:+54070 None:intergenic
CACCAAAATCACAAGCTGAA+TGG 0.427593 tig0024475:+54552 None:intergenic
ACCCAAAGGTTGGAAGAGAT+TGG 0.429198 tig0024475:+58054 None:intergenic
AGCGCTGCCCGAAAAGTCTC+GGG 0.432285 tig0024475:-57486 Msa1417450:CDS
TAGAAGCAATCCAATCTCTT+CGG 0.438821 tig0024475:+54409 None:intergenic
TACCTTGAATCTTGCCAGAC+AGG 0.439319 tig0024475:+56974 None:intergenic
TTCACATACCTCTGAAGAAC+CGG 0.439622 tig0024475:+56677 None:intergenic
ATCTTCATTTCGGCTTCTCC+GGG 0.439681 tig0024475:-54005 Msa1417450:CDS
GGAGTTACGGAGAAGATAGA+AGG 0.440993 tig0024475:+58022 None:intergenic
CCAAGCTTATCGGCTTCCTC+TGG 0.444477 tig0024475:+55294 None:intergenic
CATCCAGCGTCTCCGTTGTA+AGG 0.448928 tig0024475:-55430 Msa1417450:CDS
CCACTGACTCCCGAAGAGAT+TGG 0.458973 tig0024475:-54419 Msa1417450:CDS
AATGTGACGTGTCTAGGTTT+AGG 0.460189 tig0024475:+57896 None:intergenic
CTCCCTTGGCTTACCAAGGA+TGG 0.461393 tig0024475:-57648 Msa1417450:CDS
TCTATAGTGAAAGAGCTTCC+TGG 0.462447 tig0024475:-56809 Msa1417450:CDS
GAATTTGGAGGCACGGTACA+AGG 0.465090 tig0024475:+57622 None:intergenic
ATCCTGTCTGGCAAGATTCA+AGG 0.465671 tig0024475:-56976 Msa1417450:intron
TGGCCCAAAAGTGCCATGTT+TGG 0.467421 tig0024475:+53779 None:intergenic
AATAGTCATTTGATTCTGCT+TGG 0.470389 tig0024475:+55319 None:intergenic
GGGAAAGAGAATGACGAAAA+CGG 0.471070 tig0024475:+58087 None:intergenic
CAATCTGCGGTAGCATGAAC+TGG 0.471934 tig0024475:+56719 None:intergenic
CCAGAGGAAGCCGATAAGCT+TGG 0.472576 tig0024475:-55294 Msa1417450:CDS
AGGTTTATGGTGGAAAAGCT+AGG 0.473316 tig0024475:-54163 Msa1417450:CDS
CACTCACAAGGTGAATTTGG+AGG 0.474199 tig0024475:+57610 None:intergenic
TGCTCTTATTCTGAAATAGC+TGG 0.476445 tig0024475:+53759 None:intergenic
CCCAAAGGTTGGAAGAGATT+GGG 0.478014 tig0024475:+58055 None:intergenic
CTACACATGCAATCAGGAGC+AGG 0.479880 tig0024475:+53638 None:intergenic
CAGCGCTGCCCGAAAAGTCT+CGG 0.480836 tig0024475:-57487 Msa1417450:CDS
CAGAGGAAGCCGATAAGCTT+GGG 0.483277 tig0024475:-55293 Msa1417450:CDS
ATACCGGCAGGTGATTTGGC+AGG 0.495911 tig0024475:-54498 Msa1417450:CDS
GGATTGAACCAGCAGAAGAT+GGG 0.496714 tig0024475:-57437 Msa1417450:CDS
TCTCATCGCTTGACATTCAA+CGG 0.499133 tig0024475:-55465 Msa1417450:CDS
AGGATTGAACCAGCAGAAGA+TGG 0.499974 tig0024475:-57438 Msa1417450:CDS
TTATGGTGGAAAAGCTAGGT+TGG 0.500381 tig0024475:-54159 Msa1417450:CDS
AACCAATCTGTGGTCTCCCT+TGG 0.504923 tig0024475:-57662 Msa1417450:CDS
TGTAGCAATGTGACGTGTCT+AGG 0.506331 tig0024475:+57890 None:intergenic
TAAGCTCTACACATGCAATC+AGG 0.507747 tig0024475:+53632 None:intergenic
TAGACACGTCACATTGCTAC+AGG 0.507958 tig0024475:-57888 Msa1417450:CDS
GGGCAATATGCACAATGCTC+TGG 0.515544 tig0024475:-53985 Msa1417450:intron
AGCTTGGGAAACAGCAAAGC+GGG 0.516102 tig0024475:-55278 Msa1417450:CDS
GGGACAGATAAGATTAAGAA+AGG 0.523765 tig0024475:-53684 Msa1417450:CDS
AGCTGGGCAATAAACCTTGT+GGG 0.537721 tig0024475:+54343 None:intergenic
GATGTAAGATAGCCAAAGAC+TGG 0.537999 tig0024475:-53534 Msa1417450:three_prime_UTR
TGCTCTAGCTAAATACCGGC+AGG 0.538557 tig0024475:-54510 Msa1417450:CDS
AACTTGCTCTAGCTAAATAC+CGG 0.541940 tig0024475:-54514 Msa1417450:CDS
GATGAAGAGTTGAGAAATCA+GGG 0.542902 tig0024475:-54449 Msa1417450:CDS
TTCCCTGCCAAATCACCTGC+CGG 0.544202 tig0024475:+54495 None:intergenic
GATTGCTTCTAGCTGCTTTG+GGG 0.545630 tig0024475:-54397 Msa1417450:CDS
TTTCCATCCTTGGTAAGCCA+AGG 0.550395 tig0024475:+57645 None:intergenic
CCAATCTCTTCGGGAGTCAG+TGG 0.550645 tig0024475:+54419 None:intergenic
AGCCAAGGGAGACCACAGAT+TGG 0.555485 tig0024475:+57660 None:intergenic
TGGTCTCCCTTGGCTTACCA+AGG 0.559168 tig0024475:-57652 Msa1417450:CDS
AGAGCATTGTGCATATTGCC+CGG 0.559884 tig0024475:+53987 None:intergenic
GTGAAGCACGACCCAAAGGT+TGG 0.560984 tig0024475:+58044 None:intergenic
CAGGATTCACTTCAAAATGC+GGG 0.561562 tig0024475:+56993 None:intergenic
GTGCTCCAAGAGTACTCACC+AGG 0.562409 tig0024475:+56791 None:intergenic
CAGTTCATGCTACCGCAGAT+TGG 0.569656 tig0024475:-56718 Msa1417450:CDS
TGATGGACATAAGAACAGAC+AGG 0.569668 tig0024475:-53705 Msa1417450:CDS
TGACCTTACAACGGAGACGC+TGG 0.575199 tig0024475:+55427 None:intergenic
TTCCATCCTTGGTAAGCCAA+GGG 0.578859 tig0024475:+57646 None:intergenic
GCTGGTTCAATCCTCCATCA+AGG 0.585087 tig0024475:+57447 None:intergenic
ATGTATTGCCGGTTCTTCAG+AGG 0.591620 tig0024475:-56685 Msa1417450:intron
TCTAGTCTCTGCAGAGACAA+TGG 0.592187 tig0024475:-54093 Msa1417450:CDS
TCATTGTGACAATTCTGAAG+CGG 0.592462 tig0024475:+58164 None:intergenic
GAAGGTGAAGCACGACCCAA+AGG 0.595361 tig0024475:+58040 None:intergenic
CGGAGACGCTGGATGTCTGA+TGG 0.599897 tig0024475:+55438 None:intergenic
ACAAGAGAGTACTATGCCAC+AGG 0.599956 tig0024475:-56770 Msa1417450:CDS
TTCAGAATAAGAGCATAGGC+TGG 0.602241 tig0024475:-53751 Msa1417450:CDS
GAAGACTATCAGACCAAACA+TGG 0.603497 tig0024475:-53792 Msa1417450:CDS
GATTGAACCAGCAGAAGATG+GGG 0.605571 tig0024475:-57436 Msa1417450:CDS
TCTCCTAATTCCTTAACGTG+TGG 0.606004 tig0024475:+55381 None:intergenic
AATGTCAAGCGATGAGAGAA+CGG 0.606541 tig0024475:+55471 None:intergenic
TACCGGCAGGTGATTTGGCA+GGG 0.608982 tig0024475:-54497 Msa1417450:CDS
CTATTTCAGAATAAGAGCAT+AGG 0.610443 tig0024475:-53755 Msa1417450:CDS
CTGGTCAGAATTTCAGCGTG+CGG 0.613267 tig0024475:-53732 Msa1417450:CDS
GCGATGAGAGAACGGTGCAA+TGG 0.614616 tig0024475:+55479 None:intergenic
TGTAGCGAAGACGCTGAACA+AGG 0.614908 tig0024475:+55355 None:intergenic
ACTTTATCTTGCTTCCCACA+AGG 0.615688 tig0024475:-54357 Msa1417450:intron
CAATCTCTTCGGGAGTCAGT+GGG 0.624514 tig0024475:+54420 None:intergenic
CGGCGAGCATTCTGTCAAAG+AGG 0.625715 tig0024475:+53502 None:intergenic
AATGGCCAAAGTTAATGGAA+AGG 0.628911 tig0024475:-54075 Msa1417450:CDS
ACAAGGTGAATTTGGAGGCA+CGG 0.632017 tig0024475:+57615 None:intergenic
TTGAAGTACAAACCAATCTG+TGG 0.642304 tig0024475:-57672 Msa1417450:CDS
TACACATGCAATCAGGAGCA+GGG 0.643795 tig0024475:+53639 None:intergenic
ACAGGATTCACTTCAAAATG+CGG 0.644514 tig0024475:+56992 None:intergenic
TCAAGTTCTAAATACAACCT+CGG 0.654372 tig0024475:-53469 Msa1417450:intron
TCTAGTAGCTCTAATGCCTG+TGG 0.656159 tig0024475:+56754 None:intergenic
TCACTATAGATACTTCGTCA+CGG 0.662049 tig0024475:+56822 None:intergenic
ATCAAATGACTATTTGCCAG+AGG 0.666329 tig0024475:-55310 Msa1417450:CDS
AGACACGTCACATTGCTACA+GGG 0.677204 tig0024475:-57887 Msa1417450:CDS
TCTTTGGCTATCTTACATCA+CGG 0.693397 tig0024475:+53538 None:intergenic
GCGCTGCCCGAAAAGTCTCG+GGG 0.696935 tig0024475:-57485 Msa1417450:CDS
CTTCAAAGTTGACCTTACAA+CGG 0.697428 tig0024475:+55418 None:intergenic
ATTGAACCAGCAGAAGATGG+GGG 0.706327 tig0024475:-57435 Msa1417450:intron
GATGGACATAAGAACAGACA+GGG 0.720717 tig0024475:-53704 Msa1417450:CDS
ATGAAGAGTTGAGAAATCAG+GGG 0.726296 tig0024475:-54448 Msa1417450:CDS
AAGCTTGGGAAACAGCAAAG+CGG 0.733658 tig0024475:-55279 Msa1417450:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTATTTTTCTATTAAAATTC+AGG - tig0024475:53887-53906 Msa1417450:intron 10.0%
!! AACAAAAATTGAAAAATTAT+TGG + tig0024475:56435-56454 None:intergenic 10.0%
!!! TAAATTGTCATTTATATAAT+TGG + tig0024475:56814-56833 None:intergenic 10.0%
!!! ATTATTTATTTTTGAAAACT+CGG + tig0024475:58024-58043 None:intergenic 10.0%
!! TTTAGATAAAATAGAGTATA+AGG + tig0024475:54211-54230 None:intergenic 15.0%
!!! ATCTTTTAAATAGAAAATGT+GGG + tig0024475:54391-54410 None:intergenic 15.0%
!!! TATCTTTTAAATAGAAAATG+TGG + tig0024475:54392-54411 None:intergenic 15.0%
!! ATAAAAAATTGAAGACATAA+AGG + tig0024475:54529-54548 None:intergenic 15.0%
!!! TATTTTCAGTTATTTTCTAT+AGG + tig0024475:55178-55197 None:intergenic 15.0%
!!! TATTATTTATATAGCTTGTT+TGG + tig0024475:55258-55277 None:intergenic 15.0%
!! TCTAAGAAAGAAAAATTATT+TGG - tig0024475:55497-55516 Msa1417450:intron 15.0%
!! TAAAATTCTAAATATGCTTA+CGG - tig0024475:55844-55863 Msa1417450:intron 15.0%
!!! ATGTTTTTTTCAGAAAATTA+AGG - tig0024475:56833-56852 Msa1417450:CDS 15.0%
!! ATTAAAATAACACATACGAT+CGG + tig0024475:53678-53697 None:intergenic 20.0%
!!! TAAATGAGATTGTTTTGAAA+GGG - tig0024475:54044-54063 Msa1417450:CDS 20.0%
!! AAAGGTAATTAATACTTCAT+TGG + tig0024475:54174-54193 None:intergenic 20.0%
!! TGATTAGAATATGTCTTTAA+AGG + tig0024475:54350-54369 None:intergenic 20.0%
!!! TAAAATTTTGAATGTAACGT+TGG - tig0024475:54432-54451 Msa1417450:CDS 20.0%
!! AAATAACAACTCAGTATAAA+TGG + tig0024475:54557-54576 None:intergenic 20.0%
!!! TCAACACATTTTCTATATAA+TGG + tig0024475:54863-54882 None:intergenic 20.0%
!!! ATTTCCATGATATAATTTGT+AGG - tig0024475:54916-54935 Msa1417450:intron 20.0%
!! AAAACCTACAAATTATATCA+TGG + tig0024475:54923-54942 None:intergenic 20.0%
!! TAATCCATTGGAAAAAAATA+AGG - tig0024475:55016-55035 Msa1417450:intron 20.0%
!! ACAGTTTAAGAAAAAATTCT+GGG - tig0024475:55041-55060 Msa1417450:intron 20.0%
!! TTAGATTGAAAAATATGGAT+GGG + tig0024475:55346-55365 None:intergenic 20.0%
!! AGTTGTTAGATTGAAAAATA+TGG + tig0024475:55351-55370 None:intergenic 20.0%
!! TGATAACAAACAAAGAAAAT+AGG + tig0024475:55428-55447 None:intergenic 20.0%
!!! TATGTGCAATTTTTTGTTTT+AGG - tig0024475:55585-55604 Msa1417450:intron 20.0%
!! TGTGATATTTATAAGAATGA+AGG + tig0024475:55800-55819 None:intergenic 20.0%
!! ATTTATATAATTGGATCACA+AGG + tig0024475:56805-56824 None:intergenic 20.0%
!!! ATTCTATGTTTTTAGGTTTA+TGG - tig0024475:57276-57295 Msa1417450:intron 20.0%
!!! TAGAACTTGATTTGTTTATA+CGG + tig0024475:57973-57992 None:intergenic 20.0%
!!! ATTTTCAATTCATGCAATTA+AGG - tig0024475:58180-58199 Msa1417450:five_prime_UTR 20.0%
!!! TTTTCAATTCATGCAATTAA+GGG - tig0024475:58181-58200 Msa1417450:five_prime_UTR 20.0%
!! CAATTTTTCACGATTAATTG+AGG + tig0024475:53469-53488 None:intergenic 25.0%
!!! TATATTCAAGTTTTCCTTGA+TGG - tig0024475:53991-54010 Msa1417450:CDS 25.0%
!!! GTAAATGAGATTGTTTTGAA+AGG - tig0024475:54043-54062 Msa1417450:CDS 25.0%
! TAATTTCATTGCAGAAATGA+AGG - tig0024475:54069-54088 Msa1417450:CDS 25.0%
! AATTTCATTGCAGAAATGAA+GGG - tig0024475:54070-54089 Msa1417450:CDS 25.0%
! GATTATGAGACAATAATTGA+TGG + tig0024475:55001-55020 None:intergenic 25.0%
! ATTATTGTCTCATAATCCAT+TGG - tig0024475:55004-55023 Msa1417450:intron 25.0%
! GACAGTTTAAGAAAAAATTC+TGG - tig0024475:55040-55059 Msa1417450:intron 25.0%
! GGGAAAAAAATTACAGTTTA+AGG - tig0024475:55143-55162 Msa1417450:intron 25.0%
! GTTAGATTGAAAAATATGGA+TGG + tig0024475:55347-55366 None:intergenic 25.0%
! CTATTTGAGTCAATAAACTA+TGG + tig0024475:55455-55474 None:intergenic 25.0%
!! ATTTTTCTTTCTTAGATCCT+AGG + tig0024475:55493-55512 None:intergenic 25.0%
!!! AAAATTATTTGGTTCTTCCA+AGG - tig0024475:55508-55527 Msa1417450:intron 25.0%
!!! TGTTTTAATAACTCCACATA+TGG - tig0024475:55728-55747 Msa1417450:intron 25.0%
! CGTAAATAATGCATATCTAA+AGG + tig0024475:55895-55914 None:intergenic 25.0%
! AATCTACAACATTTGAAAAC+AGG + tig0024475:55924-55943 None:intergenic 25.0%
!! CTTGTCTTTCTAATTTTACT+TGG - tig0024475:56278-56297 Msa1417450:intron 25.0%
! TGTGATTACAGTATTATAAG+CGG - tig0024475:56319-56338 Msa1417450:intron 25.0%
!!! GTCTGTTTTAAATACCTTTT+AGG - tig0024475:56564-56583 Msa1417450:intron 25.0%
!! ATGTGTTTAAAATTTGAACG+AGG - tig0024475:56655-56674 Msa1417450:intron 25.0%
! TTTCTATTAACTGCAGTTTA+AGG - tig0024475:56754-56773 Msa1417450:CDS 25.0%
!!! TGGATTGATTCTATGTTTTT+AGG - tig0024475:57269-57288 Msa1417450:intron 25.0%
!! CTTTTCTTATCTTCCATAAA+AGG + tig0024475:57339-57358 None:intergenic 25.0%
!! TGGTTTAAACGGTAAATTTT+GGG + tig0024475:57594-57613 None:intergenic 25.0%
!! TTGGTTTAAACGGTAAATTT+TGG + tig0024475:57595-57614 None:intergenic 25.0%
!! CAAAAGATGTTTGGTTTAAA+CGG + tig0024475:57605-57624 None:intergenic 25.0%
AAGAGATTGGGAATGAAAAA+GGG + tig0024475:53388-53407 None:intergenic 30.0%
AAATGGAAAATGAGGAGTTA+CGG + tig0024475:53446-53465 None:intergenic 30.0%
AATTGAGGAAATGGAAAATG+AGG + tig0024475:53454-53473 None:intergenic 30.0%
TTCACGATTAATTGAGGAAA+TGG + tig0024475:53463-53482 None:intergenic 30.0%
TTTATGAATCACCTAATTGC+TGG - tig0024475:53496-53515 Msa1417450:three_prime_UTR 30.0%
! GATTTTTGATACCAGCAATT+AGG + tig0024475:53510-53529 None:intergenic 30.0%
CAAAAATCGATTGTGATTTC+AGG - tig0024475:53522-53541 Msa1417450:three_prime_UTR 30.0%
AATGCTTCCAATACAATTGA+CGG - tig0024475:53703-53722 Msa1417450:CDS 30.0%
ACATGACACTTAATATGAGA+CGG + tig0024475:54117-54136 None:intergenic 30.0%
CTCATATTAAGTGTCATGTT+TGG - tig0024475:54118-54137 Msa1417450:CDS 30.0%
AAGGATATATCAGTGGAAAA+AGG + tig0024475:54192-54211 None:intergenic 30.0%
AGAGTATAAGGATATATCAG+TGG + tig0024475:54199-54218 None:intergenic 30.0%
ATTCAAGGTATATCTAGTGT+GGG - tig0024475:54491-54510 Msa1417450:CDS 30.0%
! ATTTTCTGTATACCAATCTG+CGG + tig0024475:54749-54768 None:intergenic 30.0%
GTATACAGAAAATGTATTGC+CGG - tig0024475:54756-54775 Msa1417450:intron 30.0%
AAAACCTAAATGCATTTCAG+GGG + tig0024475:54839-54858 None:intergenic 30.0%
CAAAACCTAAATGCATTTCA+GGG + tig0024475:54840-54859 None:intergenic 30.0%
ATCATGGAAATCCATTGTAA+GGG + tig0024475:54907-54926 None:intergenic 30.0%
TATCATGGAAATCCATTGTA+AGG + tig0024475:54908-54927 None:intergenic 30.0%
!!! GTCTCCTTATTTTTTTCCAA+TGG + tig0024475:55023-55042 None:intergenic 30.0%
GTTTAAGAAAAAATTCTGGG+TGG - tig0024475:55044-55063 Msa1417450:intron 30.0%
!! AAAAACAACACTGACTTGAT+TGG + tig0024475:55122-55141 None:intergenic 30.0%
!!! ATCAAGTCAGTGTTGTTTTT+TGG - tig0024475:55122-55141 Msa1417450:intron 30.0%
!!! TCAAGTCAGTGTTGTTTTTT+GGG - tig0024475:55123-55142 Msa1417450:intron 30.0%
!! TATTGACTCAAATAGTTGTC+AGG - tig0024475:55460-55479 Msa1417450:CDS 30.0%
! ATTGACTCAAATAGTTGTCA+GGG - tig0024475:55461-55480 Msa1417450:CDS 30.0%
ACTATGTAAATTCCAACCTT+GGG + tig0024475:55559-55578 None:intergenic 30.0%
AACTATGTAAATTCCAACCT+TGG + tig0024475:55560-55579 None:intergenic 30.0%
! TTTTCTCGTTGATACAGTTA+TGG - tig0024475:55942-55961 Msa1417450:intron 30.0%
AATAGTCATTTGATTCTGCT+TGG + tig0024475:56136-56155 None:intergenic 30.0%
TGCCAGGATTCAAAAAATTA+TGG - tig0024475:56251-56270 Msa1417450:intron 30.0%
GCCAGGATTCAAAAAATTAT+GGG - tig0024475:56252-56271 Msa1417450:intron 30.0%
!!! ACCCATAATTTTTTGAATCC+TGG + tig0024475:56256-56275 None:intergenic 30.0%
!! TAAGCGGAATATAGTTTGTT+AGG - tig0024475:56335-56354 Msa1417450:intron 30.0%
TATAACCAGAACTCTACAAT+AGG + tig0024475:56690-56709 None:intergenic 30.0%
TTAAGGCTCCTGTTAATTAA+TGG - tig0024475:56850-56869 Msa1417450:CDS 30.0%
CAACTCTTCATCATTGAATT+GGG + tig0024475:56995-57014 None:intergenic 30.0%
TCAACTCTTCATCATTGAAT+TGG + tig0024475:56996-57015 None:intergenic 30.0%
!! GTTTACTTTTGAACTTAGTC+TGG - tig0024475:57249-57268 Msa1417450:intron 30.0%
!!! CTATGTTTTTAGGTTTATGG+TGG - tig0024475:57279-57298 Msa1417450:intron 30.0%
!! AAGCACGTTATTTCCTTTTA+TGG - tig0024475:57323-57342 Msa1417450:intron 30.0%
! GGTTTAAACGGTAAATTTTG+GGG + tig0024475:57593-57612 None:intergenic 30.0%
! CTATTTCAGAATAAGAGCAT+AGG - tig0024475:57697-57716 Msa1417450:intron 30.0%
! CTTTAGCTTAATTGCACTTA+TGG - tig0024475:57875-57894 Msa1417450:CDS 30.0%
!! TCAAGTTCTAAATACAACCT+CGG - tig0024475:57983-58002 Msa1417450:intron 30.0%
GCTCAAATACTCAATACTAT+AGG + tig0024475:58096-58115 None:intergenic 30.0%
! TCATTGTGACAATTCTGAAG+CGG + tig0024475:53291-53310 None:intergenic 35.0%
!! ATTTTTGAGAGTGGTTGAGT+TGG + tig0024475:53333-53352 None:intergenic 35.0%
!! CAAAAGCTGATTTTTGAGAG+TGG + tig0024475:53342-53361 None:intergenic 35.0%
GAAGAGATTGGGAATGAAAA+AGG + tig0024475:53389-53408 None:intergenic 35.0%
ATCGATTGTGATTTCAGGAA+TGG - tig0024475:53527-53546 Msa1417450:three_prime_UTR 35.0%
AGTGTAATGTACTCACAGTT+CGG + tig0024475:53603-53622 None:intergenic 35.0%
TTGTACACCGTCAATTGTAT+TGG + tig0024475:53713-53732 None:intergenic 35.0%
TTGAAGTACAAACCAATCTG+TGG - tig0024475:53780-53799 Msa1417450:CDS 35.0%
TGAGTGCAAATCTGCATAAT+TGG - tig0024475:53859-53878 Msa1417450:intron 35.0%
!!! AGGACTGTTTTGTTTGTCAT+TGG - tig0024475:53907-53926 Msa1417450:intron 35.0%
! AATATAACCCCGAGACTTTT+CGG + tig0024475:53977-53996 None:intergenic 35.0%
!! ATTCAAGTTTTCCTTGATGG+AGG - tig0024475:53994-54013 Msa1417450:CDS 35.0%
ATGACACTTAATATGAGACG+GGG + tig0024475:54115-54134 None:intergenic 35.0%
CATGACACTTAATATGAGAC+GGG + tig0024475:54116-54135 None:intergenic 35.0%
ACAGGATTCACTTCAAAATG+CGG + tig0024475:54463-54482 None:intergenic 35.0%
!!! ATTTTGAAGTGAATCCTGTC+TGG - tig0024475:54464-54483 Msa1417450:CDS 35.0%
GATTCAAGGTATATCTAGTG+TGG - tig0024475:54490-54509 Msa1417450:CDS 35.0%
AACAACTCAGTATAAATGGC+TGG + tig0024475:54553-54572 None:intergenic 35.0%
TCACTATAGATACTTCGTCA+CGG + tig0024475:54633-54652 None:intergenic 35.0%
AAACCTAAATGCATTTCAGG+GGG + tig0024475:54838-54857 None:intergenic 35.0%
GCAAAACCTAAATGCATTTC+AGG + tig0024475:54841-54860 None:intergenic 35.0%
ATCTATTAAGACGATGCACT+AGG - tig0024475:55076-55095 Msa1417450:intron 35.0%
! ACAAAGGTATAATACTGTGC+TGG + tig0024475:55287-55306 None:intergenic 35.0%
TTGACTCAAATAGTTGTCAG+GGG - tig0024475:55462-55481 Msa1417450:CDS 35.0%
AAAACTTCCCACATAATCCT+TGG + tig0024475:55528-55547 None:intergenic 35.0%
TACAGCACTACATTAGAACT+AGG + tig0024475:55623-55642 None:intergenic 35.0%
ATCTAAAGGAAGACACTAAG+TGG + tig0024475:55881-55900 None:intergenic 35.0%
CTTCAAAGTTGACCTTACAA+CGG + tig0024475:56037-56056 None:intergenic 35.0%
ATCAAATGACTATTTGCCAG+AGG - tig0024475:56142-56161 Msa1417450:intron 35.0%
!!! CTTTTATGTAGAAGCATCAG+TGG + tig0024475:56535-56554 None:intergenic 35.0%
CACTGATGCTTCTACATAAA+AGG - tig0024475:56533-56552 Msa1417450:intron 35.0%
AAGCTGTAGTTACACCTAAA+AGG + tig0024475:56581-56600 None:intergenic 35.0%
GTCAGTGACCATTAATTAAC+AGG + tig0024475:56861-56880 None:intergenic 35.0%
ACCAAAATCACAAGCTGAAT+GGG + tig0024475:56902-56921 None:intergenic 35.0%
!! ATTCAGCTTGTGATTTTGGT+GGG - tig0024475:56902-56921 Msa1417450:intron 35.0%
! AACTTGCTCTAGCTAAATAC+CGG - tig0024475:56938-56957 Msa1417450:intron 35.0%
TGATGAAGAGTTGAGAAATC+AGG - tig0024475:57002-57021 Msa1417450:CDS 35.0%
GATGAAGAGTTGAGAAATCA+GGG - tig0024475:57003-57022 Msa1417450:CDS 35.0%
ATGAAGAGTTGAGAAATCAG+GGG - tig0024475:57004-57023 Msa1417450:CDS 35.0%
TAGAAGCAATCCAATCTCTT+CGG + tig0024475:57046-57065 None:intergenic 35.0%
AATATATCCTGTCATGAGCT+GGG + tig0024475:57128-57147 None:intergenic 35.0%
AATGGCCAAAGTTAATGGAA+AGG - tig0024475:57377-57396 Msa1417450:intron 35.0%
CTGAAGATGCAAAAGATGTT+TGG + tig0024475:57614-57633 None:intergenic 35.0%
! CAAACATCTTTTGCATCTTC+AGG - tig0024475:57612-57631 Msa1417450:intron 35.0%
!! TGCTCTTATTCTGAAATAGC+TGG + tig0024475:57696-57715 None:intergenic 35.0%
GGGACAGATAAGATTAAGAA+AGG - tig0024475:57768-57787 Msa1417450:intron 35.0%
TCTTTGGCTATCTTACATCA+CGG + tig0024475:57917-57936 None:intergenic 35.0%
GGGAAAGAGAATGACGAAAA+CGG + tig0024475:53368-53387 None:intergenic 40.0%
AATGTGACGTGTCTAGGTTT+AGG + tig0024475:53559-53578 None:intergenic 40.0%
TTGCACTCACAAGGTGAATT+TGG + tig0024475:53848-53867 None:intergenic 40.0%
TATGCAGATTTGCACTCACA+AGG + tig0024475:53857-53876 None:intergenic 40.0%
CAGCGCTGCAATAATCAAAA+GGG + tig0024475:53953-53972 None:intergenic 40.0%
! ATATAACCCCGAGACTTTTC+GGG + tig0024475:53976-53995 None:intergenic 40.0%
CAGGATTCACTTCAAAATGC+GGG + tig0024475:54462-54481 None:intergenic 40.0%
TCTATAGTGAAAGAGCTTCC+TGG - tig0024475:54643-54662 Msa1417450:intron 40.0%
! TTCACATACCTCTGAAGAAC+CGG + tig0024475:54778-54797 None:intergenic 40.0%
ACTTAACCTCAAATTCTGCC+AGG - tig0024475:54800-54819 Msa1417450:intron 40.0%
TTTCCCCCTGAAATGCATTT+AGG - tig0024475:54832-54851 Msa1417450:intron 40.0%
TTTGCAACTAGCCCTTACAA+TGG - tig0024475:54893-54912 Msa1417450:intron 40.0%
CTCTTAGTGAACTTCCAAGT+AGG - tig0024475:55379-55398 Msa1417450:CDS 40.0%
TGGTTCTTCCAAGGATTATG+TGG - tig0024475:55517-55536 Msa1417450:intron 40.0%
GGTTCTTCCAAGGATTATGT+GGG - tig0024475:55518-55537 Msa1417450:intron 40.0%
TGCCTTCCATTGCAGTATTT+AGG - tig0024475:55646-55665 Msa1417450:intron 40.0%
GCCTTCCATTGCAGTATTTA+GGG - tig0024475:55647-55666 Msa1417450:intron 40.0%
TCCCTAAATACTGCAATGGA+AGG + tig0024475:55651-55670 None:intergenic 40.0%
TCCATTGCAGTATTTAGGGA+AGG - tig0024475:55651-55670 Msa1417450:intron 40.0%
ACCTTCCCTAAATACTGCAA+TGG + tig0024475:55655-55674 None:intergenic 40.0%
TTGCAGTATTTAGGGAAGGT+TGG - tig0024475:55655-55674 Msa1417450:intron 40.0%
! AACAGTCTTTTGCAGATGTG+AGG + tig0024475:55712-55731 None:intergenic 40.0%
ATAAGAATGAAGGTGAGCCT+TGG + tig0024475:55790-55809 None:intergenic 40.0%
AATGTCAAGCGATGAGAGAA+CGG + tig0024475:55984-56003 None:intergenic 40.0%
TCTCATCGCTTGACATTCAA+CGG - tig0024475:55987-56006 Msa1417450:intron 40.0%
GAACTTTGTTCCACACGTTA+AGG - tig0024475:56061-56080 Msa1417450:intron 40.0%
GTTCCACACGTTAAGGAATT+AGG - tig0024475:56068-56087 Msa1417450:intron 40.0%
TCTCCTAATTCCTTAACGTG+TGG + tig0024475:56074-56093 None:intergenic 40.0%
!! TTGCTGTTTCCCAAGCTTAT+CGG + tig0024475:56171-56190 None:intergenic 40.0%
! GTCTTCATTTGCATTTTGCC+AGG - tig0024475:56235-56254 Msa1417450:intron 40.0%
TTAGGCAACAACTTGCATGT+TGG - tig0024475:56353-56372 Msa1417450:intron 40.0%
TAGGTGTAACTACAGCTTGA+AGG - tig0024475:56583-56602 Msa1417450:intron 40.0%
GCTAATACATTCACACACAC+AGG + tig0024475:56627-56646 None:intergenic 40.0%
ATCCTCCTATTGTAGAGTTC+TGG - tig0024475:56682-56701 Msa1417450:intron 40.0%
AACCAGAACTCTACAATAGG+AGG + tig0024475:56687-56706 None:intergenic 40.0%
CACCAAAATCACAAGCTGAA+TGG + tig0024475:56903-56922 None:intergenic 40.0%
! CATTCAGCTTGTGATTTTGG+TGG - tig0024475:56901-56920 Msa1417450:intron 40.0%
!! TTCAGCTTGTGATTTTGGTG+GGG - tig0024475:56903-56922 Msa1417450:intron 40.0%
AGAAGCAATCCAATCTCTTC+GGG + tig0024475:57045-57064 None:intergenic 40.0%
ACTTTATCTTGCTTCCCACA+AGG - tig0024475:57095-57114 Msa1417450:intron 40.0%
CAATATATCCTGTCATGAGC+TGG + tig0024475:57129-57148 None:intergenic 40.0%
! AGGTTTATGGTGGAAAAGCT+AGG - tig0024475:57289-57308 Msa1417450:intron 40.0%
! TTATGGTGGAAAAGCTAGGT+TGG - tig0024475:57293-57312 Msa1417450:intron 40.0%
GAGACAATGGCCAAAGTTAA+TGG - tig0024475:57372-57391 Msa1417450:intron 40.0%
CGATGCCTTTCCATTAACTT+TGG + tig0024475:57385-57404 None:intergenic 40.0%
TGTATTGCTGCAAGACATGT+AGG - tig0024475:57563-57582 Msa1417450:intron 40.0%
! ACATCTTTTGCATCTTCAGG+TGG - tig0024475:57615-57634 Msa1417450:intron 40.0%
GAAGACTATCAGACCAAACA+TGG - tig0024475:57660-57679 Msa1417450:CDS 40.0%
! AGACCAAACATGGCACTTTT+GGG - tig0024475:57670-57689 Msa1417450:CDS 40.0%
! TTCAGAATAAGAGCATAGGC+TGG - tig0024475:57701-57720 Msa1417450:intron 40.0%
! TGATGGACATAAGAACAGAC+AGG - tig0024475:57747-57766 Msa1417450:intron 40.0%
GATGGACATAAGAACAGACA+GGG - tig0024475:57748-57767 Msa1417450:intron 40.0%
TAAGCTCTACACATGCAATC+AGG + tig0024475:57823-57842 None:intergenic 40.0%
GATGTAAGATAGCCAAAGAC+TGG - tig0024475:57918-57937 Msa1417450:intron 40.0%
TAAATACAACCTCGGTCCTT+GGG - tig0024475:57991-58010 Msa1417450:intron 40.0%
TTGAGCTGTTCTACTCACAA+TGG - tig0024475:58110-58129 Msa1417450:CDS 40.0%
TACCCCTGCAAGTAGAATTT+GGG + tig0024475:58151-58170 None:intergenic 40.0%
ATACCCCTGCAAGTAGAATT+TGG + tig0024475:58152-58171 None:intergenic 40.0%
TCCCAATCTCTTCCAACCTT+TGG - tig0024475:53396-53415 Msa1417450:intron 45.0%
CCCAAAGGTTGGAAGAGATT+GGG + tig0024475:53400-53419 None:intergenic 45.0%
CCCAATCTCTTCCAACCTTT+GGG - tig0024475:53397-53416 Msa1417450:intron 45.0%
ACCCAAAGGTTGGAAGAGAT+TGG + tig0024475:53401-53420 None:intergenic 45.0%
GGAGTTACGGAGAAGATAGA+AGG + tig0024475:53433-53452 None:intergenic 45.0%
TGTAGCAATGTGACGTGTCT+AGG + tig0024475:53565-53584 None:intergenic 45.0%
TAGACACGTCACATTGCTAC+AGG - tig0024475:53564-53583 Msa1417450:three_prime_UTR 45.0%
AGACACGTCACATTGCTACA+GGG - tig0024475:53565-53584 Msa1417450:three_prime_UTR 45.0%
TTCCATCCTTGGTAAGCCAA+GGG + tig0024475:53809-53828 None:intergenic 45.0%
TTTCCATCCTTGGTAAGCCA+AGG + tig0024475:53810-53829 None:intergenic 45.0%
ACAAGGTGAATTTGGAGGCA+CGG + tig0024475:53840-53859 None:intergenic 45.0%
CACTCACAAGGTGAATTTGG+AGG + tig0024475:53845-53864 None:intergenic 45.0%
GCAGCGCTGCAATAATCAAA+AGG + tig0024475:53954-53973 None:intergenic 45.0%
AGGATTGAACCAGCAGAAGA+TGG - tig0024475:54014-54033 Msa1417450:CDS 45.0%
GGATTGAACCAGCAGAAGAT+GGG - tig0024475:54015-54034 Msa1417450:CDS 45.0%
GATTGAACCAGCAGAAGATG+GGG - tig0024475:54016-54035 Msa1417450:CDS 45.0%
ATTGAACCAGCAGAAGATGG+GGG - tig0024475:54017-54036 Msa1417450:CDS 45.0%
ATCCTGTCTGGCAAGATTCA+AGG - tig0024475:54476-54495 Msa1417450:CDS 45.0%
TACCTTGAATCTTGCCAGAC+AGG + tig0024475:54481-54500 None:intergenic 45.0%
!! ACAAGAGAGTACTATGCCAC+AGG - tig0024475:54682-54701 Msa1417450:intron 45.0%
!! TCTAGTAGCTCTAATGCCTG+TGG + tig0024475:54701-54720 None:intergenic 45.0%
!! ATGTATTGCCGGTTCTTCAG+AGG - tig0024475:54767-54786 Msa1417450:intron 45.0%
GCATTTCAGGGGGAAAATGA+GGG + tig0024475:54828-54847 None:intergenic 45.0%
TGCATTTCAGGGGGAAAATG+AGG + tig0024475:54829-54848 None:intergenic 45.0%
AATATGGATGGGTGACGTGA+CGG + tig0024475:55335-55354 None:intergenic 45.0%
TAGTGAACTTCCAAGTAGGC+AGG - tig0024475:55383-55402 Msa1417450:CDS 45.0%
!! ACAAAAAGTGCCTGCCTACT+TGG + tig0024475:55396-55415 None:intergenic 45.0%
AGTTGTCAGGGGATATACCT+AGG - tig0024475:55473-55492 Msa1417450:CDS 45.0%
! GAAGTTTTCTCACAGTCCCA+AGG - tig0024475:55540-55559 Msa1417450:intron 45.0%
! TTTTCTCACAGTCCCAAGGT+TGG - tig0024475:55544-55563 Msa1417450:intron 45.0%
GGAAGACACTAAGTGGCTTA+TGG + tig0024475:55874-55893 None:intergenic 45.0%
AAGCTTGGGAAACAGCAAAG+CGG - tig0024475:56173-56192 Msa1417450:intron 45.0%
TAATGGTCACTGACATGTGC+AGG - tig0024475:56867-56886 Msa1417450:CDS 45.0%
TCACTGACATGTGCAGGATA+TGG - tig0024475:56873-56892 Msa1417450:intron 45.0%
! GCCCATTCAGCTTGTGATTT+TGG - tig0024475:56898-56917 Msa1417450:intron 45.0%
!! TCAGCTTGTGATTTTGGTGG+GGG - tig0024475:56904-56923 Msa1417450:intron 45.0%
CTAAATACCGGCAGGTGATT+TGG - tig0024475:56950-56969 Msa1417450:intron 45.0%
! TGGATTGCTTCTAGCTGCTT+TGG - tig0024475:57053-57072 Msa1417450:intron 45.0%
! GGATTGCTTCTAGCTGCTTT+GGG - tig0024475:57054-57073 Msa1417450:intron 45.0%
! GATTGCTTCTAGCTGCTTTG+GGG - tig0024475:57055-57074 Msa1417450:intron 45.0%
AGCTGGGCAATAAACCTTGT+GGG + tig0024475:57112-57131 None:intergenic 45.0%
TTTATTGCCCAGCTCATGAC+AGG - tig0024475:57118-57137 Msa1417450:intron 45.0%
TCTAGTCTCTGCAGAGACAA+TGG - tig0024475:57359-57378 Msa1417450:intron 45.0%
GCACAGCGACATCTTCATTT+CGG - tig0024475:57437-57456 Msa1417450:CDS 45.0%
CATCTTCATTTCGGCTTCTC+CGG - tig0024475:57446-57465 Msa1417450:CDS 45.0%
ATCTTCATTTCGGCTTCTCC+GGG - tig0024475:57447-57466 Msa1417450:CDS 45.0%
!! AGAGCATTGTGCATATTGCC+CGG + tig0024475:57468-57487 None:intergenic 45.0%
! CAGACCAAACATGGCACTTT+TGG - tig0024475:57669-57688 Msa1417450:CDS 45.0%
TACACATGCAATCAGGAGCA+GGG + tig0024475:57816-57835 None:intergenic 45.0%
CTAAATACAACCTCGGTCCT+TGG - tig0024475:57990-58009 Msa1417450:intron 45.0%
TCTCCCCAAATTCTACTTGC+AGG - tig0024475:58144-58163 Msa1417450:CDS 45.0%
CTCCCCAAATTCTACTTGCA+GGG - tig0024475:58145-58164 Msa1417450:CDS 45.0%
TCCCCAAATTCTACTTGCAG+GGG - tig0024475:58146-58165 Msa1417450:CDS 45.0%
ACCCCTGCAAGTAGAATTTG+GGG + tig0024475:58150-58169 None:intergenic 45.0%
!! TACTTGCAGGGGTATTCTGT+TGG - tig0024475:58157-58176 Msa1417450:exon 45.0%
AACCAATCTGTGGTCTCCCT+TGG - tig0024475:53790-53809 Msa1417450:CDS 50.0%
CGGTACAAGGTTTCCATCCT+TGG + tig0024475:53820-53839 None:intergenic 50.0%
! GAATTTGGAGGCACGGTACA+AGG + tig0024475:53833-53852 None:intergenic 50.0%
! GCTGGTTCAATCCTCCATCA+AGG + tig0024475:54008-54027 None:intergenic 50.0%
TACTTACCCCCATCTTCTGC+TGG + tig0024475:54026-54045 None:intergenic 50.0%
AGCTTCCTGGTGAGTACTCT+TGG - tig0024475:54656-54675 Msa1417450:intron 50.0%
CAATCTGCGGTAGCATGAAC+TGG + tig0024475:54736-54755 None:intergenic 50.0%
CAGTTCATGCTACCGCAGAT+TGG - tig0024475:54734-54753 Msa1417450:intron 50.0%
AGGGAACCTGGCAGAATTTG+AGG + tig0024475:54809-54828 None:intergenic 50.0%
TGTGATCAGGAGGCCATATG+TGG + tig0024475:55744-55763 None:intergenic 50.0%
CATATGGCCTCCTGATCACA+CGG - tig0024475:55744-55763 Msa1417450:intron 50.0%
TGTAGCGAAGACGCTGAACA+AGG + tig0024475:56100-56119 None:intergenic 50.0%
CAGAGGAAGCCGATAAGCTT+GGG - tig0024475:56159-56178 Msa1417450:intron 50.0%
AGCTTGGGAAACAGCAAAGC+GGG - tig0024475:56174-56193 Msa1417450:intron 50.0%
TGCTCTAGCTAAATACCGGC+AGG - tig0024475:56942-56961 Msa1417450:intron 50.0%
CAATCTCTTCGGGAGTCAGT+GGG + tig0024475:57035-57054 None:intergenic 50.0%
GAGCTGGGCAATAAACCTTG+TGG + tig0024475:57113-57132 None:intergenic 50.0%
GGGCAATATGCACAATGCTC+TGG - tig0024475:57467-57486 Msa1417450:CDS 50.0%
!! TGGCCCAAAAGTGCCATGTT+TGG + tig0024475:57676-57695 None:intergenic 50.0%
CTACACATGCAATCAGGAGC+AGG + tig0024475:57817-57836 None:intergenic 50.0%
!! AGGAGCACTCTTCCAGTCTT+TGG + tig0024475:57933-57952 None:intergenic 50.0%
GTGAAGCACGACCCAAAGGT+TGG + tig0024475:53411-53430 None:intergenic 55.0%
GAAGGTGAAGCACGACCCAA+AGG + tig0024475:53415-53434 None:intergenic 55.0%
AGCCAAGGGAGACCACAGAT+TGG + tig0024475:53795-53814 None:intergenic 55.0%
TGGTCTCCCTTGGCTTACCA+AGG - tig0024475:53800-53819 Msa1417450:CDS 55.0%
CTCCCTTGGCTTACCAAGGA+TGG - tig0024475:53804-53823 Msa1417450:CDS 55.0%
!! GTGCTCCAAGAGTACTCACC+AGG + tig0024475:54664-54683 None:intergenic 55.0%
AGGGGGAAAATGAGGGAACC+TGG + tig0024475:54821-54840 None:intergenic 55.0%
CAGGTGGCAAGTGGCAACAA+AGG + tig0024475:55303-55322 None:intergenic 55.0%
ACAGACTGACAGGTGGCAAG+TGG + tig0024475:55312-55331 None:intergenic 55.0%
GTTGCTACCGTGTGATCAGG+AGG + tig0024475:55754-55773 None:intergenic 55.0%
GGAGTTGCTACCGTGTGATC+AGG + tig0024475:55757-55776 None:intergenic 55.0%
CAACTCCATTCATCGCGCCA+AGG - tig0024475:55770-55789 Msa1417450:intron 55.0%
GCGATGAGAGAACGGTGCAA+TGG + tig0024475:55976-55995 None:intergenic 55.0%
CATCCAGCGTCTCCGTTGTA+AGG - tig0024475:56022-56041 Msa1417450:intron 55.0%
TGACCTTACAACGGAGACGC+TGG + tig0024475:56028-56047 None:intergenic 55.0%
!! CCAAGCTTATCGGCTTCCTC+TGG + tig0024475:56161-56180 None:intergenic 55.0%
CCAGAGGAAGCCGATAAGCT+TGG - tig0024475:56158-56177 Msa1417450:intron 55.0%
! ATACCGGCAGGTGATTTGGC+AGG - tig0024475:56954-56973 Msa1417450:intron 55.0%
! TACCGGCAGGTGATTTGGCA+GGG - tig0024475:56955-56974 Msa1417450:intron 55.0%
TTCCCTGCCAAATCACCTGC+CGG + tig0024475:56960-56979 None:intergenic 55.0%
CCAATCTCTTCGGGAGTCAG+TGG + tig0024475:57036-57055 None:intergenic 55.0%
!! CCACTGACTCCCGAAGAGAT+TGG - tig0024475:57033-57052 Msa1417450:CDS 55.0%
CGGCGAGCATTCTGTCAAAG+AGG + tig0024475:57953-57972 None:intergenic 55.0%
ATACAACCTCGGTCCTTGGG+CGG - tig0024475:57994-58013 Msa1417450:intron 55.0%
AAAACTCGGTATCCCGCCCA+AGG + tig0024475:58010-58029 None:intergenic 55.0%
CAGCGCTGCCCGAAAAGTCT+CGG - tig0024475:53965-53984 Msa1417450:intron 60.0%
AGCGCTGCCCGAAAAGTCTC+GGG - tig0024475:53966-53985 Msa1417450:intron 60.0%
!! GTGACGGACAGACTGACAGG+TGG + tig0024475:55319-55338 None:intergenic 60.0%
!! GACGTGACGGACAGACTGAC+AGG + tig0024475:55322-55341 None:intergenic 60.0%
GTGAGCCTTGGCGCGATGAA+TGG + tig0024475:55778-55797 None:intergenic 60.0%
CGGAGACGCTGGATGTCTGA+TGG + tig0024475:56017-56036 None:intergenic 60.0%
TACAACCTCGGTCCTTGGGC+GGG - tig0024475:57995-58014 Msa1417450:intron 60.0%
GCGCTGCCCGAAAAGTCTCG+GGG - tig0024475:53967-53986 Msa1417450:intron 65.0%
GGTATCCCGCCCAAGGACCG+AGG + tig0024475:58003-58022 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
tig0024475 gene 53231 58243 53231 ID=Msa1417450;Name=Msa1417450
tig0024475 mRNA 53231 58243 53231 ID=Msa1417450-mRNA-1;Parent=Msa1417450;Name=Msa1417450-mRNA-1;_AED=0.29;_eAED=0.29;_QI=76|1|1|1|0.9|0.81|11|239|517
tig0024475 exon 53231 53308 53231 ID=Msa1417450-mRNA-1:exon:23484;Parent=Msa1417450-mRNA-1
tig0024475 exon 53470 53840 53470 ID=Msa1417450-mRNA-1:exon:23483;Parent=Msa1417450-mRNA-1
tig0024475 exon 53986 54183 53986 ID=Msa1417450-mRNA-1:exon:23482;Parent=Msa1417450-mRNA-1
tig0024475 exon 54358 54585 54358 ID=Msa1417450-mRNA-1:exon:23481;Parent=Msa1417450-mRNA-1
tig0024475 exon 55245 55515 55245 ID=Msa1417450-mRNA-1:exon:23480;Parent=Msa1417450-mRNA-1
tig0024475 exon 56686 56889 56686 ID=Msa1417450-mRNA-1:exon:23479;Parent=Msa1417450-mRNA-1
tig0024475 exon 56977 57065 56977 ID=Msa1417450-mRNA-1:exon:23478;Parent=Msa1417450-mRNA-1
tig0024475 exon 57436 57506 57436 ID=Msa1417450-mRNA-1:exon:23477;Parent=Msa1417450-mRNA-1
tig0024475 exon 57617 57698 57617 ID=Msa1417450-mRNA-1:exon:23476;Parent=Msa1417450-mRNA-1
tig0024475 exon 57868 57930 57868 ID=Msa1417450-mRNA-1:exon:23475;Parent=Msa1417450-mRNA-1
tig0024475 exon 58030 58243 58030 ID=Msa1417450-mRNA-1:exon:23474;Parent=Msa1417450-mRNA-1
tig0024475 five_prime_UTR 58168 58243 58168 ID=Msa1417450-mRNA-1:five_prime_utr;Parent=Msa1417450-mRNA-1
tig0024475 CDS 58030 58167 58030 ID=Msa1417450-mRNA-1:cds;Parent=Msa1417450-mRNA-1
tig0024475 CDS 57868 57930 57868 ID=Msa1417450-mRNA-1:cds;Parent=Msa1417450-mRNA-1
tig0024475 CDS 57617 57698 57617 ID=Msa1417450-mRNA-1:cds;Parent=Msa1417450-mRNA-1
tig0024475 CDS 57436 57506 57436 ID=Msa1417450-mRNA-1:cds;Parent=Msa1417450-mRNA-1
tig0024475 CDS 56977 57065 56977 ID=Msa1417450-mRNA-1:cds;Parent=Msa1417450-mRNA-1
tig0024475 CDS 56686 56889 56686 ID=Msa1417450-mRNA-1:cds;Parent=Msa1417450-mRNA-1
tig0024475 CDS 55245 55515 55245 ID=Msa1417450-mRNA-1:cds;Parent=Msa1417450-mRNA-1
tig0024475 CDS 54358 54585 54358 ID=Msa1417450-mRNA-1:cds;Parent=Msa1417450-mRNA-1
tig0024475 CDS 53986 54183 53986 ID=Msa1417450-mRNA-1:cds;Parent=Msa1417450-mRNA-1
tig0024475 CDS 53631 53840 53631 ID=Msa1417450-mRNA-1:cds;Parent=Msa1417450-mRNA-1
tig0024475 three_prime_UTR 53470 53630 53470 ID=Msa1417450-mRNA-1:three_prime_utr;Parent=Msa1417450-mRNA-1
tig0024475 three_prime_UTR 53231 53308 53231 ID=Msa1417450-mRNA-1:three_prime_utr;Parent=Msa1417450-mRNA-1
Gene Sequence

>Msa1417450

ATGAAGCTTCATCATCAATTGAACCAACTCAACCACTCTCAAAAATCAGCTTTTGTTGCCGTTTTCGTCATTCTCTTTCCCTTTTTCATTCCCAATCTCTTCCAACCTTTGGGTCGTGCTTCACCTTCTATCTTCTCCGAATGGATTGCTCCTAAACCTAGACACGTCACATTGCTACAGGGTGCTCTACAACGCCGAACTTCTGTTGAAGTACAAACCAATCTGTGGTCTCCCTTGGCTTACCAAGGATGGAAACCTTGTACCGTGCCTCCAAATTCACCTTCGCTGCCCGAAAAGTCTCGGGGTTATATTCAAGTTTTCCTTGATGGAGGATTGAACCAGCAGAAGATGGGGATATGTGATGCTGTTGCTGTTGCTAAAATTTTGAATGTAACGTTGGTGATCCCGCATTTTGAAGTGAATCCTGTCTGGCAAGATTCAAGTTCATTTGCAGATATATTTGACGTTGATCACTTCATTGATGTTCTCCGTGACGAAGTATCTATAGTGAAAGAGCTTCCTGGTGAGTACTCTTGGAGCACAAGAGAGTACTATGCCACAGGCATTAGAGCTACTAGAATTAAAACAGCGCCAGTTCATGCTACCGCAGATTGGTATACAGAAAATGTATTGCCGGTTCTTCAGAGTTATGGTGTTGCTGCCATTGCACCGTTCTCTCATCGCTTGACATTCAACGGCTTACCATCAGACATCCAGCGTCTCCGTTGTAAGGTCAACTTTGAAGCACTGAACTTTGTTCCACACGTTAAGGAATTAGGAGATATCCTTGTTCAGCGTCTTCGCTACAATTCTAGTATCAACCAAGCAGAATCAAATGACTATTTGCCAGAGGAAGCCGATAAGCTTGGGAAACAGCAAAGCGGGAAGTTTGTTGTGTTGCATCTGCGTTTTGATAAAGATATGGCAGCCCATTCAGCTTGTGATTTTGGTGGGGGTAAAGCTGAGAAACTTGCTCTAGCTAAATACCGGCAGGTGATTTGGCAGGGAAGAGTATTGAATTCCCAATTCAATGATGAAGAGTTGAGAAATCAGGGGCGTTGCCCACTGACTCCCGAAGAGATTGGATTGCTTCTAGCTGCTTTGGGGTTCAACAACAGAACACGACTTTATCTTGCTTCCCACAAGGTTTATGGTGGAAAAGCTAGGTTGGAAACTTTAAGCACGTTATTTCCTTTTATGGAAGATAAGAAAAGTCTAGTCTCTGCAGAGACAATGGCCAAAGTTAATGGAAAGGCATCGCTATTAGCTGCTGTTGATTATTATGTGAGCATGCACAGCGACATCTTCATTTCGGCTTCTCCGGGCAATATGCACAATGCTCTGGTGGCACATCGTGCTTATAAGAATCTGAAGACTATCAGACCAAACATGGCACTTTTGGGCCAGCTATTTCAGAATAAGAGCATAGGCTGGTCAGAATTTCAGCGTGCGGTTCTTGATGGACATAAGAACAGACAGGGACAGATAAGATTAAGAAAGGAGAAGCAATCAATTTATACATACCCTGCTCCTGATTGCATGTGTAGAGCTTAG
Protein sequence

>Msa1417450

MKLHHQLNQLNHSQKSAFVAVFVILFPFFIPNLFQPLGRASPSIFSEWIAPKPRHVTLLQGALQRRTSVEVQTNLWSPLAYQGWKPCTVPPNSPSLPEKSRGYIQVFLDGGLNQQKMGICDAVAVAKILNVTLVIPHFEVNPVWQDSSSFADIFDVDHFIDVLRDEVSIVKELPGEYSWSTREYYATGIRATRIKTAPVHATADWYTENVLPVLQSYGVAAIAPFSHRLTFNGLPSDIQRLRCKVNFEALNFVPHVKELGDILVQRLRYNSSINQAESNDYLPEEADKLGKQQSGKFVVLHLRFDKDMAAHSACDFGGGKAEKLALAKYRQVIWQGRVLNSQFNDEELRNQGRCPLTPEEIGLLLAALGFNNRTRLYLASHKVYGGKARLETLSTLFPFMEDKKSLVSAETMAKVNGKASLLAAVDYYVSMHSDIFISASPGNMHNALVAHRAYKNLKTIRPNMALLGQLFQNKSIGWSEFQRAVLDGHKNRQGQIRLRKEKQSIYTYPAPDCMCRA*