AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1420050

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1420050 MtrunA17_Chr2g0321631 87.402 254 24 5 1 251 1 249 4.97e-159 441
Msa1420050 MtrunA17_Chr4g0026141 59.398 266 86 9 1 250 1 260 2.93e-100 293
Msa1420050 MtrunA17_Chr7g0266701 46.970 264 115 7 1 251 1 252 1.86e-75 229
Msa1420050 MtrunA17_Chr6g0453131 42.105 171 88 5 1 164 12 178 2.75e-38 137
Msa1420050 MtrunA17_Chr4g0076731 44.872 156 78 3 6 161 56 203 4.81e-38 137
Msa1420050 MtrunA17_Chr4g0038751 43.195 169 83 5 6 172 17 174 2.76e-37 132
Msa1420050 MtrunA17_Chr5g0417791 45.455 154 79 4 5 157 4 153 2.80e-37 132
Msa1420050 MtrunA17_Chr8g0359921 47.059 153 76 4 5 157 15 162 3.30e-37 133
Msa1420050 MtrunA17_Chr2g0318081 46.405 153 75 4 5 157 17 162 1.50e-36 132
Msa1420050 MtrunA17_Chr6g0481091 36.000 200 121 4 5 203 7 200 1.86e-36 129
Msa1420050 MtrunA17_Chr5g0405211 42.935 184 93 7 5 185 9 183 2.66e-36 131
Msa1420050 MtrunA17_Chr5g0433781 36.404 228 121 7 5 223 7 219 4.47e-36 135
Msa1420050 MtrunA17_Chr1g0200561 50.382 131 58 5 5 132 20 146 6.99e-36 130
Msa1420050 MtrunA17_Chr2g0309331 46.970 132 62 4 5 132 11 138 1.03e-35 129
Msa1420050 MtrunA17_Chr5g0400461 45.625 160 70 6 5 156 7 157 1.98e-35 129
Msa1420050 MtrunA17_Chr4g0042561 43.506 154 82 4 5 157 10 159 2.46e-35 127
Msa1420050 MtrunA17_Chr2g0309891 44.805 154 79 5 5 157 7 155 2.59e-35 129
Msa1420050 MtrunA17_Chr8g0372121 51.145 131 57 6 5 132 7 133 4.56e-35 127
Msa1420050 MtrunA17_Chr4g0054791 35.514 214 120 6 5 206 7 214 1.00e-34 126
Msa1420050 MtrunA17_Chr8g0346001 37.073 205 107 9 5 196 16 211 1.07e-34 129
Msa1420050 MtrunA17_Chr3g0109821 42.949 156 79 5 5 157 7 155 1.97e-34 130
Msa1420050 MtrunA17_Chr4g0017921 42.593 162 80 6 5 163 9 160 2.03e-34 126
Msa1420050 MtrunA17_Chr5g0417001 34.579 214 123 8 6 210 16 221 7.00e-34 125
Msa1420050 MtrunA17_Chr4g0018391 47.328 131 62 5 5 132 8 134 7.02e-34 125
Msa1420050 MtrunA17_Chr3g0144271 45.513 156 78 5 5 158 24 174 8.16e-34 126
Msa1420050 MtrunA17_Chr8g0384721 40.936 171 88 6 5 170 8 170 1.31e-33 122
Msa1420050 MtrunA17_Chr8g0361731 40.252 159 85 4 6 157 16 171 1.57e-33 125
Msa1420050 MtrunA17_Chr2g0312321 43.137 153 79 5 5 157 12 156 1.92e-33 123
Msa1420050 MtrunA17_Chr1g0183741 43.871 155 74 6 5 157 11 154 2.24e-33 122
Msa1420050 MtrunA17_Chr7g0252971 39.506 162 86 4 5 157 9 167 2.44e-33 123
Msa1420050 MtrunA17_Chr4g0060931 40.000 155 88 4 3 157 16 165 2.77e-33 124
Msa1420050 MtrunA17_Chr2g0326361 32.271 251 148 7 5 239 15 259 3.71e-33 122
Msa1420050 MtrunA17_Chr4g0047841 41.341 179 81 6 5 162 16 191 6.20e-33 122
Msa1420050 MtrunA17_Chr5g0398971 47.328 131 63 5 5 132 8 135 7.15e-33 122
Msa1420050 MtrunA17_Chr3g0139331 41.975 162 85 5 2 162 9 162 7.52e-33 122
Msa1420050 MtrunA17_Chr3g0124761 44.375 160 82 5 5 163 8 161 9.94e-33 120
Msa1420050 MtrunA17_Chr3g0130731 42.073 164 88 5 5 167 8 165 1.35e-32 120
Msa1420050 MtrunA17_Chr1g0147421 45.185 135 65 4 2 132 25 154 1.44e-32 122
Msa1420050 MtrunA17_Chr2g0316971 45.736 129 66 3 5 132 24 149 1.68e-32 122
Msa1420050 MtrunA17_Chr3g0091921 42.308 156 79 5 5 157 17 164 2.43e-32 120
Msa1420050 MtrunA17_Chr7g0217711 44.882 127 66 3 6 132 21 143 2.77e-32 116
Msa1420050 MtrunA17_Chr7g0261411 42.857 154 77 5 5 157 11 154 3.24e-32 119
Msa1420050 MtrunA17_Chr4g0056541 42.308 156 78 7 5 157 8 154 3.58e-32 120
Msa1420050 MtrunA17_Chr6g0453451 40.120 167 95 4 5 171 21 182 4.60e-32 119
Msa1420050 MtrunA17_Chr6g0484441 40.385 156 84 5 2 157 3 149 4.67e-32 119
Msa1420050 MtrunA17_Chr2g0311651 39.674 184 95 7 2 171 19 200 6.73e-32 119
Msa1420050 MtrunA17_Chr2g0318101 38.220 191 98 7 5 184 16 197 2.22e-31 118
Msa1420050 MtrunA17_Chr7g0214071 42.949 156 75 6 5 158 16 159 5.55e-31 115
Msa1420050 MtrunA17_Chr7g0263931 40.000 160 91 4 5 162 12 168 5.68e-31 117
Msa1420050 MtrunA17_Chr3g0128111 41.830 153 80 6 7 157 45 190 5.81e-31 115
Msa1420050 MtrunA17_Chr3g0130101 39.490 157 88 5 6 161 9 159 1.43e-30 116
Msa1420050 MtrunA17_Chr7g0217721 45.238 126 65 3 7 132 22 143 4.21e-30 115
Msa1420050 MtrunA17_Chr7g0253011 38.608 158 90 4 3 157 16 169 6.91e-30 115
Msa1420050 MtrunA17_Chr6g0461661 41.221 131 73 3 3 132 17 144 7.69e-30 115
Msa1420050 MtrunA17_Chr5g0428991 42.208 154 82 5 5 157 26 173 8.90e-30 117
Msa1420050 MtrunA17_Chr8g0385991 42.038 157 83 4 5 158 15 166 1.13e-29 111
Msa1420050 MtrunA17_Chr2g0311661 38.922 167 88 5 2 156 18 182 1.59e-29 112
Msa1420050 MtrunA17_Chr5g0442771 38.750 160 87 4 6 157 20 176 5.63e-29 111
Msa1420050 MtrunA17_Chr1g0201021 44.361 133 70 3 4 135 19 148 7.45e-29 114
Msa1420050 MtrunA17_Chr3g0128151 40.909 154 84 5 5 157 23 170 1.01e-28 114
Msa1420050 MtrunA17_Chr8g0345671 41.026 156 80 5 3 156 10 155 1.65e-28 111
Msa1420050 MtrunA17_Chr3g0092671 37.342 158 92 4 6 162 7 158 2.05e-28 112
Msa1420050 MtrunA17_Chr1g0197351 38.462 156 89 4 6 157 44 196 2.67e-28 112
Msa1420050 MtrunA17_Chr8g0364791 38.961 154 85 6 6 157 8 154 3.34e-28 111
Msa1420050 MtrunA17_Chr8g0345711 40.441 136 77 4 5 138 13 146 2.04e-27 103
Msa1420050 MtrunA17_Chr1g0197361 35.443 158 95 4 6 162 10 161 5.54e-27 108
Msa1420050 MtrunA17_Chr3g0131911 40.252 159 84 4 5 157 15 168 7.62e-27 103
Msa1420050 MtrunA17_Chr8g0384201 37.342 158 90 6 6 161 8 158 1.75e-26 107
Msa1420050 MtrunA17_Chr8g0345691 37.342 158 87 5 1 156 9 156 2.20e-26 106
Msa1420050 MtrunA17_Chr2g0321741 43.925 107 57 2 25 131 13 116 2.79e-24 99.4
Msa1420050 MtrunA17_Chr4g0050701 41.538 130 62 5 5 132 12 129 3.01e-23 93.2
Msa1420050 MtrunA17_Chr8g0345731 39.394 132 73 5 5 131 25 154 1.27e-22 91.3
Msa1420050 MtrunA17_Chr8g0345721 34.337 166 76 4 7 141 38 201 3.47e-22 90.9
Msa1420050 MtrunA17_Chr8g0345701 37.415 147 70 7 5 134 8 149 3.79e-21 87.4
Msa1420050 MtrunA17_Chr8g0345741 37.815 119 70 4 15 131 2 118 4.82e-20 84.0
Msa1420050 MtrunA17_Chr3g0113001 52.113 71 33 1 62 132 20 89 6.96e-20 86.7
Msa1420050 MtrunA17_Chr3g0113031 56.140 57 24 1 76 132 9 64 6.68e-16 75.1
Msa1420050 MtrunA17_Chr3g0130321 29.012 162 100 4 5 159 8 161 3.52e-15 72.0
Msa1420050 MtrunA17_Chr7g0251661 31.206 141 91 3 3 142 9 144 2.05e-14 68.9
Msa1420050 MtrunA17_Chr7g0243371 40.449 89 47 3 58 144 14 98 2.86e-14 67.4
Msa1420050 MtrunA17_Chr8g0384351 31.373 153 78 6 5 157 11 136 6.96e-14 68.2
Msa1420050 MtrunA17_Chr7g0251651 31.250 128 82 3 5 131 19 141 3.74e-12 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1420050 AT5G22380.1 53.600 250 87 6 7 250 8 234 2.01e-82 246
Msa1420050 AT3G44350.2 50.794 252 107 6 2 250 3 240 3.82e-80 241
Msa1420050 AT3G44350.1 56.250 160 64 3 2 158 3 159 3.08e-58 182
Msa1420050 AT4G17980.1 45.455 154 79 4 5 156 7 157 4.31e-39 137
Msa1420050 AT4G17980.2 45.455 154 79 4 5 156 7 157 5.67e-39 137
Msa1420050 AT2G02450.1 44.737 152 76 3 6 157 53 196 1.19e-38 138
Msa1420050 AT2G02450.2 44.737 152 76 3 6 157 53 196 1.94e-38 139
Msa1420050 AT3G15500.1 48.366 153 72 5 5 157 15 160 2.37e-38 136
Msa1420050 AT2G17040.1 42.771 166 82 5 6 169 8 162 1.71e-37 133
Msa1420050 AT1G52890.1 47.059 153 74 5 5 157 15 160 3.11e-37 133
Msa1420050 AT5G66300.1 47.436 156 71 7 5 157 13 160 3.58e-37 132
Msa1420050 AT3G17730.1 37.895 190 105 5 5 193 7 184 6.81e-37 130
Msa1420050 AT4G27410.2 45.752 153 76 6 5 157 15 160 3.41e-36 130
Msa1420050 AT4G10350.1 42.408 191 93 9 5 189 10 189 4.55e-36 131
Msa1420050 AT5G46590.1 42.484 153 83 3 5 156 7 155 5.76e-36 129
Msa1420050 AT1G69490.1 43.396 159 85 4 5 162 10 164 9.95e-36 128
Msa1420050 AT3G12910.1 43.558 163 79 5 6 157 23 183 1.34e-35 129
Msa1420050 AT4G36160.1 43.023 172 77 7 5 173 11 164 1.84e-35 130
Msa1420050 AT4G36160.3 43.023 172 77 7 5 173 11 164 1.84e-35 130
Msa1420050 AT4G36160.2 43.023 172 77 7 5 173 15 168 2.19e-35 130
Msa1420050 AT2G18060.3 46.154 156 72 7 5 157 10 156 2.67e-35 129
Msa1420050 AT2G18060.1 46.154 156 72 7 5 157 10 156 2.67e-35 129
Msa1420050 AT1G32510.1 42.138 159 81 4 5 156 7 161 2.81e-35 127
Msa1420050 AT2G24430.2 41.401 157 84 4 2 157 14 163 5.79e-35 127
Msa1420050 AT2G24430.1 41.401 157 84 4 2 157 14 163 5.79e-35 127
Msa1420050 AT5G17260.1 44.231 156 77 5 5 157 7 155 1.00e-34 130
Msa1420050 AT5G61430.1 42.581 155 84 4 3 157 15 164 1.42e-34 127
Msa1420050 AT1G65910.1 44.156 154 79 4 5 157 7 154 1.86e-34 130
Msa1420050 AT5G46590.2 42.568 148 80 3 5 151 7 150 2.36e-34 125
Msa1420050 AT1G61110.1 42.593 162 81 4 5 157 17 175 2.36e-34 126
Msa1420050 AT3G18400.1 43.396 159 76 6 2 157 3 150 2.53e-34 125
Msa1420050 AT3G61910.1 37.264 212 108 8 5 195 12 219 3.51e-34 125
Msa1420050 AT1G79580.3 46.970 132 62 4 5 132 18 145 6.05e-34 126
Msa1420050 AT1G79580.5 46.970 132 62 4 5 132 18 145 6.05e-34 126
Msa1420050 AT1G79580.4 46.970 132 62 4 5 132 18 145 6.05e-34 126
Msa1420050 AT1G79580.2 46.970 132 62 4 5 132 18 145 6.05e-34 126
Msa1420050 AT1G79580.1 46.970 132 62 4 5 132 18 145 6.05e-34 126
Msa1420050 AT1G71930.2 49.618 131 59 5 5 132 10 136 6.14e-34 125
Msa1420050 AT1G71930.1 49.618 131 59 5 5 132 10 136 6.14e-34 125
Msa1420050 AT4G35580.1 44.304 158 81 6 1 157 6 157 1.30e-33 127
Msa1420050 AT4G35580.3 44.304 158 81 6 1 157 6 157 1.49e-33 127
Msa1420050 AT4G35580.2 44.304 158 81 6 1 157 6 157 1.58e-33 127
Msa1420050 AT5G07680.2 41.290 155 86 4 3 157 2 151 1.73e-33 123
Msa1420050 AT1G56010.2 41.830 153 86 3 5 157 20 169 1.74e-33 124
Msa1420050 AT5G07680.1 41.290 155 86 4 3 157 16 165 1.82e-33 124
Msa1420050 AT5G08790.1 37.143 210 107 7 5 194 8 212 2.09e-33 122
Msa1420050 AT1G33060.1 43.038 158 83 5 1 157 21 172 2.69e-33 127
Msa1420050 AT1G33060.2 43.038 158 83 5 1 157 21 172 2.70e-33 127
Msa1420050 AT1G76420.1 42.138 159 82 5 5 161 23 173 2.89e-33 123
Msa1420050 AT2G43000.1 41.447 152 83 4 6 157 20 165 6.84e-33 121
Msa1420050 AT5G24590.2 46.212 132 68 2 5 135 14 143 8.72e-33 124
Msa1420050 AT3G49530.2 39.873 158 89 4 1 157 10 162 1.21e-32 123
Msa1420050 AT1G33280.1 46.715 137 66 5 5 138 9 141 1.60e-32 120
Msa1420050 AT1G01720.1 43.396 159 84 4 5 162 8 161 1.69e-32 120
Msa1420050 AT3G04070.2 41.279 172 89 5 5 167 11 179 1.82e-32 121
Msa1420050 AT3G49530.1 39.873 158 89 4 1 157 10 162 2.23e-32 123
Msa1420050 AT2G46770.1 41.566 166 80 8 5 157 17 178 2.62e-32 121
Msa1420050 AT4G27410.3 40.828 169 78 7 5 157 15 177 2.81e-32 120
Msa1420050 AT1G54330.1 43.506 154 77 5 5 157 7 151 2.81e-32 120
Msa1420050 AT5G63790.1 41.243 177 95 6 5 178 51 221 3.40e-32 120
Msa1420050 AT5G63790.2 41.243 177 95 6 5 178 61 231 4.17e-32 120
Msa1420050 AT1G26870.1 45.926 135 66 5 1 132 12 142 4.20e-32 122
Msa1420050 AT5G18270.1 38.854 157 92 3 1 157 18 170 5.85e-32 120
Msa1420050 AT1G32770.1 48.092 131 61 6 5 132 17 143 5.92e-32 120
Msa1420050 AT1G77450.1 37.931 203 109 7 5 204 11 199 6.42e-32 118
Msa1420050 AT3G15170.1 39.752 161 92 4 5 164 21 177 6.52e-32 119
Msa1420050 AT5G18270.2 38.854 157 92 3 1 157 18 170 1.09e-31 119
Msa1420050 AT3G04060.1 39.355 155 90 3 3 157 19 169 1.11e-31 119
Msa1420050 AT3G03200.1 41.935 155 82 5 5 157 7 155 1.34e-31 121
Msa1420050 AT1G12260.2 46.565 131 63 5 5 132 8 134 2.05e-31 119
Msa1420050 AT3G04070.1 43.357 143 74 3 5 143 11 150 2.55e-31 119
Msa1420050 AT1G12260.1 46.565 131 63 5 5 132 8 134 2.55e-31 119
Msa1420050 AT5G39610.1 40.645 155 87 4 3 157 19 168 4.16e-31 116
Msa1420050 AT3G12977.1 38.562 153 88 4 5 157 19 165 4.29e-31 116
Msa1420050 AT5G39820.1 41.549 142 77 4 6 145 22 159 4.83e-31 117
Msa1420050 AT5G62380.2 38.608 158 81 6 5 157 8 154 7.28e-31 117
Msa1420050 AT5G62380.1 38.608 158 81 6 5 157 8 154 7.28e-31 117
Msa1420050 AT3G29035.1 40.000 155 88 4 3 157 23 172 1.21e-30 116
Msa1420050 AT1G62700.1 45.802 131 64 5 5 132 8 134 2.93e-30 116
Msa1420050 AT1G62700.2 45.802 131 64 5 5 132 8 134 2.93e-30 116
Msa1420050 AT3G44290.2 43.411 129 70 2 6 134 16 141 4.45e-30 112
Msa1420050 AT3G15510.1 41.615 161 78 6 8 157 21 176 5.73e-30 115
Msa1420050 AT3G10490.1 38.710 155 85 5 6 157 29 176 5.95e-30 112
Msa1420050 AT5G53950.1 46.154 130 64 4 5 132 18 143 9.60e-30 115
Msa1420050 AT2G27300.1 42.857 126 69 2 6 131 16 138 9.62e-30 114
Msa1420050 AT2G33480.2 40.645 155 78 5 5 158 16 157 1.50e-29 112
Msa1420050 AT3G44290.1 42.636 129 71 2 6 134 16 141 1.65e-29 113
Msa1420050 AT5G22290.1 42.063 126 70 2 6 131 23 145 2.50e-29 113
Msa1420050 AT5G64060.1 38.854 157 89 5 6 161 8 158 2.55e-29 113
Msa1420050 AT3G10500.1 37.975 158 91 5 6 162 11 162 3.36e-29 115
Msa1420050 AT1G34190.1 40.000 160 89 5 4 162 16 169 4.55e-29 115
Msa1420050 AT3G10480.1 38.710 155 85 5 6 157 29 176 4.93e-29 114
Msa1420050 AT2G33480.1 40.252 159 75 6 5 158 16 159 1.56e-28 109
Msa1420050 AT3G10490.2 38.710 155 85 5 6 157 29 176 3.68e-28 111
Msa1420050 AT3G10480.2 38.065 155 85 5 6 157 29 175 3.69e-28 111
Msa1420050 AT5G13180.1 45.385 130 62 4 5 132 15 137 4.58e-28 107
Msa1420050 AT1G34180.3 43.609 133 71 4 4 135 16 145 1.10e-27 110
Msa1420050 AT4G28530.1 37.500 168 82 5 5 157 11 170 1.85e-27 108
Msa1420050 AT5G04410.1 36.709 158 93 5 6 162 11 162 2.30e-27 110
Msa1420050 AT1G34180.1 43.609 133 71 4 4 135 16 145 2.53e-27 110
Msa1420050 AT5G09330.5 43.750 128 68 3 6 132 8 132 9.27e-27 108
Msa1420050 AT5G09330.2 43.750 128 68 3 6 132 8 132 9.27e-27 108
Msa1420050 AT5G09330.4 43.750 128 68 3 6 132 8 132 9.27e-27 108
Msa1420050 AT5G09330.3 43.750 128 68 3 6 132 8 132 9.27e-27 108
Msa1420050 AT5G09330.1 43.750 128 68 3 6 132 8 132 9.27e-27 108
Msa1420050 AT1G34180.4 40.690 145 70 5 4 135 16 157 4.26e-26 106
Msa1420050 AT1G34180.2 40.690 145 70 5 4 135 16 157 7.53e-26 106
Msa1420050 AT3G04420.2 33.548 155 93 3 3 156 2 147 3.35e-25 101
Msa1420050 AT3G04420.1 33.548 155 93 3 3 156 2 147 1.03e-24 100
Msa1420050 AT3G10480.3 31.915 188 85 5 6 157 29 209 1.06e-24 102
Msa1420050 AT1G52880.1 39.157 166 90 4 8 165 21 183 1.08e-23 97.8
Msa1420050 AT4G01550.1 41.406 128 71 3 7 131 7 133 1.67e-22 95.9
Msa1420050 AT5G04395.1 34.266 143 74 4 5 131 29 167 3.42e-22 90.9
Msa1420050 AT1G32870.2 36.076 158 94 5 6 162 12 163 1.27e-20 90.9
Msa1420050 AT1G32870.1 36.076 158 94 5 6 162 12 163 1.27e-20 90.9
Msa1420050 AT1G32870.3 36.076 158 94 5 6 162 48 199 2.06e-20 90.5
Msa1420050 AT4G10350.2 40.845 142 70 7 54 189 9 142 2.39e-20 88.2
Msa1420050 AT4G01520.1 36.567 134 82 2 1 131 1 134 2.46e-20 88.2
Msa1420050 AT5G64530.2 40.310 129 59 7 5 131 4 116 3.07e-20 84.7
Msa1420050 AT5G64530.1 38.760 129 61 6 5 131 4 116 4.05e-20 85.1
Msa1420050 AT1G56010.1 42.268 97 55 1 61 157 7 102 4.41e-20 86.7
Msa1420050 AT3G12977.2 40.385 104 59 2 54 157 12 112 6.85e-20 85.5
Msa1420050 AT4G01540.2 39.535 129 73 4 7 131 7 134 1.24e-19 87.8
Msa1420050 AT4G01540.3 35.714 154 86 5 7 156 7 151 1.33e-19 87.4
Msa1420050 AT4G01540.1 39.535 129 73 4 7 131 7 134 1.52e-19 87.8
Msa1420050 AT4G01540.4 35.714 154 86 5 7 156 7 151 1.57e-19 87.0
Msa1420050 AT1G02230.1 36.364 132 78 3 5 133 4 132 2.14e-19 86.3
Msa1420050 AT5G61430.2 41.237 97 55 2 61 157 7 101 2.16e-19 85.1
Msa1420050 AT1G01010.1 35.252 139 79 4 1 131 1 136 1.74e-18 84.3
Msa1420050 AT1G02250.1 31.613 155 93 4 5 156 4 148 3.20e-18 83.2
Msa1420050 AT3G56530.1 31.169 154 100 4 5 158 53 200 1.13e-17 81.3
Msa1420050 AT1G02220.1 29.375 160 100 4 3 161 2 149 7.35e-17 79.7
Msa1420050 AT2G33480.3 39.216 102 57 3 58 158 5 102 6.39e-16 74.7
Msa1420050 AT4G28530.2 36.449 107 53 2 5 97 11 116 2.81e-14 71.6
Msa1420050 AT5G50820.1 29.747 158 97 4 5 159 18 164 2.89e-14 69.7
Msa1420050 AT3G55210.1 27.273 165 101 4 5 158 12 168 3.54e-14 70.9
Msa1420050 AT2G43000.2 42.500 80 43 2 78 157 11 87 3.99e-14 69.3
Msa1420050 AT5G14000.1 30.526 190 115 7 5 190 16 192 2.68e-13 67.4
Msa1420050 AT2G18060.2 43.836 73 35 2 85 157 2 68 2.23e-12 65.9
Msa1420050 AT3G10490.4 41.026 78 43 2 80 157 2 76 4.22e-12 65.5
Msa1420050 AT3G10490.3 41.026 78 43 2 80 157 2 76 4.22e-12 65.5
Msa1420050 AT5G14000.2 33.077 130 77 5 5 131 16 138 2.82e-11 60.5

Find 72 sgRNAs with CRISPR-Local

Find 276 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTTCTAACAACAAAGTTAT+TGG 0.141170 tig0024736:-51556 Msa1420050:CDS
GGGAATGGGAACAACTAAAT+TGG 0.237761 tig0024736:-50683 Msa1420050:CDS
GGTTCATCAACCCCATTATT+TGG 0.243110 tig0024736:+50720 None:intergenic
TGGAATGATGTACCAAATAA+TGG 0.268563 tig0024736:-50732 Msa1420050:CDS
ACAACAAAGTTATTGGAATA+AGG 0.320903 tig0024736:-51549 Msa1420050:CDS
ATGAACCTGACGAGCCTCTT+TGG 0.329425 tig0024736:-50704 Msa1420050:CDS
TCAAGTTGTAACTCCGTCTT+TGG 0.337961 tig0024736:+50891 None:intergenic
CCTGATGCTGCTCTTAATAT+TGG 0.341714 tig0024736:-50774 Msa1420050:CDS
GGAATGATGTACCAAATAAT+GGG 0.347934 tig0024736:-50731 Msa1420050:CDS
TGAACCTGACGAGCCTCTTT+GGG 0.365510 tig0024736:-50703 Msa1420050:CDS
CCACAAGATGTTGTTCTGTT+TGG 0.369650 tig0024736:+51616 None:intergenic
CATCTGGAAGGAAAACAAAA+TGG 0.371311 tig0024736:-51495 Msa1420050:CDS
GAACAACATCTTGTGGGTAT+TGG 0.373317 tig0024736:-51609 Msa1420050:CDS
TCCGTCTTTGGCCCCTCTAA+TGG 0.374360 tig0024736:+50903 None:intergenic
GTGTCGCGTTTATGTGATAT+CGG 0.388670 tig0024736:-50952 Msa1420050:CDS
CATTCCCAAAGAGGCTCGTC+AGG 0.403826 tig0024736:+50699 None:intergenic
CCAATATTAAGAGCAGCATC+AGG 0.411283 tig0024736:+50774 None:intergenic
CTCAACTCTCTCTCTTGTCT+TGG 0.417219 tig0024736:+51649 None:intergenic
GAGGGTCAAGTGGCACGAAT+TGG 0.422284 tig0024736:-50752 Msa1420050:CDS
TACCTTAGGAGGGTTTGTAT+TGG 0.427109 tig0024736:+51432 None:intergenic
ATTTGATCGAAGACCATTAG+AGG 0.450948 tig0024736:-50916 Msa1420050:CDS
TACATAGGAAAAGCTCCATC+TGG 0.458200 tig0024736:-51511 Msa1420050:CDS
TGACGAGCCTCTTTGGGAAT+GGG 0.462600 tig0024736:-50697 Msa1420050:CDS
TTAGGAGGGTTTGTATTGGA+TGG 0.467242 tig0024736:+51436 None:intergenic
CTGACGAGCCTCTTTGGGAA+TGG 0.476253 tig0024736:-50698 Msa1420050:CDS
GGATGGATCAGATGGTTCAA+TGG 0.492070 tig0024736:+51453 None:intergenic
TTGTGGGTATTGGAAAGCTA+CGG 0.496227 tig0024736:-51599 Msa1420050:CDS
ATACCTGTCATTGATATCAA+TGG 0.504577 tig0024736:-52526 Msa1420050:CDS
AATTGTGTTACGTACTTGGA+AGG 0.510602 tig0024736:+52488 None:intergenic
TACGTACTTGGAAGGTTCCA+TGG 0.519792 tig0024736:+52496 None:intergenic
TGTCGCGTTTATGTGATATC+GGG 0.520469 tig0024736:-50951 Msa1420050:CDS
GATGCTGCTCTTAATATTGG+AGG 0.523753 tig0024736:-50771 Msa1420050:CDS
AGTTGTTCCCATTCCCAAAG+AGG 0.523806 tig0024736:+50690 None:intergenic
TTAGAAGAGTAAACGTAGCT+AGG 0.528675 tig0024736:+51571 None:intergenic
CCTACAGAAGAAGAGCTAGT+TGG 0.532376 tig0024736:-52604 Msa1420050:CDS
TGTGGGTATTGGAAAGCTAC+GGG 0.533051 tig0024736:-51598 Msa1420050:CDS
TTTGTATTGGATGGATCAGA+TGG 0.533121 tig0024736:+51445 None:intergenic
ACTTCCCACTCGGGAGAGGT+AGG 0.537886 tig0024736:-50804 Msa1420050:CDS
CAAGAGAGAGAGTTGAGAGG+TGG 0.538126 tig0024736:-51643 Msa1420050:CDS
AATATGGAGGATTCCCCACC+TGG 0.538171 tig0024736:-52640 Msa1420050:CDS
ATCAACTTCCCACTCGGGAG+AGG 0.543167 tig0024736:-50808 Msa1420050:CDS
CTTAATATTGGAGGGTCAAG+TGG 0.545128 tig0024736:-50762 Msa1420050:CDS
ATCCAATACAAACCCTCCTA+AGG 0.551696 tig0024736:-51434 Msa1420050:intron
CCAACTAGCTCTTCTTCTGT+AGG 0.552564 tig0024736:+52604 None:intergenic
ACCATTAGAGGGGCCAAAGA+CGG 0.556738 tig0024736:-50904 Msa1420050:CDS
TTGCCATTGATATCAATGAC+AGG 0.570032 tig0024736:+52523 None:intergenic
AAACTTATCAACTTCCCACT+CGG 0.573290 tig0024736:-50814 Msa1420050:CDS
ATATCAATGGCAAAGAGCCA+TGG 0.579611 tig0024736:-52513 Msa1420050:CDS
CAAACAGAACAACATCTTGT+GGG 0.582806 tig0024736:-51615 Msa1420050:CDS
CTTCTATCTACACAACCAGC+TGG 0.586767 tig0024736:-52581 Msa1420050:CDS
AACTTATCAACTTCCCACTC+GGG 0.587994 tig0024736:-50813 Msa1420050:CDS
CTTCCCACTCGGGAGAGGTA+GGG 0.590713 tig0024736:-50803 Msa1420050:CDS
TTTGATCGAAGACCATTAGA+GGG 0.593675 tig0024736:-50915 Msa1420050:CDS
TCTCCCTACCTCTCCCGAGT+GGG 0.595426 tig0024736:+50800 None:intergenic
ATGCTGCTCTTAATATTGGA+GGG 0.598605 tig0024736:-50770 Msa1420050:CDS
CTCTCCCTACCTCTCCCGAG+TGG 0.598952 tig0024736:+50799 None:intergenic
CCAAACAGAACAACATCTTG+TGG 0.599917 tig0024736:-51616 Msa1420050:CDS
TAGGAAAAGCTCCATCTGGA+AGG 0.600654 tig0024736:-51507 Msa1420050:CDS
AACAAGTGCTCATCAACAAG+TGG 0.605093 tig0024736:-50856 Msa1420050:CDS
GTCGTGGAGACACAGAGCAA+TGG 0.605650 tig0024736:-51684 Msa1420050:CDS
CAATATTAAGAGCAGCATCA+GGG 0.618904 tig0024736:+50775 None:intergenic
TATCTACACAACCAGCTGGA+AGG 0.633344 tig0024736:-52577 Msa1420050:CDS
TTTGCAGGGGAGAGATGTCG+TGG 0.639193 tig0024736:-51700 Msa1420050:intron
ATAGAAACGAAAACCAGGTG+GGG 0.644775 tig0024736:+52627 None:intergenic
GATAGAAACGAAAACCAGGT+GGG 0.647890 tig0024736:+52626 None:intergenic
GTAGGATAGAAACGAAAACC+AGG 0.654759 tig0024736:+52622 None:intergenic
AGACAAGAGAGAGAGTTGAG+AGG 0.669671 tig0024736:-51646 Msa1420050:CDS
TATTGGAATAAGGAAAACCA+TGG 0.672753 tig0024736:-51539 Msa1420050:CDS
TTGATCGAAGACCATTAGAG+GGG 0.685119 tig0024736:-50914 Msa1420050:CDS
GGATAGAAACGAAAACCAGG+TGG 0.690089 tig0024736:+52625 None:intergenic
CAAGTGGTAGCAGAGCTCGA+TGG 0.690454 tig0024736:-50840 Msa1420050:CDS
GAATGATGTACCAAATAATG+GGG 0.703827 tig0024736:-50730 Msa1420050:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATTGATCAATAATTTATTT+TGG - tig0024736:52309-52328 Msa1420050:intron 10.0%
!!! AATTGATCAATAATTTATTT+TGG - tig0024736:52309-52328 Msa1420050:intron 10.0%
!!! ATCTTTTTCTTTTTTTTTTG+AGG - tig0024736:51043-51062 Msa1420050:intron 15.0%
!!! TCTTTTTCTTTTTTTTTTGA+GGG - tig0024736:51044-51063 Msa1420050:intron 15.0%
!!! AAATTTCGTACTTATTTTTT+GGG + tig0024736:51339-51358 None:intergenic 15.0%
!! AAAAAATAAGTACGAAATTT+GGG - tig0024736:51339-51358 Msa1420050:intron 15.0%
!!! AAAACTAAGCAATTTTTTTA+GGG + tig0024736:51394-51413 None:intergenic 15.0%
!!! AAAAACTAAGCAATTTTTTT+AGG + tig0024736:51395-51414 None:intergenic 15.0%
!!! TTATGATAAATATTTTAAGG+TGG + tig0024736:52060-52079 None:intergenic 15.0%
!!! ATCTTTTTCTTTTTTTTTTG+AGG - tig0024736:51043-51062 Msa1420050:intron 15.0%
!!! TCTTTTTCTTTTTTTTTTGA+GGG - tig0024736:51044-51063 Msa1420050:intron 15.0%
!!! AAATTTCGTACTTATTTTTT+GGG + tig0024736:51339-51358 None:intergenic 15.0%
!! AAAAAATAAGTACGAAATTT+GGG - tig0024736:51339-51358 Msa1420050:intron 15.0%
!!! AAAACTAAGCAATTTTTTTA+GGG + tig0024736:51394-51413 None:intergenic 15.0%
!!! AAAAACTAAGCAATTTTTTT+AGG + tig0024736:51395-51414 None:intergenic 15.0%
!!! TTATGATAAATATTTTAAGG+TGG + tig0024736:52060-52079 None:intergenic 15.0%
!!! TGAGATAATTTTTTTCTTCA+TGG + tig0024736:50973-50992 None:intergenic 20.0%
!! AAAATCACTAGATTAAGTAA+CGG + tig0024736:51003-51022 None:intergenic 20.0%
!!! AATTTCGTACTTATTTTTTG+GGG + tig0024736:51338-51357 None:intergenic 20.0%
!!! CAAATTTCGTACTTATTTTT+TGG + tig0024736:51340-51359 None:intergenic 20.0%
!! CAAAAAATAAGTACGAAATT+TGG - tig0024736:51338-51357 Msa1420050:intron 20.0%
!! TAAACCCCTAAAAAAAAATT+GGG + tig0024736:51366-51385 None:intergenic 20.0%
!! ATAAACCCCTAAAAAAAAAT+TGG + tig0024736:51367-51386 None:intergenic 20.0%
!!! TTTTTTTTTAGGGGTTTATT+AGG - tig0024736:51368-51387 Msa1420050:intron 20.0%
!!! TACTTTTTCAAATATACCTT+AGG + tig0024736:51899-51918 None:intergenic 20.0%
!!! ATATACAATAAATTTTGACG+CGG - tig0024736:52211-52230 Msa1420050:intron 20.0%
!!! TGAGATAATTTTTTTCTTCA+TGG + tig0024736:50973-50992 None:intergenic 20.0%
!! AAAATCACTAGATTAAGTAA+CGG + tig0024736:51003-51022 None:intergenic 20.0%
!!! AATTTCGTACTTATTTTTTG+GGG + tig0024736:51338-51357 None:intergenic 20.0%
!!! CAAATTTCGTACTTATTTTT+TGG + tig0024736:51340-51359 None:intergenic 20.0%
!! CAAAAAATAAGTACGAAATT+TGG - tig0024736:51338-51357 Msa1420050:intron 20.0%
!! TAAACCCCTAAAAAAAAATT+GGG + tig0024736:51366-51385 None:intergenic 20.0%
!! ATAAACCCCTAAAAAAAAAT+TGG + tig0024736:51367-51386 None:intergenic 20.0%
!!! TTTTTTTTTAGGGGTTTATT+AGG - tig0024736:51368-51387 Msa1420050:intron 20.0%
!!! TACTTTTTCAAATATACCTT+AGG + tig0024736:51899-51918 None:intergenic 20.0%
!!! ATATACAATAAATTTTGACG+CGG - tig0024736:52211-52230 Msa1420050:intron 20.0%
! AAAAAATTGTGTTACGTACT+TGG + tig0024736:50833-50852 None:intergenic 25.0%
! AAATCACTAGATTAAGTAAC+GGG + tig0024736:51002-51021 None:intergenic 25.0%
! GTCAATCTTAGACATATTTA+GGG + tig0024736:51228-51247 None:intergenic 25.0%
! TGTCAATCTTAGACATATTT+AGG + tig0024736:51229-51248 None:intergenic 25.0%
! GAAAATATCTACATGAATGA+CGG + tig0024736:51252-51271 None:intergenic 25.0%
! TATGATATTATACCACATGT+AGG - tig0024736:51272-51291 Msa1420050:intron 25.0%
! ATGATATTATACCACATGTA+GGG - tig0024736:51273-51292 Msa1420050:intron 25.0%
! AAACCCCTAAAAAAAAATTG+GGG + tig0024736:51365-51384 None:intergenic 25.0%
! TCTTCTAACAACAAAGTTAT+TGG - tig0024736:51758-51777 Msa1420050:intron 25.0%
! ACAACAAAGTTATTGGAATA+AGG - tig0024736:51765-51784 Msa1420050:intron 25.0%
!! TTTTCAAATATACCTTAGGA+GGG + tig0024736:51895-51914 None:intergenic 25.0%
!!! TTTTTCAAATATACCTTAGG+AGG + tig0024736:51896-51915 None:intergenic 25.0%
! GACATATTATTTGAGAATCA+CGG + tig0024736:52019-52038 None:intergenic 25.0%
! AAAAAATTGTGTTACGTACT+TGG + tig0024736:50833-50852 None:intergenic 25.0%
! AAATCACTAGATTAAGTAAC+GGG + tig0024736:51002-51021 None:intergenic 25.0%
! GTCAATCTTAGACATATTTA+GGG + tig0024736:51228-51247 None:intergenic 25.0%
! TGTCAATCTTAGACATATTT+AGG + tig0024736:51229-51248 None:intergenic 25.0%
! GAAAATATCTACATGAATGA+CGG + tig0024736:51252-51271 None:intergenic 25.0%
! TATGATATTATACCACATGT+AGG - tig0024736:51272-51291 Msa1420050:intron 25.0%
! ATGATATTATACCACATGTA+GGG - tig0024736:51273-51292 Msa1420050:intron 25.0%
! AAACCCCTAAAAAAAAATTG+GGG + tig0024736:51365-51384 None:intergenic 25.0%
! TCTTCTAACAACAAAGTTAT+TGG - tig0024736:51758-51777 Msa1420050:intron 25.0%
! ACAACAAAGTTATTGGAATA+AGG - tig0024736:51765-51784 Msa1420050:intron 25.0%
!! TTTTCAAATATACCTTAGGA+GGG + tig0024736:51895-51914 None:intergenic 25.0%
!!! TTTTTCAAATATACCTTAGG+AGG + tig0024736:51896-51915 None:intergenic 25.0%
! GACATATTATTTGAGAATCA+CGG + tig0024736:52019-52038 None:intergenic 25.0%
ATACCTGTCATTGATATCAA+TGG - tig0024736:50788-50807 Msa1420050:CDS 30.0%
TCTATCTATAAGTAGTGTCA+TGG - tig0024736:51078-51097 Msa1420050:intron 30.0%
!!! TTATTTTTTGGGGTATAGGA+CGG + tig0024736:51328-51347 None:intergenic 30.0%
!!! GTACTTATTTTTTGGGGTAT+AGG + tig0024736:51332-51351 None:intergenic 30.0%
TTAGTTAGAACCCAAATTGT+AGG - tig0024736:51479-51498 Msa1420050:CDS 30.0%
TATTGGAATAAGGAAAACCA+TGG - tig0024736:51775-51794 Msa1420050:intron 30.0%
! AAAACCATGGTGTTTTACAT+AGG - tig0024736:51788-51807 Msa1420050:intron 30.0%
! TTTTCCTATGTAAAACACCA+TGG + tig0024736:51795-51814 None:intergenic 30.0%
!! CTTATTTTTCCCTTCCTTTT+TGG - tig0024736:51960-51979 Msa1420050:intron 30.0%
TGGAATGATGTACCAAATAA+TGG - tig0024736:52582-52601 Msa1420050:CDS 30.0%
GGAATGATGTACCAAATAAT+GGG - tig0024736:52583-52602 Msa1420050:CDS 30.0%
GAATGATGTACCAAATAATG+GGG - tig0024736:52584-52603 Msa1420050:CDS 30.0%
ATACCTGTCATTGATATCAA+TGG - tig0024736:50788-50807 Msa1420050:CDS 30.0%
TCTATCTATAAGTAGTGTCA+TGG - tig0024736:51078-51097 Msa1420050:intron 30.0%
!!! TTATTTTTTGGGGTATAGGA+CGG + tig0024736:51328-51347 None:intergenic 30.0%
!!! GTACTTATTTTTTGGGGTAT+AGG + tig0024736:51332-51351 None:intergenic 30.0%
TTAGTTAGAACCCAAATTGT+AGG - tig0024736:51479-51498 Msa1420050:CDS 30.0%
TATTGGAATAAGGAAAACCA+TGG - tig0024736:51775-51794 Msa1420050:intron 30.0%
! AAAACCATGGTGTTTTACAT+AGG - tig0024736:51788-51807 Msa1420050:intron 30.0%
! TTTTCCTATGTAAAACACCA+TGG + tig0024736:51795-51814 None:intergenic 30.0%
!! CTTATTTTTCCCTTCCTTTT+TGG - tig0024736:51960-51979 Msa1420050:intron 30.0%
TGGAATGATGTACCAAATAA+TGG - tig0024736:52582-52601 Msa1420050:CDS 30.0%
GGAATGATGTACCAAATAAT+GGG - tig0024736:52583-52602 Msa1420050:CDS 30.0%
GAATGATGTACCAAATAATG+GGG - tig0024736:52584-52603 Msa1420050:CDS 30.0%
TTGCCATTGATATCAATGAC+AGG + tig0024736:50794-50813 None:intergenic 35.0%
AATTGTGTTACGTACTTGGA+AGG + tig0024736:50829-50848 None:intergenic 35.0%
!!! TTGGGCCCCAATTTTTTTTT+AGG - tig0024736:51357-51376 Msa1420050:intron 35.0%
!!! TGGGCCCCAATTTTTTTTTA+GGG - tig0024736:51358-51377 Msa1420050:intron 35.0%
ATTACTCTCACATGTGTTCA+GGG + tig0024736:51538-51557 None:intergenic 35.0%
TATTACTCTCACATGTGTTC+AGG + tig0024736:51539-51558 None:intergenic 35.0%
CAAACAGAACAACATCTTGT+GGG - tig0024736:51699-51718 Msa1420050:intron 35.0%
TTAGAAGAGTAAACGTAGCT+AGG + tig0024736:51746-51765 None:intergenic 35.0%
!!! CATTTTGTTTTCCTTCCAGA+TGG + tig0024736:51821-51840 None:intergenic 35.0%
CATCTGGAAGGAAAACAAAA+TGG - tig0024736:51819-51838 Msa1420050:intron 35.0%
TTTGTATTGGATGGATCAGA+TGG + tig0024736:51872-51891 None:intergenic 35.0%
AAACACGATCCAAAAAGGAA+GGG + tig0024736:51972-51991 None:intergenic 35.0%
CACAATCTTGATTGTTGTCA+TGG + tig0024736:52105-52124 None:intergenic 35.0%
ATTTGATCGAAGACCATTAG+AGG - tig0024736:52398-52417 Msa1420050:intron 35.0%
TTTGATCGAAGACCATTAGA+GGG - tig0024736:52399-52418 Msa1420050:intron 35.0%
AAACTTATCAACTTCCCACT+CGG - tig0024736:52500-52519 Msa1420050:intron 35.0%
CAATATTAAGAGCAGCATCA+GGG + tig0024736:52542-52561 None:intergenic 35.0%
ATGCTGCTCTTAATATTGGA+GGG - tig0024736:52544-52563 Msa1420050:CDS 35.0%
TTGCCATTGATATCAATGAC+AGG + tig0024736:50794-50813 None:intergenic 35.0%
AATTGTGTTACGTACTTGGA+AGG + tig0024736:50829-50848 None:intergenic 35.0%
!!! TTGGGCCCCAATTTTTTTTT+AGG - tig0024736:51357-51376 Msa1420050:intron 35.0%
!!! TGGGCCCCAATTTTTTTTTA+GGG - tig0024736:51358-51377 Msa1420050:intron 35.0%
ATTACTCTCACATGTGTTCA+GGG + tig0024736:51538-51557 None:intergenic 35.0%
TATTACTCTCACATGTGTTC+AGG + tig0024736:51539-51558 None:intergenic 35.0%
CAAACAGAACAACATCTTGT+GGG - tig0024736:51699-51718 Msa1420050:intron 35.0%
TTAGAAGAGTAAACGTAGCT+AGG + tig0024736:51746-51765 None:intergenic 35.0%
!!! CATTTTGTTTTCCTTCCAGA+TGG + tig0024736:51821-51840 None:intergenic 35.0%
CATCTGGAAGGAAAACAAAA+TGG - tig0024736:51819-51838 Msa1420050:intron 35.0%
TTTGTATTGGATGGATCAGA+TGG + tig0024736:51872-51891 None:intergenic 35.0%
AAACACGATCCAAAAAGGAA+GGG + tig0024736:51972-51991 None:intergenic 35.0%
CACAATCTTGATTGTTGTCA+TGG + tig0024736:52105-52124 None:intergenic 35.0%
ATTTGATCGAAGACCATTAG+AGG - tig0024736:52398-52417 Msa1420050:intron 35.0%
TTTGATCGAAGACCATTAGA+GGG - tig0024736:52399-52418 Msa1420050:intron 35.0%
AAACTTATCAACTTCCCACT+CGG - tig0024736:52500-52519 Msa1420050:intron 35.0%
CAATATTAAGAGCAGCATCA+GGG + tig0024736:52542-52561 None:intergenic 35.0%
ATGCTGCTCTTAATATTGGA+GGG - tig0024736:52544-52563 Msa1420050:CDS 35.0%
ATAGAAACGAAAACCAGGTG+GGG + tig0024736:50690-50709 None:intergenic 40.0%
GATAGAAACGAAAACCAGGT+GGG + tig0024736:50691-50710 None:intergenic 40.0%
GTAGGATAGAAACGAAAACC+AGG + tig0024736:50695-50714 None:intergenic 40.0%
ATATCAATGGCAAAGAGCCA+TGG - tig0024736:50801-50820 Msa1420050:CDS 40.0%
CTCATATACAACCCTACATG+TGG + tig0024736:51287-51306 None:intergenic 40.0%
CACATGTAGGGTTGTATATG+AGG - tig0024736:51285-51304 Msa1420050:intron 40.0%
!!! GGGCCCCAATTTTTTTTTAG+GGG - tig0024736:51359-51378 Msa1420050:intron 40.0%
CTAGGACGAACCTACAATTT+GGG + tig0024736:51492-51511 None:intergenic 40.0%
TTACTCTCACATGTGTTCAG+GGG + tig0024736:51537-51556 None:intergenic 40.0%
TGCTTGTAATCAGCATTTGC+AGG - tig0024736:51599-51618 Msa1420050:CDS 40.0%
GCTTGTAATCAGCATTTGCA+GGG - tig0024736:51600-51619 Msa1420050:CDS 40.0%
CTTGTAATCAGCATTTGCAG+GGG - tig0024736:51601-51620 Msa1420050:CDS 40.0%
CCACAAGATGTTGTTCTGTT+TGG + tig0024736:51701-51720 None:intergenic 40.0%
CCAAACAGAACAACATCTTG+TGG - tig0024736:51698-51717 Msa1420050:intron 40.0%
GAACAACATCTTGTGGGTAT+TGG - tig0024736:51705-51724 Msa1420050:intron 40.0%
!! TTGTGGGTATTGGAAAGCTA+CGG - tig0024736:51715-51734 Msa1420050:intron 40.0%
TACATAGGAAAAGCTCCATC+TGG - tig0024736:51803-51822 Msa1420050:intron 40.0%
TTAGGAGGGTTTGTATTGGA+TGG + tig0024736:51881-51900 None:intergenic 40.0%
ATCCAATACAAACCCTCCTA+AGG - tig0024736:51880-51899 Msa1420050:intron 40.0%
TACCTTAGGAGGGTTTGTAT+TGG + tig0024736:51885-51904 None:intergenic 40.0%
CAAACACGATCCAAAAAGGA+AGG + tig0024736:51973-51992 None:intergenic 40.0%
! TCCTTTTTGGATCGTGTTTG+AGG - tig0024736:51973-51992 Msa1420050:intron 40.0%
ACCTCAAACACGATCCAAAA+AGG + tig0024736:51977-51996 None:intergenic 40.0%
! ATCGTGTTTGAGGTTTGCAT+CGG - tig0024736:51983-52002 Msa1420050:intron 40.0%
GTGTCGCGTTTATGTGATAT+CGG - tig0024736:52362-52381 Msa1420050:intron 40.0%
TGTCGCGTTTATGTGATATC+GGG - tig0024736:52363-52382 Msa1420050:intron 40.0%
TTGATCGAAGACCATTAGAG+GGG - tig0024736:52400-52419 Msa1420050:intron 40.0%
! TCAAGTTGTAACTCCGTCTT+TGG + tig0024736:52426-52445 None:intergenic 40.0%
AACAAGTGCTCATCAACAAG+TGG - tig0024736:52458-52477 Msa1420050:intron 40.0%
AACTTATCAACTTCCCACTC+GGG - tig0024736:52501-52520 Msa1420050:intron 40.0%
CCAATATTAAGAGCAGCATC+AGG + tig0024736:52543-52562 None:intergenic 40.0%
CCTGATGCTGCTCTTAATAT+TGG - tig0024736:52540-52559 Msa1420050:CDS 40.0%
GATGCTGCTCTTAATATTGG+AGG - tig0024736:52543-52562 Msa1420050:CDS 40.0%
CTTAATATTGGAGGGTCAAG+TGG - tig0024736:52552-52571 Msa1420050:CDS 40.0%
GGTTCATCAACCCCATTATT+TGG + tig0024736:52597-52616 None:intergenic 40.0%
GGGAATGGGAACAACTAAAT+TGG - tig0024736:52631-52650 Msa1420050:CDS 40.0%
ATAGAAACGAAAACCAGGTG+GGG + tig0024736:50690-50709 None:intergenic 40.0%
GATAGAAACGAAAACCAGGT+GGG + tig0024736:50691-50710 None:intergenic 40.0%
GTAGGATAGAAACGAAAACC+AGG + tig0024736:50695-50714 None:intergenic 40.0%
ATATCAATGGCAAAGAGCCA+TGG - tig0024736:50801-50820 Msa1420050:CDS 40.0%
CTCATATACAACCCTACATG+TGG + tig0024736:51287-51306 None:intergenic 40.0%
CACATGTAGGGTTGTATATG+AGG - tig0024736:51285-51304 Msa1420050:intron 40.0%
!!! GGGCCCCAATTTTTTTTTAG+GGG - tig0024736:51359-51378 Msa1420050:intron 40.0%
CTAGGACGAACCTACAATTT+GGG + tig0024736:51492-51511 None:intergenic 40.0%
TTACTCTCACATGTGTTCAG+GGG + tig0024736:51537-51556 None:intergenic 40.0%
TGCTTGTAATCAGCATTTGC+AGG - tig0024736:51599-51618 Msa1420050:CDS 40.0%
GCTTGTAATCAGCATTTGCA+GGG - tig0024736:51600-51619 Msa1420050:CDS 40.0%
CTTGTAATCAGCATTTGCAG+GGG - tig0024736:51601-51620 Msa1420050:CDS 40.0%
CCACAAGATGTTGTTCTGTT+TGG + tig0024736:51701-51720 None:intergenic 40.0%
CCAAACAGAACAACATCTTG+TGG - tig0024736:51698-51717 Msa1420050:intron 40.0%
GAACAACATCTTGTGGGTAT+TGG - tig0024736:51705-51724 Msa1420050:intron 40.0%
!! TTGTGGGTATTGGAAAGCTA+CGG - tig0024736:51715-51734 Msa1420050:intron 40.0%
TACATAGGAAAAGCTCCATC+TGG - tig0024736:51803-51822 Msa1420050:intron 40.0%
TTAGGAGGGTTTGTATTGGA+TGG + tig0024736:51881-51900 None:intergenic 40.0%
ATCCAATACAAACCCTCCTA+AGG - tig0024736:51880-51899 Msa1420050:intron 40.0%
TACCTTAGGAGGGTTTGTAT+TGG + tig0024736:51885-51904 None:intergenic 40.0%
CAAACACGATCCAAAAAGGA+AGG + tig0024736:51973-51992 None:intergenic 40.0%
! TCCTTTTTGGATCGTGTTTG+AGG - tig0024736:51973-51992 Msa1420050:intron 40.0%
ACCTCAAACACGATCCAAAA+AGG + tig0024736:51977-51996 None:intergenic 40.0%
! ATCGTGTTTGAGGTTTGCAT+CGG - tig0024736:51983-52002 Msa1420050:intron 40.0%
GTGTCGCGTTTATGTGATAT+CGG - tig0024736:52362-52381 Msa1420050:intron 40.0%
TGTCGCGTTTATGTGATATC+GGG - tig0024736:52363-52382 Msa1420050:intron 40.0%
TTGATCGAAGACCATTAGAG+GGG - tig0024736:52400-52419 Msa1420050:intron 40.0%
! TCAAGTTGTAACTCCGTCTT+TGG + tig0024736:52426-52445 None:intergenic 40.0%
AACAAGTGCTCATCAACAAG+TGG - tig0024736:52458-52477 Msa1420050:intron 40.0%
AACTTATCAACTTCCCACTC+GGG - tig0024736:52501-52520 Msa1420050:intron 40.0%
CCAATATTAAGAGCAGCATC+AGG + tig0024736:52543-52562 None:intergenic 40.0%
CCTGATGCTGCTCTTAATAT+TGG - tig0024736:52540-52559 Msa1420050:CDS 40.0%
GATGCTGCTCTTAATATTGG+AGG - tig0024736:52543-52562 Msa1420050:CDS 40.0%
CTTAATATTGGAGGGTCAAG+TGG - tig0024736:52552-52571 Msa1420050:CDS 40.0%
GGTTCATCAACCCCATTATT+TGG + tig0024736:52597-52616 None:intergenic 40.0%
GGGAATGGGAACAACTAAAT+TGG - tig0024736:52631-52650 Msa1420050:CDS 40.0%
GGATAGAAACGAAAACCAGG+TGG + tig0024736:50692-50711 None:intergenic 45.0%
! CCAACTAGCTCTTCTTCTGT+AGG + tig0024736:50713-50732 None:intergenic 45.0%
CCTACAGAAGAAGAGCTAGT+TGG - tig0024736:50710-50729 Msa1420050:CDS 45.0%
CTTCTATCTACACAACCAGC+TGG - tig0024736:50733-50752 Msa1420050:CDS 45.0%
TATCTACACAACCAGCTGGA+AGG - tig0024736:50737-50756 Msa1420050:CDS 45.0%
TACGTACTTGGAAGGTTCCA+TGG + tig0024736:50821-50840 None:intergenic 45.0%
TGTAGGGTTGTATATGAGGC+AGG - tig0024736:51289-51308 Msa1420050:intron 45.0%
GTAGGGTTGTATATGAGGCA+GGG - tig0024736:51290-51309 Msa1420050:intron 45.0%
CCTAGGACGAACCTACAATT+TGG + tig0024736:51493-51512 None:intergenic 45.0%
CCAAATTGTAGGTTCGTCCT+AGG - tig0024736:51490-51509 Msa1420050:CDS 45.0%
!!! TTCTGAGATTTTGGTGGCCT+AGG + tig0024736:51510-51529 None:intergenic 45.0%
GGCCACCAAAATCTCAGAAA+CGG - tig0024736:51511-51530 Msa1420050:CDS 45.0%
CTCAACTCTCTCTCTTGTCT+TGG + tig0024736:51668-51687 None:intergenic 45.0%
AGACAAGAGAGAGAGTTGAG+AGG - tig0024736:51668-51687 Msa1420050:CDS 45.0%
!! TGTGGGTATTGGAAAGCTAC+GGG - tig0024736:51716-51735 Msa1420050:intron 45.0%
TAGGAAAAGCTCCATCTGGA+AGG - tig0024736:51807-51826 Msa1420050:intron 45.0%
GGATGGATCAGATGGTTCAA+TGG + tig0024736:51864-51883 None:intergenic 45.0%
AGTTGTTCCCATTCCCAAAG+AGG + tig0024736:52627-52646 None:intergenic 45.0%
GGATAGAAACGAAAACCAGG+TGG + tig0024736:50692-50711 None:intergenic 45.0%
! CCAACTAGCTCTTCTTCTGT+AGG + tig0024736:50713-50732 None:intergenic 45.0%
CCTACAGAAGAAGAGCTAGT+TGG - tig0024736:50710-50729 Msa1420050:CDS 45.0%
CTTCTATCTACACAACCAGC+TGG - tig0024736:50733-50752 Msa1420050:CDS 45.0%
TATCTACACAACCAGCTGGA+AGG - tig0024736:50737-50756 Msa1420050:CDS 45.0%
TACGTACTTGGAAGGTTCCA+TGG + tig0024736:50821-50840 None:intergenic 45.0%
TGTAGGGTTGTATATGAGGC+AGG - tig0024736:51289-51308 Msa1420050:intron 45.0%
GTAGGGTTGTATATGAGGCA+GGG - tig0024736:51290-51309 Msa1420050:intron 45.0%
CCTAGGACGAACCTACAATT+TGG + tig0024736:51493-51512 None:intergenic 45.0%
CCAAATTGTAGGTTCGTCCT+AGG - tig0024736:51490-51509 Msa1420050:CDS 45.0%
!!! TTCTGAGATTTTGGTGGCCT+AGG + tig0024736:51510-51529 None:intergenic 45.0%
GGCCACCAAAATCTCAGAAA+CGG - tig0024736:51511-51530 Msa1420050:CDS 45.0%
CTCAACTCTCTCTCTTGTCT+TGG + tig0024736:51668-51687 None:intergenic 45.0%
AGACAAGAGAGAGAGTTGAG+AGG - tig0024736:51668-51687 Msa1420050:CDS 45.0%
!! TGTGGGTATTGGAAAGCTAC+GGG - tig0024736:51716-51735 Msa1420050:intron 45.0%
TAGGAAAAGCTCCATCTGGA+AGG - tig0024736:51807-51826 Msa1420050:intron 45.0%
GGATGGATCAGATGGTTCAA+TGG + tig0024736:51864-51883 None:intergenic 45.0%
AGTTGTTCCCATTCCCAAAG+AGG + tig0024736:52627-52646 None:intergenic 45.0%
!!! AATTTATGATAAATATTTTA+AGG + tig0024736:52063-52082 None:intergenic 5.0%
!!! AATTTATGATAAATATTTTA+AGG + tig0024736:52063-52082 None:intergenic 5.0%
! CATGCTTTTGTCCTTCCAGC+TGG + tig0024736:50751-50770 None:intergenic 50.0%
TATATGAGGCAGGGCGAAGA+GGG - tig0024736:51299-51318 Msa1420050:intron 50.0%
!!! GGCCGTTTCTGAGATTTTGG+TGG + tig0024736:51516-51535 None:intergenic 50.0%
!!! AGGGGCCGTTTCTGAGATTT+TGG + tig0024736:51519-51538 None:intergenic 50.0%
CAAGAGAGAGAGTTGAGAGG+TGG - tig0024736:51671-51690 Msa1420050:CDS 50.0%
ACCATTAGAGGGGCCAAAGA+CGG - tig0024736:52410-52429 Msa1420050:intron 50.0%
ATGAACCTGACGAGCCTCTT+TGG - tig0024736:52610-52629 Msa1420050:CDS 50.0%
TGAACCTGACGAGCCTCTTT+GGG - tig0024736:52611-52630 Msa1420050:CDS 50.0%
! TGACGAGCCTCTTTGGGAAT+GGG - tig0024736:52617-52636 Msa1420050:CDS 50.0%
! CATGCTTTTGTCCTTCCAGC+TGG + tig0024736:50751-50770 None:intergenic 50.0%
TATATGAGGCAGGGCGAAGA+GGG - tig0024736:51299-51318 Msa1420050:intron 50.0%
!!! GGCCGTTTCTGAGATTTTGG+TGG + tig0024736:51516-51535 None:intergenic 50.0%
!!! AGGGGCCGTTTCTGAGATTT+TGG + tig0024736:51519-51538 None:intergenic 50.0%
CAAGAGAGAGAGTTGAGAGG+TGG - tig0024736:51671-51690 Msa1420050:CDS 50.0%
ACCATTAGAGGGGCCAAAGA+CGG - tig0024736:52410-52429 Msa1420050:intron 50.0%
ATGAACCTGACGAGCCTCTT+TGG - tig0024736:52610-52629 Msa1420050:CDS 50.0%
TGAACCTGACGAGCCTCTTT+GGG - tig0024736:52611-52630 Msa1420050:CDS 50.0%
! TGACGAGCCTCTTTGGGAAT+GGG - tig0024736:52617-52636 Msa1420050:CDS 50.0%
GTATATGAGGCAGGGCGAAG+AGG - tig0024736:51298-51317 Msa1420050:intron 55.0%
TTTGCAGGGGAGAGATGTCG+TGG - tig0024736:51614-51633 Msa1420050:CDS 55.0%
GTCGTGGAGACACAGAGCAA+TGG - tig0024736:51630-51649 Msa1420050:CDS 55.0%
TCCGTCTTTGGCCCCTCTAA+TGG + tig0024736:52414-52433 None:intergenic 55.0%
CAAGTGGTAGCAGAGCTCGA+TGG - tig0024736:52474-52493 Msa1420050:intron 55.0%
ATCAACTTCCCACTCGGGAG+AGG - tig0024736:52506-52525 Msa1420050:CDS 55.0%
GAGGGTCAAGTGGCACGAAT+TGG - tig0024736:52562-52581 Msa1420050:CDS 55.0%
CATTCCCAAAGAGGCTCGTC+AGG + tig0024736:52618-52637 None:intergenic 55.0%
! CTGACGAGCCTCTTTGGGAA+TGG - tig0024736:52616-52635 Msa1420050:CDS 55.0%
GTATATGAGGCAGGGCGAAG+AGG - tig0024736:51298-51317 Msa1420050:intron 55.0%
TTTGCAGGGGAGAGATGTCG+TGG - tig0024736:51614-51633 Msa1420050:CDS 55.0%
GTCGTGGAGACACAGAGCAA+TGG - tig0024736:51630-51649 Msa1420050:CDS 55.0%
TCCGTCTTTGGCCCCTCTAA+TGG + tig0024736:52414-52433 None:intergenic 55.0%
CAAGTGGTAGCAGAGCTCGA+TGG - tig0024736:52474-52493 Msa1420050:intron 55.0%
ATCAACTTCCCACTCGGGAG+AGG - tig0024736:52506-52525 Msa1420050:CDS 55.0%
GAGGGTCAAGTGGCACGAAT+TGG - tig0024736:52562-52581 Msa1420050:CDS 55.0%
CATTCCCAAAGAGGCTCGTC+AGG + tig0024736:52618-52637 None:intergenic 55.0%
! CTGACGAGCCTCTTTGGGAA+TGG - tig0024736:52616-52635 Msa1420050:CDS 55.0%
ACTTCCCACTCGGGAGAGGT+AGG - tig0024736:52510-52529 Msa1420050:CDS 60.0%
CTTCCCACTCGGGAGAGGTA+GGG - tig0024736:52511-52530 Msa1420050:CDS 60.0%
TCTCCCTACCTCTCCCGAGT+GGG + tig0024736:52517-52536 None:intergenic 60.0%
ACTTCCCACTCGGGAGAGGT+AGG - tig0024736:52510-52529 Msa1420050:CDS 60.0%
CTTCCCACTCGGGAGAGGTA+GGG - tig0024736:52511-52530 Msa1420050:CDS 60.0%
TCTCCCTACCTCTCCCGAGT+GGG + tig0024736:52517-52536 None:intergenic 60.0%
CTCTCCCTACCTCTCCCGAG+TGG + tig0024736:52518-52537 None:intergenic 65.0%
CTCTCCCTACCTCTCCCGAG+TGG + tig0024736:52518-52537 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
tig0024736 gene 50677 52659 50677 ID=Msa1420050;Name=Msa1420050
tig0024736 mRNA 50677 52659 50677 ID=Msa1420050-mRNA-1;Parent=Msa1420050;Name=Msa1420050-mRNA-1;_AED=0.02;_eAED=0.02;_QI=0|0|0|1|1|1|3|0|251
tig0024736 exon 52503 52659 52503 ID=Msa1420050-mRNA-1:exon:1216;Parent=Msa1420050-mRNA-1
tig0024736 exon 51435 51715 51435 ID=Msa1420050-mRNA-1:exon:1215;Parent=Msa1420050-mRNA-1
tig0024736 exon 50677 50994 50677 ID=Msa1420050-mRNA-1:exon:1214;Parent=Msa1420050-mRNA-1
tig0024736 CDS 52503 52659 52503 ID=Msa1420050-mRNA-1:cds;Parent=Msa1420050-mRNA-1
tig0024736 CDS 51435 51715 51435 ID=Msa1420050-mRNA-1:cds;Parent=Msa1420050-mRNA-1
tig0024736 CDS 50677 50994 50677 ID=Msa1420050-mRNA-1:cds;Parent=Msa1420050-mRNA-1
Gene Sequence

>Msa1420050

ATGGAGGATTCCCCACCTGGTTTTCGTTTCTATCCTACAGAAGAAGAGCTAGTTGGCTTCTATCTACACAACCAGCTGGAAGGACAAAAGCATGAAGACATAAACAAAATCATACCTGTCATTGATATCAATGGCAAAGAGCCATGGAACCTTCCAAGGGAGAGATGTCGTGGAGACACAGAGCAATGGTTTTTCTTTTCACCAAGACAAGAGAGAGAGTTGAGAGGTGGAAGACCAAACAGAACAACATCTTGTGGGTATTGGAAAGCTACGGGTTCTCCTAGCTACGTTTACTCTTCTAACAACAAAGTTATTGGAATAAGGAAAACCATGGTGTTTTACATAGGAAAAGCTCCATCTGGAAGGAAAACAAAATGGAAGATGCATGAATATAAAGCCATTGAACCATCTGATCCATCCAATACAAACCCTCCTAAGCTGCGACACGAAATCAGCTTGTGTCGCGTTTATGTGATATCGGGAAGCTTTAGTTCATTTGATCGAAGACCATTAGAGGGGCCAAAGACGGAGTTACAACTTGATCATGTTGCTTCAACAAGTGCTCATCAACAAGTGGTAGCAGAGCTCGATGGATCAAACTTATCAACTTCCCACTCGGGAGAGGTAGGGAGAGACCCTGATGCTGCTCTTAATATTGGAGGGTCAAGTGGCACGAATTGGAATGATGTACCAAATAATGGGGTTGATGAACCTGACGAGCCTCTTTGGGAATGGGAACAACTAAATTGGATCTAA
Protein sequence

>Msa1420050

MEDSPPGFRFYPTEEELVGFYLHNQLEGQKHEDINKIIPVIDINGKEPWNLPRERCRGDTEQWFFFSPRQERELRGGRPNRTTSCGYWKATGSPSYVYSSNNKVIGIRKTMVFYIGKAPSGRKTKWKMHEYKAIEPSDPSNTNPPKLRHEISLCRVYVISGSFSSFDRRPLEGPKTELQLDHVASTSAHQQVVAELDGSNLSTSHSGEVGRDPDAALNIGGSSGTNWNDVPNNGVDEPDEPLWEWEQLNWI*