Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1423850 | sp|Q9M0E2|RL282_ARATH | 72.727 | 143 | 39 | 0 | 1 | 143 | 1 | 143 | 2.09e-71 | 213 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1423850 | I3TAF1 | 98.601 | 143 | 2 | 0 | 1 | 143 | 1 | 143 | 3.55e-98 | 288 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1270640 | Msa1423850 | 0.872147 | 3.975525e-67 | -8.615850e-47 |
| Msa1270710 | Msa1423850 | 0.866313 | 3.124719e-65 | -8.615850e-47 |
| Msa1180000 | Msa1423850 | 0.853203 | 2.790903e-61 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1423850 | MtrunA17_Chr8g0341511 | 98.601 | 143 | 2 | 0 | 1 | 143 | 1 | 143 | 6.83e-102 | 288 |
| Msa1423850 | MtrunA17_Chr2g0330561 | 91.608 | 143 | 12 | 0 | 1 | 143 | 1 | 143 | 1.10e-95 | 272 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1423850 | AT4G29410.1 | 72.727 | 143 | 39 | 0 | 1 | 143 | 1 | 143 | 2.12e-72 | 213 |
| Msa1423850 | AT4G29410.2 | 72.727 | 143 | 39 | 0 | 1 | 143 | 1 | 143 | 2.12e-72 | 213 |
| Msa1423850 | AT2G19730.2 | 72.727 | 143 | 39 | 0 | 1 | 143 | 1 | 143 | 3.25e-71 | 210 |
| Msa1423850 | AT2G19730.1 | 72.727 | 143 | 39 | 0 | 1 | 143 | 1 | 143 | 3.25e-71 | 210 |
| Msa1423850 | AT2G19730.3 | 72.727 | 143 | 39 | 0 | 1 | 143 | 1 | 143 | 3.25e-71 | 210 |
Find 44 sgRNAs with CRISPR-Local
Find 260 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAAGAAGAACAACTCTTTCT+TGG | 0.235683 | tig0025581:+19956 | Msa1423850:CDS |
| TCTTTCTTGGTGAAGGAGTT+TGG | 0.288497 | tig0025581:+19969 | Msa1423850:CDS |
| GATGTAACTATCTATGCTTC+TGG | 0.352325 | tig0025581:+22153 | Msa1423850:three_prime_UTR |
| GACAAAGAAGAAGAAGAAAA+TGG | 0.371864 | tig0025581:+19899 | Msa1423850:exon |
| CAGTACCAGGGCCACTCATA+TGG | 0.374084 | tig0025581:+19925 | Msa1423850:CDS |
| AAGAAAATGGCGACAGTACC+AGG | 0.376148 | tig0025581:+19912 | Msa1423850:exon |
| CCTCTTCTTGACACCGGACT+TGG | 0.386828 | tig0025581:-21926 | None:intergenic |
| GGCAAAGGCCGTTCAAAATC+AGG | 0.396746 | tig0025581:+21017 | Msa1423850:CDS |
| CACCGGACTTGGCAACTTTG+AGG | 0.398692 | tig0025581:-21915 | None:intergenic |
| CAGAGAACTTGTAGGAGTTA+AGG | 0.403576 | tig0025581:-20043 | None:intergenic |
| TTGTCTGCAACGCACAAACT+AGG | 0.427367 | tig0025581:-19881 | None:intergenic |
| AAAGCTAACAAGGTATGTTC+TGG | 0.432418 | tig0025581:-22113 | None:intergenic |
| ACTCATGAGTCATAGACAAT+AGG | 0.451211 | tig0025581:-22067 | None:intergenic |
| TAAAGATCAGTCGGTGTTGT+TGG | 0.464399 | tig0025581:+20915 | Msa1423850:CDS |
| CTTAACTCCTACAAGTTCTC+TGG | 0.465620 | tig0025581:+20044 | Msa1423850:CDS |
| AGAGCTGCCTTCTTCAGATC+AGG | 0.476094 | tig0025581:-21865 | None:intergenic |
| AGCCTCAAAGTTGCCAAGTC+CGG | 0.480021 | tig0025581:+21913 | Msa1423850:CDS |
| GAAGGCTTGTTCTGCTTCCT+CGG | 0.485520 | tig0025581:-20949 | None:intergenic |
| ATCTTTACCAGCAGGCTGAA+TGG | 0.487221 | tig0025581:-20899 | None:intergenic |
| GAACAACTCTTTCTTGGTGA+AGG | 0.490005 | tig0025581:+19962 | Msa1423850:CDS |
| GAAGAGGAACAGACATGCTT+AGG | 0.493706 | tig0025581:+21942 | Msa1423850:CDS |
| ATCTCCCATATGAGTGGCCC+TGG | 0.496412 | tig0025581:-19930 | None:intergenic |
| TCACAAATCTATCATGAAGA+AGG | 0.505696 | tig0025581:+20981 | Msa1423850:CDS |
| TGTCTGCAACGCACAAACTA+GGG | 0.528109 | tig0025581:-19880 | None:intergenic |
| GATCATACCAGAGAACTTGT+AGG | 0.529045 | tig0025581:-20051 | None:intergenic |
| ACTGTGACCATTCAGCCTGC+TGG | 0.535709 | tig0025581:+20892 | Msa1423850:CDS |
| AGTACCAGGGCCACTCATAT+GGG | 0.555358 | tig0025581:+19926 | Msa1423850:CDS |
| TGAAGAAGGCAGCTCTTGCA+AGG | 0.567533 | tig0025581:+21872 | Msa1423850:CDS |
| CTACAGGCCTGATCTGAAGA+AGG | 0.570064 | tig0025581:+21858 | Msa1423850:CDS |
| ACCGACTGATCTTTACCAGC+AGG | 0.573968 | tig0025581:-20907 | None:intergenic |
| GGAGTTCCGCAGGATGGCAA+AGG | 0.575137 | tig0025581:+21002 | Msa1423850:CDS |
| GACAGGGTTAAAGACAGAAA+CGG | 0.587452 | tig0025581:-21975 | None:intergenic |
| TCATGAAGAAGGAGTTCCGC+AGG | 0.590257 | tig0025581:+20992 | Msa1423850:CDS |
| CCAAGTCCGGTGTCAAGAAG+AGG | 0.591931 | tig0025581:+21926 | Msa1423850:CDS |
| GCCTGCTGGTAAAGATCAGT+CGG | 0.593104 | tig0025581:+20906 | Msa1423850:CDS |
| AACAAATATGAAAGCTAACA+AGG | 0.601806 | tig0025581:-22123 | None:intergenic |
| TCTGTTCCTCTTCTTGACAC+CGG | 0.602415 | tig0025581:-21932 | None:intergenic |
| GATTTGTGAGACAAAGCAGA+AGG | 0.606292 | tig0025581:-20967 | None:intergenic |
| AGGTGGCAGATAATTACTAC+AGG | 0.609077 | tig0025581:+21842 | Msa1423850:intron |
| GAACGGCCTTTGCCATCCTG+CGG | 0.614382 | tig0025581:-21008 | None:intergenic |
| TTCACGATCTCCCATATGAG+TGG | 0.628127 | tig0025581:-19936 | None:intergenic |
| GAAGAAGGAGTTCCGCAGGA+TGG | 0.644679 | tig0025581:+20996 | Msa1423850:CDS |
| AGAAAATGGCGACAGTACCA+GGG | 0.649815 | tig0025581:+19913 | Msa1423850:exon |
| TGTTGGCTACAACTAAGCCG+AGG | 0.730661 | tig0025581:+20932 | Msa1423850:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTATTGTTTTTGAAAAT+TGG | + | tig0025581:20163-20182 | Msa1423850:intron | 10.0% |
| !!! | TTTTTATTGTTTTTGAAAAT+TGG | + | tig0025581:20163-20182 | Msa1423850:intron | 10.0% |
| !!! | TTTTTTTTTAACAATGATAG+TGG | + | tig0025581:20329-20348 | Msa1423850:intron | 15.0% |
| !! | AAAGTCAAATCTAAATAATT+AGG | - | tig0025581:21158-21177 | None:intergenic | 15.0% |
| !!! | TTTTTTTTTAACAATGATAG+TGG | + | tig0025581:20329-20348 | Msa1423850:intron | 15.0% |
| !! | AAAGTCAAATCTAAATAATT+AGG | - | tig0025581:21158-21177 | None:intergenic | 15.0% |
| !!! | TTTTTTGTGATTCTGATAAT+GGG | + | tig0025581:20083-20102 | Msa1423850:intron | 20.0% |
| !! | ATAACATTATCATCATAATG+AGG | - | tig0025581:20206-20225 | None:intergenic | 20.0% |
| !!! | GGTAAAATTTTAATTGATTC+TGG | + | tig0025581:20429-20448 | Msa1423850:intron | 20.0% |
| !!! | GTATTTTAATTGTTTTGTCT+TGG | + | tig0025581:20475-20494 | Msa1423850:intron | 20.0% |
| !!! | TTTTTTGTGTTTCTGATAAT+GGG | + | tig0025581:20527-20546 | Msa1423850:intron | 20.0% |
| !! | AACTAAAAATCAACCAAAAT+TGG | - | tig0025581:20585-20604 | None:intergenic | 20.0% |
| !! | TTAACATAAACTATGTTGAT+TGG | + | tig0025581:20605-20624 | Msa1423850:intron | 20.0% |
| !!! | GGTAAAATTTTAATTGATTC+TGG | + | tig0025581:20429-20448 | Msa1423850:intron | 20.0% |
| !!! | AAAAATTACCTGATTTTGAA+CGG | - | tig0025581:21028-21047 | None:intergenic | 20.0% |
| !!! | AGTTTTATAGAACATATGAA+TGG | + | tig0025581:21066-21085 | Msa1423850:intron | 20.0% |
| !! | TCATATAAACAAAAAGCAAA+AGG | - | tig0025581:21368-21387 | None:intergenic | 20.0% |
| !! | TCAATGCATTGTATTTATAA+AGG | + | tig0025581:21392-21411 | Msa1423850:intron | 20.0% |
| !! | AAAATATGAACTTGATGAAT+GGG | - | tig0025581:21448-21467 | None:intergenic | 20.0% |
| !! | AAAAATATGAACTTGATGAA+TGG | - | tig0025581:21449-21468 | None:intergenic | 20.0% |
| !! | AATGTTATGTTAAAATACGA+AGG | - | tig0025581:21810-21829 | None:intergenic | 20.0% |
| !!! | TTTAACATAACATTTTGATG+TGG | + | tig0025581:21816-21835 | Msa1423850:intron | 20.0% |
| !! | GTTCAAAAGCAAAAAATAAT+TGG | - | tig0025581:22016-22035 | None:intergenic | 20.0% |
| !! | AAATGATGTAACAAAAACAA+AGG | - | tig0025581:22038-22057 | None:intergenic | 20.0% |
| !!! | TTTTTTGTGATTCTGATAAT+GGG | + | tig0025581:20083-20102 | Msa1423850:intron | 20.0% |
| !! | ATAACATTATCATCATAATG+AGG | - | tig0025581:20206-20225 | None:intergenic | 20.0% |
| !!! | GGTAAAATTTTAATTGATTC+TGG | + | tig0025581:20429-20448 | Msa1423850:intron | 20.0% |
| !!! | GTATTTTAATTGTTTTGTCT+TGG | + | tig0025581:20475-20494 | Msa1423850:intron | 20.0% |
| !!! | TTTTTTGTGTTTCTGATAAT+GGG | + | tig0025581:20527-20546 | Msa1423850:intron | 20.0% |
| !! | AACTAAAAATCAACCAAAAT+TGG | - | tig0025581:20585-20604 | None:intergenic | 20.0% |
| !! | TTAACATAAACTATGTTGAT+TGG | + | tig0025581:20605-20624 | Msa1423850:intron | 20.0% |
| !!! | GGTAAAATTTTAATTGATTC+TGG | + | tig0025581:20429-20448 | Msa1423850:intron | 20.0% |
| !!! | AAAAATTACCTGATTTTGAA+CGG | - | tig0025581:21028-21047 | None:intergenic | 20.0% |
| !!! | AGTTTTATAGAACATATGAA+TGG | + | tig0025581:21066-21085 | Msa1423850:intron | 20.0% |
| !! | TCATATAAACAAAAAGCAAA+AGG | - | tig0025581:21368-21387 | None:intergenic | 20.0% |
| !! | TCAATGCATTGTATTTATAA+AGG | + | tig0025581:21392-21411 | Msa1423850:intron | 20.0% |
| !! | AAAATATGAACTTGATGAAT+GGG | - | tig0025581:21448-21467 | None:intergenic | 20.0% |
| !! | AAAAATATGAACTTGATGAA+TGG | - | tig0025581:21449-21468 | None:intergenic | 20.0% |
| !! | AATGTTATGTTAAAATACGA+AGG | - | tig0025581:21810-21829 | None:intergenic | 20.0% |
| !!! | TTTAACATAACATTTTGATG+TGG | + | tig0025581:21816-21835 | Msa1423850:intron | 20.0% |
| !! | GTTCAAAAGCAAAAAATAAT+TGG | - | tig0025581:22016-22035 | None:intergenic | 20.0% |
| !! | AAATGATGTAACAAAAACAA+AGG | - | tig0025581:22038-22057 | None:intergenic | 20.0% |
| ! | GAATCACAAAAAAGAGAAAA+GGG | - | tig0025581:20076-20095 | None:intergenic | 25.0% |
| ! | AGAATCACAAAAAAGAGAAA+AGG | - | tig0025581:20077-20096 | None:intergenic | 25.0% |
| !!! | CTTTTTTGTGATTCTGATAA+TGG | + | tig0025581:20082-20101 | Msa1423850:intron | 25.0% |
| ! | TATATTTCACTCCTATCATA+GGG | - | tig0025581:20245-20264 | None:intergenic | 25.0% |
| ! | ATATATTTCACTCCTATCAT+AGG | - | tig0025581:20246-20265 | None:intergenic | 25.0% |
| !!! | TTTAACAATGATAGTGGTTA+TGG | + | tig0025581:20335-20354 | Msa1423850:intron | 25.0% |
| ! | AAATGTACTTCAATTGTTAG+TGG | + | tig0025581:20408-20427 | Msa1423850:intron | 25.0% |
| !!! | GTTTTTTGTGTTTCTGATAA+TGG | + | tig0025581:20526-20545 | Msa1423850:intron | 25.0% |
| !!! | TCTTATTTTGTTGCCAATTT+TGG | + | tig0025581:20569-20588 | Msa1423850:intron | 25.0% |
| ! | ATTGTCTGATTAACATAGTA+CGG | + | tig0025581:20683-20702 | Msa1423850:intron | 25.0% |
| !!! | TCATGTTTTTCAATTGTTAG+TGG | + | tig0025581:20760-20779 | Msa1423850:intron | 25.0% |
| ! | AATGAATCTTTGTGTTTCAA+TGG | + | tig0025581:20815-20834 | Msa1423850:intron | 25.0% |
| !!! | AATTTTTTCAAACTCTGGTT+TGG | + | tig0025581:21041-21060 | Msa1423850:intron | 25.0% |
| ! | AACAAATTGAAAAATAGCCA+TGG | - | tig0025581:21221-21240 | None:intergenic | 25.0% |
| !! | CATGCACAATTTTTATATCA+TGG | + | tig0025581:21682-21701 | Msa1423850:intron | 25.0% |
| ! | AACAAATATGAAAGCTAACA+AGG | - | tig0025581:22126-22145 | None:intergenic | 25.0% |
| !! | TAAAACAAACTTTTCTCATG+TGG | - | tig0025581:22188-22207 | None:intergenic | 25.0% |
| ! | GAATCACAAAAAAGAGAAAA+GGG | - | tig0025581:20076-20095 | None:intergenic | 25.0% |
| ! | AGAATCACAAAAAAGAGAAA+AGG | - | tig0025581:20077-20096 | None:intergenic | 25.0% |
| !!! | CTTTTTTGTGATTCTGATAA+TGG | + | tig0025581:20082-20101 | Msa1423850:intron | 25.0% |
| ! | TATATTTCACTCCTATCATA+GGG | - | tig0025581:20245-20264 | None:intergenic | 25.0% |
| ! | ATATATTTCACTCCTATCAT+AGG | - | tig0025581:20246-20265 | None:intergenic | 25.0% |
| !!! | TTTAACAATGATAGTGGTTA+TGG | + | tig0025581:20335-20354 | Msa1423850:intron | 25.0% |
| ! | AAATGTACTTCAATTGTTAG+TGG | + | tig0025581:20408-20427 | Msa1423850:intron | 25.0% |
| !!! | GTTTTTTGTGTTTCTGATAA+TGG | + | tig0025581:20526-20545 | Msa1423850:intron | 25.0% |
| !!! | TCTTATTTTGTTGCCAATTT+TGG | + | tig0025581:20569-20588 | Msa1423850:intron | 25.0% |
| ! | ATTGTCTGATTAACATAGTA+CGG | + | tig0025581:20683-20702 | Msa1423850:intron | 25.0% |
| !!! | TCATGTTTTTCAATTGTTAG+TGG | + | tig0025581:20760-20779 | Msa1423850:intron | 25.0% |
| ! | AATGAATCTTTGTGTTTCAA+TGG | + | tig0025581:20815-20834 | Msa1423850:intron | 25.0% |
| !!! | AATTTTTTCAAACTCTGGTT+TGG | + | tig0025581:21041-21060 | Msa1423850:intron | 25.0% |
| ! | AACAAATTGAAAAATAGCCA+TGG | - | tig0025581:21221-21240 | None:intergenic | 25.0% |
| !! | CATGCACAATTTTTATATCA+TGG | + | tig0025581:21682-21701 | Msa1423850:intron | 25.0% |
| ! | AACAAATATGAAAGCTAACA+AGG | - | tig0025581:22126-22145 | None:intergenic | 25.0% |
| !! | TAAAACAAACTTTTCTCATG+TGG | - | tig0025581:22188-22207 | None:intergenic | 25.0% |
| GACAAAGAAGAAGAAGAAAA+TGG | + | tig0025581:19899-19918 | Msa1423850:exon | 30.0% | |
| !! | TGATTCTGATAATGGGTATT+TGG | + | tig0025581:20090-20109 | Msa1423850:intron | 30.0% |
| ATTTAAACTTCCCCTATGAT+AGG | + | tig0025581:20231-20250 | Msa1423850:intron | 30.0% | |
| ATATTTCACTCCTATCATAG+GGG | - | tig0025581:20244-20263 | None:intergenic | 30.0% | |
| !! | AAGTAGAAGTTTTGCTGATT+TGG | + | tig0025581:20281-20300 | Msa1423850:intron | 30.0% |
| !!! | AGTAGAAGTTTTGCTGATTT+GGG | + | tig0025581:20282-20301 | Msa1423850:intron | 30.0% |
| CTTACAATGTACATGTTCTA+GGG | + | tig0025581:20504-20523 | Msa1423850:intron | 30.0% | |
| TCCTTACATTGATGTATGAT+AGG | + | tig0025581:20853-20872 | Msa1423850:intron | 30.0% | |
| ACCTATCATACATCAATGTA+AGG | - | tig0025581:20857-20876 | None:intergenic | 30.0% | |
| TCACAAATCTATCATGAAGA+AGG | + | tig0025581:20981-21000 | Msa1423850:CDS | 30.0% | |
| !!! | CAGGTAATTTTTTCAAACTC+TGG | + | tig0025581:21036-21055 | Msa1423850:intron | 30.0% |
| !!! | TGATTTTGGTGTTATGTTTC+TGG | + | tig0025581:21269-21288 | Msa1423850:intron | 30.0% |
| ! | GTATTTATAAAGGCGTAAGA+TGG | + | tig0025581:21402-21421 | Msa1423850:intron | 30.0% |
| TGAAATATTCATGTTACGCT+TGG | + | tig0025581:21544-21563 | Msa1423850:intron | 30.0% | |
| ! | GCACAATTTTTATATCATGG+TGG | + | tig0025581:21685-21704 | Msa1423850:intron | 30.0% |
| ATGTTAAAATACGAAGGAAC+TGG | - | tig0025581:21804-21823 | None:intergenic | 30.0% | |
| !! | ATAACATTTTGATGTGGTAC+AGG | + | tig0025581:21822-21841 | Msa1423850:intron | 30.0% |
| TAATTGGACTTCAAAAACTC+AGG | - | tig0025581:22000-22019 | None:intergenic | 30.0% | |
| GACAAAGAAGAAGAAGAAAA+TGG | + | tig0025581:19899-19918 | Msa1423850:exon | 30.0% | |
| !! | TGATTCTGATAATGGGTATT+TGG | + | tig0025581:20090-20109 | Msa1423850:intron | 30.0% |
| ATTTAAACTTCCCCTATGAT+AGG | + | tig0025581:20231-20250 | Msa1423850:intron | 30.0% | |
| ATATTTCACTCCTATCATAG+GGG | - | tig0025581:20244-20263 | None:intergenic | 30.0% | |
| !! | AAGTAGAAGTTTTGCTGATT+TGG | + | tig0025581:20281-20300 | Msa1423850:intron | 30.0% |
| !!! | AGTAGAAGTTTTGCTGATTT+GGG | + | tig0025581:20282-20301 | Msa1423850:intron | 30.0% |
| CTTACAATGTACATGTTCTA+GGG | + | tig0025581:20504-20523 | Msa1423850:intron | 30.0% | |
| TCCTTACATTGATGTATGAT+AGG | + | tig0025581:20853-20872 | Msa1423850:intron | 30.0% | |
| ACCTATCATACATCAATGTA+AGG | - | tig0025581:20857-20876 | None:intergenic | 30.0% | |
| TCACAAATCTATCATGAAGA+AGG | + | tig0025581:20981-21000 | Msa1423850:CDS | 30.0% | |
| !!! | CAGGTAATTTTTTCAAACTC+TGG | + | tig0025581:21036-21055 | Msa1423850:intron | 30.0% |
| !!! | TGATTTTGGTGTTATGTTTC+TGG | + | tig0025581:21269-21288 | Msa1423850:intron | 30.0% |
| ! | GTATTTATAAAGGCGTAAGA+TGG | + | tig0025581:21402-21421 | Msa1423850:intron | 30.0% |
| TGAAATATTCATGTTACGCT+TGG | + | tig0025581:21544-21563 | Msa1423850:intron | 30.0% | |
| ! | GCACAATTTTTATATCATGG+TGG | + | tig0025581:21685-21704 | Msa1423850:intron | 30.0% |
| ATGTTAAAATACGAAGGAAC+TGG | - | tig0025581:21804-21823 | None:intergenic | 30.0% | |
| !! | ATAACATTTTGATGTGGTAC+AGG | + | tig0025581:21822-21841 | Msa1423850:intron | 30.0% |
| TAATTGGACTTCAAAAACTC+AGG | - | tig0025581:22000-22019 | None:intergenic | 30.0% | |
| GAAGAAGAACAACTCTTTCT+TGG | + | tig0025581:19956-19975 | Msa1423850:CDS | 35.0% | |
| ! | TTAATTGATTCTGGTGTGCT+AGG | + | tig0025581:20438-20457 | Msa1423850:intron | 35.0% |
| CCTAGAACATGTACATTGTA+AGG | - | tig0025581:20506-20525 | None:intergenic | 35.0% | |
| CCTTACAATGTACATGTTCT+AGG | + | tig0025581:20503-20522 | Msa1423850:intron | 35.0% | |
| ! | TTAACATAGTACGGTGTTGA+AGG | + | tig0025581:20692-20711 | Msa1423850:intron | 35.0% |
| ACATTGATGTATGATAGGTC+TGG | + | tig0025581:20858-20877 | Msa1423850:intron | 35.0% | |
| ! | TTTGTTGTGTTCCCTTGAAA+AGG | + | tig0025581:21235-21254 | Msa1423850:intron | 35.0% |
| ! | CATTCAAGTTTCACAAGCAA+GGG | - | tig0025581:21333-21352 | None:intergenic | 35.0% |
| ! | TCATTCAAGTTTCACAAGCA+AGG | - | tig0025581:21334-21353 | None:intergenic | 35.0% |
| ! | TGCAGCATCATTTTGTAGAA+CGG | - | tig0025581:21475-21494 | None:intergenic | 35.0% |
| ! | TGAGGCTCTAACATATAAGT+AGG | + | tig0025581:21499-21518 | Msa1423850:intron | 35.0% |
| ATATAAGTAGGATCCCTATG+TGG | + | tig0025581:21511-21530 | Msa1423850:intron | 35.0% | |
| TATAAGTAGGATCCCTATGT+GGG | + | tig0025581:21512-21531 | Msa1423850:intron | 35.0% | |
| TCATTGAAGAAACCCACATA+GGG | - | tig0025581:21527-21546 | None:intergenic | 35.0% | |
| TTCATTGAAGAAACCCACAT+AGG | - | tig0025581:21528-21547 | None:intergenic | 35.0% | |
| GGAAACAAGTGAAATACTTG+TGG | - | tig0025581:21646-21665 | None:intergenic | 35.0% | |
| AAATTGTGCATGACAGACAA+AGG | - | tig0025581:21674-21693 | None:intergenic | 35.0% | |
| ACTCATGAGTCATAGACAAT+AGG | - | tig0025581:22070-22089 | None:intergenic | 35.0% | |
| AAAGCTAACAAGGTATGTTC+TGG | - | tig0025581:22116-22135 | None:intergenic | 35.0% | |
| GATGTAACTATCTATGCTTC+TGG | + | tig0025581:22153-22172 | Msa1423850:three_prime_UTR | 35.0% | |
| ! | AACTTTTCTCATGTGGTACA+CGG | - | tig0025581:22181-22200 | None:intergenic | 35.0% |
| GAAGAAGAACAACTCTTTCT+TGG | + | tig0025581:19956-19975 | Msa1423850:CDS | 35.0% | |
| ! | TTAATTGATTCTGGTGTGCT+AGG | + | tig0025581:20438-20457 | Msa1423850:intron | 35.0% |
| CCTAGAACATGTACATTGTA+AGG | - | tig0025581:20506-20525 | None:intergenic | 35.0% | |
| CCTTACAATGTACATGTTCT+AGG | + | tig0025581:20503-20522 | Msa1423850:intron | 35.0% | |
| ! | TTAACATAGTACGGTGTTGA+AGG | + | tig0025581:20692-20711 | Msa1423850:intron | 35.0% |
| ACATTGATGTATGATAGGTC+TGG | + | tig0025581:20858-20877 | Msa1423850:intron | 35.0% | |
| ! | TTTGTTGTGTTCCCTTGAAA+AGG | + | tig0025581:21235-21254 | Msa1423850:intron | 35.0% |
| ! | CATTCAAGTTTCACAAGCAA+GGG | - | tig0025581:21333-21352 | None:intergenic | 35.0% |
| ! | TCATTCAAGTTTCACAAGCA+AGG | - | tig0025581:21334-21353 | None:intergenic | 35.0% |
| ! | TGCAGCATCATTTTGTAGAA+CGG | - | tig0025581:21475-21494 | None:intergenic | 35.0% |
| ! | TGAGGCTCTAACATATAAGT+AGG | + | tig0025581:21499-21518 | Msa1423850:intron | 35.0% |
| ATATAAGTAGGATCCCTATG+TGG | + | tig0025581:21511-21530 | Msa1423850:intron | 35.0% | |
| TATAAGTAGGATCCCTATGT+GGG | + | tig0025581:21512-21531 | Msa1423850:intron | 35.0% | |
| TCATTGAAGAAACCCACATA+GGG | - | tig0025581:21527-21546 | None:intergenic | 35.0% | |
| TTCATTGAAGAAACCCACAT+AGG | - | tig0025581:21528-21547 | None:intergenic | 35.0% | |
| GGAAACAAGTGAAATACTTG+TGG | - | tig0025581:21646-21665 | None:intergenic | 35.0% | |
| AAATTGTGCATGACAGACAA+AGG | - | tig0025581:21674-21693 | None:intergenic | 35.0% | |
| ACTCATGAGTCATAGACAAT+AGG | - | tig0025581:22070-22089 | None:intergenic | 35.0% | |
| AAAGCTAACAAGGTATGTTC+TGG | - | tig0025581:22116-22135 | None:intergenic | 35.0% | |
| GATGTAACTATCTATGCTTC+TGG | + | tig0025581:22153-22172 | Msa1423850:three_prime_UTR | 35.0% | |
| ! | AACTTTTCTCATGTGGTACA+CGG | - | tig0025581:22181-22200 | None:intergenic | 35.0% |
| GAACAACTCTTTCTTGGTGA+AGG | + | tig0025581:19962-19981 | Msa1423850:CDS | 40.0% | |
| TCTTTCTTGGTGAAGGAGTT+TGG | + | tig0025581:19969-19988 | Msa1423850:CDS | 40.0% | |
| CAGAGAACTTGTAGGAGTTA+AGG | - | tig0025581:20046-20065 | None:intergenic | 40.0% | |
| CTTAACTCCTACAAGTTCTC+TGG | + | tig0025581:20044-20063 | Msa1423850:CDS | 40.0% | |
| GATCATACCAGAGAACTTGT+AGG | - | tig0025581:20054-20073 | None:intergenic | 40.0% | |
| !! | TAAAGATCAGTCGGTGTTGT+TGG | + | tig0025581:20915-20934 | Msa1423850:CDS | 40.0% |
| GATTTGTGAGACAAAGCAGA+AGG | - | tig0025581:20970-20989 | None:intergenic | 40.0% | |
| AACACCAAAATCACTCATCC+AGG | - | tig0025581:21262-21281 | None:intergenic | 40.0% | |
| AAAATGATGCTGCAGTGATG+AGG | + | tig0025581:21481-21500 | Msa1423850:intron | 40.0% | |
| CGCTATTAGCACAAATCAGA+GGG | - | tig0025581:21773-21792 | None:intergenic | 40.0% | |
| TCGCTATTAGCACAAATCAG+AGG | - | tig0025581:21774-21793 | None:intergenic | 40.0% | |
| !! | ACATTTTGATGTGGTACAGG+TGG | + | tig0025581:21825-21844 | Msa1423850:intron | 40.0% |
| AGGTGGCAGATAATTACTAC+AGG | + | tig0025581:21842-21861 | Msa1423850:intron | 40.0% | |
| GACAGGGTTAAAGACAGAAA+CGG | - | tig0025581:21978-21997 | None:intergenic | 40.0% | |
| GACTTCAAAAACTCAGGACA+GGG | - | tig0025581:21994-22013 | None:intergenic | 40.0% | |
| ! | ACTTTTCTCATGTGGTACAC+GGG | - | tig0025581:22180-22199 | None:intergenic | 40.0% |
| GAACAACTCTTTCTTGGTGA+AGG | + | tig0025581:19962-19981 | Msa1423850:CDS | 40.0% | |
| TCTTTCTTGGTGAAGGAGTT+TGG | + | tig0025581:19969-19988 | Msa1423850:CDS | 40.0% | |
| CAGAGAACTTGTAGGAGTTA+AGG | - | tig0025581:20046-20065 | None:intergenic | 40.0% | |
| CTTAACTCCTACAAGTTCTC+TGG | + | tig0025581:20044-20063 | Msa1423850:CDS | 40.0% | |
| GATCATACCAGAGAACTTGT+AGG | - | tig0025581:20054-20073 | None:intergenic | 40.0% | |
| !! | TAAAGATCAGTCGGTGTTGT+TGG | + | tig0025581:20915-20934 | Msa1423850:CDS | 40.0% |
| GATTTGTGAGACAAAGCAGA+AGG | - | tig0025581:20970-20989 | None:intergenic | 40.0% | |
| AACACCAAAATCACTCATCC+AGG | - | tig0025581:21262-21281 | None:intergenic | 40.0% | |
| AAAATGATGCTGCAGTGATG+AGG | + | tig0025581:21481-21500 | Msa1423850:intron | 40.0% | |
| CGCTATTAGCACAAATCAGA+GGG | - | tig0025581:21773-21792 | None:intergenic | 40.0% | |
| TCGCTATTAGCACAAATCAG+AGG | - | tig0025581:21774-21793 | None:intergenic | 40.0% | |
| !! | ACATTTTGATGTGGTACAGG+TGG | + | tig0025581:21825-21844 | Msa1423850:intron | 40.0% |
| AGGTGGCAGATAATTACTAC+AGG | + | tig0025581:21842-21861 | Msa1423850:intron | 40.0% | |
| GACAGGGTTAAAGACAGAAA+CGG | - | tig0025581:21978-21997 | None:intergenic | 40.0% | |
| GACTTCAAAAACTCAGGACA+GGG | - | tig0025581:21994-22013 | None:intergenic | 40.0% | |
| ! | ACTTTTCTCATGTGGTACAC+GGG | - | tig0025581:22180-22199 | None:intergenic | 40.0% |
| TGTCTGCAACGCACAAACTA+GGG | - | tig0025581:19883-19902 | None:intergenic | 45.0% | |
| TTGTCTGCAACGCACAAACT+AGG | - | tig0025581:19884-19903 | None:intergenic | 45.0% | |
| AAGAAAATGGCGACAGTACC+AGG | + | tig0025581:19912-19931 | Msa1423850:exon | 45.0% | |
| AGAAAATGGCGACAGTACCA+GGG | + | tig0025581:19913-19932 | Msa1423850:exon | 45.0% | |
| TTCACGATCTCCCATATGAG+TGG | - | tig0025581:19939-19958 | None:intergenic | 45.0% | |
| ATCTTTACCAGCAGGCTGAA+TGG | - | tig0025581:20902-20921 | None:intergenic | 45.0% | |
| !! | CTGTTTGCTGTCAATTGCCA+TGG | + | tig0025581:21201-21220 | Msa1423850:intron | 45.0% |
| ! | CTCATCCAGGTCCTTTTCAA+GGG | - | tig0025581:21249-21268 | None:intergenic | 45.0% |
| ! | ACTCATCCAGGTCCTTTTCA+AGG | - | tig0025581:21250-21269 | None:intergenic | 45.0% |
| ! | AGGACCTGGATGAGTGATTT+TGG | + | tig0025581:21255-21274 | Msa1423850:intron | 45.0% |
| !! | GCATGACAGACAAAGGCATT+AGG | - | tig0025581:21667-21686 | None:intergenic | 45.0% |
| AGCACAAATCAGAGGGACAT+AGG | - | tig0025581:21766-21785 | None:intergenic | 45.0% | |
| TCTGTTCCTCTTCTTGACAC+CGG | - | tig0025581:21935-21954 | None:intergenic | 45.0% | |
| GAAGAGGAACAGACATGCTT+AGG | + | tig0025581:21942-21961 | Msa1423850:CDS | 45.0% | |
| GGACTTCAAAAACTCAGGAC+AGG | - | tig0025581:21995-22014 | None:intergenic | 45.0% | |
| TGTCTGCAACGCACAAACTA+GGG | - | tig0025581:19883-19902 | None:intergenic | 45.0% | |
| TTGTCTGCAACGCACAAACT+AGG | - | tig0025581:19884-19903 | None:intergenic | 45.0% | |
| AAGAAAATGGCGACAGTACC+AGG | + | tig0025581:19912-19931 | Msa1423850:exon | 45.0% | |
| AGAAAATGGCGACAGTACCA+GGG | + | tig0025581:19913-19932 | Msa1423850:exon | 45.0% | |
| TTCACGATCTCCCATATGAG+TGG | - | tig0025581:19939-19958 | None:intergenic | 45.0% | |
| ATCTTTACCAGCAGGCTGAA+TGG | - | tig0025581:20902-20921 | None:intergenic | 45.0% | |
| !! | CTGTTTGCTGTCAATTGCCA+TGG | + | tig0025581:21201-21220 | Msa1423850:intron | 45.0% |
| ! | CTCATCCAGGTCCTTTTCAA+GGG | - | tig0025581:21249-21268 | None:intergenic | 45.0% |
| ! | ACTCATCCAGGTCCTTTTCA+AGG | - | tig0025581:21250-21269 | None:intergenic | 45.0% |
| ! | AGGACCTGGATGAGTGATTT+TGG | + | tig0025581:21255-21274 | Msa1423850:intron | 45.0% |
| !! | GCATGACAGACAAAGGCATT+AGG | - | tig0025581:21667-21686 | None:intergenic | 45.0% |
| AGCACAAATCAGAGGGACAT+AGG | - | tig0025581:21766-21785 | None:intergenic | 45.0% | |
| TCTGTTCCTCTTCTTGACAC+CGG | - | tig0025581:21935-21954 | None:intergenic | 45.0% | |
| GAAGAGGAACAGACATGCTT+AGG | + | tig0025581:21942-21961 | Msa1423850:CDS | 45.0% | |
| GGACTTCAAAAACTCAGGAC+AGG | - | tig0025581:21995-22014 | None:intergenic | 45.0% | |
| AGTACCAGGGCCACTCATAT+GGG | + | tig0025581:19926-19945 | Msa1423850:CDS | 50.0% | |
| GCCTGCTGGTAAAGATCAGT+CGG | + | tig0025581:20906-20925 | Msa1423850:CDS | 50.0% | |
| ACCGACTGATCTTTACCAGC+AGG | - | tig0025581:20910-20929 | None:intergenic | 50.0% | |
| ! | TGTTGGCTACAACTAAGCCG+AGG | + | tig0025581:20932-20951 | Msa1423850:CDS | 50.0% |
| ! | GAAGGCTTGTTCTGCTTCCT+CGG | - | tig0025581:20952-20971 | None:intergenic | 50.0% |
| TCATGAAGAAGGAGTTCCGC+AGG | + | tig0025581:20992-21011 | Msa1423850:CDS | 50.0% | |
| GGCAAAGGCCGTTCAAAATC+AGG | + | tig0025581:21017-21036 | Msa1423850:CDS | 50.0% | |
| GTGTTCCCTTGAAAAGGACC+TGG | + | tig0025581:21241-21260 | Msa1423850:intron | 50.0% | |
| ! | AGCAAGGGCTAGCATAGACT+AGG | - | tig0025581:21318-21337 | None:intergenic | 50.0% |
| CTACAGGCCTGATCTGAAGA+AGG | + | tig0025581:21858-21877 | Msa1423850:CDS | 50.0% | |
| AGAGCTGCCTTCTTCAGATC+AGG | - | tig0025581:21868-21887 | None:intergenic | 50.0% | |
| TGAAGAAGGCAGCTCTTGCA+AGG | + | tig0025581:21872-21891 | Msa1423850:CDS | 50.0% | |
| AGCCTCAAAGTTGCCAAGTC+CGG | + | tig0025581:21913-21932 | Msa1423850:CDS | 50.0% | |
| AGTACCAGGGCCACTCATAT+GGG | + | tig0025581:19926-19945 | Msa1423850:CDS | 50.0% | |
| GCCTGCTGGTAAAGATCAGT+CGG | + | tig0025581:20906-20925 | Msa1423850:CDS | 50.0% | |
| ACCGACTGATCTTTACCAGC+AGG | - | tig0025581:20910-20929 | None:intergenic | 50.0% | |
| ! | TGTTGGCTACAACTAAGCCG+AGG | + | tig0025581:20932-20951 | Msa1423850:CDS | 50.0% |
| ! | GAAGGCTTGTTCTGCTTCCT+CGG | - | tig0025581:20952-20971 | None:intergenic | 50.0% |
| TCATGAAGAAGGAGTTCCGC+AGG | + | tig0025581:20992-21011 | Msa1423850:CDS | 50.0% | |
| GGCAAAGGCCGTTCAAAATC+AGG | + | tig0025581:21017-21036 | Msa1423850:CDS | 50.0% | |
| GTGTTCCCTTGAAAAGGACC+TGG | + | tig0025581:21241-21260 | Msa1423850:intron | 50.0% | |
| ! | AGCAAGGGCTAGCATAGACT+AGG | - | tig0025581:21318-21337 | None:intergenic | 50.0% |
| CTACAGGCCTGATCTGAAGA+AGG | + | tig0025581:21858-21877 | Msa1423850:CDS | 50.0% | |
| AGAGCTGCCTTCTTCAGATC+AGG | - | tig0025581:21868-21887 | None:intergenic | 50.0% | |
| TGAAGAAGGCAGCTCTTGCA+AGG | + | tig0025581:21872-21891 | Msa1423850:CDS | 50.0% | |
| AGCCTCAAAGTTGCCAAGTC+CGG | + | tig0025581:21913-21932 | Msa1423850:CDS | 50.0% | |
| CAGTACCAGGGCCACTCATA+TGG | + | tig0025581:19925-19944 | Msa1423850:CDS | 55.0% | |
| ATCTCCCATATGAGTGGCCC+TGG | - | tig0025581:19933-19952 | None:intergenic | 55.0% | |
| ACTGTGACCATTCAGCCTGC+TGG | + | tig0025581:20892-20911 | Msa1423850:CDS | 55.0% | |
| GAAGAAGGAGTTCCGCAGGA+TGG | + | tig0025581:20996-21015 | Msa1423850:CDS | 55.0% | |
| CACCGGACTTGGCAACTTTG+AGG | - | tig0025581:21918-21937 | None:intergenic | 55.0% | |
| CCTCTTCTTGACACCGGACT+TGG | - | tig0025581:21929-21948 | None:intergenic | 55.0% | |
| ! | CCAAGTCCGGTGTCAAGAAG+AGG | + | tig0025581:21926-21945 | Msa1423850:CDS | 55.0% |
| CAGTACCAGGGCCACTCATA+TGG | + | tig0025581:19925-19944 | Msa1423850:CDS | 55.0% | |
| ATCTCCCATATGAGTGGCCC+TGG | - | tig0025581:19933-19952 | None:intergenic | 55.0% | |
| ACTGTGACCATTCAGCCTGC+TGG | + | tig0025581:20892-20911 | Msa1423850:CDS | 55.0% | |
| GAAGAAGGAGTTCCGCAGGA+TGG | + | tig0025581:20996-21015 | Msa1423850:CDS | 55.0% | |
| CACCGGACTTGGCAACTTTG+AGG | - | tig0025581:21918-21937 | None:intergenic | 55.0% | |
| CCTCTTCTTGACACCGGACT+TGG | - | tig0025581:21929-21948 | None:intergenic | 55.0% | |
| ! | CCAAGTCCGGTGTCAAGAAG+AGG | + | tig0025581:21926-21945 | Msa1423850:CDS | 55.0% |
| GGAGTTCCGCAGGATGGCAA+AGG | + | tig0025581:21002-21021 | Msa1423850:CDS | 60.0% | |
| GAACGGCCTTTGCCATCCTG+CGG | - | tig0025581:21011-21030 | None:intergenic | 60.0% | |
| GGAGTTCCGCAGGATGGCAA+AGG | + | tig0025581:21002-21021 | Msa1423850:CDS | 60.0% | |
| GAACGGCCTTTGCCATCCTG+CGG | - | tig0025581:21011-21030 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0025581 | gene | 19869 | 22239 | 19869 | ID=Msa1423850;Name=Msa1423850 |
| tig0025581 | mRNA | 19869 | 22239 | 19869 | ID=Msa1423850-mRNA-1;Parent=Msa1423850;Name=Msa1423850-mRNA-1;_AED=0.02;_eAED=0.02;_QI=49|1|1|1|1|1|3|276|143 |
| tig0025581 | exon | 19869 | 20065 | 19869 | ID=Msa1423850-mRNA-1:exon:3436;Parent=Msa1423850-mRNA-1 |
| tig0025581 | exon | 20875 | 21038 | 20875 | ID=Msa1423850-mRNA-1:exon:3437;Parent=Msa1423850-mRNA-1 |
| tig0025581 | exon | 21844 | 22239 | 21844 | ID=Msa1423850-mRNA-1:exon:3438;Parent=Msa1423850-mRNA-1 |
| tig0025581 | five_prime_UTR | 19869 | 19917 | 19869 | ID=Msa1423850-mRNA-1:five_prime_utr;Parent=Msa1423850-mRNA-1 |
| tig0025581 | CDS | 19918 | 20065 | 19918 | ID=Msa1423850-mRNA-1:cds;Parent=Msa1423850-mRNA-1 |
| tig0025581 | CDS | 20875 | 21038 | 20875 | ID=Msa1423850-mRNA-1:cds;Parent=Msa1423850-mRNA-1 |
| tig0025581 | CDS | 21844 | 21963 | 21844 | ID=Msa1423850-mRNA-1:cds;Parent=Msa1423850-mRNA-1 |
| tig0025581 | three_prime_UTR | 21964 | 22239 | 21964 | ID=Msa1423850-mRNA-1:three_prime_utr;Parent=Msa1423850-mRNA-1 |
| Gene Sequence |
| Protein sequence |
