AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1426560

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1426560 MtrunA17_Chr7g0275731 91.392 395 6 1 35 401 91 485 0.0 726
Msa1426560 MtrunA17_Chr1g0210201 53.766 385 140 7 44 400 93 467 7.80e-123 363
Msa1426560 MtrunA17_Chr1g0212321 46.923 390 171 6 41 400 103 486 9.14e-117 348
Msa1426560 MtrunA17_Chr1g0165201 45.098 408 187 8 28 400 64 469 5.65e-103 313
Msa1426560 MtrunA17_Chr6g0484901 47.002 417 166 11 29 400 85 491 1.61e-102 312
Msa1426560 MtrunA17_Chr3g0130931 36.768 427 219 12 10 400 37 448 7.35e-74 237
Msa1426560 MtrunA17_Chr3g0099891 37.678 422 213 12 14 401 50 455 9.47e-74 237
Msa1426560 MtrunA17_Chr2g0291201 33.485 439 228 13 14 401 27 452 2.45e-71 231
Msa1426560 MtrunA17_Chr8g0390761 35.772 369 201 9 56 393 85 448 2.86e-71 230
Msa1426560 MtrunA17_Chr3g0095891 34.272 426 229 9 26 401 35 459 4.59e-69 225
Msa1426560 MtrunA17_Chr4g0001991 34.752 423 238 9 14 400 97 517 5.72e-67 221
Msa1426560 MtrunA17_Chr5g0442921 37.500 376 186 7 73 400 179 553 5.82e-67 222
Msa1426560 MtrunA17_Chr5g0435871 37.465 355 176 13 84 400 88 434 4.15e-64 211
Msa1426560 MtrunA17_Chr3g0099901 40.782 358 174 11 77 401 134 486 6.56e-63 209
Msa1426560 MtrunA17_Chr5g0435971 37.465 355 176 13 84 400 85 431 1.50e-62 207
Msa1426560 MtrunA17_Chr5g0419291 35.530 349 188 10 84 400 85 428 2.08e-62 207
Msa1426560 MtrunA17_Chr8g0352661 35.027 374 202 11 65 400 66 436 2.56e-59 199
Msa1426560 MtrunA17_Chr8g0352671 35.754 358 180 14 84 400 88 436 2.73e-59 199
Msa1426560 MtrunA17_Chr2g0310821 36.522 345 182 13 84 400 107 442 2.19e-58 196
Msa1426560 MtrunA17_Chr8g0386441 34.324 370 203 12 65 400 66 429 2.29e-58 196
Msa1426560 MtrunA17_Chr5g0415951 35.359 362 194 15 74 400 78 434 5.67e-58 195
Msa1426560 MtrunA17_Chr2g0307991 36.164 365 189 11 73 400 47 404 1.47e-57 193
Msa1426560 MtrunA17_Chr3g0087851 33.711 353 190 12 86 400 90 436 5.46e-55 187
Msa1426560 MtrunA17_Chr2g0310801 35.393 356 180 14 84 400 89 433 6.50e-55 187
Msa1426560 MtrunA17_Chr6g0457401 34.758 351 187 12 86 400 92 436 2.72e-54 186
Msa1426560 MtrunA17_Chr2g0333991 31.579 399 204 17 45 397 57 432 7.65e-54 184
Msa1426560 MtrunA17_Chr6g0487471 35.484 372 201 9 65 400 66 434 1.47e-53 184
Msa1426560 MtrunA17_Chr2g0311451 31.920 401 206 18 45 400 57 435 7.90e-52 179
Msa1426560 MtrunA17_Chr6g0486981 32.337 368 196 13 76 400 79 436 1.64e-51 178
Msa1426560 MtrunA17_Chr2g0308001 35.211 355 187 11 85 400 58 408 1.66e-51 178
Msa1426560 MtrunA17_Chr2g0310831 32.134 417 227 18 28 400 36 440 2.58e-51 178
Msa1426560 MtrunA17_Chr5g0395911 33.081 396 223 15 40 400 25 413 1.52e-50 175
Msa1426560 MtrunA17_Chr4g0061641 35.821 335 172 13 101 400 70 396 1.48e-48 169
Msa1426560 MtrunA17_Chr5g0395931 30.749 387 228 14 50 400 53 435 6.32e-46 163
Msa1426560 MtrunA17_Chr5g0395871 30.500 400 233 13 34 400 37 424 2.90e-45 161
Msa1426560 MtrunA17_Chr1g0164401 31.519 349 198 7 83 400 90 428 6.62e-40 147
Msa1426560 MtrunA17_Chr4g0023351 37.788 217 117 7 61 260 32 247 3.22e-35 131
Msa1426560 MtrunA17_Chr7g0267171 29.167 408 207 16 65 401 70 466 1.84e-34 133
Msa1426560 MtrunA17_Chr2g0309561 27.857 420 222 16 60 401 93 509 2.20e-34 133
Msa1426560 MtrunA17_Chr2g0307461 29.459 370 196 14 86 400 71 430 3.59e-34 131
Msa1426560 MtrunA17_Chr8g0353261 29.798 396 218 15 43 400 60 433 4.42e-34 131
Msa1426560 MtrunA17_Chr3g0133071 30.521 403 231 12 36 401 48 438 1.00e-33 130
Msa1426560 MtrunA17_Chr5g0434411 28.333 360 197 14 92 400 88 437 1.24e-30 122
Msa1426560 MtrunA17_Chr3g0110191 29.315 365 189 17 89 400 90 438 1.54e-30 121
Msa1426560 MtrunA17_Chr3g0112051 29.121 364 175 15 90 401 78 410 5.31e-30 120
Msa1426560 MtrunA17_Chr5g0399171 27.561 410 200 20 79 400 69 469 5.34e-29 117
Msa1426560 MtrunA17_Chr5g0419151 34.615 260 138 12 171 400 110 367 6.41e-29 115
Msa1426560 MtrunA17_Chr7g0265331 26.374 364 218 12 84 400 80 440 1.94e-28 116
Msa1426560 MtrunA17_Chr7g0249451 26.247 381 211 15 77 400 63 430 2.61e-28 115
Msa1426560 MtrunA17_Chr4g0056211 27.873 409 201 20 79 400 69 470 5.86e-28 115
Msa1426560 MtrunA17_Chr6g0484731 26.933 375 218 16 76 400 182 550 1.50e-27 114
Msa1426560 MtrunA17_Chr8g0384731 26.434 401 244 16 46 401 31 425 6.00e-27 111
Msa1426560 MtrunA17_Chr2g0312941 27.467 375 207 14 83 399 85 452 8.37e-27 111
Msa1426560 MtrunA17_Chr1g0179091 28.490 351 187 14 82 400 48 366 1.54e-26 109
Msa1426560 MtrunA17_Chr5g0401601 25.833 360 218 12 83 400 86 438 2.51e-26 111
Msa1426560 MtrunA17_Chr3g0130741 27.298 359 214 15 84 401 83 435 3.29e-26 109
Msa1426560 MtrunA17_Chr7g0239001 28.342 374 195 18 90 401 64 426 5.88e-26 108
Msa1426560 MtrunA17_Chr8g0371371 25.770 357 213 16 86 400 113 459 1.56e-25 108
Msa1426560 MtrunA17_Chr5g0434441 30.579 363 187 15 92 400 75 426 3.47e-25 106
Msa1426560 MtrunA17_Chr1g0179751 26.273 373 213 12 82 400 105 469 4.79e-25 107
Msa1426560 MtrunA17_Chr4g0053721 26.316 361 215 14 83 400 78 430 5.55e-25 107
Msa1426560 MtrunA17_Chr5g0395891 31.333 300 158 15 141 400 21 312 1.82e-24 102
Msa1426560 MtrunA17_Chr1g0189381 24.731 372 229 13 77 400 61 429 6.67e-24 103
Msa1426560 MtrunA17_Chr8g0352691 31.061 264 144 11 169 400 2 259 8.58e-24 99.8
Msa1426560 MtrunA17_Chr7g0221681 25.676 370 215 16 84 400 71 433 9.20e-24 102
Msa1426560 MtrunA17_Chr4g0027681 25.624 441 241 17 20 401 25 437 1.48e-23 102
Msa1426560 MtrunA17_Chr5g0406001 26.446 363 205 18 86 400 113 461 3.23e-23 101
Msa1426560 MtrunA17_Chr3g0082281 30.986 284 158 6 148 400 43 319 6.30e-23 98.2
Msa1426560 MtrunA17_Chr2g0320621 26.620 432 246 17 20 400 26 437 2.01e-22 99.0
Msa1426560 MtrunA17_Chr8g0352681 41.414 99 57 1 65 163 67 164 2.24e-22 93.2
Msa1426560 MtrunA17_Chr1g0159791 26.944 360 216 16 84 401 56 410 2.37e-21 95.1
Msa1426560 MtrunA17_Chr3g0124421 25.627 359 217 15 86 401 100 451 1.47e-18 87.4
Msa1426560 MtrunA17_Chr4g0010951 26.667 330 171 16 56 341 29 331 4.52e-16 79.7
Msa1426560 MtrunA17_Chr8g0371351 24.931 361 213 16 86 400 101 449 5.70e-16 79.7
Msa1426560 MtrunA17_Chr5g0425141 26.050 357 215 16 86 401 102 450 2.19e-14 74.7
Msa1426560 MtrunA17_Chr5g0435541 31.159 138 80 6 279 401 1 138 4.24e-12 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1426560 AT1G01300.1 73.500 400 71 3 35 400 86 484 0.0 554
Msa1426560 AT3G61820.1 64.286 406 104 6 36 400 78 483 2.34e-166 475
Msa1426560 AT1G25510.1 49.246 398 155 8 44 400 92 483 7.71e-112 336
Msa1426560 AT3G20015.1 46.402 403 180 7 31 400 71 470 1.48e-109 330
Msa1426560 AT3G18490.1 47.761 402 159 10 44 400 105 500 3.41e-109 330
Msa1426560 AT5G10770.1 38.015 413 213 12 28 401 66 474 1.39e-76 245
Msa1426560 AT2G03200.1 35.556 360 187 8 82 400 103 458 8.49e-70 227
Msa1426560 AT5G10760.1 37.019 416 226 12 11 400 59 464 7.60e-69 225
Msa1426560 AT3G59080.1 33.860 443 231 11 9 400 101 532 6.15e-62 208
Msa1426560 AT2G42980.1 32.762 467 231 15 11 400 64 524 3.45e-61 206
Msa1426560 AT5G33340.1 33.747 403 214 11 36 400 47 434 2.25e-60 202
Msa1426560 AT3G25700.1 34.908 381 193 14 73 400 71 449 6.46e-58 196
Msa1426560 AT1G64830.1 32.840 405 225 10 34 400 33 428 2.70e-56 191
Msa1426560 AT1G79720.1 32.746 397 224 10 40 400 93 482 5.83e-56 191
Msa1426560 AT3G59080.2 32.346 439 207 11 9 400 101 496 2.36e-52 182
Msa1426560 AT2G35615.1 32.629 426 220 13 28 400 32 443 3.26e-52 181
Msa1426560 AT1G31450.1 32.976 373 202 10 73 400 72 441 2.55e-51 178
Msa1426560 AT3G54400.1 32.764 351 192 9 83 400 85 424 2.18e-47 167
Msa1426560 AT1G09750.1 32.143 364 203 11 75 401 93 449 4.22e-45 162
Msa1426560 AT2G28040.2 30.460 348 189 10 85 400 55 381 3.45e-41 150
Msa1426560 AT2G28040.1 30.460 348 189 10 85 400 64 390 4.98e-41 149
Msa1426560 AT3G12700.1 32.021 381 215 12 62 400 82 460 8.59e-40 147
Msa1426560 AT2G28010.1 29.855 345 194 11 86 400 65 391 5.07e-39 144
Msa1426560 AT4G30030.1 30.398 352 200 16 86 401 78 420 4.42e-38 142
Msa1426560 AT2G28030.1 30.145 345 193 11 86 400 61 387 1.08e-36 138
Msa1426560 AT4G30040.1 27.119 413 235 15 28 395 36 427 2.40e-36 137
Msa1426560 AT2G28220.1 29.799 349 193 11 86 400 67 397 2.73e-36 137
Msa1426560 AT5G02190.1 31.467 375 176 19 95 401 82 443 3.56e-36 137
Msa1426560 AT2G39710.1 29.348 368 189 13 90 396 69 426 9.53e-36 136
Msa1426560 AT2G28225.1 28.940 349 196 12 86 400 67 397 1.23e-34 132
Msa1426560 AT5G37540.1 29.950 404 211 19 54 400 50 438 4.37e-33 129
Msa1426560 AT1G66180.1 30.579 363 188 18 90 400 76 426 9.09e-33 128
Msa1426560 AT3G52500.1 28.788 462 235 20 20 400 19 467 4.69e-32 126
Msa1426560 AT5G07030.1 30.056 356 200 12 83 401 112 455 8.76e-32 125
Msa1426560 AT5G43100.2 28.125 352 212 12 83 400 73 417 1.02e-31 125
Msa1426560 AT5G43100.1 28.125 352 212 12 83 400 73 417 1.61e-31 126
Msa1426560 AT5G36260.1 27.348 362 214 14 84 400 76 433 1.03e-29 120
Msa1426560 AT4G33490.2 30.518 367 194 20 84 401 58 412 2.43e-29 118
Msa1426560 AT3G25700.2 29.254 335 172 13 73 400 71 347 1.17e-28 115
Msa1426560 AT2G23945.1 26.196 439 256 21 8 393 18 441 5.99e-28 115
Msa1426560 AT4G12920.1 26.503 366 231 12 65 401 32 388 4.18e-27 111
Msa1426560 AT5G45120.1 26.500 400 205 16 86 400 83 478 3.84e-26 110
Msa1426560 AT5G22850.1 26.849 365 216 11 84 400 79 440 2.89e-25 107
Msa1426560 AT2G36670.2 26.997 363 216 12 84 400 98 457 4.43e-25 107
Msa1426560 AT2G36670.1 26.870 361 215 12 86 400 105 462 1.17e-24 106
Msa1426560 AT3G02740.1 26.087 414 243 18 40 400 36 439 1.33e-24 105
Msa1426560 AT2G36670.4 27.348 362 214 14 86 401 34 392 1.70e-24 105
Msa1426560 AT2G36670.3 27.348 362 214 14 86 401 34 392 1.70e-24 105
Msa1426560 AT2G17760.1 27.606 355 208 16 86 400 104 449 2.22e-24 105
Msa1426560 AT4G33490.1 30.882 340 177 19 84 377 55 382 1.06e-23 102
Msa1426560 AT3G02740.2 25.824 364 212 15 86 400 10 364 1.29e-23 102
Msa1426560 AT3G50050.1 25.290 431 259 16 20 400 19 436 2.74e-23 102
Msa1426560 AT1G65240.1 24.581 358 226 12 84 400 72 426 2.55e-22 99.0
Msa1426560 AT4G16563.1 29.648 398 174 18 103 400 100 491 1.97e-21 96.7
Msa1426560 AT1G05840.1 24.324 370 218 14 84 400 78 438 9.87e-21 94.4
Msa1426560 AT3G42550.1 26.923 338 204 14 83 400 75 389 6.27e-19 88.6
Msa1426560 AT5G10080.1 25.676 370 206 15 86 401 100 454 7.35e-19 89.0
Msa1426560 AT3G51360.1 25.562 356 217 15 86 401 89 436 7.68e-19 88.6
Msa1426560 AT3G51360.9 25.562 356 217 15 86 401 99 446 8.17e-19 88.6
Msa1426560 AT1G08210.3 26.722 363 216 13 84 400 130 488 9.00e-19 88.6
Msa1426560 AT1G08210.1 26.722 363 216 13 84 400 82 440 9.44e-19 88.6
Msa1426560 AT3G51360.7 25.562 356 217 15 86 401 5 352 1.03e-18 87.8
Msa1426560 AT1G08210.4 26.722 363 216 13 84 400 116 474 1.21e-18 88.2
Msa1426560 AT3G51340.2 24.716 352 221 15 86 400 103 447 1.38e-18 88.2
Msa1426560 AT3G51330.3 25.571 438 262 21 10 401 35 454 1.45e-18 87.8
Msa1426560 AT3G51330.1 25.629 437 261 21 10 400 35 453 2.18e-18 87.4
Msa1426560 AT3G51350.1 24.011 354 227 11 86 400 102 452 3.73e-18 86.7
Msa1426560 AT4G35880.1 24.927 341 208 14 86 387 107 438 5.04e-18 86.3
Msa1426560 AT3G51360.6 27.027 333 189 17 86 375 99 420 1.95e-16 81.3
Msa1426560 AT3G51360.4 26.460 291 170 13 86 340 89 371 2.04e-16 80.9
Msa1426560 AT3G51360.10 27.027 333 189 17 86 375 89 410 2.30e-16 80.9
Msa1426560 AT3G51360.5 26.460 291 170 13 86 340 99 381 2.68e-16 80.5
Msa1426560 AT3G51340.3 25.424 295 180 12 86 345 103 392 1.40e-15 78.2
Msa1426560 AT3G51330.2 25.971 412 241 21 10 375 35 428 1.65e-15 78.6
Msa1426560 AT4G35880.2 24.620 329 200 14 86 375 107 426 1.82e-15 78.2
Msa1426560 AT3G51340.1 24.451 364 219 17 86 400 103 459 2.65e-15 78.2
Msa1426560 AT1G08210.2 26.154 325 193 11 84 364 82 403 1.37e-14 75.9
Msa1426560 AT3G51340.4 25.641 273 165 11 86 323 103 372 2.32e-14 74.7
Msa1426560 AT3G51360.2 25.407 307 181 12 30 303 51 342 3.05e-14 73.9

Find 107 sgRNAs with CRISPR-Local

Find 288 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGGGAGAGTGATTCTTCTTT+TGG 0.170893 tig0026054:-1851 None:intergenic
CGCGTGGCGCGTGTGGCTTT+AGG 0.227012 tig0026054:+2366 Msa1426560:CDS
TATTCAGCAGCAAGGGTTTC+GGG 0.242630 tig0026054:+3015 Msa1426560:CDS
GATAAAGATTCTTCTGATTC+TGG 0.246841 tig0026054:-1809 None:intergenic
GTTGGTGCTGCTGGTTTATT+AGG 0.281772 tig0026054:+2417 Msa1426560:CDS
TGAAGCCAGTAGCGGATCTA+TGG 0.300042 tig0026054:-1996 None:intergenic
CTGCTTGCGAATAACATTTC+CGG 0.301592 tig0026054:-2155 None:intergenic
GATACTTGCTTTGATTTATC+TGG 0.322152 tig0026054:+2839 Msa1426560:CDS
TTGCACTGAGAGATGCATTT+AGG 0.324139 tig0026054:+2771 Msa1426560:CDS
GGCGGAGTTATCATTGATTC+AGG 0.331058 tig0026054:+2713 Msa1426560:CDS
TGACTCTGGCAGCATCTCTT+TGG 0.333372 tig0026054:-1939 None:intergenic
ATATTCAGCAGCAAGGGTTT+CGG 0.334919 tig0026054:+3014 Msa1426560:CDS
TAATCTCATTCACACCCTTT+TGG 0.336138 tig0026054:-3076 None:intergenic
GATTGAACCGGCGACCGGTT+TGG 0.338038 tig0026054:-2470 None:intergenic
GGCACAGAATTACTTGATTC+CGG 0.349446 tig0026054:+2925 Msa1426560:CDS
GGCGATGGGTCTTTCACTTT+CGG 0.355522 tig0026054:+2306 Msa1426560:CDS
AATGATAACTCCGCCGTTTC+CGG 0.356163 tig0026054:-2705 None:intergenic
CATGCGGTGCTCCTCTTTGC+CGG 0.374955 tig0026054:+2223 Msa1426560:CDS
TTGAGAAAGTCCGGAGACTA+TGG 0.378424 tig0026054:-2025 None:intergenic
CGTAGGAACGTGACTTTGTT+GGG 0.396292 tig0026054:-2191 None:intergenic
ATCTTGCGAGCTCGCGGGTC+GGG 0.397716 tig0026054:+3047 Msa1426560:CDS
TAGCCACACCACGTCACTTC+CGG 0.407176 tig0026054:-2118 None:intergenic
AGGTGCTGATGTGTCCCTTC+CGG 0.412328 tig0026054:+2904 Msa1426560:CDS
AAGAGAATTTCTGATTGAAC+CGG 0.429358 tig0026054:-2482 None:intergenic
ATGTTATTCGCAAGCAGATC+CGG 0.430664 tig0026054:+2161 Msa1426560:CDS
ATGAGTGGTTTGTCCATCAT+TGG 0.431680 tig0026054:+2989 Msa1426560:CDS
GCTGCTGGTTTATTAGGTCT+TGG 0.436699 tig0026054:+2423 Msa1426560:CDS
CGGGTCGGGTTTGCACCAAA+AGG 0.439668 tig0026054:+3061 Msa1426560:CDS
TATTTCACTCGCATCGGTGT+TGG 0.439801 tig0026054:+2060 Msa1426560:CDS
TGTCAGTATCAAGTTTCTTA+CGG 0.448845 tig0026054:+2285 Msa1426560:CDS
TGTAAGCAGGTCGAGTCAAT+CGG 0.453067 tig0026054:-2748 None:intergenic
GAAATTCTCTTATTGTCTTG+TGG 0.459018 tig0026054:+2494 Msa1426560:CDS
CTGCTGAATATTACCAATGA+TGG 0.459225 tig0026054:-3002 None:intergenic
GCGTAGGAACGTGACTTTGT+TGG 0.461415 tig0026054:-2192 None:intergenic
TGGGTCTTCGGATTCGGGTA+TGG 0.461666 tig0026054:-1831 None:intergenic
TTCCGGTCCAAACCGGTCGC+CGG 0.464037 tig0026054:+2463 Msa1426560:CDS
TGCCGGCGACTCGACACTGC+TGG 0.466483 tig0026054:+2240 Msa1426560:CDS
TCTCTTATTGTCTTGTGGAC+CGG 0.472788 tig0026054:+2499 Msa1426560:CDS
AACCGGCGACCGGTTTGGAC+CGG 0.474663 tig0026054:-2465 None:intergenic
AAACTCGACACCGCCGGAAA+CGG 0.478325 tig0026054:+2692 Msa1426560:CDS
TCGGCTGTTTCTCGAACGCC+CGG 0.478688 tig0026054:+2561 Msa1426560:CDS
AGTTTCTGCTTTGCTTTCGC+CGG 0.481212 tig0026054:+2962 Msa1426560:CDS
GGACAAACCACTCATCGTTC+CGG 0.488760 tig0026054:-2981 None:intergenic
TTTCTGATTGAACCGGCGAC+CGG 0.493839 tig0026054:-2475 None:intergenic
GCCGCTGCCTTGAGAAAGTC+CGG 0.495381 tig0026054:-2034 None:intergenic
GAAGCCAGTAGCGGATCTAT+GGG 0.498743 tig0026054:-1995 None:intergenic
ATCAAGTTTCTTACGGCGAT+GGG 0.503051 tig0026054:+2292 Msa1426560:CDS
AAAGACGCGCGTGGCGCGTG+TGG 0.510956 tig0026054:+2359 Msa1426560:CDS
TATCAAGTTTCTTACGGCGA+TGG 0.511342 tig0026054:+2291 Msa1426560:CDS
CATCTCTTTGGAGTCTGAGA+TGG 0.515518 tig0026054:-1927 None:intergenic
AACCAGCAGTGTCGAGTCGC+CGG 0.516796 tig0026054:-2242 None:intergenic
CTGAGAGATGCATTTAGGCT+TGG 0.527744 tig0026054:+2776 Msa1426560:CDS
ATACTGACAAACCTTGCTCT+TGG 0.528974 tig0026054:-2271 None:intergenic
CTCTTCAAACTCGACACCGC+CGG 0.530466 tig0026054:+2686 Msa1426560:CDS
TGGTGCTACGCATCTGAAGA+AGG 0.532453 tig0026054:+2796 Msa1426560:CDS
TTCAGCAGCTCCATAGTCTC+CGG 0.534475 tig0026054:+2015 Msa1426560:CDS
GCTTTCGCCGGAACGATGAG+TGG 0.540100 tig0026054:+2974 Msa1426560:CDS
GGCAAAGAGGAGCACCGCAT+GGG 0.541095 tig0026054:-2221 None:intergenic
TCTCTCAGTGCAATGTAAGC+AGG 0.541916 tig0026054:-2761 None:intergenic
GCGCGTGTGGCTTTAGGGTG+TGG 0.542668 tig0026054:+2372 Msa1426560:CDS
CTCGACACCGCCGGAAACGG+CGG 0.545168 tig0026054:+2695 Msa1426560:CDS
GATCTTGCGAGCTCGCGGGT+CGG 0.545739 tig0026054:+3046 Msa1426560:CDS
CGGCAAAGAGGAGCACCGCA+TGG 0.553154 tig0026054:-2222 None:intergenic
ACCATGAAAACATACCTAGC+TGG 0.553972 tig0026054:-2087 None:intergenic
ATCTGGTCTGACGGAAGTGA+AGG 0.555136 tig0026054:+2856 Msa1426560:CDS
GTAAGCAGGTCGAGTCAATC+GGG 0.555188 tig0026054:-2747 None:intergenic
TGTTGCGAAGGATTTGACTC+TGG 0.555494 tig0026054:-1953 None:intergenic
TGCGAATAACATTTCCGGCA+TGG 0.557017 tig0026054:-2150 None:intergenic
CTTTGATTTATCTGGTCTGA+CGG 0.557950 tig0026054:+2847 Msa1426560:CDS
GGCTACAATGTGCGCCATGC+CGG 0.558061 tig0026054:+2136 Msa1426560:CDS
GGGTCGGGTTTGCACCAAAA+GGG 0.558186 tig0026054:+3062 Msa1426560:CDS
TTGGTAATATTCAGCAGCAA+GGG 0.558689 tig0026054:+3008 Msa1426560:CDS
GGAATCAAGTAATTCTGTGC+CGG 0.577242 tig0026054:-2923 None:intergenic
ATTGGTAATATTCAGCAGCA+AGG 0.580766 tig0026054:+3007 Msa1426560:CDS
GTGTCGAGTCGCCGGCAAAG+AGG 0.582989 tig0026054:-2234 None:intergenic
TCGGAACGTGAGTGTTTCAG+TGG 0.583381 tig0026054:-2337 None:intergenic
GGTTTATTAGGTCTTGGTCG+TGG 0.585085 tig0026054:+2429 Msa1426560:CDS
TTATGATCTTGCGAGCTCGC+GGG 0.587097 tig0026054:+3042 Msa1426560:CDS
TTTGTTGAGAGCTGTTGCGA+AGG 0.589319 tig0026054:-1965 None:intergenic
TCAAGTAATTCTGTGCCGGA+AGG 0.590991 tig0026054:-2919 None:intergenic
GGCGAATATTTCACTCGCAT+CGG 0.593521 tig0026054:+2054 Msa1426560:CDS
ATAGTCTCCGGACTTTCTCA+AGG 0.594667 tig0026054:+2027 Msa1426560:CDS
TGAAAATGAAGCACTAATGT+CGG 0.602965 tig0026054:-2881 None:intergenic
GTTATGATCTTGCGAGCTCG+CGG 0.603166 tig0026054:+3041 Msa1426560:CDS
ACAAAGTCACGTTCCTACGC+CGG 0.611027 tig0026054:+2195 Msa1426560:CDS
AAACTCCCACTGTTGTCCAC+CGG 0.611488 tig0026054:-2944 None:intergenic
TGGTTGCAACACCAAGAGCA+AGG 0.613988 tig0026054:+2260 Msa1426560:CDS
TCCGGACTTTCTCAAGGCAG+CGG 0.615778 tig0026054:+2033 Msa1426560:CDS
GATAACTCCGCCGTTTCCGG+CGG 0.625472 tig0026054:-2702 None:intergenic
TTGATTCCGGTGGACAACAG+TGG 0.625730 tig0026054:+2938 Msa1426560:CDS
TACGCATCTGAAGAAGGCGC+CGG 0.628413 tig0026054:+2802 Msa1426560:CDS
TCGGTGTTGGAACTCCAGCT+AGG 0.629179 tig0026054:+2073 Msa1426560:CDS
ACACCGGAAGTGACGTGGTG+TGG 0.630163 tig0026054:+2115 Msa1426560:CDS
GTCTATGTGGTGTAGCTGAA+GGG 0.633304 tig0026054:-1870 None:intergenic
TGATTCCGGTGGACAACAGT+GGG 0.634457 tig0026054:+2939 Msa1426560:CDS
GTATCGAACAACGAAAACTC+CGG 0.636421 tig0026054:-2821 None:intergenic
CAAGTAATTCTGTGCCGGAA+GGG 0.643698 tig0026054:-2918 None:intergenic
TGTCTATGTGGTGTAGCTGA+AGG 0.647590 tig0026054:-1871 None:intergenic
TCTCGACACCGGAAGTGACG+TGG 0.648988 tig0026054:+2110 Msa1426560:CDS
GGAGCTGCTGAAGCCAGTAG+CGG 0.671965 tig0026054:-2004 None:intergenic
ACAGAATTACTTGATTCCGG+TGG 0.679406 tig0026054:+2928 Msa1426560:CDS
GGTGTCGAGTTTGAAGAGCG+AGG 0.684854 tig0026054:-2681 None:intergenic
CGGAGGAGAGAGTGTCTATG+TGG 0.693842 tig0026054:-1883 None:intergenic
TCCTACGCCGGAATCCCATG+CGG 0.708485 tig0026054:+2207 Msa1426560:CDS
AAGCCAGTAGCGGATCTATG+GGG 0.720794 tig0026054:-1994 None:intergenic
GGGTGTGGACATGATAACGA+AGG 0.721683 tig0026054:+2387 Msa1426560:CDS
GTCGAGTTTGAAGAGCGAGG+CGG 0.728421 tig0026054:-2678 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAATAGAAAGTATCGAGTTT+AGG - tig0026054:2608-2627 None:intergenic 25.0%
!!! TAATAGAAAGTATCGAGTTT+AGG - tig0026054:2608-2627 None:intergenic 25.0%
GATAAAGATTCTTCTGATTC+TGG - tig0026054:1812-1831 None:intergenic 30.0%
TGTCAGTATCAAGTTTCTTA+CGG + tig0026054:2285-2304 Msa1426560:CDS 30.0%
AAGAGAATTTCTGATTGAAC+CGG - tig0026054:2485-2504 None:intergenic 30.0%
GAAATTCTCTTATTGTCTTG+TGG + tig0026054:2494-2513 Msa1426560:CDS 30.0%
!! AGTTTAGGATTTTTGAGAAG+TGG - tig0026054:2593-2612 None:intergenic 30.0%
! GATACTTGCTTTGATTTATC+TGG + tig0026054:2839-2858 Msa1426560:CDS 30.0%
! TGAAAATGAAGCACTAATGT+CGG - tig0026054:2884-2903 None:intergenic 30.0%
! ACATTAGTGCTTCATTTTCA+AGG + tig0026054:2884-2903 Msa1426560:CDS 30.0%
GATAAAGATTCTTCTGATTC+TGG - tig0026054:1812-1831 None:intergenic 30.0%
TGTCAGTATCAAGTTTCTTA+CGG + tig0026054:2285-2304 Msa1426560:CDS 30.0%
AAGAGAATTTCTGATTGAAC+CGG - tig0026054:2485-2504 None:intergenic 30.0%
GAAATTCTCTTATTGTCTTG+TGG + tig0026054:2494-2513 Msa1426560:CDS 30.0%
!! AGTTTAGGATTTTTGAGAAG+TGG - tig0026054:2593-2612 None:intergenic 30.0%
! GATACTTGCTTTGATTTATC+TGG + tig0026054:2839-2858 Msa1426560:CDS 30.0%
! TGAAAATGAAGCACTAATGT+CGG - tig0026054:2884-2903 None:intergenic 30.0%
! ACATTAGTGCTTCATTTTCA+AGG + tig0026054:2884-2903 Msa1426560:CDS 30.0%
!! TGATTCTTCTTTTGGGTCTT+CGG - tig0026054:1846-1865 None:intergenic 35.0%
!! AGAGTTTTTGTGGGTTTTGT+CGG - tig0026054:1906-1925 None:intergenic 35.0%
! TGAGATGGAAGAGTTTTTGT+GGG - tig0026054:1915-1934 None:intergenic 35.0%
! TCGTGGTAGATTATCTTTTC+CGG + tig0026054:2446-2465 Msa1426560:CDS 35.0%
CTCGATACTTTCTATTACGT+TGG + tig0026054:2611-2630 Msa1426560:intron 35.0%
TTCTATTACGTTGGACTTCT+CGG + tig0026054:2620-2639 Msa1426560:intron 35.0%
! CTTTGATTTATCTGGTCTGA+CGG + tig0026054:2847-2866 Msa1426560:CDS 35.0%
CTGCTGAATATTACCAATGA+TGG - tig0026054:3005-3024 None:intergenic 35.0%
! ATTGGTAATATTCAGCAGCA+AGG + tig0026054:3007-3026 Msa1426560:CDS 35.0%
! TTGGTAATATTCAGCAGCAA+GGG + tig0026054:3008-3027 Msa1426560:CDS 35.0%
!! TGATTCTTCTTTTGGGTCTT+CGG - tig0026054:1846-1865 None:intergenic 35.0%
!! AGAGTTTTTGTGGGTTTTGT+CGG - tig0026054:1906-1925 None:intergenic 35.0%
! TGAGATGGAAGAGTTTTTGT+GGG - tig0026054:1915-1934 None:intergenic 35.0%
! TCGTGGTAGATTATCTTTTC+CGG + tig0026054:2446-2465 Msa1426560:CDS 35.0%
CTCGATACTTTCTATTACGT+TGG + tig0026054:2611-2630 Msa1426560:intron 35.0%
TTCTATTACGTTGGACTTCT+CGG + tig0026054:2620-2639 Msa1426560:intron 35.0%
! CTTTGATTTATCTGGTCTGA+CGG + tig0026054:2847-2866 Msa1426560:CDS 35.0%
CTGCTGAATATTACCAATGA+TGG - tig0026054:3005-3024 None:intergenic 35.0%
! ATTGGTAATATTCAGCAGCA+AGG + tig0026054:3007-3026 Msa1426560:CDS 35.0%
! TTGGTAATATTCAGCAGCAA+GGG + tig0026054:3008-3027 Msa1426560:CDS 35.0%
!! TTCTTTTGGGTCTTCGGATT+CGG - tig0026054:1840-1859 None:intergenic 40.0%
! GGGAGAGTGATTCTTCTTTT+GGG - tig0026054:1853-1872 None:intergenic 40.0%
! AGGGAGAGTGATTCTTCTTT+TGG - tig0026054:1854-1873 None:intergenic 40.0%
! CTGAGATGGAAGAGTTTTTG+TGG - tig0026054:1916-1935 None:intergenic 40.0%
! TCCAGCTAGGTATGTTTTCA+TGG + tig0026054:2086-2105 Msa1426560:CDS 40.0%
ACCATGAAAACATACCTAGC+TGG - tig0026054:2090-2109 None:intergenic 40.0%
CTGCTTGCGAATAACATTTC+CGG - tig0026054:2158-2177 None:intergenic 40.0%
ATGTTATTCGCAAGCAGATC+CGG + tig0026054:2161-2180 Msa1426560:CDS 40.0%
GACTTTGTTGGGTCAAAAAC+CGG - tig0026054:2183-2202 None:intergenic 40.0%
ATACTGACAAACCTTGCTCT+TGG - tig0026054:2274-2293 None:intergenic 40.0%
TATCAAGTTTCTTACGGCGA+TGG + tig0026054:2291-2310 Msa1426560:CDS 40.0%
ATCAAGTTTCTTACGGCGAT+GGG + tig0026054:2292-2311 Msa1426560:CDS 40.0%
! GATAACGAAGGTCTTTTCGT+TGG + tig0026054:2399-2418 Msa1426560:CDS 40.0%
! TTATCTTTTCCGGTCCAAAC+CGG + tig0026054:2456-2475 Msa1426560:CDS 40.0%
TCTCTTATTGTCTTGTGGAC+CGG + tig0026054:2499-2518 Msa1426560:CDS 40.0%
!! AAACCGTCTTCCGTTGTTTT+TGG + tig0026054:2534-2553 Msa1426560:CDS 40.0%
TCACCAAAAACAACGGAAGA+CGG - tig0026054:2540-2559 None:intergenic 40.0%
!!! TTCCGTTGTTTTTGGTGACT+CGG + tig0026054:2542-2561 Msa1426560:CDS 40.0%
!! TTTTGAGAAGTGGAGTGAAC+CGG - tig0026054:2583-2602 None:intergenic 40.0%
TCTATTACGTTGGACTTCTC+GGG + tig0026054:2621-2640 Msa1426560:intron 40.0%
TTGCACTGAGAGATGCATTT+AGG + tig0026054:2771-2790 Msa1426560:CDS 40.0%
GTATCGAACAACGAAAACTC+CGG - tig0026054:2824-2843 None:intergenic 40.0%
GGAATCAAGTAATTCTGTGC+CGG - tig0026054:2926-2945 None:intergenic 40.0%
GGCACAGAATTACTTGATTC+CGG + tig0026054:2925-2944 Msa1426560:CDS 40.0%
ACAGAATTACTTGATTCCGG+TGG + tig0026054:2928-2947 Msa1426560:CDS 40.0%
! ATGAGTGGTTTGTCCATCAT+TGG + tig0026054:2989-3008 Msa1426560:CDS 40.0%
ATATTCAGCAGCAAGGGTTT+CGG + tig0026054:3014-3033 Msa1426560:CDS 40.0%
!! TTCTTTTGGGTCTTCGGATT+CGG - tig0026054:1840-1859 None:intergenic 40.0%
! GGGAGAGTGATTCTTCTTTT+GGG - tig0026054:1853-1872 None:intergenic 40.0%
! AGGGAGAGTGATTCTTCTTT+TGG - tig0026054:1854-1873 None:intergenic 40.0%
! CTGAGATGGAAGAGTTTTTG+TGG - tig0026054:1916-1935 None:intergenic 40.0%
! TCCAGCTAGGTATGTTTTCA+TGG + tig0026054:2086-2105 Msa1426560:CDS 40.0%
ACCATGAAAACATACCTAGC+TGG - tig0026054:2090-2109 None:intergenic 40.0%
CTGCTTGCGAATAACATTTC+CGG - tig0026054:2158-2177 None:intergenic 40.0%
ATGTTATTCGCAAGCAGATC+CGG + tig0026054:2161-2180 Msa1426560:CDS 40.0%
GACTTTGTTGGGTCAAAAAC+CGG - tig0026054:2183-2202 None:intergenic 40.0%
ATACTGACAAACCTTGCTCT+TGG - tig0026054:2274-2293 None:intergenic 40.0%
TATCAAGTTTCTTACGGCGA+TGG + tig0026054:2291-2310 Msa1426560:CDS 40.0%
ATCAAGTTTCTTACGGCGAT+GGG + tig0026054:2292-2311 Msa1426560:CDS 40.0%
! GATAACGAAGGTCTTTTCGT+TGG + tig0026054:2399-2418 Msa1426560:CDS 40.0%
! TTATCTTTTCCGGTCCAAAC+CGG + tig0026054:2456-2475 Msa1426560:CDS 40.0%
TCTCTTATTGTCTTGTGGAC+CGG + tig0026054:2499-2518 Msa1426560:CDS 40.0%
!! AAACCGTCTTCCGTTGTTTT+TGG + tig0026054:2534-2553 Msa1426560:CDS 40.0%
TCACCAAAAACAACGGAAGA+CGG - tig0026054:2540-2559 None:intergenic 40.0%
!!! TTCCGTTGTTTTTGGTGACT+CGG + tig0026054:2542-2561 Msa1426560:CDS 40.0%
!! TTTTGAGAAGTGGAGTGAAC+CGG - tig0026054:2583-2602 None:intergenic 40.0%
TCTATTACGTTGGACTTCTC+GGG + tig0026054:2621-2640 Msa1426560:intron 40.0%
TTGCACTGAGAGATGCATTT+AGG + tig0026054:2771-2790 Msa1426560:CDS 40.0%
GTATCGAACAACGAAAACTC+CGG - tig0026054:2824-2843 None:intergenic 40.0%
GGAATCAAGTAATTCTGTGC+CGG - tig0026054:2926-2945 None:intergenic 40.0%
GGCACAGAATTACTTGATTC+CGG + tig0026054:2925-2944 Msa1426560:CDS 40.0%
ACAGAATTACTTGATTCCGG+TGG + tig0026054:2928-2947 Msa1426560:CDS 40.0%
! ATGAGTGGTTTGTCCATCAT+TGG + tig0026054:2989-3008 Msa1426560:CDS 40.0%
ATATTCAGCAGCAAGGGTTT+CGG + tig0026054:3014-3033 Msa1426560:CDS 40.0%
!! TCTTTTGGGTCTTCGGATTC+GGG - tig0026054:1839-1858 None:intergenic 45.0%
GTCTATGTGGTGTAGCTGAA+GGG - tig0026054:1873-1892 None:intergenic 45.0%
TGTCTATGTGGTGTAGCTGA+AGG - tig0026054:1874-1893 None:intergenic 45.0%
!! GTTTTTGTGGGTTTTGTCGG+AGG - tig0026054:1903-1922 None:intergenic 45.0%
!! CATCTCTTTGGAGTCTGAGA+TGG - tig0026054:1930-1949 None:intergenic 45.0%
TGTTGCGAAGGATTTGACTC+TGG - tig0026054:1956-1975 None:intergenic 45.0%
TTTGTTGAGAGCTGTTGCGA+AGG - tig0026054:1968-1987 None:intergenic 45.0%
TTGAGAAAGTCCGGAGACTA+TGG - tig0026054:2028-2047 None:intergenic 45.0%
ATAGTCTCCGGACTTTCTCA+AGG + tig0026054:2027-2046 Msa1426560:CDS 45.0%
GGCGAATATTTCACTCGCAT+CGG + tig0026054:2054-2073 Msa1426560:CDS 45.0%
! TATTTCACTCGCATCGGTGT+TGG + tig0026054:2060-2079 Msa1426560:CDS 45.0%
! GTTTTCATGGTTCTCGACAC+CGG + tig0026054:2099-2118 Msa1426560:CDS 45.0%
TGCGAATAACATTTCCGGCA+TGG - tig0026054:2153-2172 None:intergenic 45.0%
CGTAGGAACGTGACTTTGTT+GGG - tig0026054:2194-2213 None:intergenic 45.0%
!! GTTGGTGCTGCTGGTTTATT+AGG + tig0026054:2417-2436 Msa1426560:CDS 45.0%
!! GCTGCTGGTTTATTAGGTCT+TGG + tig0026054:2423-2442 Msa1426560:CDS 45.0%
GGTTTATTAGGTCTTGGTCG+TGG + tig0026054:2429-2448 Msa1426560:CDS 45.0%
!! ACGGTTTTGATGTAGCAGAC+CGG - tig0026054:2521-2540 None:intergenic 45.0%
AGCCGAGTCACCAAAAACAA+CGG - tig0026054:2547-2566 None:intergenic 45.0%
TTTGAGAAGTGGAGTGAACC+GGG - tig0026054:2582-2601 None:intergenic 45.0%
AATGATAACTCCGCCGTTTC+CGG - tig0026054:2708-2727 None:intergenic 45.0%
!! GGCGGAGTTATCATTGATTC+AGG + tig0026054:2713-2732 Msa1426560:CDS 45.0%
TGTAAGCAGGTCGAGTCAAT+CGG - tig0026054:2751-2770 None:intergenic 45.0%
TCTCTCAGTGCAATGTAAGC+AGG - tig0026054:2764-2783 None:intergenic 45.0%
CTGAGAGATGCATTTAGGCT+TGG + tig0026054:2776-2795 Msa1426560:CDS 45.0%
CAAGTAATTCTGTGCCGGAA+GGG - tig0026054:2921-2940 None:intergenic 45.0%
TCAAGTAATTCTGTGCCGGA+AGG - tig0026054:2922-2941 None:intergenic 45.0%
AGTTTCTGCTTTGCTTTCGC+CGG + tig0026054:2962-2981 Msa1426560:CDS 45.0%
TATTCAGCAGCAAGGGTTTC+GGG + tig0026054:3015-3034 Msa1426560:CDS 45.0%
!! TCTTTTGGGTCTTCGGATTC+GGG - tig0026054:1839-1858 None:intergenic 45.0%
GTCTATGTGGTGTAGCTGAA+GGG - tig0026054:1873-1892 None:intergenic 45.0%
TGTCTATGTGGTGTAGCTGA+AGG - tig0026054:1874-1893 None:intergenic 45.0%
!! GTTTTTGTGGGTTTTGTCGG+AGG - tig0026054:1903-1922 None:intergenic 45.0%
!! CATCTCTTTGGAGTCTGAGA+TGG - tig0026054:1930-1949 None:intergenic 45.0%
TGTTGCGAAGGATTTGACTC+TGG - tig0026054:1956-1975 None:intergenic 45.0%
TTTGTTGAGAGCTGTTGCGA+AGG - tig0026054:1968-1987 None:intergenic 45.0%
TTGAGAAAGTCCGGAGACTA+TGG - tig0026054:2028-2047 None:intergenic 45.0%
ATAGTCTCCGGACTTTCTCA+AGG + tig0026054:2027-2046 Msa1426560:CDS 45.0%
GGCGAATATTTCACTCGCAT+CGG + tig0026054:2054-2073 Msa1426560:CDS 45.0%
! TATTTCACTCGCATCGGTGT+TGG + tig0026054:2060-2079 Msa1426560:CDS 45.0%
! GTTTTCATGGTTCTCGACAC+CGG + tig0026054:2099-2118 Msa1426560:CDS 45.0%
TGCGAATAACATTTCCGGCA+TGG - tig0026054:2153-2172 None:intergenic 45.0%
CGTAGGAACGTGACTTTGTT+GGG - tig0026054:2194-2213 None:intergenic 45.0%
!! GTTGGTGCTGCTGGTTTATT+AGG + tig0026054:2417-2436 Msa1426560:CDS 45.0%
!! GCTGCTGGTTTATTAGGTCT+TGG + tig0026054:2423-2442 Msa1426560:CDS 45.0%
GGTTTATTAGGTCTTGGTCG+TGG + tig0026054:2429-2448 Msa1426560:CDS 45.0%
!! ACGGTTTTGATGTAGCAGAC+CGG - tig0026054:2521-2540 None:intergenic 45.0%
AGCCGAGTCACCAAAAACAA+CGG - tig0026054:2547-2566 None:intergenic 45.0%
TTTGAGAAGTGGAGTGAACC+GGG - tig0026054:2582-2601 None:intergenic 45.0%
AATGATAACTCCGCCGTTTC+CGG - tig0026054:2708-2727 None:intergenic 45.0%
!! GGCGGAGTTATCATTGATTC+AGG + tig0026054:2713-2732 Msa1426560:CDS 45.0%
TGTAAGCAGGTCGAGTCAAT+CGG - tig0026054:2751-2770 None:intergenic 45.0%
TCTCTCAGTGCAATGTAAGC+AGG - tig0026054:2764-2783 None:intergenic 45.0%
CTGAGAGATGCATTTAGGCT+TGG + tig0026054:2776-2795 Msa1426560:CDS 45.0%
CAAGTAATTCTGTGCCGGAA+GGG - tig0026054:2921-2940 None:intergenic 45.0%
TCAAGTAATTCTGTGCCGGA+AGG - tig0026054:2922-2941 None:intergenic 45.0%
AGTTTCTGCTTTGCTTTCGC+CGG + tig0026054:2962-2981 Msa1426560:CDS 45.0%
TATTCAGCAGCAAGGGTTTC+GGG + tig0026054:3015-3034 Msa1426560:CDS 45.0%
TGACTCTGGCAGCATCTCTT+TGG - tig0026054:1942-1961 None:intergenic 50.0%
!! AAGCCAGTAGCGGATCTATG+GGG - tig0026054:1997-2016 None:intergenic 50.0%
!! GAAGCCAGTAGCGGATCTAT+GGG - tig0026054:1998-2017 None:intergenic 50.0%
!! TGAAGCCAGTAGCGGATCTA+TGG - tig0026054:1999-2018 None:intergenic 50.0%
TTCAGCAGCTCCATAGTCTC+CGG + tig0026054:2015-2034 Msa1426560:CDS 50.0%
GCGTAGGAACGTGACTTTGT+TGG - tig0026054:2195-2214 None:intergenic 50.0%
ACAAAGTCACGTTCCTACGC+CGG + tig0026054:2195-2214 Msa1426560:CDS 50.0%
TGGTTGCAACACCAAGAGCA+AGG + tig0026054:2260-2279 Msa1426560:CDS 50.0%
GGCGATGGGTCTTTCACTTT+CGG + tig0026054:2306-2325 Msa1426560:CDS 50.0%
TCGGAACGTGAGTGTTTCAG+TGG - tig0026054:2340-2359 None:intergenic 50.0%
! GGGTGTGGACATGATAACGA+AGG + tig0026054:2387-2406 Msa1426560:CDS 50.0%
TTTCTGATTGAACCGGCGAC+CGG - tig0026054:2478-2497 None:intergenic 50.0%
GTAAGCAGGTCGAGTCAATC+GGG - tig0026054:2750-2769 None:intergenic 50.0%
!! TGGTGCTACGCATCTGAAGA+AGG + tig0026054:2796-2815 Msa1426560:CDS 50.0%
ATCTGGTCTGACGGAAGTGA+AGG + tig0026054:2856-2875 Msa1426560:CDS 50.0%
TTGATTCCGGTGGACAACAG+TGG + tig0026054:2938-2957 Msa1426560:CDS 50.0%
TGATTCCGGTGGACAACAGT+GGG + tig0026054:2939-2958 Msa1426560:CDS 50.0%
AAACTCCCACTGTTGTCCAC+CGG - tig0026054:2947-2966 None:intergenic 50.0%
GGACAAACCACTCATCGTTC+CGG - tig0026054:2984-3003 None:intergenic 50.0%
GTTATGATCTTGCGAGCTCG+CGG + tig0026054:3041-3060 Msa1426560:CDS 50.0%
TTATGATCTTGCGAGCTCGC+GGG + tig0026054:3042-3061 Msa1426560:CDS 50.0%
TGACTCTGGCAGCATCTCTT+TGG - tig0026054:1942-1961 None:intergenic 50.0%
!! AAGCCAGTAGCGGATCTATG+GGG - tig0026054:1997-2016 None:intergenic 50.0%
!! GAAGCCAGTAGCGGATCTAT+GGG - tig0026054:1998-2017 None:intergenic 50.0%
!! TGAAGCCAGTAGCGGATCTA+TGG - tig0026054:1999-2018 None:intergenic 50.0%
TTCAGCAGCTCCATAGTCTC+CGG + tig0026054:2015-2034 Msa1426560:CDS 50.0%
GCGTAGGAACGTGACTTTGT+TGG - tig0026054:2195-2214 None:intergenic 50.0%
ACAAAGTCACGTTCCTACGC+CGG + tig0026054:2195-2214 Msa1426560:CDS 50.0%
TGGTTGCAACACCAAGAGCA+AGG + tig0026054:2260-2279 Msa1426560:CDS 50.0%
GGCGATGGGTCTTTCACTTT+CGG + tig0026054:2306-2325 Msa1426560:CDS 50.0%
TCGGAACGTGAGTGTTTCAG+TGG - tig0026054:2340-2359 None:intergenic 50.0%
! GGGTGTGGACATGATAACGA+AGG + tig0026054:2387-2406 Msa1426560:CDS 50.0%
TTTCTGATTGAACCGGCGAC+CGG - tig0026054:2478-2497 None:intergenic 50.0%
GTAAGCAGGTCGAGTCAATC+GGG - tig0026054:2750-2769 None:intergenic 50.0%
!! TGGTGCTACGCATCTGAAGA+AGG + tig0026054:2796-2815 Msa1426560:CDS 50.0%
ATCTGGTCTGACGGAAGTGA+AGG + tig0026054:2856-2875 Msa1426560:CDS 50.0%
TTGATTCCGGTGGACAACAG+TGG + tig0026054:2938-2957 Msa1426560:CDS 50.0%
TGATTCCGGTGGACAACAGT+GGG + tig0026054:2939-2958 Msa1426560:CDS 50.0%
AAACTCCCACTGTTGTCCAC+CGG - tig0026054:2947-2966 None:intergenic 50.0%
GGACAAACCACTCATCGTTC+CGG - tig0026054:2984-3003 None:intergenic 50.0%
GTTATGATCTTGCGAGCTCG+CGG + tig0026054:3041-3060 Msa1426560:CDS 50.0%
TTATGATCTTGCGAGCTCGC+GGG + tig0026054:3042-3061 Msa1426560:CDS 50.0%
TGGGTCTTCGGATTCGGGTA+TGG - tig0026054:1834-1853 None:intergenic 55.0%
!! CGGAGGAGAGAGTGTCTATG+TGG - tig0026054:1886-1905 None:intergenic 55.0%
TCCGGACTTTCTCAAGGCAG+CGG + tig0026054:2033-2052 Msa1426560:CDS 55.0%
!! TCGGTGTTGGAACTCCAGCT+AGG + tig0026054:2073-2092 Msa1426560:CDS 55.0%
TAGCCACACCACGTCACTTC+CGG - tig0026054:2121-2140 None:intergenic 55.0%
!!! GGTCTTTTCGTTGGTGCTGC+TGG + tig0026054:2408-2427 Msa1426560:CDS 55.0%
GGACTTCTCGGGATCAGTGT+CGG + tig0026054:2632-2651 Msa1426560:intron 55.0%
GTCGAGTTTGAAGAGCGAGG+CGG - tig0026054:2681-2700 None:intergenic 55.0%
! GGTGTCGAGTTTGAAGAGCG+AGG - tig0026054:2684-2703 None:intergenic 55.0%
CTCTTCAAACTCGACACCGC+CGG + tig0026054:2686-2705 Msa1426560:CDS 55.0%
AAACTCGACACCGCCGGAAA+CGG + tig0026054:2692-2711 Msa1426560:CDS 55.0%
! TACGCATCTGAAGAAGGCGC+CGG + tig0026054:2802-2821 Msa1426560:CDS 55.0%
!! AGGTGCTGATGTGTCCCTTC+CGG + tig0026054:2904-2923 Msa1426560:CDS 55.0%
GGGTCGGGTTTGCACCAAAA+GGG + tig0026054:3062-3081 Msa1426560:CDS 55.0%
TGGGTCTTCGGATTCGGGTA+TGG - tig0026054:1834-1853 None:intergenic 55.0%
!! CGGAGGAGAGAGTGTCTATG+TGG - tig0026054:1886-1905 None:intergenic 55.0%
TCCGGACTTTCTCAAGGCAG+CGG + tig0026054:2033-2052 Msa1426560:CDS 55.0%
!! TCGGTGTTGGAACTCCAGCT+AGG + tig0026054:2073-2092 Msa1426560:CDS 55.0%
TAGCCACACCACGTCACTTC+CGG - tig0026054:2121-2140 None:intergenic 55.0%
!!! GGTCTTTTCGTTGGTGCTGC+TGG + tig0026054:2408-2427 Msa1426560:CDS 55.0%
GGACTTCTCGGGATCAGTGT+CGG + tig0026054:2632-2651 Msa1426560:intron 55.0%
GTCGAGTTTGAAGAGCGAGG+CGG - tig0026054:2681-2700 None:intergenic 55.0%
! GGTGTCGAGTTTGAAGAGCG+AGG - tig0026054:2684-2703 None:intergenic 55.0%
CTCTTCAAACTCGACACCGC+CGG + tig0026054:2686-2705 Msa1426560:CDS 55.0%
AAACTCGACACCGCCGGAAA+CGG + tig0026054:2692-2711 Msa1426560:CDS 55.0%
! TACGCATCTGAAGAAGGCGC+CGG + tig0026054:2802-2821 Msa1426560:CDS 55.0%
!! AGGTGCTGATGTGTCCCTTC+CGG + tig0026054:2904-2923 Msa1426560:CDS 55.0%
GGGTCGGGTTTGCACCAAAA+GGG + tig0026054:3062-3081 Msa1426560:CDS 55.0%
CGTCCCCATAGATCCGCTAC+TGG + tig0026054:1991-2010 Msa1426560:CDS 60.0%
GGAGCTGCTGAAGCCAGTAG+CGG - tig0026054:2007-2026 None:intergenic 60.0%
GCCGCTGCCTTGAGAAAGTC+CGG - tig0026054:2037-2056 None:intergenic 60.0%
TCTCGACACCGGAAGTGACG+TGG + tig0026054:2110-2129 Msa1426560:CDS 60.0%
ACACCGGAAGTGACGTGGTG+TGG + tig0026054:2115-2134 Msa1426560:CDS 60.0%
GGCTACAATGTGCGCCATGC+CGG + tig0026054:2136-2155 Msa1426560:CDS 60.0%
TCCTACGCCGGAATCCCATG+CGG + tig0026054:2207-2226 Msa1426560:CDS 60.0%
!! AGGAGCACCGCATGGGATTC+CGG - tig0026054:2217-2236 None:intergenic 60.0%
!! GGCAAAGAGGAGCACCGCAT+GGG - tig0026054:2224-2243 None:intergenic 60.0%
CATGCGGTGCTCCTCTTTGC+CGG + tig0026054:2223-2242 Msa1426560:CDS 60.0%
! AACCAGCAGTGTCGAGTCGC+CGG - tig0026054:2245-2264 None:intergenic 60.0%
GATTGAACCGGCGACCGGTT+TGG - tig0026054:2473-2492 None:intergenic 60.0%
!! TCGGCTGTTTCTCGAACGCC+CGG + tig0026054:2561-2580 Msa1426560:CDS 60.0%
! CTTCTCGGGATCAGTGTCGG+TGG + tig0026054:2635-2654 Msa1426560:intron 60.0%
GATAACTCCGCCGTTTCCGG+CGG - tig0026054:2705-2724 None:intergenic 60.0%
GCTTTCGCCGGAACGATGAG+TGG + tig0026054:2974-2993 Msa1426560:CDS 60.0%
CGGGTCGGGTTTGCACCAAA+AGG + tig0026054:3061-3080 Msa1426560:CDS 60.0%
CGTCCCCATAGATCCGCTAC+TGG + tig0026054:1991-2010 Msa1426560:CDS 60.0%
GGAGCTGCTGAAGCCAGTAG+CGG - tig0026054:2007-2026 None:intergenic 60.0%
GCCGCTGCCTTGAGAAAGTC+CGG - tig0026054:2037-2056 None:intergenic 60.0%
TCTCGACACCGGAAGTGACG+TGG + tig0026054:2110-2129 Msa1426560:CDS 60.0%
ACACCGGAAGTGACGTGGTG+TGG + tig0026054:2115-2134 Msa1426560:CDS 60.0%
GGCTACAATGTGCGCCATGC+CGG + tig0026054:2136-2155 Msa1426560:CDS 60.0%
TCCTACGCCGGAATCCCATG+CGG + tig0026054:2207-2226 Msa1426560:CDS 60.0%
!! AGGAGCACCGCATGGGATTC+CGG - tig0026054:2217-2236 None:intergenic 60.0%
!! GGCAAAGAGGAGCACCGCAT+GGG - tig0026054:2224-2243 None:intergenic 60.0%
CATGCGGTGCTCCTCTTTGC+CGG + tig0026054:2223-2242 Msa1426560:CDS 60.0%
! AACCAGCAGTGTCGAGTCGC+CGG - tig0026054:2245-2264 None:intergenic 60.0%
GATTGAACCGGCGACCGGTT+TGG - tig0026054:2473-2492 None:intergenic 60.0%
!! TCGGCTGTTTCTCGAACGCC+CGG + tig0026054:2561-2580 Msa1426560:CDS 60.0%
! CTTCTCGGGATCAGTGTCGG+TGG + tig0026054:2635-2654 Msa1426560:intron 60.0%
GATAACTCCGCCGTTTCCGG+CGG - tig0026054:2705-2724 None:intergenic 60.0%
GCTTTCGCCGGAACGATGAG+TGG + tig0026054:2974-2993 Msa1426560:CDS 60.0%
CGGGTCGGGTTTGCACCAAA+AGG + tig0026054:3061-3080 Msa1426560:CDS 60.0%
ACCGCATGGGATTCCGGCGT+AGG - tig0026054:2211-2230 None:intergenic 65.0%
!! CGGCAAAGAGGAGCACCGCA+TGG - tig0026054:2225-2244 None:intergenic 65.0%
GTGTCGAGTCGCCGGCAAAG+AGG - tig0026054:2237-2256 None:intergenic 65.0%
CACGTTCCGAAAGACGCGCG+TGG + tig0026054:2350-2369 Msa1426560:CDS 65.0%
! GCGTGGCGCGTGTGGCTTTA+GGG + tig0026054:2367-2386 Msa1426560:CDS 65.0%
!! GCGCGTGTGGCTTTAGGGTG+TGG + tig0026054:2372-2391 Msa1426560:CDS 65.0%
TTCCGGTCCAAACCGGTCGC+CGG + tig0026054:2463-2482 Msa1426560:CDS 65.0%
!! AACCGGCGACCGGTTTGGAC+CGG - tig0026054:2468-2487 None:intergenic 65.0%
GTCGGTGGTGCTCCAGTTCG+TGG + tig0026054:2650-2669 Msa1426560:intron 65.0%
GATCTTGCGAGCTCGCGGGT+CGG + tig0026054:3046-3065 Msa1426560:CDS 65.0%
ATCTTGCGAGCTCGCGGGTC+GGG + tig0026054:3047-3066 Msa1426560:CDS 65.0%
ACCGCATGGGATTCCGGCGT+AGG - tig0026054:2211-2230 None:intergenic 65.0%
!! CGGCAAAGAGGAGCACCGCA+TGG - tig0026054:2225-2244 None:intergenic 65.0%
GTGTCGAGTCGCCGGCAAAG+AGG - tig0026054:2237-2256 None:intergenic 65.0%
CACGTTCCGAAAGACGCGCG+TGG + tig0026054:2350-2369 Msa1426560:CDS 65.0%
! GCGTGGCGCGTGTGGCTTTA+GGG + tig0026054:2367-2386 Msa1426560:CDS 65.0%
!! GCGCGTGTGGCTTTAGGGTG+TGG + tig0026054:2372-2391 Msa1426560:CDS 65.0%
TTCCGGTCCAAACCGGTCGC+CGG + tig0026054:2463-2482 Msa1426560:CDS 65.0%
!! AACCGGCGACCGGTTTGGAC+CGG - tig0026054:2468-2487 None:intergenic 65.0%
GTCGGTGGTGCTCCAGTTCG+TGG + tig0026054:2650-2669 Msa1426560:intron 65.0%
GATCTTGCGAGCTCGCGGGT+CGG + tig0026054:3046-3065 Msa1426560:CDS 65.0%
ATCTTGCGAGCTCGCGGGTC+GGG + tig0026054:3047-3066 Msa1426560:CDS 65.0%
TGCCGGCGACTCGACACTGC+TGG + tig0026054:2240-2259 Msa1426560:CDS 70.0%
CACGCGCCACGCGCGTCTTT+CGG - tig0026054:2359-2378 None:intergenic 70.0%
AAAGACGCGCGTGGCGCGTG+TGG + tig0026054:2359-2378 Msa1426560:CDS 70.0%
CGCGTGGCGCGTGTGGCTTT+AGG + tig0026054:2366-2385 Msa1426560:CDS 70.0%
GAGGCGGAGACGCCACGAAC+TGG - tig0026054:2665-2684 None:intergenic 70.0%
CTCGACACCGCCGGAAACGG+CGG + tig0026054:2695-2714 Msa1426560:CDS 70.0%
TGCCGGCGACTCGACACTGC+TGG + tig0026054:2240-2259 Msa1426560:CDS 70.0%
CACGCGCCACGCGCGTCTTT+CGG - tig0026054:2359-2378 None:intergenic 70.0%
AAAGACGCGCGTGGCGCGTG+TGG + tig0026054:2359-2378 Msa1426560:CDS 70.0%
CGCGTGGCGCGTGTGGCTTT+AGG + tig0026054:2366-2385 Msa1426560:CDS 70.0%
GAGGCGGAGACGCCACGAAC+TGG - tig0026054:2665-2684 None:intergenic 70.0%
CTCGACACCGCCGGAAACGG+CGG + tig0026054:2695-2714 Msa1426560:CDS 70.0%
Chromosome Type Strat End Strand Name
tig0026054 gene 1805 3093 1805 ID=Msa1426560;Name=Msa1426560
tig0026054 mRNA 1805 3093 1805 ID=Msa1426560-mRNA-1;Parent=Msa1426560;Name=Msa1426560-mRNA-1;_AED=0.08;_eAED=0.11;_QI=0|0|0|1|1|1|2|0|401
tig0026054 exon 1805 2582 1805 ID=Msa1426560-mRNA-1:exon:5022;Parent=Msa1426560-mRNA-1
tig0026054 exon 2666 3093 2666 ID=Msa1426560-mRNA-1:exon:5023;Parent=Msa1426560-mRNA-1
tig0026054 CDS 1805 2582 1805 ID=Msa1426560-mRNA-1:cds;Parent=Msa1426560-mRNA-1
tig0026054 CDS 2666 3093 2666 ID=Msa1426560-mRNA-1:cds;Parent=Msa1426560-mRNA-1
Gene Sequence

>Msa1426560

ATGGCCAGAATCAGAAGAATCTTTATCCATACCCGAATCCGAAGACCCAAAAGAAGAATCACTCTCCCTTCAGCTACACCACATAGACACTCTCTCCTCCGACAAAACCCACAAAAACTCTTCCATCTCAGACTCCAAAGAGATGCTGCCAGAGTCAAATCCTTCGCAACAGCTCTCAACAAAACTCGTCCCCATAGATCCGCTACTGGCTTCAGCAGCTCCATAGTCTCCGGACTTTCTCAAGGCAGCGGCGAATATTTCACTCGCATCGGTGTTGGAACTCCAGCTAGGTATGTTTTCATGGTTCTCGACACCGGAAGTGACGTGGTGTGGCTACAATGTGCGCCATGCCGGAAATGTTATTCGCAAGCAGATCCGGTTTTTGACCCAACAAAGTCACGTTCCTACGCCGGAATCCCATGCGGTGCTCCTCTTTGCCGGCGACTCGACACTGCTGGTTGCAACACCAAGAGCAAGGTTTGTCAGTATCAAGTTTCTTACGGCGATGGGTCTTTCACTTTCGGTGATTTCTCCACTGAAACACTCACGTTCCGAAAGACGCGCGTGGCGCGTGTGGCTTTAGGGTGTGGACATGATAACGAAGGTCTTTTCGTTGGTGCTGCTGGTTTATTAGGTCTTGGTCGTGGTAGATTATCTTTTCCGGTCCAAACCGGTCGCCGGTTCAATCAGAAATTCTCTTATTGTCTTGTGGACCGGTCTGCTACATCAAAACCGTCTTCCGTTGTTTTTGGTGACTCGGCTGTTTCTCGAACGCCCGTTCGTGGCGTCTCCGCCTCGCTCTTCAAACTCGACACCGCCGGAAACGGCGGAGTTATCATTGATTCAGGAACTTCAGTAACCCGATTGACTCGACCTGCTTACATTGCACTGAGAGATGCATTTAGGCTTGGTGCTACGCATCTGAAGAAGGCGCCGGAGTTTTCGTTGTTCGATACTTGCTTTGATTTATCTGGTCTGACGGAAGTGAAGGTGCCGACATTAGTGCTTCATTTTCAAGGTGCTGATGTGTCCCTTCCGGCACAGAATTACTTGATTCCGGTGGACAACAGTGGGAGTTTCTGCTTTGCTTTCGCCGGAACGATGAGTGGTTTGTCCATCATTGGTAATATTCAGCAGCAAGGGTTTCGGGTCAGTTATGATCTTGCGAGCTCGCGGGTCGGGTTTGCACCAAAAGGGTGTGAATGA
Protein sequence

>Msa1426560

MARIRRIFIHTRIRRPKRRITLPSATPHRHSLLRQNPQKLFHLRLQRDAARVKSFATALNKTRPHRSATGFSSSIVSGLSQGSGEYFTRIGVGTPARYVFMVLDTGSDVVWLQCAPCRKCYSQADPVFDPTKSRSYAGIPCGAPLCRRLDTAGCNTKSKVCQYQVSYGDGSFTFGDFSTETLTFRKTRVARVALGCGHDNEGLFVGAAGLLGLGRGRLSFPVQTGRRFNQKFSYCLVDRSATSKPSSVVFGDSAVSRTPVRGVSASLFKLDTAGNGGVIIDSGTSVTRLTRPAYIALRDAFRLGATHLKKAPEFSLFDTCFDLSGLTEVKVPTLVLHFQGADVSLPAQNYLIPVDNSGSFCFAFAGTMSGLSIIGNIQQQGFRVSYDLASSRVGFAPKGCE*