Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1428550 | XP_013463353.1 | 98.733 | 789 | 10 | 0 | 1 | 789 | 1 | 789 | 0.0 | 1599 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1428550 | sp|Q9SA05|POT10_ARATH | 76.336 | 786 | 182 | 4 | 6 | 789 | 13 | 796 | 0.0 | 1212 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1428550 | A0A072V6Z7 | 98.733 | 789 | 10 | 0 | 1 | 789 | 1 | 789 | 0.0 | 1599 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0243810 | Msa1428550 | 0.990271 | 7.566328e-182 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1428550 | MtrunA17_Chr2g0297291 | 98.733 | 789 | 10 | 0 | 1 | 789 | 1 | 789 | 0.0 | 1599 |
| Msa1428550 | MtrunA17_Chr4g0052401 | 81.337 | 793 | 138 | 5 | 1 | 789 | 1 | 787 | 0.0 | 1285 |
| Msa1428550 | MtrunA17_Chr2g0297311 | 96.180 | 445 | 17 | 0 | 1 | 445 | 1 | 445 | 0.0 | 874 |
| Msa1428550 | MtrunA17_Chr6g0461871 | 49.150 | 765 | 360 | 6 | 50 | 789 | 25 | 785 | 0.0 | 747 |
| Msa1428550 | MtrunA17_Chr6g0451081 | 48.158 | 787 | 372 | 11 | 28 | 789 | 1 | 776 | 0.0 | 721 |
| Msa1428550 | MtrunA17_Chr5g0430731 | 45.939 | 751 | 389 | 4 | 42 | 789 | 18 | 754 | 0.0 | 712 |
| Msa1428550 | MtrunA17_Chr3g0128831 | 46.241 | 798 | 389 | 8 | 28 | 789 | 1 | 794 | 0.0 | 701 |
| Msa1428550 | MtrunA17_Chr8g0365001 | 46.718 | 777 | 394 | 8 | 26 | 789 | 71 | 840 | 0.0 | 696 |
| Msa1428550 | MtrunA17_Chr7g0268981 | 44.720 | 767 | 387 | 6 | 23 | 787 | 40 | 771 | 0.0 | 691 |
| Msa1428550 | MtrunA17_Chr2g0297321 | 95.942 | 345 | 14 | 0 | 445 | 789 | 3 | 347 | 0.0 | 685 |
| Msa1428550 | MtrunA17_Chr4g0055471 | 44.221 | 796 | 420 | 10 | 11 | 789 | 27 | 815 | 0.0 | 660 |
| Msa1428550 | MtrunA17_Chr2g0279131 | 43.742 | 791 | 422 | 10 | 19 | 789 | 62 | 849 | 0.0 | 654 |
| Msa1428550 | MtrunA17_Chr8g0387661 | 43.167 | 783 | 403 | 10 | 41 | 789 | 18 | 792 | 0.0 | 630 |
| Msa1428550 | MtrunA17_Chr8g0380281 | 43.170 | 776 | 415 | 8 | 31 | 789 | 16 | 782 | 0.0 | 628 |
| Msa1428550 | MtrunA17_Chr5g0429991 | 43.593 | 757 | 398 | 10 | 52 | 789 | 103 | 849 | 0.0 | 624 |
| Msa1428550 | MtrunA17_Chr8g0393241 | 38.191 | 796 | 431 | 12 | 40 | 786 | 13 | 796 | 1.50e-179 | 535 |
| Msa1428550 | MtrunA17_Chr8g0375411 | 40.781 | 640 | 353 | 7 | 34 | 668 | 13 | 631 | 2.79e-163 | 489 |
| Msa1428550 | MtrunA17_Chr8g0365031 | 41.463 | 574 | 269 | 5 | 218 | 787 | 39 | 549 | 2.28e-155 | 464 |
| Msa1428550 | MtrunA17_Chr8g0344561 | 41.117 | 591 | 317 | 5 | 199 | 789 | 13 | 572 | 4.24e-153 | 459 |
| Msa1428550 | MtrunA17_Chr5g0413721 | 53.899 | 436 | 183 | 6 | 28 | 449 | 1 | 432 | 3.45e-148 | 456 |
| Msa1428550 | MtrunA17_Chr5g0413721 | 41.573 | 356 | 198 | 3 | 444 | 789 | 516 | 871 | 1.65e-81 | 279 |
| Msa1428550 | MtrunA17_Chr5g0430571 | 41.156 | 571 | 282 | 9 | 219 | 789 | 19 | 535 | 1.05e-147 | 443 |
| Msa1428550 | MtrunA17_Chr8g0344591 | 44.570 | 442 | 222 | 3 | 199 | 640 | 13 | 431 | 8.82e-127 | 387 |
| Msa1428550 | MtrunA17_Chr5g0413751 | 53.409 | 176 | 82 | 0 | 445 | 620 | 133 | 308 | 2.33e-61 | 209 |
| Msa1428550 | MtrunA17_Chr5g0413751 | 43.478 | 92 | 47 | 1 | 109 | 195 | 47 | 138 | 1.09e-16 | 81.6 |
| Msa1428550 | MtrunA17_Chr8g0365041 | 47.907 | 215 | 100 | 5 | 9 | 214 | 18 | 229 | 1.76e-54 | 188 |
| Msa1428550 | MtrunA17_Chr8g0344581 | 54.667 | 150 | 65 | 1 | 50 | 199 | 4 | 150 | 2.35e-50 | 173 |
| Msa1428550 | MtrunA17_Chr8g0344551 | 54.667 | 150 | 65 | 1 | 50 | 199 | 4 | 150 | 3.55e-50 | 172 |
| Msa1428550 | MtrunA17_Chr5g0430551 | 51.299 | 154 | 72 | 1 | 49 | 199 | 10 | 163 | 3.39e-45 | 160 |
| Msa1428550 | MtrunA17_Chr1g0159401 | 39.655 | 116 | 63 | 2 | 197 | 312 | 12 | 120 | 1.00e-19 | 87.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1428550 | AT1G31120.1 | 76.336 | 786 | 182 | 4 | 6 | 789 | 13 | 796 | 0.0 | 1212 |
| Msa1428550 | AT2G35060.4 | 76.493 | 787 | 175 | 7 | 6 | 789 | 13 | 792 | 0.0 | 1208 |
| Msa1428550 | AT2G35060.1 | 76.493 | 787 | 175 | 7 | 6 | 789 | 13 | 792 | 0.0 | 1208 |
| Msa1428550 | AT2G35060.3 | 76.493 | 787 | 175 | 7 | 6 | 789 | 13 | 792 | 0.0 | 1208 |
| Msa1428550 | AT2G35060.2 | 76.396 | 788 | 175 | 8 | 6 | 789 | 13 | 793 | 0.0 | 1204 |
| Msa1428550 | AT4G19960.2 | 69.912 | 791 | 226 | 4 | 10 | 789 | 18 | 807 | 0.0 | 1078 |
| Msa1428550 | AT4G19960.1 | 68.525 | 807 | 226 | 5 | 10 | 789 | 18 | 823 | 0.0 | 1069 |
| Msa1428550 | AT4G19960.3 | 67.687 | 817 | 226 | 5 | 10 | 789 | 18 | 833 | 0.0 | 1065 |
| Msa1428550 | AT4G19960.4 | 68.954 | 583 | 169 | 4 | 218 | 789 | 5 | 586 | 0.0 | 795 |
| Msa1428550 | AT3G02050.1 | 49.482 | 772 | 350 | 6 | 50 | 789 | 26 | 789 | 0.0 | 716 |
| Msa1428550 | AT2G40540.1 | 47.229 | 794 | 387 | 7 | 28 | 789 | 1 | 794 | 0.0 | 708 |
| Msa1428550 | AT2G40540.5 | 47.229 | 794 | 387 | 7 | 28 | 789 | 1 | 794 | 0.0 | 708 |
| Msa1428550 | AT2G40540.4 | 47.229 | 794 | 387 | 7 | 28 | 789 | 1 | 794 | 0.0 | 708 |
| Msa1428550 | AT2G40540.2 | 47.229 | 794 | 387 | 7 | 28 | 789 | 1 | 794 | 0.0 | 708 |
| Msa1428550 | AT2G40540.3 | 47.229 | 794 | 387 | 7 | 28 | 789 | 1 | 794 | 0.0 | 708 |
| Msa1428550 | AT5G14880.1 | 49.428 | 787 | 367 | 11 | 28 | 789 | 1 | 781 | 0.0 | 704 |
| Msa1428550 | AT1G60160.1 | 45.511 | 802 | 413 | 9 | 3 | 789 | 35 | 827 | 0.0 | 702 |
| Msa1428550 | AT1G70300.1 | 47.141 | 787 | 386 | 9 | 28 | 789 | 1 | 782 | 0.0 | 696 |
| Msa1428550 | AT2G30070.1 | 45.140 | 751 | 353 | 3 | 42 | 789 | 18 | 712 | 0.0 | 669 |
| Msa1428550 | AT4G13420.1 | 44.233 | 789 | 415 | 9 | 8 | 787 | 11 | 783 | 0.0 | 668 |
| Msa1428550 | AT4G33530.1 | 44.760 | 811 | 408 | 13 | 5 | 789 | 59 | 855 | 0.0 | 663 |
| Msa1428550 | AT4G23640.1 | 44.258 | 775 | 404 | 7 | 40 | 789 | 4 | 775 | 0.0 | 633 |
| Msa1428550 | AT5G09400.1 | 43.580 | 810 | 422 | 12 | 5 | 789 | 59 | 858 | 0.0 | 632 |
| Msa1428550 | AT2G30070.2 | 43.586 | 647 | 309 | 2 | 143 | 789 | 2 | 592 | 0.0 | 556 |
| Msa1428550 | AT4G33530.2 | 45.219 | 617 | 324 | 6 | 184 | 789 | 14 | 627 | 0.0 | 546 |
Find 183 sgRNAs with CRISPR-Local
Find 323 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTCTTTGGTTTCTCTTAAT+TGG | 0.103523 | tig0026376:-11759 | Msa1428550:CDS |
| TGTATCCAACCTTTGAATTT+TGG | 0.142752 | tig0026376:-13973 | Msa1428550:five_prime_UTR |
| CAAAGTCTTGGTGTAGTTTA+TGG | 0.148191 | tig0026376:-12938 | Msa1428550:CDS |
| TTGCTCCAATTGTTCTTCTT+TGG | 0.191203 | tig0026376:-11773 | Msa1428550:CDS |
| ACAAGGAACCGCTCTTCTTC+TGG | 0.211812 | tig0026376:+9806 | None:intergenic |
| CGCAACTTCATTAAGCAATA+TGG | 0.218556 | tig0026376:-9558 | Msa1428550:CDS |
| TACAGATGAGACTGGAAAAT+TGG | 0.262617 | tig0026376:+11464 | None:intergenic |
| GACAACACTGCTGATGATTT+TGG | 0.271661 | tig0026376:-10230 | Msa1428550:CDS |
| AGATATCAATTGGATTCTTA+TGG | 0.280779 | tig0026376:-10994 | Msa1428550:CDS |
| ATTCTTATTCTTGTCCTTGT+TGG | 0.300340 | tig0026376:-12224 | Msa1428550:CDS |
| GTTGGCACCTGCATGGTAAT+TGG | 0.309863 | tig0026376:-12206 | Msa1428550:CDS |
| GGAATCTTGCTTAGCATAAC+AGG | 0.312685 | tig0026376:-11618 | Msa1428550:intron |
| TTTCGGTGTGTGGCACGATA+TGG | 0.313289 | tig0026376:-9752 | Msa1428550:CDS |
| TTCTGGACAGGCTGCATATC+TGG | 0.318775 | tig0026376:-11394 | Msa1428550:CDS |
| TGGTGTAGTTTATGGAGATT+TGG | 0.318941 | tig0026376:-12930 | Msa1428550:CDS |
| TACCATAAGCATTTCCAATC+TGG | 0.319429 | tig0026376:+10931 | None:intergenic |
| GTTATGTATGTTTGGCATTA+CGG | 0.321291 | tig0026376:-10055 | Msa1428550:CDS |
| AAAGTAACATTCACATTTGT+TGG | 0.321493 | tig0026376:+9491 | None:intergenic |
| TTCTGATTGTTATGTATGTT+TGG | 0.323587 | tig0026376:-10063 | Msa1428550:CDS |
| CAAAGGCAGTATGTGGGATT+TGG | 0.324729 | tig0026376:-13220 | Msa1428550:CDS |
| ATTATATATATGCATTTCTT+AGG | 0.326736 | tig0026376:-9325 | Msa1428550:CDS |
| ATCTGCAACTCTGCACAAAA+TGG | 0.328508 | tig0026376:+9158 | None:intergenic |
| TGGGCTCCCCTTGCAATTGC+CGG | 0.334267 | tig0026376:-10091 | Msa1428550:CDS |
| TTTCTCTTAATTGGAGGTAT+AGG | 0.338505 | tig0026376:-11750 | Msa1428550:CDS |
| GACACGGACTAGTCCTAAAC+TGG | 0.341327 | tig0026376:+9964 | None:intergenic |
| ATTTACAACTTGTGGAGATT+TGG | 0.344580 | tig0026376:-11726 | Msa1428550:CDS |
| TAATATTCTTATATTACATT+TGG | 0.346619 | tig0026376:+9068 | None:intergenic |
| ATAAGAATCCAATTGATATC+TGG | 0.358226 | tig0026376:+10996 | None:intergenic |
| GTCTCAATGGCATGGATTCT+CGG | 0.361185 | tig0026376:-9995 | Msa1428550:CDS |
| GTTGCTGTTGTAATATTAGT+TGG | 0.362180 | tig0026376:-11843 | Msa1428550:CDS |
| CTATGCATTGCTGTTACTGC+TGG | 0.364513 | tig0026376:-10969 | Msa1428550:CDS |
| ATTCTTACCCCAGCTATATC+TGG | 0.365173 | tig0026376:-12176 | Msa1428550:intron |
| CTCGGGCTCGGTCCCAGTTT+AGG | 0.365770 | tig0026376:-9977 | Msa1428550:CDS |
| ACCCAGATTGGAAATGCTTA+TGG | 0.368806 | tig0026376:-10933 | Msa1428550:intron |
| GGTGTAGTTTATGGAGATTT+GGG | 0.370924 | tig0026376:-12929 | Msa1428550:CDS |
| TGATATCTGGAATATATATC+TGG | 0.375019 | tig0026376:+11009 | None:intergenic |
| TGCGCTGTTGCTGCTACGAC+TGG | 0.377903 | tig0026376:-12966 | Msa1428550:CDS |
| ATTTCTGAGCCTTCCTGCTT+CGG | 0.381713 | tig0026376:+13170 | None:intergenic |
| TATATATTCCAGATATCAAT+TGG | 0.383953 | tig0026376:-11004 | Msa1428550:CDS |
| TCTCTCGACTGTTCGGTTTG+CGG | 0.388246 | tig0026376:+9605 | None:intergenic |
| CAAGGAACCGCTCTTCTTCT+GGG | 0.399865 | tig0026376:+9807 | None:intergenic |
| AGCATACCGCTATCAACTTC+GGG | 0.405710 | tig0026376:+12001 | None:intergenic |
| AGAAACCAAAGAAGAACAAT+TGG | 0.406944 | tig0026376:+11768 | None:intergenic |
| CAGCCGATGGATGCCGAAGC+AGG | 0.412078 | tig0026376:-13183 | Msa1428550:CDS |
| CTTTGGTTTCTCTTAATTGG+AGG | 0.412681 | tig0026376:-11756 | Msa1428550:CDS |
| CGGTTCCTTGTCAAGCGTAT+TGG | 0.412864 | tig0026376:-9794 | Msa1428550:CDS |
| ACACAGTTGTGAGGGCTAGT+AGG | 0.413822 | tig0026376:-9379 | Msa1428550:CDS |
| TGTGTTATAGAAAACGTATA+AGG | 0.415069 | tig0026376:+12898 | None:intergenic |
| GTGTAGACTAGGCCGATTCC+AGG | 0.418903 | tig0026376:+9941 | None:intergenic |
| TATGCACAACTTTGACTCTT+GGG | 0.428719 | tig0026376:+11051 | None:intergenic |
| ACCATAAGCATTTCCAATCT+GGG | 0.433990 | tig0026376:+10932 | None:intergenic |
| GATAGTTGGCTTTCCCTTGG+TGG | 0.434983 | tig0026376:-11639 | Msa1428550:CDS |
| CTGCTTCGGCATCCATCGGC+TGG | 0.435634 | tig0026376:+13184 | None:intergenic |
| AATCATCGTCTTTCTTATGT+AGG | 0.436346 | tig0026376:+9720 | None:intergenic |
| GTATGCACAACTTTGACTCT+TGG | 0.445224 | tig0026376:+11050 | None:intergenic |
| TATTAGTTTGGCACTGCCAT+TGG | 0.448736 | tig0026376:-10201 | Msa1428550:CDS |
| TAAAACGCAAAGATGGTTAG+AGG | 0.450746 | tig0026376:-12270 | Msa1428550:CDS |
| TCAAAATCGATCAAGGTGGC+TGG | 0.452735 | tig0026376:-10111 | Msa1428550:CDS |
| TCTCAATGGCATGGATTCTC+GGG | 0.453151 | tig0026376:-9994 | Msa1428550:CDS |
| GCTGGTGTTGTTCACATACT+AGG | 0.453676 | tig0026376:-9404 | Msa1428550:CDS |
| TCATCAGTACGATGCTGGTT+GGG | 0.455801 | tig0026376:+12344 | None:intergenic |
| TTAAACAGCTGTAGAGAAGC+TGG | 0.458023 | tig0026376:-9422 | Msa1428550:CDS |
| ACTTCTCATGGAAGGTAGTC+CGG | 0.459359 | tig0026376:+12303 | None:intergenic |
| CACAGTTGTGAGGGCTAGTA+GGG | 0.463144 | tig0026376:-9378 | Msa1428550:CDS |
| TGCAGTTGTGTTAGTCATGC+TGG | 0.464198 | tig0026376:-10254 | Msa1428550:CDS |
| GATGATCCGGAGAAAGTGAT+TGG | 0.464873 | tig0026376:-12860 | Msa1428550:CDS |
| CATGAAATCTCTCGACTGTT+CGG | 0.470466 | tig0026376:+9598 | None:intergenic |
| AAGAACCAAAATTCAAAGGT+TGG | 0.478709 | tig0026376:+13968 | None:intergenic |
| ACATTTGTTGGTGATCTAGC+AGG | 0.481805 | tig0026376:+9503 | None:intergenic |
| TACAACTTGTGGAGATTTGG+TGG | 0.485551 | tig0026376:-11723 | Msa1428550:CDS |
| ATTCTCGTTGTTGTGTTCAC+CGG | 0.486407 | tig0026376:-10178 | Msa1428550:CDS |
| CTATTCAGCATACAACGTTA+TGG | 0.487468 | tig0026376:-11819 | Msa1428550:CDS |
| TTATTGAATCAAGTTCGAAA+TGG | 0.490711 | tig0026376:-13277 | Msa1428550:exon |
| TCCTCGTGGAGTTGATGATC+CGG | 0.491615 | tig0026376:-12873 | Msa1428550:CDS |
| TTGCTGCTAAAACGCAAAGA+TGG | 0.491927 | tig0026376:-12277 | Msa1428550:CDS |
| TTAGGACTAGTCCGTGTCCC+TGG | 0.492338 | tig0026376:-9959 | Msa1428550:CDS |
| TAGCAGCAAATGACTTCTCA+TGG | 0.492401 | tig0026376:+12291 | None:intergenic |
| GAGCATACCGCTATCAACTT+CGG | 0.495328 | tig0026376:+12000 | None:intergenic |
| AGAGCTCCAATCACTTTCTC+CGG | 0.496201 | tig0026376:+12854 | None:intergenic |
| AAAGATAGTTGGCTTTCCCT+TGG | 0.497018 | tig0026376:-11642 | Msa1428550:CDS |
| AGCGTTGCAATTACAAATAC+CGG | 0.499486 | tig0026376:+11152 | None:intergenic |
| CGAGCCGAACAAACATGAAA+AGG | 0.499984 | tig0026376:+9675 | None:intergenic |
| ATGATAACAAAGGCAGTATG+TGG | 0.504003 | tig0026376:-13227 | Msa1428550:CDS |
| TGAGGAAGAGAAAATCAAGT+AGG | 0.504167 | tig0026376:+14052 | None:intergenic |
| CACCGGCTTATCATTGATTG+TGG | 0.505639 | tig0026376:-10161 | Msa1428550:CDS |
| CTAGTCCGTGTCCCTGGAAT+CGG | 0.505874 | tig0026376:-9953 | Msa1428550:CDS |
| GTGTTATAGAAAACGTATAA+GGG | 0.507909 | tig0026376:+12899 | None:intergenic |
| ATGGCATGGATTCTCGGGCT+CGG | 0.509081 | tig0026376:-9989 | Msa1428550:CDS |
| GACTGGAAAATTGGCTAAGT+CGG | 0.509630 | tig0026376:+11473 | None:intergenic |
| ATCTGCTGCTGGTGGCATCA+AGG | 0.516150 | tig0026376:-12032 | Msa1428550:CDS |
| GTCCATGATGGAAGGTTGCT+CGG | 0.516565 | tig0026376:-9651 | Msa1428550:CDS |
| AACAAGGACAAGAATAAGAA+TGG | 0.518388 | tig0026376:+12226 | None:intergenic |
| TCTTCTGGGACTGTGTAGAC+AGG | 0.518745 | tig0026376:+9821 | None:intergenic |
| GAAAACATACCAGATATAGC+TGG | 0.518840 | tig0026376:+12167 | None:intergenic |
| CTTCCTGCTTCGGCATCCAT+CGG | 0.521217 | tig0026376:+13180 | None:intergenic |
| TTTCACCTCTCTACGTGTAT+CGG | 0.523357 | tig0026376:-11683 | Msa1428550:CDS |
| GTCCAGAATATGCTAAAAGA+AGG | 0.523525 | tig0026376:+11409 | None:intergenic |
| ATTAAGCAAGCCCTTGCTCA+TGG | 0.527966 | tig0026376:-11080 | Msa1428550:CDS |
| GCTCTTCATCAGTACGATGC+TGG | 0.528803 | tig0026376:+12339 | None:intergenic |
| CAAAATCGATCAAGGTGGCT+GGG | 0.532334 | tig0026376:-10110 | Msa1428550:CDS |
| ATCCGAGCAACCTTCCATCA+TGG | 0.532977 | tig0026376:+9649 | None:intergenic |
| GAGACGGAGGCAAAGATAGT+TGG | 0.533135 | tig0026376:-11653 | Msa1428550:CDS |
| ATTGCATAGCAAAGTCTCAA+TGG | 0.534181 | tig0026376:-10008 | Msa1428550:CDS |
| TAATGAAATGAGAAAATATG+TGG | 0.534737 | tig0026376:+9897 | None:intergenic |
| GAAATACTCCGGCAATTGCA+AGG | 0.535693 | tig0026376:+10083 | None:intergenic |
| TGTCCTTGTTGGCACCTGCA+TGG | 0.536605 | tig0026376:-12213 | Msa1428550:CDS |
| AAAACATACCAGATATAGCT+GGG | 0.539177 | tig0026376:+12168 | None:intergenic |
| GTACTCTTCAAAATCGATCA+AGG | 0.539760 | tig0026376:-10118 | Msa1428550:CDS |
| TTCATCAGTACGATGCTGGT+TGG | 0.539824 | tig0026376:+12343 | None:intergenic |
| GCAACTCTGCACAAAATGGC+AGG | 0.545446 | tig0026376:+9162 | None:intergenic |
| TTGAAAGAACCAAAATTCAA+AGG | 0.548424 | tig0026376:+13964 | None:intergenic |
| TGAAAAGGTTGCGGTGATTG+TGG | 0.548496 | tig0026376:+11106 | None:intergenic |
| GCAATTTGTACAGATGAGAC+TGG | 0.550134 | tig0026376:+11456 | None:intergenic |
| TTCCACAATCAATGATAAGC+CGG | 0.550969 | tig0026376:+10159 | None:intergenic |
| GGCTTGCTTAATGATTGAAA+AGG | 0.551030 | tig0026376:+11091 | None:intergenic |
| ACCGTCTCCAATTACCATGC+AGG | 0.552669 | tig0026376:+12199 | None:intergenic |
| CTTAATGATTGAAAAGGTTG+CGG | 0.555230 | tig0026376:+11097 | None:intergenic |
| CGACTGGCATATCAAAGTCT+TGG | 0.555965 | tig0026376:-12950 | Msa1428550:CDS |
| CATACATCAAAGAAATTCCT+CGG | 0.556726 | tig0026376:-11032 | Msa1428550:CDS |
| GTATAGGTATTTACAACTTG+TGG | 0.557069 | tig0026376:-11734 | Msa1428550:CDS |
| ATACACGTAGAGAGGTGAAA+AGG | 0.557618 | tig0026376:+11686 | None:intergenic |
| TGTTCGGCTCGAGTCCATGA+TGG | 0.562025 | tig0026376:-9663 | Msa1428550:CDS |
| GTCTACACAGAGCTTGCAAG+TGG | 0.564596 | tig0026376:-9926 | Msa1428550:CDS |
| CTGGAATATATATCTGGCCG+AGG | 0.565446 | tig0026376:+11015 | None:intergenic |
| TTGGGAAACATCCATGAGCA+AGG | 0.566397 | tig0026376:+11069 | None:intergenic |
| CACGAGAGTCTGTTAAATGT+TGG | 0.570415 | tig0026376:-9263 | Msa1428550:CDS |
| ACAACAACGGAATGGATCGC+TGG | 0.570518 | tig0026376:+9866 | None:intergenic |
| ATTTGCATGTCGGCAGAGCA+AGG | 0.572919 | tig0026376:+12379 | None:intergenic |
| GATTTCATGTTGAATAACAA+TGG | 0.574262 | tig0026376:-9584 | Msa1428550:CDS |
| AGGTTGCGGTGATTGTGGCT+TGG | 0.574303 | tig0026376:+11111 | None:intergenic |
| TTGCAAGCTCTGTGTAGACT+AGG | 0.574990 | tig0026376:+9930 | None:intergenic |
| AAATACTCCGGCAATTGCAA+GGG | 0.576131 | tig0026376:+10084 | None:intergenic |
| TTCTCTTCATCAATCTCTAA+CGG | 0.581968 | tig0026376:+13249 | None:intergenic |
| CAACGGAATGGATCGCTGGT+AGG | 0.584685 | tig0026376:+9870 | None:intergenic |
| AAACGAAAACAACAACGGAA+TGG | 0.585282 | tig0026376:+9858 | None:intergenic |
| GAATATGCTAAAAGAAGGCA+AGG | 0.585635 | tig0026376:+11414 | None:intergenic |
| TGTTACAGGAGTAGTTGTGC+TGG | 0.586547 | tig0026376:-11865 | Msa1428550:intron |
| ATGGTACAGATAGAGTTGGT+TGG | 0.587725 | tig0026376:-11800 | Msa1428550:CDS |
| CATAACAATCAGAAATACTC+CGG | 0.589596 | tig0026376:+10072 | None:intergenic |
| CGATGGATGCCGAAGCAGGA+AGG | 0.589706 | tig0026376:-13179 | Msa1428550:CDS |
| ACAAATTGCATTTACTCTCG+TGG | 0.590570 | tig0026376:-11442 | Msa1428550:CDS |
| AGCAAATGACTTCTCATGGA+AGG | 0.591944 | tig0026376:+12295 | None:intergenic |
| ACTTATGTGTCACAAGTACC+AGG | 0.592417 | tig0026376:-13926 | Msa1428550:five_prime_UTR |
| ACCTGCATGGTAATTGGAGA+CGG | 0.592539 | tig0026376:-12200 | Msa1428550:CDS |
| TTCTATAACACATTTCCTCG+TGG | 0.594788 | tig0026376:-12887 | Msa1428550:CDS |
| CTATGGAGCAGGTGGAACGC+TGG | 0.596080 | tig0026376:-12411 | Msa1428550:intron |
| CGTTATGGTACAGATAGAGT+TGG | 0.598043 | tig0026376:-11804 | Msa1428550:CDS |
| AGAGCAAACGACAATGGTCA+AGG | 0.601997 | tig0026376:-12770 | Msa1428550:intron |
| GTATGTTTGGCATTACGGAA+CGG | 0.603324 | tig0026376:-10050 | Msa1428550:CDS |
| AAGAGCTGACAACATATAGC+CGG | 0.606530 | tig0026376:-12322 | Msa1428550:CDS |
| CGGCTCGAGTCCATGATGGA+AGG | 0.608365 | tig0026376:-9659 | Msa1428550:CDS |
| ACCTTACCTATAAAACAACC+TGG | 0.611231 | tig0026376:+13908 | None:intergenic |
| ACAGAAACTTGACCAGCCGA+TGG | 0.619273 | tig0026376:-13196 | Msa1428550:CDS |
| TGGGAAACATCCATGAGCAA+GGG | 0.620410 | tig0026376:+11070 | None:intergenic |
| GCTAAGCAAGATTCCACCAA+GGG | 0.622974 | tig0026376:+11626 | None:intergenic |
| ACTAGGAAACACAGTTGTGA+GGG | 0.624736 | tig0026376:-9387 | Msa1428550:CDS |
| CTAGGCCGATTCCAGGGACA+CGG | 0.628200 | tig0026376:+9948 | None:intergenic |
| GATGAAGAGAATGATAACAA+AGG | 0.628489 | tig0026376:-13237 | Msa1428550:CDS |
| TGTAGACTAGGCCGATTCCA+GGG | 0.629843 | tig0026376:+9942 | None:intergenic |
| TCGGTCCAATACGCTTGACA+AGG | 0.632001 | tig0026376:+9789 | None:intergenic |
| TACTAGGAAACACAGTTGTG+AGG | 0.636832 | tig0026376:-9388 | Msa1428550:CDS |
| TGATAACAAAGGCAGTATGT+GGG | 0.638051 | tig0026376:-13226 | Msa1428550:CDS |
| GACACAAACGAAAACAACAA+CGG | 0.645561 | tig0026376:+9853 | None:intergenic |
| ATAGCAAAGTCTCAATGGCA+TGG | 0.650531 | tig0026376:-10003 | Msa1428550:CDS |
| AATGAAATGAGAAAATATGT+GGG | 0.652566 | tig0026376:+9898 | None:intergenic |
| TTACCATGCAGGTGCCAACA+AGG | 0.653082 | tig0026376:+12210 | None:intergenic |
| AATACTCCGGCAATTGCAAG+GGG | 0.655579 | tig0026376:+10085 | None:intergenic |
| ATAACAAACCTGGAATAGAA+CGG | 0.658427 | tig0026376:+11337 | None:intergenic |
| GTGTATCGGTATCTAAGAGA+CGG | 0.666148 | tig0026376:-11669 | Msa1428550:CDS |
| AGATACCGATACACGTAGAG+AGG | 0.668284 | tig0026376:+11678 | None:intergenic |
| ATGAAAACGTATTTGAGCAG+CGG | 0.669648 | tig0026376:+12800 | None:intergenic |
| AACAAACCCGAAGTTGATAG+CGG | 0.675102 | tig0026376:-12007 | Msa1428550:intron |
| GTATTAAGAGCAAACGACAA+TGG | 0.678001 | tig0026376:-12776 | Msa1428550:CDS |
| ACACAACAACGAGAATCCAA+TGG | 0.682411 | tig0026376:+10185 | None:intergenic |
| TGCTAAGCAAGATTCCACCA+AGG | 0.701088 | tig0026376:+11625 | None:intergenic |
| ACACGGACTAGTCCTAAACT+GGG | 0.702716 | tig0026376:+9965 | None:intergenic |
| ATGAAATGAGAAAATATGTG+GGG | 0.706454 | tig0026376:+9899 | None:intergenic |
| ACATTTAACAGACTCTCGTG+AGG | 0.708976 | tig0026376:+9266 | None:intergenic |
| ACACAGTCCCAGAAGAAGAG+CGG | 0.710327 | tig0026376:-9814 | Msa1428550:CDS |
| AAACATACCAGATATAGCTG+GGG | 0.711575 | tig0026376:+12169 | None:intergenic |
| TATCGGTATCTAAGAGACGG+AGG | 0.713726 | tig0026376:-11666 | Msa1428550:CDS |
| CTCTTCAAAATCGATCAAGG+TGG | 0.740278 | tig0026376:-10115 | Msa1428550:CDS |
| TCCGGATCATCAACTCCACG+AGG | 0.743190 | tig0026376:+12872 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATATTATAAATTTTTTTTTT+TGG | - | tig0026376:14060-14079 | Msa1428550:five_prime_UTR | 0.0% |
| !!! | TTCTTATTAATAAAAAGTTT+TGG | - | tig0026376:9383-9402 | Msa1428550:CDS | 10.0% |
| !! | AAAAAAAAACATGAAAAAAA+TGG | + | tig0026376:12214-12233 | None:intergenic | 10.0% |
| !! | AAGAAATAAATTTATTAGAA+GGG | - | tig0026376:12241-12260 | Msa1428550:CDS | 10.0% |
| !! | TAATATTCTTATATTACATT+TGG | + | tig0026376:14027-14046 | None:intergenic | 10.0% |
| !!! | TTTTTTTGAATTTTCATTTC+TGG | - | tig0026376:9239-9258 | Msa1428550:exon | 15.0% |
| !! | AAAATACAAGAAAAAAACAT+TGG | + | tig0026376:9759-9778 | None:intergenic | 15.0% |
| !! | GAAGAAATAAATTTATTAGA+AGG | - | tig0026376:12240-12259 | Msa1428550:CDS | 15.0% |
| !! | ATTATATATATGCATTTCTT+AGG | - | tig0026376:13767-13786 | Msa1428550:intron | 15.0% |
| !!! | TTTTTATACAAAGTAAAGAA+GGG | + | tig0026376:13884-13903 | None:intergenic | 15.0% |
| !!! | ATTTTTATACAAAGTAAAGA+AGG | + | tig0026376:13885-13904 | None:intergenic | 15.0% |
| !! | TCTATATTTCATGTTCTTAT+TGG | - | tig0026376:9323-9342 | Msa1428550:CDS | 20.0% |
| !!! | TTTTCTTGTATTTTTTGTGA+AGG | - | tig0026376:9765-9784 | Msa1428550:CDS | 20.0% |
| !!! | GAATTCTATTTTGTTTACAT+AGG | - | tig0026376:9999-10018 | Msa1428550:CDS | 20.0% |
| !!! | TGATTTTTATATTTGCATGT+CGG | + | tig0026376:10726-10745 | None:intergenic | 20.0% |
| !! | GTTGAAAAATTTCTACAAAA+AGG | + | tig0026376:11008-11027 | None:intergenic | 20.0% |
| !!! | TTAATGTATGTTAAAAGTGT+AGG | + | tig0026376:11117-11136 | None:intergenic | 20.0% |
| !! | AAATTATTTAATAAGGTGAG+CGG | - | tig0026376:11540-11559 | Msa1428550:intron | 20.0% |
| !! | TATATATTCCAGATATCAAT+TGG | - | tig0026376:12088-12107 | Msa1428550:intron | 20.0% |
| !! | ACATTGAAAATTTGCAATAT+AGG | - | tig0026376:12312-12331 | Msa1428550:CDS | 20.0% |
| !! | TAATCATTACGACATTAAAA+AGG | - | tig0026376:12338-12357 | Msa1428550:CDS | 20.0% |
| !! | AATCATTACGACATTAAAAA+GGG | - | tig0026376:12339-12358 | Msa1428550:CDS | 20.0% |
| !! | AATGAAATGAGAAAATATGT+GGG | + | tig0026376:13197-13216 | None:intergenic | 20.0% |
| !! | TAATGAAATGAGAAAATATG+TGG | + | tig0026376:13198-13217 | None:intergenic | 20.0% |
| !!! | TTTTATACAAAGTAAAGAAG+GGG | + | tig0026376:13883-13902 | None:intergenic | 20.0% |
| !!! | TTTTAGTTCGGTTATTTTTG+AGG | + | tig0026376:9061-9080 | None:intergenic | 25.0% |
| !!! | GTAACAAACTTGTTTTAGTT+CGG | + | tig0026376:9073-9092 | None:intergenic | 25.0% |
| ! | TTGAAAGAACCAAAATTCAA+AGG | + | tig0026376:9131-9150 | None:intergenic | 25.0% |
| ! | TTATAAGTTCAAACTCTTAC+CGG | + | tig0026376:9439-9458 | None:intergenic | 25.0% |
| !! | GTTTTATCTTTTAACCTGAA+GGG | - | tig0026376:9499-9518 | Msa1428550:CDS | 25.0% |
| !! | CAATTCACAAATTTTCTCTA+AGG | + | tig0026376:9540-9559 | None:intergenic | 25.0% |
| ! | TTATTGAATCAAGTTCGAAA+TGG | - | tig0026376:9815-9834 | Msa1428550:CDS | 25.0% |
| ! | GAATTCAGAAAAAGCAAAAA+TGG | + | tig0026376:9985-10004 | None:intergenic | 25.0% |
| ! | GTGTTATAGAAAACGTATAA+GGG | + | tig0026376:10196-10215 | None:intergenic | 25.0% |
| ! | TGTGTTATAGAAAACGTATA+AGG | + | tig0026376:10197-10216 | None:intergenic | 25.0% |
| !!! | TTGTTTTTCAGAAGCTATTT+TGG | - | tig0026376:10489-10508 | Msa1428550:intron | 25.0% |
| ! | AAAGGAAAGTCAAAAATGAA+AGG | + | tig0026376:10990-11009 | None:intergenic | 25.0% |
| ! | CTATAATCTCATATACATAG+TGG | + | tig0026376:11153-11172 | None:intergenic | 25.0% |
| !!! | ATAGTTTCGAGTTTTTTCAT+TGG | - | tig0026376:11169-11188 | Msa1428550:CDS | 25.0% |
| !! | CAATGATTTTTATCTGTTAG+AGG | - | tig0026376:11883-11902 | Msa1428550:intron | 25.0% |
| !! | TGATATCTGGAATATATATC+TGG | + | tig0026376:12086-12105 | None:intergenic | 25.0% |
| ! | ATAAGAATCCAATTGATATC+TGG | + | tig0026376:12099-12118 | None:intergenic | 25.0% |
| ! | AGATATCAATTGGATTCTTA+TGG | - | tig0026376:12098-12117 | Msa1428550:intron | 25.0% |
| ! | TTTAAAAATCAAACCCAGAT+TGG | - | tig0026376:12147-12166 | Msa1428550:intron | 25.0% |
| ! | CAATGTAAAGAAATTAGGAA+AGG | + | tig0026376:12365-12384 | None:intergenic | 25.0% |
| ! | TCCTAATTTCTTTACATTGA+AGG | - | tig0026376:12366-12385 | Msa1428550:CDS | 25.0% |
| ! | CCTAATTTCTTTACATTGAA+GGG | - | tig0026376:12367-12386 | Msa1428550:CDS | 25.0% |
| ! | TCCATCATATTATTTAGTAC+AGG | - | tig0026376:12535-12554 | Msa1428550:intron | 25.0% |
| ! | ACCTGTACTAAATAATATGA+TGG | + | tig0026376:12539-12558 | None:intergenic | 25.0% |
| !! | AGAAAAAGTGTAACGTAATT+AGG | - | tig0026376:12562-12581 | Msa1428550:intron | 25.0% |
| !! | GAAAAAGTGTAACGTAATTA+GGG | - | tig0026376:12563-12582 | Msa1428550:intron | 25.0% |
| !! | AAAAAGTGTAACGTAATTAG+GGG | - | tig0026376:12564-12583 | Msa1428550:intron | 25.0% |
| ! | TAATGCAGCTGAAAATTTAA+AGG | - | tig0026376:12607-12626 | Msa1428550:intron | 25.0% |
| ! | AATGCAGCTGAAAATTTAAA+GGG | - | tig0026376:12608-12627 | Msa1428550:intron | 25.0% |
| ! | AAATAGGATCCTATAAAAGT+GGG | - | tig0026376:12652-12671 | Msa1428550:intron | 25.0% |
| !!! | ATCATATATCCCACTTTTAT+AGG | + | tig0026376:12664-12683 | None:intergenic | 25.0% |
| ! | AATAGCTGAACATAACTAAA+CGG | - | tig0026376:12710-12729 | Msa1428550:intron | 25.0% |
| ! | AATGATCTAGTATATCTTCT+TGG | + | tig0026376:12746-12765 | None:intergenic | 25.0% |
| ! | AGTTCTTAAACTTTGTTAAC+TGG | + | tig0026376:12771-12790 | None:intergenic | 25.0% |
| !! | TTTTGGTCATGATATTAGTT+TGG | - | tig0026376:12879-12898 | Msa1428550:CDS | 25.0% |
| ! | TTCTGATTGTTATGTATGTT+TGG | - | tig0026376:13029-13048 | Msa1428550:intron | 25.0% |
| ! | ATGAAATGAGAAAATATGTG+GGG | + | tig0026376:13196-13215 | None:intergenic | 25.0% |
| ! | AAAGTAACATTCACATTTGT+TGG | + | tig0026376:13604-13623 | None:intergenic | 25.0% |
| !! | AATTCAGATTTTATGTGTAC+AGG | - | tig0026376:13974-13993 | Msa1428550:five_prime_UTR | 25.0% |
| ! | TGTATCCAACCTTTGAATTT+TGG | - | tig0026376:9119-9138 | Msa1428550:three_prime_UTR | 30.0% |
| AAGAACCAAAATTCAAAGGT+TGG | + | tig0026376:9127-9146 | None:intergenic | 30.0% | |
| !!! | TAAAAAGTTTTGGTGATGTG+TGG | - | tig0026376:9393-9412 | Msa1428550:CDS | 30.0% |
| !! | AACTATGTCACTTTAGTTTG+AGG | + | tig0026376:9462-9481 | None:intergenic | 30.0% |
| !! | GGTTTTATCTTTTAACCTGA+AGG | - | tig0026376:9498-9517 | Msa1428550:CDS | 30.0% |
| ! | TTTTATTCAGATTGCAGAAG+AGG | + | tig0026376:9598-9617 | None:intergenic | 30.0% |
| GCAATCTGAATAAAAAGATC+AGG | - | tig0026376:9603-9622 | Msa1428550:CDS | 30.0% | |
| CGAGTTTCAAGAAAAAATTC+AGG | + | tig0026376:9651-9670 | None:intergenic | 30.0% | |
| !!! | TCTTGAAACTCGTTTTGAAA+TGG | - | tig0026376:9659-9678 | Msa1428550:CDS | 30.0% |
| TTCTCTTCATCAATCTCTAA+CGG | + | tig0026376:9846-9865 | None:intergenic | 30.0% | |
| GATGAAGAGAATGATAACAA+AGG | - | tig0026376:9855-9874 | Msa1428550:CDS | 30.0% | |
| ! | TGTATTGTTTTCCAACTGTT+TGG | - | tig0026376:10347-10366 | Msa1428550:intron | 30.0% |
| TTCCAACTGTTTGGTTAATT+TGG | - | tig0026376:10356-10375 | Msa1428550:intron | 30.0% | |
| ATCCAAATTAACCAAACAGT+TGG | + | tig0026376:10361-10380 | None:intergenic | 30.0% | |
| ! | AACTGTTTGGTTAATTTGGA+TGG | - | tig0026376:10360-10379 | Msa1428550:intron | 30.0% |
| GCCTTTAGCATTTATTGAAT+CGG | - | tig0026376:10441-10460 | Msa1428550:intron | 30.0% | |
| ! | ACCGATTCAATAAATGCTAA+AGG | + | tig0026376:10445-10464 | None:intergenic | 30.0% |
| ! | TTACAATGACTTTGTTTGAG+TGG | + | tig0026376:10614-10633 | None:intergenic | 30.0% |
| TTTAACCAAGCTTACATCTA+TGG | - | tig0026376:10664-10683 | Msa1428550:intron | 30.0% | |
| AACAAGGACAAGAATAAGAA+TGG | + | tig0026376:10869-10888 | None:intergenic | 30.0% | |
| ATTCTTATTCTTGTCCTTGT+TGG | - | tig0026376:10868-10887 | Msa1428550:intron | 30.0% | |
| AAAACATACCAGATATAGCT+GGG | + | tig0026376:10927-10946 | None:intergenic | 30.0% | |
| ! | ATATCTGGTATGTTTTCTGT+CGG | - | tig0026376:10931-10950 | Msa1428550:intron | 30.0% |
| GGAGGAACTAACAAATAAAT+AGG | + | tig0026376:10969-10988 | None:intergenic | 30.0% | |
| ! | GTTGCTGTTGTAATATTAGT+TGG | - | tig0026376:11249-11268 | Msa1428550:intron | 30.0% |
| AGAAACCAAAGAAGAACAAT+TGG | + | tig0026376:11327-11346 | None:intergenic | 30.0% | |
| ! | CTTCTTTGGTTTCTCTTAAT+TGG | - | tig0026376:11333-11352 | Msa1428550:intron | 30.0% |
| ! | TTTCTCTTAATTGGAGGTAT+AGG | - | tig0026376:11342-11361 | Msa1428550:intron | 30.0% |
| GTATAGGTATTTACAACTTG+TGG | - | tig0026376:11358-11377 | Msa1428550:CDS | 30.0% | |
| ATTTACAACTTGTGGAGATT+TGG | - | tig0026376:11366-11385 | Msa1428550:CDS | 30.0% | |
| ATAACAAACCTGGAATAGAA+CGG | + | tig0026376:11758-11777 | None:intergenic | 30.0% | |
| AAAATCATTGCATGAAGACA+GGG | + | tig0026376:11873-11892 | None:intergenic | 30.0% | |
| AAAAATCATTGCATGAAGAC+AGG | + | tig0026376:11874-11893 | None:intergenic | 30.0% | |
| GTTCTGCAGAAAAAATATAC+TGG | - | tig0026376:11917-11936 | Msa1428550:intron | 30.0% | |
| CTTAATGATTGAAAAGGTTG+CGG | + | tig0026376:11998-12017 | None:intergenic | 30.0% | |
| CATACATCAAAGAAATTCCT+CGG | - | tig0026376:12060-12079 | Msa1428550:intron | 30.0% | |
| AGAGATAAAATGCAACTTGT+AGG | - | tig0026376:12264-12283 | Msa1428550:CDS | 30.0% | |
| CCCTTCAATGTAAAGAAATT+AGG | + | tig0026376:12370-12389 | None:intergenic | 30.0% | |
| ! | TAACGTAATTAGGGGTATAT+TGG | - | tig0026376:12572-12591 | Msa1428550:intron | 30.0% |
| ATGCAGCTGAAAATTTAAAG+GGG | - | tig0026376:12609-12628 | Msa1428550:intron | 30.0% | |
| GAAATAGGATCCTATAAAAG+TGG | - | tig0026376:12651-12670 | Msa1428550:intron | 30.0% | |
| GAATTTATCCTTGTAATGAC+AGG | - | tig0026376:12812-12831 | Msa1428550:CDS | 30.0% | |
| ! | TGTGGAATGCACATATTTTT+CGG | - | tig0026376:12949-12968 | Msa1428550:CDS | 30.0% |
| CATAACAATCAGAAATACTC+CGG | + | tig0026376:13023-13042 | None:intergenic | 30.0% | |
| GTTATGTATGTTTGGCATTA+CGG | - | tig0026376:13037-13056 | Msa1428550:intron | 30.0% | |
| CGAAAAATGTGGTAATTCTT+CGG | + | tig0026376:13325-13344 | None:intergenic | 30.0% | |
| ! | CGAAGAATTACCACATTTTT+CGG | - | tig0026376:13323-13342 | Msa1428550:intron | 30.0% |
| AATCATCGTCTTTCTTATGT+AGG | + | tig0026376:13375-13394 | None:intergenic | 30.0% | |
| ! | ACAACCTTTTCATGTTTGTT+CGG | - | tig0026376:13413-13432 | Msa1428550:intron | 30.0% |
| TGAGGAAGAGAAAATCAAGT+AGG | + | tig0026376:9043-9062 | None:intergenic | 35.0% | |
| !! | CAAGTACCAGGTTGTTTTAT+AGG | - | tig0026376:9178-9197 | Msa1428550:three_prime_UTR | 35.0% |
| !! | ACCAGGTTGTTTTATAGGTA+AGG | - | tig0026376:9183-9202 | Msa1428550:three_prime_UTR | 35.0% |
| ACCTTACCTATAAAACAACC+TGG | + | tig0026376:9187-9206 | None:intergenic | 35.0% | |
| TGACATAGTTCAAATTCCCT+CGG | - | tig0026376:9472-9491 | Msa1428550:CDS | 35.0% | |
| !!! | GTTTTGAAATGGAAGTCAAC+AGG | - | tig0026376:9670-9689 | Msa1428550:CDS | 35.0% |
| !!! | CAGGTTCTTTTTTGAAACCT+TGG | - | tig0026376:9689-9708 | Msa1428550:CDS | 35.0% |
| ! | TTTGAAACCTTGGTTTGACT+TGG | - | tig0026376:9699-9718 | Msa1428550:CDS | 35.0% |
| !! | GAAGGTACCAAAAAGAACTT+AGG | - | tig0026376:9783-9802 | Msa1428550:CDS | 35.0% |
| ACCAAAAAGAACTTAGGAGT+TGG | - | tig0026376:9789-9808 | Msa1428550:CDS | 35.0% | |
| ! | TCCAACTCCTAAGTTCTTTT+TGG | + | tig0026376:9793-9812 | None:intergenic | 35.0% |
| ATGATAACAAAGGCAGTATG+TGG | - | tig0026376:9865-9884 | Msa1428550:CDS | 35.0% | |
| TGATAACAAAGGCAGTATGT+GGG | - | tig0026376:9866-9885 | Msa1428550:CDS | 35.0% | |
| ! | CAAAGTCTTGGTGTAGTTTA+TGG | - | tig0026376:10154-10173 | Msa1428550:CDS | 35.0% |
| TGGTGTAGTTTATGGAGATT+TGG | - | tig0026376:10162-10181 | Msa1428550:CDS | 35.0% | |
| GGTGTAGTTTATGGAGATTT+GGG | - | tig0026376:10163-10182 | Msa1428550:CDS | 35.0% | |
| TTCTATAACACATTTCCTCG+TGG | - | tig0026376:10205-10224 | Msa1428550:CDS | 35.0% | |
| ATGAAAACGTATTTGAGCAG+CGG | + | tig0026376:10295-10314 | None:intergenic | 35.0% | |
| GTATTAAGAGCAAACGACAA+TGG | - | tig0026376:10316-10335 | Msa1428550:intron | 35.0% | |
| !! | TGGTTAATTTGGATGGACTA+AGG | - | tig0026376:10367-10386 | Msa1428550:intron | 35.0% |
| TAAAACGCAAAGATGGTTAG+AGG | - | tig0026376:10822-10841 | Msa1428550:intron | 35.0% | |
| AAACATACCAGATATAGCTG+GGG | + | tig0026376:10926-10945 | None:intergenic | 35.0% | |
| GAAAACATACCAGATATAGC+TGG | + | tig0026376:10928-10947 | None:intergenic | 35.0% | |
| GGAAAGTCAAAAATGAAAGG+AGG | + | tig0026376:10987-11006 | None:intergenic | 35.0% | |
| CTATTCAGCATACAACGTTA+TGG | - | tig0026376:11273-11292 | Msa1428550:intron | 35.0% | |
| TTGCTCCAATTGTTCTTCTT+TGG | - | tig0026376:11319-11338 | Msa1428550:intron | 35.0% | |
| ! | CTTTGGTTTCTCTTAATTGG+AGG | - | tig0026376:11336-11355 | Msa1428550:intron | 35.0% |
| !!! | GTGAAAAGGCTTTTAAGACA+CGG | + | tig0026376:11395-11414 | None:intergenic | 35.0% |
| ! | AACTTGTGACGATTGATTTC+AGG | - | tig0026376:11579-11598 | Msa1428550:intron | 35.0% |
| ! | ACTTGTGACGATTGATTTCA+GGG | - | tig0026376:11580-11599 | Msa1428550:intron | 35.0% |
| TACAGATGAGACTGGAAAAT+TGG | + | tig0026376:11631-11650 | None:intergenic | 35.0% | |
| ACAAATTGCATTTACTCTCG+TGG | - | tig0026376:11650-11669 | Msa1428550:CDS | 35.0% | |
| GAATATGCTAAAAGAAGGCA+AGG | + | tig0026376:11681-11700 | None:intergenic | 35.0% | |
| ! | TGCCTTCTTTTAGCATATTC+TGG | - | tig0026376:11681-11700 | Msa1428550:CDS | 35.0% |
| GTCCAGAATATGCTAAAAGA+AGG | + | tig0026376:11686-11705 | None:intergenic | 35.0% | |
| ! | TCTTTTAGCATATTCTGGAC+AGG | - | tig0026376:11686-11705 | Msa1428550:CDS | 35.0% |
| TGTGACAGATATAACAAACC+TGG | + | tig0026376:11768-11787 | None:intergenic | 35.0% | |
| !! | TGCACTTTTGTTTCTTCATC+AGG | - | tig0026376:11829-11848 | Msa1428550:CDS | 35.0% |
| TGCAGAAAAAATATACTGGC+CGG | - | tig0026376:11921-11940 | Msa1428550:intron | 35.0% | |
| AGCGTTGCAATTACAAATAC+CGG | + | tig0026376:11943-11962 | None:intergenic | 35.0% | |
| ! | GGCTTGCTTAATGATTGAAA+AGG | + | tig0026376:12004-12023 | None:intergenic | 35.0% |
| TATGCACAACTTTGACTCTT+GGG | + | tig0026376:12044-12063 | None:intergenic | 35.0% | |
| ACCATAAGCATTTCCAATCT+GGG | + | tig0026376:12163-12182 | None:intergenic | 35.0% | |
| TACCATAAGCATTTCCAATC+TGG | + | tig0026376:12164-12183 | None:intergenic | 35.0% | |
| GATAAAATGCAACTTGTAGG+AGG | - | tig0026376:12267-12286 | Msa1428550:CDS | 35.0% | |
| AAACTTATCATCTCTCCTCA+AGG | + | tig0026376:12510-12529 | None:intergenic | 35.0% | |
| TGCAGCTGAAAATTTAAAGG+GGG | - | tig0026376:12610-12629 | Msa1428550:intron | 35.0% | |
| TTTAAAGGGGGCCTATAAAA+CGG | - | tig0026376:12622-12641 | Msa1428550:intron | 35.0% | |
| CATTACAAGGATAAATTCGC+TGG | + | tig0026376:12810-12829 | None:intergenic | 35.0% | |
| TTCCACAATCAATGATAAGC+CGG | + | tig0026376:12936-12955 | None:intergenic | 35.0% | |
| GTACTCTTCAAAATCGATCA+AGG | - | tig0026376:12974-12993 | Msa1428550:CDS | 35.0% | |
| ATTGCATAGCAAAGTCTCAA+TGG | - | tig0026376:13084-13103 | Msa1428550:intron | 35.0% | |
| AAACGAAAACAACAACGGAA+TGG | + | tig0026376:13237-13256 | None:intergenic | 35.0% | |
| GACACAAACGAAAACAACAA+CGG | + | tig0026376:13242-13261 | None:intergenic | 35.0% | |
| CGCAACTTCATTAAGCAATA+TGG | - | tig0026376:13534-13553 | Msa1428550:intron | 35.0% | |
| ACTTATGTGTCACAAGTACC+AGG | - | tig0026376:9166-9185 | Msa1428550:three_prime_UTR | 40.0% | |
| GTCACTCATTGAACTCTTTC+CGG | - | tig0026376:9417-9436 | Msa1428550:CDS | 40.0% | |
| AAAAGATAAAACCGCTCCGA+GGG | + | tig0026376:9491-9510 | None:intergenic | 40.0% | |
| TAAAAGATAAAACCGCTCCG+AGG | + | tig0026376:9492-9511 | None:intergenic | 40.0% | |
| AATTTGAACTTCGTCCCTTC+AGG | + | tig0026376:9516-9535 | None:intergenic | 40.0% | |
| TTGATGCAAGAGTAAGAGAG+TGG | - | tig0026376:10406-10425 | Msa1428550:intron | 40.0% | |
| AAGAGCTGACAACATATAGC+CGG | - | tig0026376:10770-10789 | Msa1428550:intron | 40.0% | |
| AGCAAATGACTTCTCATGGA+AGG | + | tig0026376:10800-10819 | None:intergenic | 40.0% | |
| TAGCAGCAAATGACTTCTCA+TGG | + | tig0026376:10804-10823 | None:intergenic | 40.0% | |
| TTGCTGCTAAAACGCAAAGA+TGG | - | tig0026376:10815-10834 | Msa1428550:intron | 40.0% | |
| ATTCTTACCCCAGCTATATC+TGG | - | tig0026376:10916-10935 | Msa1428550:intron | 40.0% | |
| !!! | GATGTAGTTTTATCTGCTGC+TGG | - | tig0026376:11049-11068 | Msa1428550:CDS | 40.0% |
| !! | AACAAACCCGAAGTTGATAG+CGG | - | tig0026376:11085-11104 | Msa1428550:CDS | 40.0% |
| ! | TTTTTCCCTTTTTTCCGCCA+TGG | - | tig0026376:11204-11223 | Msa1428550:intron | 40.0% |
| ! | TAACACCATGGCGGAAAAAA+GGG | + | tig0026376:11212-11231 | None:intergenic | 40.0% |
| CGTTATGGTACAGATAGAGT+TGG | - | tig0026376:11288-11307 | Msa1428550:intron | 40.0% | |
| ! | ATGGTACAGATAGAGTTGGT+TGG | - | tig0026376:11292-11311 | Msa1428550:intron | 40.0% |
| TACAACTTGTGGAGATTTGG+TGG | - | tig0026376:11369-11388 | Msa1428550:CDS | 40.0% | |
| ATACACGTAGAGAGGTGAAA+AGG | + | tig0026376:11409-11428 | None:intergenic | 40.0% | |
| TTTCACCTCTCTACGTGTAT+CGG | - | tig0026376:11409-11428 | Msa1428550:CDS | 40.0% | |
| ! | GTGTATCGGTATCTAAGAGA+CGG | - | tig0026376:11423-11442 | Msa1428550:CDS | 40.0% |
| !! | AAAGATAGTTGGCTTTCCCT+TGG | - | tig0026376:11450-11469 | Msa1428550:CDS | 40.0% |
| GGAATCTTGCTTAGCATAAC+AGG | - | tig0026376:11474-11493 | Msa1428550:CDS | 40.0% | |
| GACTGGAAAATTGGCTAAGT+CGG | + | tig0026376:11622-11641 | None:intergenic | 40.0% | |
| GCAATTTGTACAGATGAGAC+TGG | + | tig0026376:11639-11658 | None:intergenic | 40.0% | |
| ! | GTGTTTTACCGTTCTATTCC+AGG | - | tig0026376:11747-11766 | Msa1428550:CDS | 40.0% |
| TCTTCATCAGGAGCAAAATG+TGG | - | tig0026376:11841-11860 | Msa1428550:CDS | 40.0% | |
| CTTCATCAGGAGCAAAATGT+GGG | - | tig0026376:11842-11861 | Msa1428550:CDS | 40.0% | |
| GTATGCACAACTTTGACTCT+TGG | + | tig0026376:12045-12064 | None:intergenic | 40.0% | |
| ACCCAGATTGGAAATGCTTA+TGG | - | tig0026376:12159-12178 | Msa1428550:intron | 40.0% | |
| ! | GTAAGTTTTTCGCTTGCAGA+AGG | - | tig0026376:12181-12200 | Msa1428550:CDS | 40.0% |
| CTAACTTCGTCCCTAGATAT+AGG | - | tig0026376:12401-12420 | Msa1428550:CDS | 40.0% | |
| GTCAACGAGTCCTATATCTA+GGG | + | tig0026376:12414-12433 | None:intergenic | 40.0% | |
| GTTTCGCAAGTTTATCCTTG+AGG | - | tig0026376:12492-12511 | Msa1428550:intron | 40.0% | |
| TTAAAGGGGGCCTATAAAAC+GGG | - | tig0026376:12623-12642 | Msa1428550:intron | 40.0% | |
| ! | ATTTCCCAGTCCCGTTTTAT+AGG | + | tig0026376:12636-12655 | None:intergenic | 40.0% |
| ATAAAACGGGACTGGGAAAT+AGG | - | tig0026376:12636-12655 | Msa1428550:intron | 40.0% | |
| ! | GACAACACTGCTGATGATTT+TGG | - | tig0026376:12862-12881 | Msa1428550:CDS | 40.0% |
| ! | TATTAGTTTGGCACTGCCAT+TGG | - | tig0026376:12891-12910 | Msa1428550:CDS | 40.0% |
| ACACAACAACGAGAATCCAA+TGG | + | tig0026376:12910-12929 | None:intergenic | 40.0% | |
| ATTCTCGTTGTTGTGTTCAC+CGG | - | tig0026376:12914-12933 | Msa1428550:CDS | 40.0% | |
| CTCTTCAAAATCGATCAAGG+TGG | - | tig0026376:12977-12996 | Msa1428550:CDS | 40.0% | |
| AAATACTCCGGCAATTGCAA+GGG | + | tig0026376:13011-13030 | None:intergenic | 40.0% | |
| GTATGTTTGGCATTACGGAA+CGG | - | tig0026376:13042-13061 | Msa1428550:intron | 40.0% | |
| ATAGCAAAGTCTCAATGGCA+TGG | - | tig0026376:13089-13108 | Msa1428550:intron | 40.0% | |
| !! | TTACCACATTTTTCGGTGTG+TGG | - | tig0026376:13330-13349 | Msa1428550:intron | 40.0% |
| CATGAAATCTCTCGACTGTT+CGG | + | tig0026376:13497-13516 | None:intergenic | 40.0% | |
| !! | ACATTTGTTGGTGATCTAGC+AGG | + | tig0026376:13592-13611 | None:intergenic | 40.0% |
| TTAAACAGCTGTAGAGAAGC+TGG | - | tig0026376:13670-13689 | Msa1428550:intron | 40.0% | |
| TACTAGGAAACACAGTTGTG+AGG | - | tig0026376:13704-13723 | Msa1428550:intron | 40.0% | |
| ACTAGGAAACACAGTTGTGA+GGG | - | tig0026376:13705-13724 | Msa1428550:intron | 40.0% | |
| ACATTTAACAGACTCTCGTG+AGG | + | tig0026376:13829-13848 | None:intergenic | 40.0% | |
| CACGAGAGTCTGTTAAATGT+TGG | - | tig0026376:13829-13848 | Msa1428550:intron | 40.0% | |
| ATCTGCAACTCTGCACAAAA+TGG | + | tig0026376:13937-13956 | None:intergenic | 40.0% | |
| TAGTTCAAATTCCCTCGGAG+CGG | - | tig0026376:9477-9496 | Msa1428550:CDS | 45.0% | |
| ATCACTGCCAAGTCAAACCA+AGG | + | tig0026376:9709-9728 | None:intergenic | 45.0% | |
| CAAAGGCAGTATGTGGGATT+TGG | - | tig0026376:9872-9891 | Msa1428550:CDS | 45.0% | |
| ATTTCTGAGCCTTCCTGCTT+CGG | + | tig0026376:9925-9944 | None:intergenic | 45.0% | |
| CGACTGGCATATCAAAGTCT+TGG | - | tig0026376:10142-10161 | Msa1428550:CDS | 45.0% | |
| GATGATCCGGAGAAAGTGAT+TGG | - | tig0026376:10232-10251 | Msa1428550:CDS | 45.0% | |
| AGAGCTCCAATCACTTTCTC+CGG | + | tig0026376:10241-10260 | None:intergenic | 45.0% | |
| AGAGCAAACGACAATGGTCA+AGG | - | tig0026376:10322-10341 | Msa1428550:intron | 45.0% | |
| CTGCTCCATAGATGTAAGCT+TGG | + | tig0026376:10672-10691 | None:intergenic | 45.0% | |
| CAAGCTTACATCTATGGAGC+AGG | - | tig0026376:10670-10689 | Msa1428550:intron | 45.0% | |
| ! | TCATCAGTACGATGCTGGTT+GGG | + | tig0026376:10751-10770 | None:intergenic | 45.0% |
| TTCATCAGTACGATGCTGGT+TGG | + | tig0026376:10752-10771 | None:intergenic | 45.0% | |
| ACTTCTCATGGAAGGTAGTC+CGG | + | tig0026376:10792-10811 | None:intergenic | 45.0% | |
| ACCTGCATGGTAATTGGAGA+CGG | - | tig0026376:10892-10911 | Msa1428550:intron | 45.0% | |
| !!! | GTAGTTTTATCTGCTGCTGG+TGG | - | tig0026376:11052-11071 | Msa1428550:CDS | 45.0% |
| AGCATACCGCTATCAACTTC+GGG | + | tig0026376:11094-11113 | None:intergenic | 45.0% | |
| GAGCATACCGCTATCAACTT+CGG | + | tig0026376:11095-11114 | None:intergenic | 45.0% | |
| ! | GTAACACCATGGCGGAAAAA+AGG | + | tig0026376:11213-11232 | None:intergenic | 45.0% |
| !!! | TTTTTCCGCCATGGTGTTAC+AGG | - | tig0026376:11213-11232 | Msa1428550:intron | 45.0% |
| CAACTACTCCTGTAACACCA+TGG | + | tig0026376:11224-11243 | None:intergenic | 45.0% | |
| TGTTACAGGAGTAGTTGTGC+TGG | - | tig0026376:11227-11246 | Msa1428550:intron | 45.0% | |
| AGATACCGATACACGTAGAG+AGG | + | tig0026376:11417-11436 | None:intergenic | 45.0% | |
| TATCGGTATCTAAGAGACGG+AGG | - | tig0026376:11426-11445 | Msa1428550:CDS | 45.0% | |
| GCTAAGCAAGATTCCACCAA+GGG | + | tig0026376:11469-11488 | None:intergenic | 45.0% | |
| TGCTAAGCAAGATTCCACCA+AGG | + | tig0026376:11470-11489 | None:intergenic | 45.0% | |
| TGAAAAGGTTGCGGTGATTG+TGG | + | tig0026376:11989-12008 | None:intergenic | 45.0% | |
| ATTAAGCAAGCCCTTGCTCA+TGG | - | tig0026376:12012-12031 | Msa1428550:CDS | 45.0% | |
| TGGGAAACATCCATGAGCAA+GGG | + | tig0026376:12025-12044 | None:intergenic | 45.0% | |
| TTGGGAAACATCCATGAGCA+AGG | + | tig0026376:12026-12045 | None:intergenic | 45.0% | |
| CTGGAATATATATCTGGCCG+AGG | + | tig0026376:12080-12099 | None:intergenic | 45.0% | |
| ! | CTATGCATTGCTGTTACTGC+TGG | - | tig0026376:12123-12142 | Msa1428550:intron | 45.0% |
| GGTCAACGAGTCCTATATCT+AGG | + | tig0026376:12415-12434 | None:intergenic | 45.0% | |
| AGGACTCGTTGACCAAATCA+CGG | - | tig0026376:12421-12440 | Msa1428550:intron | 45.0% | |
| CTTTCTTAGCTCCCGTGATT+TGG | + | tig0026376:12436-12455 | None:intergenic | 45.0% | |
| TGCAGTTGTGTTAGTCATGC+TGG | - | tig0026376:12838-12857 | Msa1428550:CDS | 45.0% | |
| !! | CACCGGCTTATCATTGATTG+TGG | - | tig0026376:12931-12950 | Msa1428550:CDS | 45.0% |
| TCAAAATCGATCAAGGTGGC+TGG | - | tig0026376:12981-13000 | Msa1428550:intron | 45.0% | |
| CAAAATCGATCAAGGTGGCT+GGG | - | tig0026376:12982-13001 | Msa1428550:intron | 45.0% | |
| AATACTCCGGCAATTGCAAG+GGG | + | tig0026376:13010-13029 | None:intergenic | 45.0% | |
| GAAATACTCCGGCAATTGCA+AGG | + | tig0026376:13012-13031 | None:intergenic | 45.0% | |
| GTCTCAATGGCATGGATTCT+CGG | - | tig0026376:13097-13116 | Msa1428550:intron | 45.0% | |
| TCTCAATGGCATGGATTCTC+GGG | - | tig0026376:13098-13117 | Msa1428550:intron | 45.0% | |
| !! | ACACGGACTAGTCCTAAACT+GGG | + | tig0026376:13130-13149 | None:intergenic | 45.0% |
| TTGCAAGCTCTGTGTAGACT+AGG | + | tig0026376:13165-13184 | None:intergenic | 45.0% | |
| CGAGCCGAACAAACATGAAA+AGG | + | tig0026376:13420-13439 | None:intergenic | 45.0% | |
| !! | GCTGGTGTTGTTCACATACT+AGG | - | tig0026376:13688-13707 | Msa1428550:intron | 45.0% |
| !!! | TGTTTTAAAATTATTTAATA+AGG | - | tig0026376:11533-11552 | Msa1428550:intron | 5.0% |
| ACAGAAACTTGACCAGCCGA+TGG | - | tig0026376:9896-9915 | Msa1428550:CDS | 50.0% | |
| !! | TCCTCGTGGAGTTGATGATC+CGG | - | tig0026376:10219-10238 | Msa1428550:CDS | 50.0% |
| GCTTACATCTATGGAGCAGG+TGG | - | tig0026376:10673-10692 | Msa1428550:intron | 50.0% | |
| ATTTGCATGTCGGCAGAGCA+AGG | + | tig0026376:10716-10735 | None:intergenic | 50.0% | |
| GCTCTTCATCAGTACGATGC+TGG | + | tig0026376:10756-10775 | None:intergenic | 50.0% | |
| TTACCATGCAGGTGCCAACA+AGG | + | tig0026376:10885-10904 | None:intergenic | 50.0% | |
| GTTGGCACCTGCATGGTAAT+TGG | - | tig0026376:10886-10905 | Msa1428550:intron | 50.0% | |
| ACCGTCTCCAATTACCATGC+AGG | + | tig0026376:10896-10915 | None:intergenic | 50.0% | |
| CTACTCCTGTAACACCATGG+CGG | + | tig0026376:11221-11240 | None:intergenic | 50.0% | |
| GAGACGGAGGCAAAGATAGT+TGG | - | tig0026376:11439-11458 | Msa1428550:CDS | 50.0% | |
| !! | GATAGTTGGCTTTCCCTTGG+TGG | - | tig0026376:11453-11472 | Msa1428550:CDS | 50.0% |
| TTCTGGACAGGCTGCATATC+TGG | - | tig0026376:11698-11717 | Msa1428550:CDS | 50.0% | |
| GGACTCGTTGACCAAATCAC+GGG | - | tig0026376:12422-12441 | Msa1428550:intron | 50.0% | |
| CTGCAGTGCCTGTCATTACA+AGG | + | tig0026376:12823-12842 | None:intergenic | 50.0% | |
| !! | GACACGGACTAGTCCTAAAC+TGG | + | tig0026376:13131-13150 | None:intergenic | 50.0% |
| ! | TGTAGACTAGGCCGATTCCA+GGG | + | tig0026376:13153-13172 | None:intergenic | 50.0% |
| GTCTACACAGAGCTTGCAAG+TGG | - | tig0026376:13166-13185 | Msa1428550:CDS | 50.0% | |
| ACAACAACGGAATGGATCGC+TGG | + | tig0026376:13229-13248 | None:intergenic | 50.0% | |
| !! | TCTTCTGGGACTGTGTAGAC+AGG | + | tig0026376:13274-13293 | None:intergenic | 50.0% |
| ACACAGTCCCAGAAGAAGAG+CGG | - | tig0026376:13278-13297 | Msa1428550:exon | 50.0% | |
| CAAGGAACCGCTCTTCTTCT+GGG | + | tig0026376:13288-13307 | None:intergenic | 50.0% | |
| ACAAGGAACCGCTCTTCTTC+TGG | + | tig0026376:13289-13308 | None:intergenic | 50.0% | |
| CGGTTCCTTGTCAAGCGTAT+TGG | - | tig0026376:13298-13317 | Msa1428550:five_prime_UTR | 50.0% | |
| TCGGTCCAATACGCTTGACA+AGG | + | tig0026376:13306-13325 | None:intergenic | 50.0% | |
| GTGCCACACACCGAAAAATG+TGG | + | tig0026376:13336-13355 | None:intergenic | 50.0% | |
| ! | TTTCGGTGTGTGGCACGATA+TGG | - | tig0026376:13340-13359 | Msa1428550:intron | 50.0% |
| ! | GTCCATGATGGAAGGTTGCT+CGG | - | tig0026376:13441-13460 | Msa1428550:intron | 50.0% |
| ATCCGAGCAACCTTCCATCA+TGG | + | tig0026376:13446-13465 | None:intergenic | 50.0% | |
| ! | TCTCTCGACTGTTCGGTTTG+CGG | + | tig0026376:13490-13509 | None:intergenic | 50.0% |
| ! | ACACAGTTGTGAGGGCTAGT+AGG | - | tig0026376:13713-13732 | Msa1428550:intron | 50.0% |
| ! | CACAGTTGTGAGGGCTAGTA+GGG | - | tig0026376:13714-13733 | Msa1428550:intron | 50.0% |
| GCAACTCTGCACAAAATGGC+AGG | + | tig0026376:13933-13952 | None:intergenic | 50.0% | |
| CTTCCTGCTTCGGCATCCAT+CGG | + | tig0026376:9915-9934 | None:intergenic | 55.0% | |
| TCCGGATCATCAACTCCACG+AGG | + | tig0026376:10223-10242 | None:intergenic | 55.0% | |
| TGTCCTTGTTGGCACCTGCA+TGG | - | tig0026376:10879-10898 | Msa1428550:intron | 55.0% | |
| ATCTGCTGCTGGTGGCATCA+AGG | - | tig0026376:11060-11079 | Msa1428550:CDS | 55.0% | |
| AGGTTGCGGTGATTGTGGCT+TGG | + | tig0026376:11984-12003 | None:intergenic | 55.0% | |
| GGGGCCTATAAAACGGGACT+GGG | - | tig0026376:12629-12648 | Msa1428550:intron | 55.0% | |
| ATGGCATGGATTCTCGGGCT+CGG | - | tig0026376:13103-13122 | Msa1428550:intron | 55.0% | |
| !! | TTAGGACTAGTCCGTGTCCC+TGG | - | tig0026376:13133-13152 | Msa1428550:intron | 55.0% |
| CTAGTCCGTGTCCCTGGAAT+CGG | - | tig0026376:13139-13158 | Msa1428550:intron | 55.0% | |
| ! | GTGTAGACTAGGCCGATTCC+AGG | + | tig0026376:13154-13173 | None:intergenic | 55.0% |
| CAACGGAATGGATCGCTGGT+AGG | + | tig0026376:13225-13244 | None:intergenic | 55.0% | |
| ! | TGTTCGGCTCGAGTCCATGA+TGG | - | tig0026376:13429-13448 | Msa1428550:intron | 55.0% |
| CGATGGATGCCGAAGCAGGA+AGG | - | tig0026376:9913-9932 | Msa1428550:CDS | 60.0% | |
| TGCGCTGTTGCTGCTACGAC+TGG | - | tig0026376:10126-10145 | Msa1428550:CDS | 60.0% | |
| CTATGGAGCAGGTGGAACGC+TGG | - | tig0026376:10681-10700 | Msa1428550:intron | 60.0% | |
| GGGGGCCTATAAAACGGGAC+TGG | - | tig0026376:12628-12647 | Msa1428550:intron | 60.0% | |
| TGGGCTCCCCTTGCAATTGC+CGG | - | tig0026376:13001-13020 | Msa1428550:intron | 60.0% | |
| ! | CTAGGCCGATTCCAGGGACA+CGG | + | tig0026376:13147-13166 | None:intergenic | 60.0% |
| ! | CGGCTCGAGTCCATGATGGA+AGG | - | tig0026376:13433-13452 | Msa1428550:intron | 60.0% |
| CTGCTTCGGCATCCATCGGC+TGG | + | tig0026376:9911-9930 | None:intergenic | 65.0% | |
| CAGCCGATGGATGCCGAAGC+AGG | - | tig0026376:9909-9928 | Msa1428550:CDS | 65.0% | |
| ! | CTCGGGCTCGGTCCCAGTTT+AGG | - | tig0026376:13115-13134 | Msa1428550:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0026376 | gene | 9023 | 14091 | 9023 | ID=Msa1428550;Name=Msa1428550 |
| tig0026376 | mRNA | 9023 | 14091 | 9023 | ID=Msa1428550-mRNA-1;Parent=Msa1428550;Name=Msa1428550-mRNA-1;_AED=0.27;_eAED=0.27;_QI=224|1|1|1|0.87|0.77|9|221|789 |
| tig0026376 | exon | 9023 | 10280 | 9023 | ID=Msa1428550-mRNA-1:exon:6039;Parent=Msa1428550-mRNA-1 |
| tig0026376 | exon | 10934 | 11188 | 10934 | ID=Msa1428550-mRNA-1:exon:6038;Parent=Msa1428550-mRNA-1 |
| tig0026376 | exon | 11346 | 11513 | 11346 | ID=Msa1428550-mRNA-1:exon:6037;Parent=Msa1428550-mRNA-1 |
| tig0026376 | exon | 11619 | 11879 | 11619 | ID=Msa1428550-mRNA-1:exon:6036;Parent=Msa1428550-mRNA-1 |
| tig0026376 | exon | 12008 | 12058 | 12008 | ID=Msa1428550-mRNA-1:exon:6035;Parent=Msa1428550-mRNA-1 |
| tig0026376 | exon | 12177 | 12422 | 12177 | ID=Msa1428550-mRNA-1:exon:6034;Parent=Msa1428550-mRNA-1 |
| tig0026376 | exon | 12771 | 12996 | 12771 | ID=Msa1428550-mRNA-1:exon:6033;Parent=Msa1428550-mRNA-1 |
| tig0026376 | exon | 13155 | 13327 | 13155 | ID=Msa1428550-mRNA-1:exon:6032;Parent=Msa1428550-mRNA-1 |
| tig0026376 | exon | 13915 | 14091 | 13915 | ID=Msa1428550-mRNA-1:exon:6031;Parent=Msa1428550-mRNA-1 |
| tig0026376 | five_prime_UTR | 13915 | 14091 | 13915 | ID=Msa1428550-mRNA-1:five_prime_utr;Parent=Msa1428550-mRNA-1 |
| tig0026376 | five_prime_UTR | 13281 | 13327 | 13281 | ID=Msa1428550-mRNA-1:five_prime_utr;Parent=Msa1428550-mRNA-1 |
| tig0026376 | CDS | 13155 | 13280 | 13155 | ID=Msa1428550-mRNA-1:cds;Parent=Msa1428550-mRNA-1 |
| tig0026376 | CDS | 12771 | 12996 | 12771 | ID=Msa1428550-mRNA-1:cds;Parent=Msa1428550-mRNA-1 |
| tig0026376 | CDS | 12177 | 12422 | 12177 | ID=Msa1428550-mRNA-1:cds;Parent=Msa1428550-mRNA-1 |
| tig0026376 | CDS | 12008 | 12058 | 12008 | ID=Msa1428550-mRNA-1:cds;Parent=Msa1428550-mRNA-1 |
| tig0026376 | CDS | 11619 | 11879 | 11619 | ID=Msa1428550-mRNA-1:cds;Parent=Msa1428550-mRNA-1 |
| tig0026376 | CDS | 11346 | 11513 | 11346 | ID=Msa1428550-mRNA-1:cds;Parent=Msa1428550-mRNA-1 |
| tig0026376 | CDS | 10934 | 11188 | 10934 | ID=Msa1428550-mRNA-1:cds;Parent=Msa1428550-mRNA-1 |
| tig0026376 | CDS | 9244 | 10280 | 9244 | ID=Msa1428550-mRNA-1:cds;Parent=Msa1428550-mRNA-1 |
| tig0026376 | three_prime_UTR | 9023 | 9243 | 9023 | ID=Msa1428550-mRNA-1:three_prime_utr;Parent=Msa1428550-mRNA-1 |
| Gene Sequence |
| Protein sequence |
