Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1429980 | XP_003627957.1 | 84.104 | 346 | 44 | 2 | 2 | 336 | 5 | 350 | 0.0 | 588 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1429980 | sp|Q8L5A7|SOT15_ARATH | 50.000 | 310 | 144 | 6 | 19 | 322 | 47 | 351 | 6.33e-99 | 299 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1429980 | G7LHK8 | 84.104 | 346 | 44 | 2 | 2 | 336 | 5 | 350 | 0.0 | 588 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0768290 | Msa1429980 | 0.805809 | 1.115626e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1429980 | MtrunA17_Chr8g0353731 | 84.104 | 346 | 44 | 2 | 2 | 336 | 5 | 350 | 0.0 | 588 |
| Msa1429980 | MtrunA17_Chr8g0353591 | 60.063 | 318 | 123 | 3 | 8 | 322 | 5 | 321 | 3.73e-132 | 380 |
| Msa1429980 | MtrunA17_Chr7g0215691 | 58.841 | 328 | 120 | 5 | 4 | 322 | 7 | 328 | 1.20e-129 | 374 |
| Msa1429980 | MtrunA17_Chr7g0215701 | 60.308 | 325 | 117 | 6 | 8 | 322 | 5 | 327 | 5.12e-129 | 372 |
| Msa1429980 | MtrunA17_Chr8g0353721 | 56.716 | 335 | 130 | 5 | 2 | 322 | 5 | 338 | 1.34e-128 | 371 |
| Msa1429980 | MtrunA17_Chr8g0351331 | 58.333 | 312 | 123 | 4 | 17 | 322 | 14 | 324 | 5.11e-124 | 359 |
| Msa1429980 | MtrunA17_Chr3g0081701 | 58.104 | 327 | 126 | 7 | 1 | 322 | 12 | 332 | 1.18e-122 | 356 |
| Msa1429980 | MtrunA17_Chr8g0354381 | 62.891 | 256 | 91 | 3 | 70 | 322 | 1 | 255 | 2.95e-111 | 324 |
| Msa1429980 | MtrunA17_Chr8g0340661 | 61.278 | 266 | 64 | 6 | 4 | 257 | 7 | 245 | 6.93e-104 | 305 |
| Msa1429980 | MtrunA17_Chr8g0353861 | 83.708 | 178 | 24 | 2 | 1 | 173 | 1 | 178 | 4.46e-101 | 296 |
| Msa1429980 | MtrunA17_Chr8g0353871 | 89.308 | 159 | 16 | 1 | 70 | 227 | 2 | 160 | 2.16e-100 | 294 |
| Msa1429980 | MtrunA17_Chr8g0366191 | 48.896 | 317 | 152 | 6 | 10 | 321 | 16 | 327 | 3.47e-97 | 291 |
| Msa1429980 | MtrunA17_Chr8g0353921 | 62.385 | 218 | 79 | 2 | 107 | 322 | 24 | 240 | 4.13e-95 | 282 |
| Msa1429980 | MtrunA17_Chr3g0096081 | 47.634 | 317 | 157 | 5 | 10 | 321 | 18 | 330 | 6.53e-95 | 285 |
| Msa1429980 | MtrunA17_Chr3g0091901 | 46.057 | 317 | 160 | 6 | 10 | 320 | 16 | 327 | 1.70e-92 | 279 |
| Msa1429980 | MtrunA17_Chr8g0366181 | 44.304 | 316 | 147 | 5 | 10 | 321 | 16 | 306 | 2.67e-87 | 265 |
| Msa1429980 | MtrunA17_Chr8g0353691 | 58.411 | 214 | 86 | 2 | 111 | 322 | 28 | 240 | 1.16e-86 | 261 |
| Msa1429980 | MtrunA17_Chr8g0366241 | 55.191 | 183 | 80 | 1 | 138 | 320 | 22 | 202 | 2.67e-67 | 210 |
| Msa1429980 | MtrunA17_Chr3g0094771 | 50.505 | 198 | 96 | 1 | 123 | 320 | 18 | 213 | 9.07e-65 | 204 |
| Msa1429980 | MtrunA17_Chr8g0353841 | 87.255 | 102 | 13 | 0 | 216 | 317 | 1 | 102 | 3.16e-60 | 188 |
| Msa1429980 | MtrunA17_Chr8g0353631 | 61.157 | 121 | 46 | 1 | 202 | 322 | 4 | 123 | 2.02e-39 | 135 |
| Msa1429980 | MtrunA17_Chr8g0353671 | 42.697 | 89 | 33 | 1 | 211 | 299 | 44 | 114 | 9.06e-17 | 75.5 |
| Msa1429980 | MtrunA17_Chr8g0366161 | 49.180 | 61 | 31 | 0 | 219 | 279 | 2 | 62 | 2.06e-14 | 67.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1429980 | AT5G07010.1 | 50.000 | 310 | 144 | 6 | 19 | 322 | 47 | 351 | 6.43e-100 | 299 |
| Msa1429980 | AT5G07000.1 | 47.432 | 331 | 155 | 7 | 6 | 322 | 14 | 339 | 4.26e-98 | 294 |
| Msa1429980 | AT3G45070.3 | 45.110 | 317 | 158 | 8 | 12 | 320 | 13 | 321 | 3.08e-84 | 258 |
| Msa1429980 | AT3G45070.1 | 45.110 | 317 | 158 | 8 | 12 | 320 | 8 | 316 | 3.24e-84 | 258 |
| Msa1429980 | AT1G13420.1 | 46.377 | 276 | 144 | 1 | 47 | 322 | 55 | 326 | 5.11e-84 | 257 |
| Msa1429980 | AT3G45070.2 | 45.110 | 317 | 158 | 8 | 12 | 320 | 40 | 348 | 5.62e-84 | 258 |
| Msa1429980 | AT3G45080.1 | 46.302 | 311 | 156 | 7 | 16 | 320 | 17 | 322 | 1.54e-82 | 253 |
| Msa1429980 | AT1G18590.1 | 45.357 | 280 | 144 | 4 | 47 | 322 | 64 | 338 | 9.59e-82 | 252 |
| Msa1429980 | AT5G43690.1 | 43.728 | 279 | 151 | 2 | 48 | 322 | 50 | 326 | 5.86e-80 | 247 |
| Msa1429980 | AT2G03770.1 | 41.158 | 311 | 167 | 5 | 16 | 322 | 19 | 317 | 2.29e-76 | 238 |
| Msa1429980 | AT1G74100.1 | 42.561 | 289 | 149 | 6 | 47 | 326 | 56 | 336 | 1.48e-75 | 236 |
| Msa1429980 | AT2G14920.1 | 43.416 | 281 | 151 | 4 | 47 | 322 | 51 | 328 | 7.58e-74 | 231 |
| Msa1429980 | AT1G74090.1 | 44.286 | 280 | 147 | 4 | 47 | 322 | 68 | 342 | 1.10e-70 | 224 |
| Msa1429980 | AT4G26280.1 | 40.064 | 312 | 169 | 4 | 10 | 320 | 8 | 302 | 1.32e-69 | 220 |
| Msa1429980 | AT1G28170.1 | 44.404 | 277 | 149 | 4 | 48 | 322 | 48 | 321 | 1.73e-69 | 220 |
| Msa1429980 | AT2G03750.1 | 42.215 | 289 | 155 | 7 | 37 | 321 | 64 | 344 | 6.23e-69 | 219 |
| Msa1429980 | AT1G13430.1 | 41.722 | 302 | 158 | 4 | 38 | 322 | 46 | 346 | 4.51e-67 | 214 |
| Msa1429980 | AT2G03760.1 | 40.506 | 316 | 173 | 6 | 12 | 322 | 14 | 319 | 3.27e-65 | 209 |
| Msa1429980 | AT2G27570.1 | 36.223 | 323 | 143 | 6 | 2 | 320 | 3 | 266 | 2.18e-58 | 190 |
Find 45 sgRNAs with CRISPR-Local
Find 148 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AACATTGAAAATATACATTT+TGG | 0.099099 | tig0026602:+41452 | None:intergenic |
| GTCCTCTCACTTTCTAAATA+TGG | 0.198953 | tig0026602:-41487 | Msa1429980:CDS |
| TAAGTCCATTTGGTTCATTT+TGG | 0.203334 | tig0026602:-40958 | Msa1429980:CDS |
| AACCAAGTGGTGCCTGATTT+TGG | 0.207190 | tig0026602:+41340 | None:intergenic |
| GCTTCTTCTAAACTTAAAAT+TGG | 0.253600 | tig0026602:+41004 | None:intergenic |
| AACAACAATATCATTGTCTT+TGG | 0.287355 | tig0026602:+41372 | None:intergenic |
| ATTGTGGATGAAAAGTTAAA+TGG | 0.347744 | tig0026602:-40608 | Msa1429980:CDS |
| TCCTCTCACTTTCTAAATAT+GGG | 0.348326 | tig0026602:-41486 | Msa1429980:CDS |
| TGTAATGGGGTAAGTCCATT+TGG | 0.367896 | tig0026602:-40968 | Msa1429980:CDS |
| AGGCACTAGTTCATGTATAA+TGG | 0.381028 | tig0026602:+41249 | None:intergenic |
| AAATTACCTTTCCCCTTCAA+TGG | 0.405809 | tig0026602:-40648 | Msa1429980:CDS |
| TTCATAAATAGAACTTTGTC+TGG | 0.410159 | tig0026602:+40896 | None:intergenic |
| GAAATGCCAAAGTAGGAGAT+TGG | 0.414241 | tig0026602:-40673 | Msa1429980:CDS |
| TAAATAAATCTGGATCTATT+CGG | 0.414391 | tig0026602:-40724 | Msa1429980:CDS |
| GTTGCAAGCTTACCAAAATC+AGG | 0.416474 | tig0026602:-41352 | Msa1429980:CDS |
| TGTATAATGGATTTAAGTAA+TGG | 0.431998 | tig0026602:+41262 | None:intergenic |
| AAACTTAAAATTGGTAGAGA+TGG | 0.447502 | tig0026602:+41013 | None:intergenic |
| AGCATAAAGATTACGTTCAA+TGG | 0.448810 | tig0026602:+41225 | None:intergenic |
| GAATTGGAAGTAAATAAATC+TGG | 0.453055 | tig0026602:-40734 | Msa1429980:CDS |
| ATAGGTTGGATCAAAATTGA+TGG | 0.453755 | tig0026602:+41421 | None:intergenic |
| TATGACACAAAAGTATCAAA+TGG | 0.466948 | tig0026602:+41070 | None:intergenic |
| TTTGAAAAGTGATTATAGGT+TGG | 0.475678 | tig0026602:+41407 | None:intergenic |
| GATTCCTCTTCTTGAGTGAA+AGG | 0.479879 | tig0026602:+40809 | None:intergenic |
| TTCTTTCGAAATGCCAAAGT+AGG | 0.489194 | tig0026602:-40680 | Msa1429980:CDS |
| ATTGGACTCTTGAATTGACT+TGG | 0.502706 | tig0026602:+41120 | None:intergenic |
| TTTCTTCCATTGAAGGGGAA+AGG | 0.504152 | tig0026602:+40642 | None:intergenic |
| TGTTCCCAAAATGAACCAAA+TGG | 0.508753 | tig0026602:+40953 | None:intergenic |
| TGAATTGACTTGGCAAGTGA+AGG | 0.511048 | tig0026602:+41130 | None:intergenic |
| TCGCAATCAATACTCATTTG+AGG | 0.512047 | tig0026602:-41290 | Msa1429980:CDS |
| ATTGAAGAGCAATCAAAGGA+TGG | 0.512623 | tig0026602:-41532 | Msa1429980:CDS |
| TCTCACTTTCTAAATATGGG+TGG | 0.522926 | tig0026602:-41483 | Msa1429980:CDS |
| TACCAAAATCAGGCACCACT+TGG | 0.531615 | tig0026602:-41342 | Msa1429980:CDS |
| CTCACTTTCTAAATATGGGT+GGG | 0.548282 | tig0026602:-41482 | Msa1429980:CDS |
| AAGAATTTGTTCTCAATGTG+TGG | 0.554027 | tig0026602:+40701 | None:intergenic |
| TAAAGATTACGTTCAATGGA+AGG | 0.554426 | tig0026602:+41229 | None:intergenic |
| GACTTGGCAAGTGAAGGAAA+TGG | 0.557199 | tig0026602:+41136 | None:intergenic |
| TTTAATTGAAGAGCAATCAA+AGG | 0.562390 | tig0026602:-41536 | Msa1429980:CDS |
| TTGAAGAGCAATCAAAGGAT+GGG | 0.572360 | tig0026602:-41531 | Msa1429980:CDS |
| TGACTCTCTAAGTGGCTCAT+CGG | 0.592533 | tig0026602:+40584 | None:intergenic |
| CTATCCTTTCACTCAAGAAG+AGG | 0.595008 | tig0026602:-40813 | Msa1429980:CDS |
| TCAAAGGATGGGCAAGAAGA+CGG | 0.600067 | tig0026602:-41520 | Msa1429980:CDS |
| TAATAGTGTGACTCTCTAAG+TGG | 0.600235 | tig0026602:+40576 | None:intergenic |
| GCAAGAAGACGGTAAGCAGT+TGG | 0.623551 | tig0026602:-41509 | Msa1429980:CDS |
| ACCCATATTTAGAAAGTGAG+AGG | 0.646022 | tig0026602:+41485 | None:intergenic |
| TGTAAGTGCTCTCAACCAAG+TGG | 0.667240 | tig0026602:+41327 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATATAAACTATTTTACAAT+TGG | + | tig0026602:41013-41032 | None:intergenic | 10.0% |
| !!! | TATATAAACTATTTTACAAT+TGG | + | tig0026602:41013-41032 | None:intergenic | 10.0% |
| !!! | ACATTGAAAATATACATTTT+GGG | + | tig0026602:40662-40681 | None:intergenic | 15.0% |
| !!! | AACATTGAAAATATACATTT+TGG | + | tig0026602:40663-40682 | None:intergenic | 15.0% |
| !!! | TTATTTTTGATATAGGAATT+TGG | + | tig0026602:40927-40946 | None:intergenic | 15.0% |
| !!! | ACATTGAAAATATACATTTT+GGG | + | tig0026602:40662-40681 | None:intergenic | 15.0% |
| !!! | AACATTGAAAATATACATTT+TGG | + | tig0026602:40663-40682 | None:intergenic | 15.0% |
| !!! | TTATTTTTGATATAGGAATT+TGG | + | tig0026602:40927-40946 | None:intergenic | 15.0% |
| !!! | TTGTTTTGAAAAGTGATTAT+AGG | + | tig0026602:40712-40731 | None:intergenic | 20.0% |
| !!! | TGTATAATGGATTTAAGTAA+TGG | + | tig0026602:40853-40872 | None:intergenic | 20.0% |
| !!! | GGTTCAATTATTTTTGATAT+AGG | + | tig0026602:40934-40953 | None:intergenic | 20.0% |
| !! | TATCAAAAATAATTGAACCA+AGG | - | tig0026602:40935-40954 | Msa1429980:CDS | 20.0% |
| !!! | GGATTTTCGTTAATAAAATA+AGG | - | tig0026602:41067-41086 | Msa1429980:CDS | 20.0% |
| !!! | CTTTTGAAAGTTTTTGTAAT+GGG | - | tig0026602:41130-41149 | Msa1429980:CDS | 20.0% |
| !!! | TTTTGAAAGTTTTTGTAATG+GGG | - | tig0026602:41131-41150 | Msa1429980:CDS | 20.0% |
| !! | TAAATAAATCTGGATCTATT+CGG | - | tig0026602:41388-41407 | Msa1429980:CDS | 20.0% |
| !!! | TTGTTTTGAAAAGTGATTAT+AGG | + | tig0026602:40712-40731 | None:intergenic | 20.0% |
| !!! | TGTATAATGGATTTAAGTAA+TGG | + | tig0026602:40853-40872 | None:intergenic | 20.0% |
| !!! | GGTTCAATTATTTTTGATAT+AGG | + | tig0026602:40934-40953 | None:intergenic | 20.0% |
| !! | TATCAAAAATAATTGAACCA+AGG | - | tig0026602:40935-40954 | Msa1429980:CDS | 20.0% |
| !!! | GGATTTTCGTTAATAAAATA+AGG | - | tig0026602:41067-41086 | Msa1429980:CDS | 20.0% |
| !!! | CTTTTGAAAGTTTTTGTAAT+GGG | - | tig0026602:41130-41149 | Msa1429980:CDS | 20.0% |
| !!! | TTTTGAAAGTTTTTGTAATG+GGG | - | tig0026602:41131-41150 | Msa1429980:CDS | 20.0% |
| !! | TAAATAAATCTGGATCTATT+CGG | - | tig0026602:41388-41407 | Msa1429980:CDS | 20.0% |
| ! | TTTAATTGAAGAGCAATCAA+AGG | - | tig0026602:40576-40595 | Msa1429980:CDS | 25.0% |
| ! | TTTGAAAAGTGATTATAGGT+TGG | + | tig0026602:40708-40727 | None:intergenic | 25.0% |
| ! | AACAACAATATCATTGTCTT+TGG | + | tig0026602:40743-40762 | None:intergenic | 25.0% |
| !!! | TATGACACAAAAGTATCAAA+TGG | + | tig0026602:41045-41064 | None:intergenic | 25.0% |
| !! | TTGATACTTTTGTGTCATAT+TGG | - | tig0026602:41046-41065 | Msa1429980:CDS | 25.0% |
| ! | AAACTTAAAATTGGTAGAGA+TGG | + | tig0026602:41102-41121 | None:intergenic | 25.0% |
| ! | GCTTCTTCTAAACTTAAAAT+TGG | + | tig0026602:41111-41130 | None:intergenic | 25.0% |
| !!! | GCTTTTGAAAGTTTTTGTAA+TGG | - | tig0026602:41129-41148 | Msa1429980:CDS | 25.0% |
| !!! | TTCATTTTGGGAACATAATT+TGG | - | tig0026602:41167-41186 | Msa1429980:CDS | 25.0% |
| !!! | TCATTTTGGGAACATAATTT+GGG | - | tig0026602:41168-41187 | Msa1429980:CDS | 25.0% |
| ! | TTCATAAATAGAACTTTGTC+TGG | + | tig0026602:41219-41238 | None:intergenic | 25.0% |
| ! | AGTCTATTGACATGAAAAAT+AGG | + | tig0026602:41264-41283 | None:intergenic | 25.0% |
| !! | AATAGACTTGCAACATTTTT+GGG | - | tig0026602:41276-41295 | Msa1429980:CDS | 25.0% |
| ! | GAATTGGAAGTAAATAAATC+TGG | - | tig0026602:41378-41397 | Msa1429980:CDS | 25.0% |
| !! | ATAGTTTTTCTTCCATTGAA+GGG | + | tig0026602:41479-41498 | None:intergenic | 25.0% |
| ! | AGAAAAACTATCCAAAATTG+TGG | - | tig0026602:41488-41507 | Msa1429980:CDS | 25.0% |
| !! | TAACTTTTCATCCACAATTT+TGG | + | tig0026602:41502-41521 | None:intergenic | 25.0% |
| ! | ATTGTGGATGAAAAGTTAAA+TGG | - | tig0026602:41504-41523 | Msa1429980:CDS | 25.0% |
| ! | TTTAATTGAAGAGCAATCAA+AGG | - | tig0026602:40576-40595 | Msa1429980:CDS | 25.0% |
| ! | TTTGAAAAGTGATTATAGGT+TGG | + | tig0026602:40708-40727 | None:intergenic | 25.0% |
| ! | AACAACAATATCATTGTCTT+TGG | + | tig0026602:40743-40762 | None:intergenic | 25.0% |
| !!! | TATGACACAAAAGTATCAAA+TGG | + | tig0026602:41045-41064 | None:intergenic | 25.0% |
| !! | TTGATACTTTTGTGTCATAT+TGG | - | tig0026602:41046-41065 | Msa1429980:CDS | 25.0% |
| ! | AAACTTAAAATTGGTAGAGA+TGG | + | tig0026602:41102-41121 | None:intergenic | 25.0% |
| ! | GCTTCTTCTAAACTTAAAAT+TGG | + | tig0026602:41111-41130 | None:intergenic | 25.0% |
| !!! | GCTTTTGAAAGTTTTTGTAA+TGG | - | tig0026602:41129-41148 | Msa1429980:CDS | 25.0% |
| !!! | TTCATTTTGGGAACATAATT+TGG | - | tig0026602:41167-41186 | Msa1429980:CDS | 25.0% |
| !!! | TCATTTTGGGAACATAATTT+GGG | - | tig0026602:41168-41187 | Msa1429980:CDS | 25.0% |
| ! | TTCATAAATAGAACTTTGTC+TGG | + | tig0026602:41219-41238 | None:intergenic | 25.0% |
| ! | AGTCTATTGACATGAAAAAT+AGG | + | tig0026602:41264-41283 | None:intergenic | 25.0% |
| !! | AATAGACTTGCAACATTTTT+GGG | - | tig0026602:41276-41295 | Msa1429980:CDS | 25.0% |
| ! | GAATTGGAAGTAAATAAATC+TGG | - | tig0026602:41378-41397 | Msa1429980:CDS | 25.0% |
| !! | ATAGTTTTTCTTCCATTGAA+GGG | + | tig0026602:41479-41498 | None:intergenic | 25.0% |
| ! | AGAAAAACTATCCAAAATTG+TGG | - | tig0026602:41488-41507 | Msa1429980:CDS | 25.0% |
| !! | TAACTTTTCATCCACAATTT+TGG | + | tig0026602:41502-41521 | None:intergenic | 25.0% |
| ! | ATTGTGGATGAAAAGTTAAA+TGG | - | tig0026602:41504-41523 | Msa1429980:CDS | 25.0% |
| TCCTCTCACTTTCTAAATAT+GGG | - | tig0026602:40626-40645 | Msa1429980:CDS | 30.0% | |
| ! | ATAGGTTGGATCAAAATTGA+TGG | + | tig0026602:40694-40713 | None:intergenic | 30.0% |
| TAAAGATTACGTTCAATGGA+AGG | + | tig0026602:40886-40905 | None:intergenic | 30.0% | |
| AGCATAAAGATTACGTTCAA+TGG | + | tig0026602:40890-40909 | None:intergenic | 30.0% | |
| ! | ATAATTGAACCAAGGCTTTT+TGG | - | tig0026602:40943-40962 | Msa1429980:CDS | 30.0% |
| ! | TAATTGAACCAAGGCTTTTT+GGG | - | tig0026602:40944-40963 | Msa1429980:CDS | 30.0% |
| !! | TAAGTCCATTTGGTTCATTT+TGG | - | tig0026602:41154-41173 | Msa1429980:CDS | 30.0% |
| !! | AAGTCCATTTGGTTCATTTT+GGG | - | tig0026602:41155-41174 | Msa1429980:CDS | 30.0% |
| ! | CAATAGACTTGCAACATTTT+TGG | - | tig0026602:41275-41294 | Msa1429980:CDS | 30.0% |
| AGAAGAGGAATCTAAAAAAG+TGG | - | tig0026602:41314-41333 | Msa1429980:CDS | 30.0% | |
| !!! | ATGTTGTTTTGAAACGATGA+AGG | - | tig0026602:41356-41375 | Msa1429980:CDS | 30.0% |
| !!! | TTTTGAAACGATGAAGGAAT+TGG | - | tig0026602:41362-41381 | Msa1429980:CDS | 30.0% |
| ! | AAGAATTTGTTCTCAATGTG+TGG | + | tig0026602:41414-41433 | None:intergenic | 30.0% |
| ! | ATTTTTCCAATCTCCTACTT+TGG | + | tig0026602:41448-41467 | None:intergenic | 30.0% |
| ! | TAGTTTTTCTTCCATTGAAG+GGG | + | tig0026602:41478-41497 | None:intergenic | 30.0% |
| ! | GATAGTTTTTCTTCCATTGA+AGG | + | tig0026602:41480-41499 | None:intergenic | 30.0% |
| TCCTCTCACTTTCTAAATAT+GGG | - | tig0026602:40626-40645 | Msa1429980:CDS | 30.0% | |
| ! | ATAGGTTGGATCAAAATTGA+TGG | + | tig0026602:40694-40713 | None:intergenic | 30.0% |
| TAAAGATTACGTTCAATGGA+AGG | + | tig0026602:40886-40905 | None:intergenic | 30.0% | |
| AGCATAAAGATTACGTTCAA+TGG | + | tig0026602:40890-40909 | None:intergenic | 30.0% | |
| ! | ATAATTGAACCAAGGCTTTT+TGG | - | tig0026602:40943-40962 | Msa1429980:CDS | 30.0% |
| ! | TAATTGAACCAAGGCTTTTT+GGG | - | tig0026602:40944-40963 | Msa1429980:CDS | 30.0% |
| !! | TAAGTCCATTTGGTTCATTT+TGG | - | tig0026602:41154-41173 | Msa1429980:CDS | 30.0% |
| !! | AAGTCCATTTGGTTCATTTT+GGG | - | tig0026602:41155-41174 | Msa1429980:CDS | 30.0% |
| ! | CAATAGACTTGCAACATTTT+TGG | - | tig0026602:41275-41294 | Msa1429980:CDS | 30.0% |
| AGAAGAGGAATCTAAAAAAG+TGG | - | tig0026602:41314-41333 | Msa1429980:CDS | 30.0% | |
| !!! | ATGTTGTTTTGAAACGATGA+AGG | - | tig0026602:41356-41375 | Msa1429980:CDS | 30.0% |
| !!! | TTTTGAAACGATGAAGGAAT+TGG | - | tig0026602:41362-41381 | Msa1429980:CDS | 30.0% |
| ! | AAGAATTTGTTCTCAATGTG+TGG | + | tig0026602:41414-41433 | None:intergenic | 30.0% |
| ! | ATTTTTCCAATCTCCTACTT+TGG | + | tig0026602:41448-41467 | None:intergenic | 30.0% |
| ! | TAGTTTTTCTTCCATTGAAG+GGG | + | tig0026602:41478-41497 | None:intergenic | 30.0% |
| ! | GATAGTTTTTCTTCCATTGA+AGG | + | tig0026602:41480-41499 | None:intergenic | 30.0% |
| ATTGAAGAGCAATCAAAGGA+TGG | - | tig0026602:40580-40599 | Msa1429980:CDS | 35.0% | |
| TTGAAGAGCAATCAAAGGAT+GGG | - | tig0026602:40581-40600 | Msa1429980:CDS | 35.0% | |
| GTCCTCTCACTTTCTAAATA+TGG | - | tig0026602:40625-40644 | Msa1429980:CDS | 35.0% | |
| ACCCATATTTAGAAAGTGAG+AGG | + | tig0026602:40630-40649 | None:intergenic | 35.0% | |
| TCTCACTTTCTAAATATGGG+TGG | - | tig0026602:40629-40648 | Msa1429980:CDS | 35.0% | |
| CTCACTTTCTAAATATGGGT+GGG | - | tig0026602:40630-40649 | Msa1429980:CDS | 35.0% | |
| TCGCAATCAATACTCATTTG+AGG | - | tig0026602:40822-40841 | Msa1429980:CDS | 35.0% | |
| AGGCACTAGTTCATGTATAA+TGG | + | tig0026602:40866-40885 | None:intergenic | 35.0% | |
| ATTGGACTCTTGAATTGACT+TGG | + | tig0026602:40995-41014 | None:intergenic | 35.0% | |
| TGTTCCCAAAATGAACCAAA+TGG | + | tig0026602:41162-41181 | None:intergenic | 35.0% | |
| TTCTTTCGAAATGCCAAAGT+AGG | - | tig0026602:41432-41451 | Msa1429980:CDS | 35.0% | |
| AAATTACCTTTCCCCTTCAA+TGG | - | tig0026602:41464-41483 | Msa1429980:CDS | 35.0% | |
| TAATAGTGTGACTCTCTAAG+TGG | + | tig0026602:41539-41558 | None:intergenic | 35.0% | |
| ATTGAAGAGCAATCAAAGGA+TGG | - | tig0026602:40580-40599 | Msa1429980:CDS | 35.0% | |
| TTGAAGAGCAATCAAAGGAT+GGG | - | tig0026602:40581-40600 | Msa1429980:CDS | 35.0% | |
| GTCCTCTCACTTTCTAAATA+TGG | - | tig0026602:40625-40644 | Msa1429980:CDS | 35.0% | |
| ACCCATATTTAGAAAGTGAG+AGG | + | tig0026602:40630-40649 | None:intergenic | 35.0% | |
| TCTCACTTTCTAAATATGGG+TGG | - | tig0026602:40629-40648 | Msa1429980:CDS | 35.0% | |
| CTCACTTTCTAAATATGGGT+GGG | - | tig0026602:40630-40649 | Msa1429980:CDS | 35.0% | |
| TCGCAATCAATACTCATTTG+AGG | - | tig0026602:40822-40841 | Msa1429980:CDS | 35.0% | |
| AGGCACTAGTTCATGTATAA+TGG | + | tig0026602:40866-40885 | None:intergenic | 35.0% | |
| ATTGGACTCTTGAATTGACT+TGG | + | tig0026602:40995-41014 | None:intergenic | 35.0% | |
| TGTTCCCAAAATGAACCAAA+TGG | + | tig0026602:41162-41181 | None:intergenic | 35.0% | |
| TTCTTTCGAAATGCCAAAGT+AGG | - | tig0026602:41432-41451 | Msa1429980:CDS | 35.0% | |
| AAATTACCTTTCCCCTTCAA+TGG | - | tig0026602:41464-41483 | Msa1429980:CDS | 35.0% | |
| TAATAGTGTGACTCTCTAAG+TGG | + | tig0026602:41539-41558 | None:intergenic | 35.0% | |
| GTTGCAAGCTTACCAAAATC+AGG | - | tig0026602:40760-40779 | Msa1429980:CDS | 40.0% | |
| !! | TGAATTGACTTGGCAAGTGA+AGG | + | tig0026602:40985-41004 | None:intergenic | 40.0% |
| ! | TGTAATGGGGTAAGTCCATT+TGG | - | tig0026602:41144-41163 | Msa1429980:CDS | 40.0% |
| CTATCCTTTCACTCAAGAAG+AGG | - | tig0026602:41299-41318 | Msa1429980:CDS | 40.0% | |
| GATTCCTCTTCTTGAGTGAA+AGG | + | tig0026602:41306-41325 | None:intergenic | 40.0% | |
| GAAATGCCAAAGTAGGAGAT+TGG | - | tig0026602:41439-41458 | Msa1429980:CDS | 40.0% | |
| TTTCTTCCATTGAAGGGGAA+AGG | + | tig0026602:41473-41492 | None:intergenic | 40.0% | |
| GTTGCAAGCTTACCAAAATC+AGG | - | tig0026602:40760-40779 | Msa1429980:CDS | 40.0% | |
| !! | TGAATTGACTTGGCAAGTGA+AGG | + | tig0026602:40985-41004 | None:intergenic | 40.0% |
| ! | TGTAATGGGGTAAGTCCATT+TGG | - | tig0026602:41144-41163 | Msa1429980:CDS | 40.0% |
| CTATCCTTTCACTCAAGAAG+AGG | - | tig0026602:41299-41318 | Msa1429980:CDS | 40.0% | |
| GATTCCTCTTCTTGAGTGAA+AGG | + | tig0026602:41306-41325 | None:intergenic | 40.0% | |
| GAAATGCCAAAGTAGGAGAT+TGG | - | tig0026602:41439-41458 | Msa1429980:CDS | 40.0% | |
| TTTCTTCCATTGAAGGGGAA+AGG | + | tig0026602:41473-41492 | None:intergenic | 40.0% | |
| TCAAAGGATGGGCAAGAAGA+CGG | - | tig0026602:40592-40611 | Msa1429980:CDS | 45.0% | |
| TACCAAAATCAGGCACCACT+TGG | - | tig0026602:40770-40789 | Msa1429980:CDS | 45.0% | |
| ! | AACCAAGTGGTGCCTGATTT+TGG | + | tig0026602:40775-40794 | None:intergenic | 45.0% |
| TGTAAGTGCTCTCAACCAAG+TGG | + | tig0026602:40788-40807 | None:intergenic | 45.0% | |
| ATGTGAGTCCCAAAAAGCCT+TGG | + | tig0026602:40955-40974 | None:intergenic | 45.0% | |
| GACTTGGCAAGTGAAGGAAA+TGG | + | tig0026602:40979-40998 | None:intergenic | 45.0% | |
| TGACTCTCTAAGTGGCTCAT+CGG | + | tig0026602:41531-41550 | None:intergenic | 45.0% | |
| TCAAAGGATGGGCAAGAAGA+CGG | - | tig0026602:40592-40611 | Msa1429980:CDS | 45.0% | |
| TACCAAAATCAGGCACCACT+TGG | - | tig0026602:40770-40789 | Msa1429980:CDS | 45.0% | |
| ! | AACCAAGTGGTGCCTGATTT+TGG | + | tig0026602:40775-40794 | None:intergenic | 45.0% |
| TGTAAGTGCTCTCAACCAAG+TGG | + | tig0026602:40788-40807 | None:intergenic | 45.0% | |
| ATGTGAGTCCCAAAAAGCCT+TGG | + | tig0026602:40955-40974 | None:intergenic | 45.0% | |
| GACTTGGCAAGTGAAGGAAA+TGG | + | tig0026602:40979-40998 | None:intergenic | 45.0% | |
| TGACTCTCTAAGTGGCTCAT+CGG | + | tig0026602:41531-41550 | None:intergenic | 45.0% | |
| GCAAGAAGACGGTAAGCAGT+TGG | - | tig0026602:40603-40622 | Msa1429980:CDS | 50.0% | |
| GCAAGAAGACGGTAAGCAGT+TGG | - | tig0026602:40603-40622 | Msa1429980:CDS | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0026602 | gene | 40562 | 41572 | 40562 | ID=Msa1429980;Name=Msa1429980 |
| tig0026602 | mRNA | 40562 | 41572 | 40562 | ID=Msa1429980-mRNA-1;Parent=Msa1429980;Name=Msa1429980-mRNA-1;_AED=0.36;_eAED=0.36;_QI=0|-1|0|1|-1|1|1|0|336 |
| tig0026602 | exon | 40562 | 41572 | 40562 | ID=Msa1429980-mRNA-1:exon:6787;Parent=Msa1429980-mRNA-1 |
| tig0026602 | CDS | 40562 | 41572 | 40562 | ID=Msa1429980-mRNA-1:cds;Parent=Msa1429980-mRNA-1 |
| Gene Sequence |
| Protein sequence |
