AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1434310

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1434310 MtrunA17_Chr2g0296381 79.324 740 140 1 2 728 3 742 0.0 1241
Msa1434310 MtrunA17_Chr4g0067011 79.054 740 142 1 2 728 5 744 0.0 1237
Msa1434310 MtrunA17_Chr7g0268881 99.743 389 1 0 340 728 1 389 0.0 804
Msa1434310 MtrunA17_Chr7g0268891 98.466 326 5 0 1 326 1 326 0.0 672
Msa1434310 MtrunA17_Chr8g0361901 34.247 730 447 12 9 728 25 731 8.10e-136 417
Msa1434310 MtrunA17_Chr6g0453061 34.153 732 446 14 9 728 23 730 2.39e-131 405
Msa1434310 MtrunA17_Chr1g0166181 34.294 729 451 13 9 728 30 739 1.31e-126 394
Msa1434310 MtrunA17_Chr5g0416711 34.060 734 443 13 9 728 26 732 3.24e-126 392
Msa1434310 MtrunA17_Chr1g0166131 33.882 729 454 13 9 728 31 740 1.12e-122 384
Msa1434310 MtrunA17_Chr6g0453081 33.666 701 432 13 42 728 49 730 4.08e-122 382
Msa1434310 MtrunA17_Chr2g0285881 33.714 700 425 15 42 728 119 792 2.79e-121 381
Msa1434310 MtrunA17_Chr7g0231701 32.328 696 434 14 43 728 40 708 5.37e-111 352
Msa1434310 MtrunA17_Chr1g0166141 34.529 669 409 9 67 728 28 674 7.51e-110 348
Msa1434310 MtrunA17_Chr7g0231741 40.260 385 208 7 355 728 2 375 2.69e-78 255
Msa1434310 MtrunA17_Chr4g0067051 55.618 178 79 0 4 181 3 180 2.04e-65 215
Msa1434310 MtrunA17_Chr5g0416691 36.740 411 240 10 327 728 2 401 1.46e-64 220
Msa1434310 MtrunA17_Chr4g0067071 57.062 177 76 0 5 181 4 180 6.47e-64 211
Msa1434310 MtrunA17_Chr7g0231791 35.766 411 244 9 327 728 2 401 1.38e-62 214
Msa1434310 MtrunA17_Chr4g0067031 46.396 222 111 3 5 221 10 228 1.07e-54 192
Msa1434310 MtrunA17_Chr4g0067381 51.111 180 85 1 2 181 5 181 3.71e-54 185
Msa1434310 MtrunA17_Chr5g0416831 33.333 327 171 7 409 728 3 289 4.20e-46 166
Msa1434310 MtrunA17_Chr5g0416731 25.629 437 266 10 43 432 25 449 5.03e-39 150
Msa1434310 MtrunA17_Chr7g0231581 26.923 312 221 5 57 366 5 311 3.14e-36 139
Msa1434310 MtrunA17_Chr5g0416901 27.244 312 220 4 57 366 29 335 3.69e-36 139
Msa1434310 MtrunA17_Chr7g0231721 26.220 328 231 6 47 371 29 348 1.23e-35 138
Msa1434310 MtrunA17_Chr5g0416911 28.512 242 166 5 57 296 13 249 6.01e-30 119
Msa1434310 MtrunA17_Chr7g0231751 28.525 305 187 6 9 304 26 308 8.22e-30 120
Msa1434310 MtrunA17_Chr7g0231571 28.926 242 165 5 57 296 5 241 8.83e-30 118
Msa1434310 MtrunA17_Chr7g0231801 26.210 248 177 2 59 303 7 251 9.49e-23 98.2
Msa1434310 MtrunA17_Chr5g0416681 26.210 248 177 2 59 303 7 251 1.41e-22 97.8
Msa1434310 MtrunA17_Chr4g0074661 52.326 86 40 1 3 88 4 88 1.70e-21 89.7
Msa1434310 MtrunA17_Chr1g0166151 25.926 189 131 5 80 266 3 184 5.75e-16 76.6
Msa1434310 MtrunA17_Chr5g0416841 36.170 94 60 0 201 294 12 105 7.96e-14 68.2
Msa1434310 MtrunA17_Chr4g0068101 43.478 92 52 0 74 165 14 105 1.44e-12 64.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1434310 AT4G02570.4 81.030 738 130 1 1 728 1 738 0.0 1261
Msa1434310 AT4G02570.2 81.030 738 130 1 1 728 1 738 0.0 1261
Msa1434310 AT4G02570.1 81.030 738 130 1 1 728 1 738 0.0 1261
Msa1434310 AT4G02570.3 81.030 738 130 1 1 728 1 738 0.0 1261
Msa1434310 AT1G02980.1 66.442 742 235 3 1 728 1 742 0.0 1032
Msa1434310 AT1G02980.2 66.442 742 235 3 1 728 1 742 0.0 1032
Msa1434310 AT1G43140.1 65.986 735 220 3 1 728 10 721 0.0 1004
Msa1434310 AT1G59790.2 58.537 369 143 4 6 372 12 372 6.11e-147 434
Msa1434310 AT1G59790.1 58.924 353 137 3 6 356 12 358 5.38e-142 421
Msa1434310 AT1G26830.1 34.153 732 445 13 9 728 26 732 6.70e-135 416
Msa1434310 AT1G69670.1 33.973 730 449 13 9 728 26 732 1.14e-131 407
Msa1434310 AT1G69670.2 33.973 730 449 13 9 728 26 732 1.14e-131 407
Msa1434310 AT5G46210.1 32.920 726 452 14 14 728 91 792 8.89e-113 359
Msa1434310 AT1G59800.1 53.279 244 110 1 6 249 7 246 2.95e-83 265

Find 170 sgRNAs with CRISPR-Local

Find 470 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTGTGATAATATCCTTAAAA+AGG 0.174736 tig0027505:+10724 Msa1434310:CDS
TCAGAAGTGAACTGAGTTTC+TGG 0.191502 tig0027505:-6341 None:intergenic
GGACAATCAGCTGAAGTTTC+AGG 0.214963 tig0027505:+11265 Msa1434310:CDS
GGGGATATTGTTCTAGTATT+AGG 0.232391 tig0027505:-11861 None:intergenic
GATCAAAATCAATGACTTTC+CGG 0.238193 tig0027505:-6259 None:intergenic
ACTTGTTTAATCTTCCATTA+TGG 0.254172 tig0027505:-12703 None:intergenic
CATGAAGAGTAGGAAAGTTT+TGG 0.275166 tig0027505:+12133 Msa1434310:CDS
CTGTTCTTACCACTGGGTTT+TGG 0.279792 tig0027505:+11339 Msa1434310:CDS
TCCAAACACCTTCAGGTATC+TGG 0.291650 tig0027505:+12424 Msa1434310:CDS
GGGCCATCAACAATTGGTTT+TGG 0.319916 tig0027505:+12154 Msa1434310:CDS
TTCTTTATTGCTTTGATGTC+AGG 0.326381 tig0027505:-12350 None:intergenic
TGATAAAATGAGAAGGATAA+AGG 0.328384 tig0027505:+11917 Msa1434310:CDS
TGATCAAGGTTGGGCCTATA+TGG 0.328566 tig0027505:+6277 Msa1434310:CDS
CTTAATCCCATTCTCCATAT+AGG 0.330259 tig0027505:-6291 None:intergenic
CGAAGTAGCGATCGAGATAA+TGG 0.330855 tig0027505:-7084 None:intergenic
GCCAGATACCTGAAGGTGTT+TGG 0.344476 tig0027505:-12425 None:intergenic
TTGAACTCAAAGCTGTCATT+TGG 0.346797 tig0027505:-11882 None:intergenic
TGAACTCAAAGCTGTCATTT+GGG 0.348770 tig0027505:-11881 None:intergenic
AAGAAAATCCAAACACCTTC+AGG 0.353220 tig0027505:+12417 Msa1434310:CDS
ACCTTCTTCCTTTCATCAAC+AGG 0.355510 tig0027505:-12053 None:intergenic
CTTCTCAAGTGTTTCTTCAA+TGG 0.356057 tig0027505:-10774 None:intergenic
ACAGTTACTGTTCTTACCAC+TGG 0.358089 tig0027505:+11332 Msa1434310:CDS
ATCACCTTAAGCATGTAATC+TGG 0.360551 tig0027505:-7617 None:intergenic
GCTTTCTGCCTTCCGCGATT+TGG 0.370043 tig0027505:+7144 Msa1434310:CDS
TCCTGTCGAAAAGTAATCTT+CGG 0.371610 tig0027505:-11027 None:intergenic
GTTAATTGTCTCAACCTATC+AGG 0.377524 tig0027505:+11616 Msa1434310:CDS
TCTTTCTTCATCGCTCTGCC+AGG 0.378880 tig0027505:+5815 Msa1434310:five_prime_UTR
CTGAGTACACATATTATAGA+TGG 0.382151 tig0027505:-6758 None:intergenic
TGAGCTTCACGACAAGTATA+TGG 0.393145 tig0027505:+10162 Msa1434310:CDS
CTCTACCACTGAGCAGAAAC+TGG 0.394586 tig0027505:+8359 Msa1434310:CDS
GGCAACCGGATCCAGTCCTT+TGG 0.396443 tig0027505:-9196 None:intergenic
CTGGACATATTTGTTGAGAT+TGG 0.399300 tig0027505:+7485 Msa1434310:CDS
TGTCTGATTGCAGCATATTA+CGG 0.399834 tig0027505:+9312 Msa1434310:intron
GAAAGTGCAACATGAGTTGC+TGG 0.400856 tig0027505:+8668 Msa1434310:intron
CCTCCATCTTTGATGTGAAC+TGG 0.401829 tig0027505:-11108 None:intergenic
GTAACTGTCAGGTCAATTCC+TGG 0.408182 tig0027505:-11317 None:intergenic
TACGGACGAGGGTACAGCTT+TGG 0.418494 tig0027505:+9330 Msa1434310:CDS
CTCAACATACCTTGTGGAAA+AGG 0.419746 tig0027505:-10216 None:intergenic
TAACGACCGATTTGATTGTA+TGG 0.422453 tig0027505:-12664 None:intergenic
ACTTACCTGGATTTACTCAC+TGG 0.429900 tig0027505:+11550 Msa1434310:CDS
GGCATTAAAGGAAGCGTTTG+AGG 0.431218 tig0027505:+10646 Msa1434310:intron
CTGGGAACTTGCAACATCAT+TGG 0.433672 tig0027505:+11569 Msa1434310:CDS
TTGGAGTGTGTTGAGCAGTT+GGG 0.440473 tig0027505:+12173 Msa1434310:CDS
GGGTACAGCTTTGGTTCAAC+TGG 0.442853 tig0027505:+9339 Msa1434310:CDS
GCAACCGGATCCAGTCCTTT+GGG 0.443863 tig0027505:-9195 None:intergenic
CAGTTACTGTTCTTACCACT+GGG 0.445143 tig0027505:+11333 Msa1434310:CDS
ACTCCAAAACCAATTGTTGA+TGG 0.445389 tig0027505:-12157 None:intergenic
TGCTTGAATACATTGGCAAC+CGG 0.448292 tig0027505:-9210 None:intergenic
ATGGTTAAACCACAAGGTCT+TGG 0.449962 tig0027505:+7039 Msa1434310:CDS
TTGAAGACGTTGACAAAGAT+AGG 0.452542 tig0027505:+12078 Msa1434310:CDS
TTTGGAGTGTGTTGAGCAGT+TGG 0.453389 tig0027505:+12172 Msa1434310:CDS
AATGGCGGTGAAAGTTCGTT+TGG 0.453790 tig0027505:-5747 None:intergenic
ATGCCCAGATTACATGCTTA+AGG 0.457524 tig0027505:+7613 Msa1434310:CDS
TCATTAAATGCAGGTTTACA+TGG 0.459952 tig0027505:+7292 Msa1434310:intron
CATATTTGTTGAGATTGGTA+TGG 0.466211 tig0027505:+7490 Msa1434310:CDS
GCAGTTGGGGCGCATGTTCA+AGG 0.471653 tig0027505:+12187 Msa1434310:CDS
CTTTCATCAACAGGCGGTAG+AGG 0.472891 tig0027505:-12044 None:intergenic
CCTGTCGAAAAGTAATCTTC+GGG 0.475013 tig0027505:-11026 None:intergenic
TGCCTTGCTTAGAGATGATA+AGG 0.480177 tig0027505:+8737 Msa1434310:CDS
GGTTGGGCCTATATGGAGAA+TGG 0.485407 tig0027505:+6284 Msa1434310:CDS
ACAAAAGCAAGGCTACAATC+TGG 0.486549 tig0027505:+7576 Msa1434310:CDS
CTTTCTTCATCGCTCTGCCA+GGG 0.486583 tig0027505:+5816 Msa1434310:five_prime_UTR
CCGCAGTGTTGAATAGTAGC+AGG 0.487589 tig0027505:-11728 None:intergenic
TTGTGTCCATACAATCAAAT+CGG 0.493162 tig0027505:+12658 Msa1434310:three_prime_UTR
GGAAGAAAGTGCTAGCAATC+AGG 0.493933 tig0027505:+9363 Msa1434310:CDS
AAGGAAGGGAATTACCTGAT+AGG 0.495069 tig0027505:-11630 None:intergenic
TGAGATTGGTATGGGTGAAA+TGG 0.497096 tig0027505:+7499 Msa1434310:CDS
CAGGTATCTGGCATAGGTAA+AGG 0.501062 tig0027505:+12436 Msa1434310:exon
TAAACCACAAGGTCTTGGTT+AGG 0.505862 tig0027505:+7044 Msa1434310:CDS
CAAAACATAGAAAACTTACC+TGG 0.507850 tig0027505:+11537 Msa1434310:CDS
TGAAGATAATAGTTCTGCAC+TGG 0.514136 tig0027505:-10699 None:intergenic
GTTGGGCCTATATGGAGAAT+GGG 0.517547 tig0027505:+6285 Msa1434310:CDS
TCAACATACCTTGTGGAAAA+GGG 0.518090 tig0027505:-10215 None:intergenic
GAGAATGAAGCAATCTAACT+AGG 0.520531 tig0027505:-11803 None:intergenic
GGTACGAGGCAATGCTATGA+AGG 0.523364 tig0027505:+7316 Msa1434310:CDS
CACATCAAAGATGGAGGGAA+TGG 0.524300 tig0027505:+11114 Msa1434310:CDS
TGGTAAGAACAGTAACTGTC+AGG 0.524416 tig0027505:-11328 None:intergenic
CTTAGGTGGATGATCTGTCT+AGG 0.529658 tig0027505:+9148 Msa1434310:intron
TGATATTGATGCAGCAACAA+TGG 0.530306 tig0027505:+6235 Msa1434310:intron
GAAAACTCAGATGTACATCC+AGG 0.533396 tig0027505:+11299 Msa1434310:CDS
AATACCCAAAGGACTGGATC+CGG 0.533694 tig0027505:+9191 Msa1434310:CDS
CCATAAAATACCCAAAGGAC+TGG 0.534383 tig0027505:+9185 Msa1434310:CDS
CTCTACCGCCTGTTGATGAA+AGG 0.536863 tig0027505:+12045 Msa1434310:CDS
GCTTTATGAAACAGATTTCG+AGG 0.536923 tig0027505:+7523 Msa1434310:CDS
TCTTAACCTCCCTTCGGAGA+TGG 0.537237 tig0027505:+11382 Msa1434310:CDS
ACCACAAGGTCTTGGTTAGG+TGG 0.540831 tig0027505:+7047 Msa1434310:CDS
TCACCTTAAGCATGTAATCT+GGG 0.545206 tig0027505:-7616 None:intergenic
TGATGAATACATTAGATCTA+CGG 0.545719 tig0027505:+6834 Msa1434310:CDS
TCTCATCACTAGGGACTACC+TGG 0.550022 tig0027505:+12385 Msa1434310:CDS
TGGTTGACTTGACATTGGCT+AGG 0.551366 tig0027505:+11243 Msa1434310:CDS
AGAGACGATCGATGAAGCTA+TGG 0.551392 tig0027505:-5795 None:intergenic
TGGCCAGTTCACATCAAAGA+TGG 0.551720 tig0027505:+11105 Msa1434310:CDS
TCTGCTCAGTGGTAGAGTGC+AGG 0.551845 tig0027505:-8353 None:intergenic
ATATTTGTTGAGATTGGTAT+GGG 0.551918 tig0027505:+7491 Msa1434310:CDS
CTATGGACTCGAAAGCGAAA+GGG 0.559912 tig0027505:-5778 None:intergenic
TGGAGTGTGTTGAGCAGTTG+GGG 0.560172 tig0027505:+12174 Msa1434310:CDS
CTTACCTGGATTTACTCACT+GGG 0.560277 tig0027505:+11551 Msa1434310:CDS
AAGTACATTTGAGAATTCCC+TGG 0.564980 tig0027505:+12510 Msa1434310:three_prime_UTR
ATTTACAGCATTATGTAACC+AGG 0.565239 tig0027505:-12528 None:intergenic
CGCAGTGTTGAATAGTAGCA+GGG 0.566391 tig0027505:-11727 None:intergenic
TTTCATCAACAGGCGGTAGA+GGG 0.568478 tig0027505:-12043 None:intergenic
GGTTGAGACAATTAACTCGA+TGG 0.569225 tig0027505:-11609 None:intergenic
GCTATGGACTCGAAAGCGAA+AGG 0.571411 tig0027505:-5779 None:intergenic
CACTGAGCAGAAACTGGTTG+AGG 0.571837 tig0027505:+8365 Msa1434310:CDS
TGAGGGAGCTTGTTCAGAGA+TGG 0.572143 tig0027505:+7020 Msa1434310:CDS
TGCAAATCAGCTACTTGAGA+AGG 0.574681 tig0027505:+8698 Msa1434310:CDS
TCAGGTGGTTGACTTGACAT+TGG 0.574965 tig0027505:+11238 Msa1434310:intron
AGTTCCCAGTGAGTAAATCC+AGG 0.576323 tig0027505:-11555 None:intergenic
GTACAGTGTGGTAAGAGTTG+AGG 0.577703 tig0027505:+12466 Msa1434310:three_prime_UTR
GCCTGTTGATGAAAGGAAGA+AGG 0.578664 tig0027505:+12052 Msa1434310:CDS
TACCTTATCATCTCTAAGCA+AGG 0.579933 tig0027505:-8739 None:intergenic
AGATCAAAAGACTTGTAGCT+AGG 0.580560 tig0027505:-11362 None:intergenic
GAACTCAAAGCTGTCATTTG+GGG 0.582799 tig0027505:-11880 None:intergenic
TACAGCTTTGGTTCAACTGG+CGG 0.583884 tig0027505:+9342 Msa1434310:CDS
GGTTGCCAATGTATTCAAGC+AGG 0.589005 tig0027505:+9212 Msa1434310:CDS
ACATACCTGCTTGAATACAT+TGG 0.590125 tig0027505:-9217 None:intergenic
CACCTTCAGGTATCTGGCAT+AGG 0.590195 tig0027505:+12430 Msa1434310:CDS
AAAGTATAAGATACTTGCTA+AGG 0.590502 tig0027505:+11836 Msa1434310:CDS
TTGATGCAGCAACAATGGAC+CGG 0.590721 tig0027505:+6240 Msa1434310:intron
GGTTGACTTGACATTGGCTA+GGG 0.592201 tig0027505:+11244 Msa1434310:CDS
CATTGAAGAAACACTTGAGA+AGG 0.594124 tig0027505:+10775 Msa1434310:CDS
CTCAACCAGTTTCTGCTCAG+TGG 0.594459 tig0027505:-8364 None:intergenic
TCTCAAGTAGCTGATTTGCA+CGG 0.595742 tig0027505:-8695 None:intergenic
ATTGTTTCAGGTCAAGTGTG+TGG 0.595795 tig0027505:+11484 Msa1434310:intron
TATGCTCCTACCATCTCCGA+AGG 0.597271 tig0027505:-11392 None:intergenic
CCAGTTCACATCAAAGATGG+AGG 0.597446 tig0027505:+11108 Msa1434310:CDS
ACATCAAAGCAATAAAGAAG+CGG 0.601926 tig0027505:+12354 Msa1434310:CDS
GAAAGCCCAACTGCATTGAG+AGG 0.603740 tig0027505:-7127 None:intergenic
AAGTTAAAGCAGCAATGTGG+TGG 0.605153 tig0027505:+11085 Msa1434310:CDS
GGATTGAAGATCTCATCACT+AGG 0.605479 tig0027505:+12375 Msa1434310:CDS
TTGTGCGCATCATGAAGAGT+AGG 0.605496 tig0027505:+12123 Msa1434310:CDS
AGAAACTCAGTTCACTTCTG+AGG 0.607026 tig0027505:+6343 Msa1434310:CDS
AAAGCCCAACTGCATTGAGA+GGG 0.607250 tig0027505:-7126 None:intergenic
GCCACCTAACCAAGACCTTG+TGG 0.613076 tig0027505:-7048 None:intergenic
CACTAGGGACTACCTGGAGA+GGG 0.621336 tig0027505:+12391 Msa1434310:CDS
GCATGACGAGTTCATGCTGA+GGG 0.623264 tig0027505:+7003 Msa1434310:CDS
TGCAGATTACTACAAAAGCA+AGG 0.627832 tig0027505:+7565 Msa1434310:CDS
ATAACTAACCAAATCGCGGA+AGG 0.630058 tig0027505:-7152 None:intergenic
CAGTTCACATCAAAGATGGA+GGG 0.633412 tig0027505:+11109 Msa1434310:CDS
ATTGCAGCATATTACGGACG+AGG 0.633589 tig0027505:+9318 Msa1434310:intron
TACCTATGCCAGATACCTGA+AGG 0.634902 tig0027505:-12432 None:intergenic
AGCTGTTGCGAATAATCAAG+TGG 0.636005 tig0027505:-6787 None:intergenic
CTCCTACCATCTCCGAAGGG+AGG 0.637133 tig0027505:-11388 None:intergenic
GATTGAAGATCTCATCACTA+GGG 0.638896 tig0027505:+12376 Msa1434310:CDS
CTACTTGAGAAGGAGCACTC+AGG 0.641139 tig0027505:+8708 Msa1434310:CDS
TATCATCTCTAAGCAAGGCA+CGG 0.642857 tig0027505:-8734 None:intergenic
ACAGATTGACAAAGAACGCG+AGG 0.647462 tig0027505:+7427 Msa1434310:intron
AGCCCAACTGCATTGAGAGG+GGG 0.650144 tig0027505:-7124 None:intergenic
AAGCCCAACTGCATTGAGAG+GGG 0.653677 tig0027505:-7125 None:intergenic
CAGGTTTACATGGAGGTACG+AGG 0.656376 tig0027505:+7302 Msa1434310:intron
AATTTACTGATAAAATGAGA+AGG 0.656477 tig0027505:+11910 Msa1434310:CDS
TTCTTCCTTTCATCAACAGG+CGG 0.662126 tig0027505:-12050 None:intergenic
ATCCATAACTAACCAAATCG+CGG 0.663508 tig0027505:-7156 None:intergenic
TCAGAGATGGTTAAACCACA+AGG 0.664893 tig0027505:+7033 Msa1434310:CDS
TTTACAGCATTATGTAACCA+GGG 0.665621 tig0027505:-12527 None:intergenic
ACAGCTTTATGACAAGTACA+AGG 0.669893 tig0027505:+6804 Msa1434310:CDS
TTAAATGCAGGTTTACATGG+AGG 0.672472 tig0027505:+7295 Msa1434310:intron
AGCATGACGAGTTCATGCTG+AGG 0.681911 tig0027505:+7002 Msa1434310:CDS
ATGCTCCTACCATCTCCGAA+GGG 0.686433 tig0027505:-11391 None:intergenic
GCTTGCATATATCAGTGACA+AGG 0.689687 tig0027505:+10889 Msa1434310:CDS
ACAAAGTTAAAGCAGCAATG+TGG 0.691419 tig0027505:+11082 Msa1434310:CDS
CTGTACCATAAAATACCCAA+AGG 0.692454 tig0027505:+9180 Msa1434310:CDS
AAATTGAAGAGAATTCTCGA+AGG 0.694732 tig0027505:+6314 Msa1434310:CDS
CAGATTGACAAAGAACGCGA+GGG 0.699929 tig0027505:+7428 Msa1434310:intron
GCTTTATGACAAGTACAAGG+AGG 0.706820 tig0027505:+6807 Msa1434310:CDS
AAAGGTACTATTGTACAGTG+TGG 0.707922 tig0027505:+12454 Msa1434310:three_prime_UTR
TGTTGCGAATAATCAAGTGG+TGG 0.708188 tig0027505:-6784 None:intergenic
TTGCAGCATATTACGGACGA+GGG 0.747795 tig0027505:+9319 Msa1434310:intron
GTAGCTAGGCCAAAACCCAG+TGG 0.750006 tig0027505:-11348 None:intergenic
CCTGCTACTATTCAACACTG+CGG 0.796894 tig0027505:+11728 Msa1434310:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATATATATATATATATAT+AGG - tig0027505:7662-7681 None:intergenic 0.0%
!! ATATATATATATATATAGGT+TGG - tig0027505:7658-7677 None:intergenic 10.0%
!!! ATTTATATCAAATCAAATTT+TGG - tig0027505:7878-7897 None:intergenic 10.0%
!! AAAAAAAAAAAAAAACAAAG+GGG - tig0027505:8574-8593 None:intergenic 10.0%
!! CAAAAAAAAAAAAAAAACAA+AGG - tig0027505:8576-8595 None:intergenic 10.0%
!!! CTTTGTTTTTTTTTTTTTTT+TGG + tig0027505:8574-8593 Msa1434310:intron 10.0%
!! AAATTGTTAAAACAATTATT+TGG + tig0027505:9055-9074 Msa1434310:intron 10.0%
!! CAAAATAAAAAAATAAAATC+AGG - tig0027505:10068-10087 None:intergenic 10.0%
!!! TAATTTTTAATTATCTGTAT+TGG + tig0027505:12319-12338 Msa1434310:intron 10.0%
!!! TTCTAACTTATTTTGTTTTT+AGG + tig0027505:6958-6977 Msa1434310:intron 15.0%
!! TGAAAAATAACTTAATGATA+TGG + tig0027505:7845-7864 Msa1434310:intron 15.0%
!! ATTTGATATAAATGTAAAAG+TGG + tig0027505:7885-7904 Msa1434310:intron 15.0%
!!! CTCTTATTTTTTGATTTATA+TGG + tig0027505:8201-8220 Msa1434310:intron 15.0%
!!! TTTTCATTTACGAATTTTAT+TGG + tig0027505:8416-8435 Msa1434310:intron 15.0%
!!! AACTTTTTTAACATTACTAA+AGG - tig0027505:8472-8491 None:intergenic 15.0%
!! AATGTTAAAAAAGTTCTATA+AGG + tig0027505:8477-8496 Msa1434310:intron 15.0%
!!! TGTTTTTTTTTTTTTTTTGG+TGG + tig0027505:8577-8596 Msa1434310:intron 15.0%
!!! ATGTTATTATCTAATTTTTG+TGG + tig0027505:9896-9915 Msa1434310:intron 15.0%
!!! GTTTGTAGTATATATTTTTT+TGG + tig0027505:10295-10314 Msa1434310:intron 15.0%
!!! GTTTGTAGTATATATATTTT+TGG + tig0027505:10365-10384 Msa1434310:intron 15.0%
!! GAAATTTAAATAACTACAAT+CGG - tig0027505:11421-11440 None:intergenic 15.0%
!! AATCAATATCAAGAAACATT+AGG - tig0027505:6154-6173 None:intergenic 20.0%
!!! CTTGTATTAATGATTAGTTT+TGG + tig0027505:6426-6445 Msa1434310:intron 20.0%
!!! TTTTGATTTGTTGATTGTTT+TGG + tig0027505:6464-6483 Msa1434310:intron 20.0%
!!! TTTGGATTAATGATTACTTT+TGG + tig0027505:6521-6540 Msa1434310:intron 20.0%
!!! ATTGTTTTGGATTATTGATT+AGG + tig0027505:6630-6649 Msa1434310:intron 20.0%
!!! TTAGTTTTGTATTTTGTTGT+TGG + tig0027505:6708-6727 Msa1434310:intron 20.0%
!! TTATACTCAGTATAGAATAT+TGG - tig0027505:7188-7207 None:intergenic 20.0%
!!! ATTTGTTTGAAATTAAGATG+TGG - tig0027505:7820-7839 None:intergenic 20.0%
!! AAGAATATTATTTGTCTATG+CGG - tig0027505:7972-7991 None:intergenic 20.0%
!!! TAATATTCTTTGAGAATATG+TGG + tig0027505:7982-8001 Msa1434310:intron 20.0%
!!! ATATGTGGACATAATATTTT+TGG + tig0027505:7997-8016 Msa1434310:intron 20.0%
!!! GACATAATATTTTTGGAAAA+TGG + tig0027505:8004-8023 Msa1434310:intron 20.0%
!!! TTTTAACATTACTAAAGGAA+GGG - tig0027505:8467-8486 None:intergenic 20.0%
!!! TTTTTAACATTACTAAAGGA+AGG - tig0027505:8468-8487 None:intergenic 20.0%
!!! ATTTTTTTACTTTCATGGAA+TGG - tig0027505:8826-8845 None:intergenic 20.0%
!!! TATTTTGTAGGTTCATTTTA+GGG - tig0027505:8948-8967 None:intergenic 20.0%
!!! ATATTTTGTAGGTTCATTTT+AGG - tig0027505:8949-8968 None:intergenic 20.0%
!!! TAGATTTTTTAAAATATCCC+TGG + tig0027505:8991-9010 Msa1434310:intron 20.0%
!!! TAACAATTTTGATTTTGTGT+GGG - tig0027505:9044-9063 None:intergenic 20.0%
!!! TTAACAATTTTGATTTTGTG+TGG - tig0027505:9045-9064 None:intergenic 20.0%
!!! TCATTTTATCTATGCATATT+TGG + tig0027505:9102-9121 Msa1434310:intron 20.0%
!! AAATCTAAACAAATAGCATT+GGG - tig0027505:9248-9267 None:intergenic 20.0%
!! TAAATCTAAACAAATAGCAT+TGG - tig0027505:9249-9268 None:intergenic 20.0%
!! TTTATTACAATAGCTAGAAA+AGG + tig0027505:10091-10110 Msa1434310:intron 20.0%
!! CAACATACTAAATAATAGAA+CGG + tig0027505:10273-10292 Msa1434310:intron 20.0%
!! TGTGATAATATCCTTAAAAA+GGG + tig0027505:10725-10744 Msa1434310:CDS 20.0%
!! TACTTTAAATATGCAATTTC+AGG + tig0027505:11220-11239 Msa1434310:intron 20.0%
!! TTTAACACATTAATTGTTTC+AGG + tig0027505:11472-11491 Msa1434310:intron 20.0%
!!! AATTGTAAATTTTCTTCTAC+AGG + tig0027505:11698-11717 Msa1434310:intron 20.0%
!!! TCTCATTTTATCAGTAAATT+TGG - tig0027505:11910-11929 None:intergenic 20.0%
!! AATTTACTGATAAAATGAGA+AGG + tig0027505:11910-11929 Msa1434310:CDS 20.0%
!!! GATTCAGATTTTTATTAACA+GGG - tig0027505:12007-12026 None:intergenic 20.0%
!!! AGATTCAGATTTTTATTAAC+AGG - tig0027505:12008-12027 None:intergenic 20.0%
!!! TTGTTAATGTAAATGAGTTT+TGG + tig0027505:12234-12253 Msa1434310:intron 20.0%
!! CAAAATTTATACAGCAATTA+AGG - tig0027505:12271-12290 None:intergenic 20.0%
!!! CTTAATTGCTGTATAAATTT+TGG + tig0027505:12269-12288 Msa1434310:intron 20.0%
! CCTAACATCACAAAAATAAT+CGG - tig0027505:6008-6027 None:intergenic 25.0%
!!! CGATTATTTTTGTGATGTTA+GGG + tig0027505:6006-6025 Msa1434310:intron 25.0%
! TGATGTTAGGGTTTAATATT+TGG + tig0027505:6018-6037 Msa1434310:intron 25.0%
!! TAGGGTTTAATATTTGGTTT+AGG + tig0027505:6024-6043 Msa1434310:intron 25.0%
!! AGGGTTTAATATTTGGTTTA+GGG + tig0027505:6025-6044 Msa1434310:intron 25.0%
!! TAATATTTGGTTTAGGGTTT+AGG + tig0027505:6031-6050 Msa1434310:intron 25.0%
!!! TTTAGGTATTGAAATTCCTT+AGG + tig0027505:6048-6067 Msa1434310:intron 25.0%
! GCATCAATATCAAAAACATT+AGG - tig0027505:6227-6246 None:intergenic 25.0%
!!! AAAGTCATTGATTTTGATCA+AGG + tig0027505:6263-6282 Msa1434310:CDS 25.0%
! GACTGAAATTCAATGATAAA+AGG - tig0027505:6392-6411 None:intergenic 25.0%
!!! TGGATTTTGTTTATTAGCTT+TGG + tig0027505:6541-6560 Msa1434310:intron 25.0%
!!! TTATTAGCTTTGGATTTTGT+TGG + tig0027505:6551-6570 Msa1434310:intron 25.0%
! TGATGAATACATTAGATCTA+CGG + tig0027505:6834-6853 Msa1434310:CDS 25.0%
! CTTCATTTATAACATTTGTC+TGG + tig0027505:6889-6908 Msa1434310:intron 25.0%
! AGTAAGTCACATATAACAAA+AGG - tig0027505:6918-6937 None:intergenic 25.0%
! AACCTGCATTTAATGAAATT+GGG - tig0027505:7288-7307 None:intergenic 25.0%
! AAACCTGCATTTAATGAAAT+TGG - tig0027505:7289-7308 None:intergenic 25.0%
! TCATAGAGATCATCAAAATA+CGG - tig0027505:7388-7407 None:intergenic 25.0%
! ATCATTGTTGAAAAATGTTC+TGG + tig0027505:7466-7485 Msa1434310:CDS 25.0%
!! ATATTTGTTGAGATTGGTAT+GGG + tig0027505:7491-7510 Msa1434310:CDS 25.0%
!!! TAGTAACATTGATTTCAAAG+AGG + tig0027505:7789-7808 Msa1434310:intron 25.0%
! TATGAATATTGTGTAAAGCA+AGG + tig0027505:8238-8257 Msa1434310:intron 25.0%
! ATGAATATTGTGTAAAGCAA+GGG + tig0027505:8239-8258 Msa1434310:intron 25.0%
! GATAAAAATTGTTAACACAC+TGG - tig0027505:8274-8293 None:intergenic 25.0%
!! TTACGAATTTTATTGGATGA+AGG + tig0027505:8423-8442 Msa1434310:intron 25.0%
!!! AAGGCATTTTTTTACTTTCA+TGG - tig0027505:8831-8850 None:intergenic 25.0%
! ACATTATGGCATTGTATTTA+AGG - tig0027505:8870-8889 None:intergenic 25.0%
!! GTGTTAACTCTATATTTTGT+AGG - tig0027505:8960-8979 None:intergenic 25.0%
!!! AAAATGATTAAGTGCCATTT+GGG - tig0027505:9089-9108 None:intergenic 25.0%
!! TAAAATGATTAAGTGCCATT+TGG - tig0027505:9090-9109 None:intergenic 25.0%
! TCAAGAAGACAAAAAAACAA+AGG - tig0027505:9273-9292 None:intergenic 25.0%
! TAAAACAGTGAGAATATTCA+GGG - tig0027505:9399-9418 None:intergenic 25.0%
! CCTACAATCATTAAAATTTG+TGG - tig0027505:9738-9757 None:intergenic 25.0%
!!! CCACAAATTTTAATGATTGT+AGG + tig0027505:9735-9754 Msa1434310:intron 25.0%
! GAAATCTGTATCTTAAAAGT+TGG + tig0027505:9843-9862 Msa1434310:intron 25.0%
! AAAAAATAAAATCAGGTGCA+GGG - tig0027505:10061-10080 None:intergenic 25.0%
! AAAAAAATAAAATCAGGTGC+AGG - tig0027505:10062-10081 None:intergenic 25.0%
! TTATTTAGTATGTTGTCCAA+CGG - tig0027505:10268-10287 None:intergenic 25.0%
!! ATTATATTTGGGTTACCAAT+TGG - tig0027505:10339-10358 None:intergenic 25.0%
! GTAACCCAAATATAATAGAA+CGG + tig0027505:10343-10362 Msa1434310:intron 25.0%
! CAAACCGTTCTATTATATTT+GGG - tig0027505:10350-10369 None:intergenic 25.0%
! ACAAACCGTTCTATTATATT+TGG - tig0027505:10351-10370 None:intergenic 25.0%
!! AATTTGAGGCACATTAATTT+GGG - tig0027505:10420-10439 None:intergenic 25.0%
! TAAAAAGGAATCATTTACTG+AGG + tig0027505:10517-10536 Msa1434310:intron 25.0%
! AAAAAGGAATCATTTACTGA+GGG + tig0027505:10518-10537 Msa1434310:intron 25.0%
!!! AACATAACTAGGTTTTGATT+TGG + tig0027505:10565-10584 Msa1434310:intron 25.0%
! TTTACTGAAAACAATCAATG+TGG - tig0027505:10591-10610 None:intergenic 25.0%
!!! TGAATCTATCAATTTTTTCC+AGG + tig0027505:10625-10644 Msa1434310:intron 25.0%
! CTGTGATAATATCCTTAAAA+AGG + tig0027505:10724-10743 Msa1434310:CDS 25.0%
!! CTGATGAATTTTATATCTAC+AGG + tig0027505:10993-11012 Msa1434310:intron 25.0%
! TTTAAATATGCAATTTCAGG+TGG + tig0027505:11223-11242 Msa1434310:intron 25.0%
!! AAAGTATAAGATACTTGCTA+AGG + tig0027505:11836-11855 Msa1434310:CDS 25.0%
! TGATAAAATGAGAAGGATAA+AGG + tig0027505:11917-11936 Msa1434310:CDS 25.0%
!!! CTAAGTTCTAAATCTTATGA+GGG - tig0027505:11960-11979 None:intergenic 25.0%
!!! AAAATTGTTTTGCATACATG+AGG + tig0027505:12582-12601 Msa1434310:three_prime_UTR 25.0%
!! TAGTTTTTATGTGTCCATAA+TGG + tig0027505:12689-12708 Msa1434310:three_prime_UTR 25.0%
! ACTTGTTTAATCTTCCATTA+TGG - tig0027505:12706-12725 None:intergenic 25.0%
ATGAAAGGTTAGATGAGAAA+GGG - tig0027505:5851-5870 None:intergenic 30.0%
AATGAAAGGTTAGATGAGAA+AGG - tig0027505:5852-5871 None:intergenic 30.0%
AAGAAATGATCGAGAATGAA+AGG - tig0027505:5866-5885 None:intergenic 30.0%
!!! GTCAATCTTTTTAGGGTTTA+GGG + tig0027505:5911-5930 Msa1434310:intron 30.0%
!!! CCGATTATTTTTGTGATGTT+AGG + tig0027505:6005-6024 Msa1434310:intron 30.0%
GATTACATACATATGAACGT+AGG - tig0027505:6124-6143 None:intergenic 30.0%
GATCAAAATCAATGACTTTC+CGG - tig0027505:6262-6281 None:intergenic 30.0%
!!! TCATTGATTTTGATCAAGGT+TGG + tig0027505:6267-6286 Msa1434310:CDS 30.0%
!!! CATTGATTTTGATCAAGGTT+GGG + tig0027505:6268-6287 Msa1434310:CDS 30.0%
AAATTGAAGAGAATTCTCGA+AGG + tig0027505:6314-6333 Msa1434310:CDS 30.0%
!! TTGGATTTGTTGATTAGCTT+TGG + tig0027505:6483-6502 Msa1434310:intron 30.0%
TGGATTATGTTTGATTGCTT+TGG + tig0027505:6503-6522 Msa1434310:intron 30.0%
!! TTGGATTTTGTTGGTTGTTT+TGG + tig0027505:6560-6579 Msa1434310:intron 30.0%
!!! TGCATTTTGTTGATTAGCTT+TGG + tig0027505:6658-6677 Msa1434310:intron 30.0%
! TATTATAGATGGTTCTGTGA+TGG - tig0027505:6750-6769 None:intergenic 30.0%
CTGAGTACACATATTATAGA+TGG - tig0027505:6761-6780 None:intergenic 30.0%
AATACATTAGATCTACGGTA+GGG + tig0027505:6839-6858 Msa1434310:intron 30.0%
AAGAAAAACATAAACAGTGG+AGG - tig0027505:6868-6887 None:intergenic 30.0%
AGCAAGAAAAACATAAACAG+TGG - tig0027505:6871-6890 None:intergenic 30.0%
TCATTAAATGCAGGTTTACA+TGG + tig0027505:7292-7311 Msa1434310:intron 30.0%
! CATATTTGTTGAGATTGGTA+TGG + tig0027505:7490-7509 Msa1434310:CDS 30.0%
!! TCAAATCAAATTTTGGCGTT+TGG - tig0027505:7871-7890 None:intergenic 30.0%
TGTAAAAGTGGTATACATTG+TGG + tig0027505:7897-7916 Msa1434310:intron 30.0%
GTAAAAGTGGTATACATTGT+GGG + tig0027505:7898-7917 Msa1434310:intron 30.0%
! CTTCAAATTGAAAGCATGTT+TGG - tig0027505:8064-8083 None:intergenic 30.0%
! ATGCTTTCAATTTGAAGTGT+TGG + tig0027505:8067-8086 Msa1434310:intron 30.0%
TCCTTTGAACTCAATTTCAA+AGG + tig0027505:8101-8120 Msa1434310:intron 30.0%
TGAATATTGTGTAAAGCAAG+GGG + tig0027505:8240-8259 Msa1434310:intron 30.0%
! TTTTATCCATGTAATTGCAC+AGG + tig0027505:8287-8306 Msa1434310:intron 30.0%
TTTCCAAGAATGGTATTCTT+GGG - tig0027505:8525-8544 None:intergenic 30.0%
ATTTCCAAGAATGGTATTCT+TGG - tig0027505:8526-8545 None:intergenic 30.0%
GAATACCATTCTTGGAAATA+TGG + tig0027505:8527-8546 Msa1434310:intron 30.0%
TAGAACCATATTTCCAAGAA+TGG - tig0027505:8535-8554 None:intergenic 30.0%
!! TGACTTACTTTTCTGTTTGA+CGG + tig0027505:8773-8792 Msa1434310:intron 30.0%
!! CTTTGGAACTCAAAACATTA+TGG - tig0027505:8884-8903 None:intergenic 30.0%
CAAAATATAGAGTTAACACG+TGG + tig0027505:8961-8980 Msa1434310:intron 30.0%
CTAAAACAGTGAGAATATTC+AGG - tig0027505:9400-9419 None:intergenic 30.0%
AAATTTAAATGCACCAGTGT+CGG - tig0027505:9934-9953 None:intergenic 30.0%
TGATAGTTTCTAATTGCTGA+TGG + tig0027505:9966-9985 Msa1434310:intron 30.0%
! GCTCAATGAATTTTCTGATA+AGG - tig0027505:10147-10166 None:intergenic 30.0%
TATTTAGTATGTTGTCCAAC+GGG - tig0027505:10267-10286 None:intergenic 30.0%
! CATTAATTTGGGTTACCAAT+TGG - tig0027505:10409-10428 None:intergenic 30.0%
! CAATTTGAGGCACATTAATT+TGG - tig0027505:10421-10440 None:intergenic 30.0%
ATTAATGTGCCTCAAATTGA+TGG + tig0027505:10422-10441 Msa1434310:intron 30.0%
TTAATGTGCCTCAAATTGAT+GGG + tig0027505:10423-10442 Msa1434310:intron 30.0%
TGGCTACAAAAACTGTAAAA+AGG + tig0027505:10502-10521 Msa1434310:intron 30.0%
!!! CAATTTTTTCCAGGCATTAA+AGG + tig0027505:10634-10653 Msa1434310:intron 30.0%
! TTTTGCAATAAAACTGTTGC+TGG + tig0027505:10671-10690 Msa1434310:CDS 30.0%
GATAATATCCTTAAAAAGGG+TGG + tig0027505:10728-10747 Msa1434310:CDS 30.0%
! ATCTCTTTGCAGAATTTTAC+AGG + tig0027505:10912-10931 Msa1434310:CDS 30.0%
! ATTTTCAAACTCTTCTTGCA+TGG + tig0027505:10939-10958 Msa1434310:intron 30.0%
CTAACTAACTAACTAACTCT+TGG + tig0027505:11158-11177 Msa1434310:intron 30.0%
! AAGTGTGTGGAAGTTTTTAA+GGG + tig0027505:11497-11516 Msa1434310:CDS 30.0%
CAAAACATAGAAAACTTACC+TGG + tig0027505:11537-11556 Msa1434310:CDS 30.0%
! ACAATTAACTCGATGGTTTT+TGG - tig0027505:11605-11624 None:intergenic 30.0%
!! GCTAAGTTCTAAATCTTATG+AGG - tig0027505:11961-11980 None:intergenic 30.0%
! ATGAAGAGTAGGAAAGTTTT+GGG + tig0027505:12134-12153 Msa1434310:CDS 30.0%
!! AATGTAAATGAGTTTTGGTG+TGG + tig0027505:12239-12258 Msa1434310:intron 30.0%
TTCTTTATTGCTTTGATGTC+AGG - tig0027505:12353-12372 None:intergenic 30.0%
ACATCAAAGCAATAAAGAAG+CGG + tig0027505:12354-12373 Msa1434310:CDS 30.0%
! GGAAGTACATTTGATTCTTA+TGG + tig0027505:12487-12506 Msa1434310:intron 30.0%
TTTACAGCATTATGTAACCA+GGG - tig0027505:12530-12549 None:intergenic 30.0%
ATTTACAGCATTATGTAACC+AGG - tig0027505:12531-12550 None:intergenic 30.0%
!!! CATACATGAGGAGTTTTTTT+TGG + tig0027505:12594-12613 Msa1434310:three_prime_UTR 30.0%
TTGTGTCCATACAATCAAAT+CGG + tig0027505:12658-12677 Msa1434310:three_prime_UTR 30.0%
TGAAAGGTTAGATGAGAAAG+GGG - tig0027505:5850-5869 None:intergenic 35.0%
! TCCTGTCGTCAATCTTTTTA+GGG + tig0027505:5904-5923 Msa1434310:intron 35.0%
!!! CGTCAATCTTTTTAGGGTTT+AGG + tig0027505:5910-5929 Msa1434310:intron 35.0%
! TAATCGTAACGAGCATTGTT+CGG + tig0027505:5975-5994 Msa1434310:intron 35.0%
AAGTAAACAGCGAATACCTA+AGG - tig0027505:6067-6086 None:intergenic 35.0%
TGATATTGATGCAGCAACAA+TGG + tig0027505:6235-6254 Msa1434310:intron 35.0%
CTTAATCCCATTCTCCATAT+AGG - tig0027505:6294-6313 None:intergenic 35.0%
!! TGCATTTTGTTGATTAGCTC+TGG + tig0027505:6598-6617 Msa1434310:intron 35.0%
!! GCATTTTGTTGATTAGCTCT+GGG + tig0027505:6599-6618 Msa1434310:intron 35.0%
!! CTGGGTTATGTTGATTGTTT+TGG + tig0027505:6617-6636 Msa1434310:intron 35.0%
! TTGGATTATGCTGATTGTTC+TGG + tig0027505:6677-6696 Msa1434310:intron 35.0%
! ACAGCTTTATGACAAGTACA+AGG + tig0027505:6804-6823 Msa1434310:CDS 35.0%
GAATACATTAGATCTACGGT+AGG + tig0027505:6838-6857 Msa1434310:intron 35.0%
ATCCATAACTAACCAAATCG+CGG - tig0027505:7159-7178 None:intergenic 35.0%
!! AGTGCATTGAGTATTGATTG+AGG - tig0027505:7245-7264 None:intergenic 35.0%
CACCCAATTTCATTAAATGC+AGG + tig0027505:7283-7302 Msa1434310:intron 35.0%
TTAAATGCAGGTTTACATGG+AGG + tig0027505:7295-7314 Msa1434310:intron 35.0%
TGATTGTTCTTGTAAGTCCA+TGG + tig0027505:7342-7361 Msa1434310:intron 35.0%
! CTGGACATATTTGTTGAGAT+TGG + tig0027505:7485-7504 Msa1434310:CDS 35.0%
GCTTTATGAAACAGATTTCG+AGG + tig0027505:7523-7542 Msa1434310:CDS 35.0%
TGCAGATTACTACAAAAGCA+AGG + tig0027505:7565-7584 Msa1434310:CDS 35.0%
TCACCTTAAGCATGTAATCT+GGG - tig0027505:7619-7638 None:intergenic 35.0%
ATCACCTTAAGCATGTAATC+TGG - tig0027505:7620-7639 None:intergenic 35.0%
CATGCTTAAGGTGATGTATT+TGG + tig0027505:7625-7644 Msa1434310:intron 35.0%
CTTAAGGTGATGTATTTGGA+TGG + tig0027505:7629-7648 Msa1434310:intron 35.0%
GTAGATTAGAAGTCAAAGTG+AGG - tig0027505:7703-7722 None:intergenic 35.0%
ATGTCCATTTCTGTGAATCA+TGG - tig0027505:7935-7954 None:intergenic 35.0%
!! GCCTTTGAAATTGAGTTCAA+AGG - tig0027505:8105-8124 None:intergenic 35.0%
TACCTTATCATCTCTAAGCA+AGG - tig0027505:8742-8761 None:intergenic 35.0%
AGGCAAGATGACAAAAACAA+AGG - tig0027505:8850-8869 None:intergenic 35.0%
TTGAGTTCCAAAGCAAACAT+TGG + tig0027505:8891-8910 Msa1434310:intron 35.0%
TAGAATGGCATTTCAAACCA+GGG - tig0027505:9011-9030 None:intergenic 35.0%
GTGGGAATCAAAATGTAGAA+TGG - tig0027505:9026-9045 None:intergenic 35.0%
ATCTCGAATTGCTTTGTCTT+AGG + tig0027505:9131-9150 Msa1434310:intron 35.0%
CTGTACCATAAAATACCCAA+AGG + tig0027505:9180-9199 Msa1434310:CDS 35.0%
ACATACCTGCTTGAATACAT+TGG - tig0027505:9220-9239 None:intergenic 35.0%
TGTCTGATTGCAGCATATTA+CGG + tig0027505:9312-9331 Msa1434310:intron 35.0%
TGATCTATCAGATAACACCA+TGG - tig0027505:9477-9496 None:intergenic 35.0%
! GGTGTTATCTGATAGATCAT+TGG + tig0027505:9478-9497 Msa1434310:intron 35.0%
! TCTGATCAAGTGTTGTCAAA+TGG + tig0027505:9558-9577 Msa1434310:intron 35.0%
TAACTAAACTGAAGCGCATT+TGG - tig0027505:9637-9656 None:intergenic 35.0%
GTACAAATATGAGTTTGCCA+TGG + tig0027505:9685-9704 Msa1434310:intron 35.0%
TCTTTGCAGAAAACTACAAG+CGG + tig0027505:10010-10029 Msa1434310:intron 35.0%
AATAGCTAGAAAAGGTCTGA+AGG + tig0027505:10099-10118 Msa1434310:intron 35.0%
GGTTAATCATGTGAAATTGC+AGG + tig0027505:10120-10139 Msa1434310:intron 35.0%
TCAACATACCTTGTGGAAAA+GGG - tig0027505:10218-10237 None:intergenic 35.0%
! TGAAGATAATAGTTCTGCAC+TGG - tig0027505:10702-10721 None:intergenic 35.0%
CTTCTCAAGTGTTTCTTCAA+TGG - tig0027505:10777-10796 None:intergenic 35.0%
CATTGAAGAAACACTTGAGA+AGG + tig0027505:10775-10794 Msa1434310:CDS 35.0%
! AAGGTAACTTTTGACCGTTT+AGG + tig0027505:10794-10813 Msa1434310:intron 35.0%
CTGTCGAATTTGAACAACTT+AGG - tig0027505:10858-10877 None:intergenic 35.0%
CTAAGTTGTTCAAATTCGAC+AGG + tig0027505:10856-10875 Msa1434310:intron 35.0%
AAACTCTTCTTGCATGGTTT+GGG + tig0027505:10945-10964 Msa1434310:intron 35.0%
TCCTGTCGAAAAGTAATCTT+CGG - tig0027505:11030-11049 None:intergenic 35.0%
ACAAAGTTAAAGCAGCAATG+TGG + tig0027505:11082-11101 Msa1434310:CDS 35.0%
AGTTAGTTAGTTAGTTAGCC+TGG - tig0027505:11156-11175 None:intergenic 35.0%
AGATCAAAAGACTTGTAGCT+AGG - tig0027505:11365-11384 None:intergenic 35.0%
! TTTTGATCTTAACCTCCCTT+CGG + tig0027505:11376-11395 Msa1434310:CDS 35.0%
! CAAGTGTGTGGAAGTTTTTA+AGG + tig0027505:11496-11515 Msa1434310:CDS 35.0%
GTTAATTGTCTCAACCTATC+AGG + tig0027505:11616-11635 Msa1434310:CDS 35.0%
AATAGTCAGCATAACAGAAG+AGG - tig0027505:11665-11684 None:intergenic 35.0%
GAGAATGAAGCAATCTAACT+AGG - tig0027505:11806-11825 None:intergenic 35.0%
GGGGATATTGTTCTAGTATT+AGG - tig0027505:11864-11883 None:intergenic 35.0%
! TGAACTCAAAGCTGTCATTT+GGG - tig0027505:11884-11903 None:intergenic 35.0%
TTGAACTCAAAGCTGTCATT+TGG - tig0027505:11885-11904 None:intergenic 35.0%
TTGAAGACGTTGACAAAGAT+AGG + tig0027505:12078-12097 Msa1434310:CDS 35.0%
! CATGAAGAGTAGGAAAGTTT+TGG + tig0027505:12133-12152 Msa1434310:CDS 35.0%
ACTCCAAAACCAATTGTTGA+TGG - tig0027505:12160-12179 None:intergenic 35.0%
GCATGTTCAAGGTAAAAACT+TGG + tig0027505:12198-12217 Msa1434310:intron 35.0%
GATTGAAGATCTCATCACTA+GGG + tig0027505:12376-12395 Msa1434310:CDS 35.0%
AAGAAAATCCAAACACCTTC+AGG + tig0027505:12417-12436 Msa1434310:CDS 35.0%
!! AAAGGTACTATTGTACAGTG+TGG + tig0027505:12454-12473 Msa1434310:three_prime_UTR 35.0%
AAGTACATTTGAGAATTCCC+TGG + tig0027505:12510-12529 Msa1434310:three_prime_UTR 35.0%
!! TAACGACCGATTTGATTGTA+TGG - tig0027505:12667-12686 None:intergenic 35.0%
!!! GAAAGGGTTTTGAAGAATGG+CGG - tig0027505:5765-5784 None:intergenic 40.0%
!!! AGCGAAAGGGTTTTGAAGAA+TGG - tig0027505:5768-5787 None:intergenic 40.0%
! CTCCTGTCGTCAATCTTTTT+AGG + tig0027505:5903-5922 Msa1434310:intron 40.0%
ACCCTAAAAAGATTGACGAC+AGG - tig0027505:5908-5927 None:intergenic 40.0%
TCAGAAGTGAACTGAGTTTC+TGG - tig0027505:6344-6363 None:intergenic 40.0%
AGAAACTCAGTTCACTTCTG+AGG + tig0027505:6343-6362 Msa1434310:CDS 40.0%
! GTTCTGTGATGGTTGACTTA+AGG - tig0027505:6739-6758 None:intergenic 40.0%
TGTTGCGAATAATCAAGTGG+TGG - tig0027505:6787-6806 None:intergenic 40.0%
AGCTGTTGCGAATAATCAAG+TGG - tig0027505:6790-6809 None:intergenic 40.0%
GCTTTATGACAAGTACAAGG+AGG + tig0027505:6807-6826 Msa1434310:CDS 40.0%
TCAGAGATGGTTAAACCACA+AGG + tig0027505:7033-7052 Msa1434310:CDS 40.0%
ATGGTTAAACCACAAGGTCT+TGG + tig0027505:7039-7058 Msa1434310:CDS 40.0%
TAAACCACAAGGTCTTGGTT+AGG + tig0027505:7044-7063 Msa1434310:CDS 40.0%
ATAACTAACCAAATCGCGGA+AGG - tig0027505:7155-7174 None:intergenic 40.0%
!! TTCCGCGATTTGGTTAGTTA+TGG + tig0027505:7154-7173 Msa1434310:intron 40.0%
TGAGATTGGTATGGGTGAAA+TGG + tig0027505:7499-7518 Msa1434310:CDS 40.0%
ACAAAAGCAAGGCTACAATC+TGG + tig0027505:7576-7595 Msa1434310:CDS 40.0%
ATGCCCAGATTACATGCTTA+AGG + tig0027505:7613-7632 Msa1434310:CDS 40.0%
CCATTTCTGTGAATCATGGA+TGG - tig0027505:7931-7950 None:intergenic 40.0%
CCATCCATGATTCACAGAAA+TGG + tig0027505:7928-7947 Msa1434310:intron 40.0%
ACAGAAATGGACATTGTGCA+CGG + tig0027505:7941-7960 Msa1434310:intron 40.0%
! TTTGGTGACAGTGAAACATG+TGG - tig0027505:8046-8065 None:intergenic 40.0%
GTTCCCAAGAATACCATTCT+TGG + tig0027505:8519-8538 Msa1434310:intron 40.0%
!! TCTCAAGTAGCTGATTTGCA+CGG - tig0027505:8698-8717 None:intergenic 40.0%
TGCAAATCAGCTACTTGAGA+AGG + tig0027505:8698-8717 Msa1434310:CDS 40.0%
TATCATCTCTAAGCAAGGCA+CGG - tig0027505:8737-8756 None:intergenic 40.0%
TGCCTTGCTTAGAGATGATA+AGG + tig0027505:8737-8756 Msa1434310:CDS 40.0%
GTTCCAAAGCAAACATTGGA+TGG + tig0027505:8895-8914 Msa1434310:intron 40.0%
TCACCATCCAATGTTTGCTT+TGG - tig0027505:8901-8920 None:intergenic 40.0%
GTAGAATGGCATTTCAAACC+AGG - tig0027505:9012-9031 None:intergenic 40.0%
ATTTGGCATTCCTACCCAAA+TGG + tig0027505:9072-9091 Msa1434310:intron 40.0%
!! TGATTAAGTGCCATTTGGGT+AGG - tig0027505:9085-9104 None:intergenic 40.0%
TCGAATTGCTTTGTCTTAGG+TGG + tig0027505:9134-9153 Msa1434310:intron 40.0%
! CCAGTCCTTTGGGTATTTTA+TGG - tig0027505:9188-9207 None:intergenic 40.0%
CCATAAAATACCCAAAGGAC+TGG + tig0027505:9185-9204 Msa1434310:CDS 40.0%
TGCTTGAATACATTGGCAAC+CGG - tig0027505:9213-9232 None:intergenic 40.0%
!! TTGAAGGTACTGTGAAACAG+AGG - tig0027505:9431-9450 None:intergenic 40.0%
GTTTCACAGTACCTTCAACT+CGG + tig0027505:9433-9452 Msa1434310:intron 40.0%
!! GTTTAGTGGACTGATTACCA+TGG + tig0027505:9457-9476 Msa1434310:intron 40.0%
! GATCAAGTGTTGTCAAATGG+CGG + tig0027505:9561-9580 Msa1434310:intron 40.0%
ATGGCATGGCAAACATTATG+TGG - tig0027505:9611-9630 None:intergenic 40.0%
! GTTTTGCCTTCATTGATGCT+AGG + tig0027505:9660-9679 Msa1434310:intron 40.0%
GTACTTCCTAGCATCAATGA+AGG - tig0027505:9669-9688 None:intergenic 40.0%
TGAGCTTCACGACAAGTATA+TGG + tig0027505:10162-10181 Msa1434310:CDS 40.0%
CTCAACATACCTTGTGGAAA+AGG - tig0027505:10219-10238 None:intergenic 40.0%
! CTTTTCCACAAGGTATGTTG+AGG + tig0027505:10217-10236 Msa1434310:intron 40.0%
AATTGGACCATAGTGAGTGA+GGG - tig0027505:10322-10341 None:intergenic 40.0%
AATTGGACCATAGTGAGTGA+GGG - tig0027505:10322-10341 None:intergenic 40.0%
ACCATCTACCCATCAATTTG+AGG - tig0027505:10434-10453 None:intergenic 40.0%
! CAAATTGATGGGTAGATGGT+TGG + tig0027505:10434-10453 Msa1434310:intron 40.0%
TAGATGGTTGGAGGAAGAAT+AGG + tig0027505:10446-10465 Msa1434310:intron 40.0%
AGATGGTTGGAGGAAGAATA+GGG + tig0027505:10447-10466 Msa1434310:intron 40.0%
AATGTGGAAGGGAGAAAAGT+TGG + tig0027505:10482-10501 Msa1434310:intron 40.0%
AGGAATCATTTACTGAGGGA+TGG + tig0027505:10522-10541 Msa1434310:intron 40.0%
! TCTCACTTCCACCCTTTTTA+AGG - tig0027505:10739-10758 None:intergenic 40.0%
TGTGACGAAGGAAACCTAAA+CGG - tig0027505:10811-10830 None:intergenic 40.0%
GCTAATGCAAAATGTGACGA+AGG - tig0027505:10823-10842 None:intergenic 40.0%
GCTTGCATATATCAGTGACA+AGG + tig0027505:10889-10908 Msa1434310:CDS 40.0%
CAAACTCTTCTTGCATGGTT+TGG + tig0027505:10944-10963 Msa1434310:intron 40.0%
CCTGTCGAAAAGTAATCTTC+GGG - tig0027505:11029-11048 None:intergenic 40.0%
AAGTTAAAGCAGCAATGTGG+TGG + tig0027505:11085-11104 Msa1434310:CDS 40.0%
CAGTTCACATCAAAGATGGA+GGG + tig0027505:11109-11128 Msa1434310:CDS 40.0%
! GGTAAGTTGACTTTGTTTCC+AGG + tig0027505:11135-11154 Msa1434310:intron 40.0%
GAAAACTCAGATGTACATCC+AGG + tig0027505:11299-11318 Msa1434310:CDS 40.0%
TGGTAAGAACAGTAACTGTC+AGG - tig0027505:11331-11350 None:intergenic 40.0%
ACAGTTACTGTTCTTACCAC+TGG + tig0027505:11332-11351 Msa1434310:CDS 40.0%
CAGTTACTGTTCTTACCACT+GGG + tig0027505:11333-11352 Msa1434310:CDS 40.0%
! ATTGTTTCAGGTCAAGTGTG+TGG + tig0027505:11484-11503 Msa1434310:intron 40.0%
ACTTACCTGGATTTACTCAC+TGG + tig0027505:11550-11569 Msa1434310:CDS 40.0%
CTTACCTGGATTTACTCACT+GGG + tig0027505:11551-11570 Msa1434310:CDS 40.0%
GGTTGAGACAATTAACTCGA+TGG - tig0027505:11612-11631 None:intergenic 40.0%
AAGGAAGGGAATTACCTGAT+AGG - tig0027505:11633-11652 None:intergenic 40.0%
AGAGGATAAGTCTCAAGGAA+GGG - tig0027505:11647-11666 None:intergenic 40.0%
AAGAGGATAAGTCTCAAGGA+AGG - tig0027505:11648-11667 None:intergenic 40.0%
ACAGAAGAGGATAAGTCTCA+AGG - tig0027505:11652-11671 None:intergenic 40.0%
! GAACTCAAAGCTGTCATTTG+GGG - tig0027505:11883-11902 None:intergenic 40.0%
! GATTTAGAACTTAGCTAGCC+AGG + tig0027505:11966-11985 Msa1434310:intron 40.0%
GGGAAAAAGAATTGAGAACC+TGG - tig0027505:11987-12006 None:intergenic 40.0%
TTCTTCCTTTCATCAACAGG+CGG - tig0027505:12053-12072 None:intergenic 40.0%
ACCTTCTTCCTTTCATCAAC+AGG - tig0027505:12056-12075 None:intergenic 40.0%
!!! AGTTTTGGGCCATCAACAAT+TGG + tig0027505:12148-12167 Msa1434310:CDS 40.0%
GGATTGAAGATCTCATCACT+AGG + tig0027505:12375-12394 Msa1434310:CDS 40.0%
! TTTTGGATGAAGCAGACATG+AGG + tig0027505:12611-12630 Msa1434310:three_prime_UTR 40.0%
AATGGCGGTGAAAGTTCGTT+TGG - tig0027505:5750-5769 None:intergenic 45.0%
CTATGGACTCGAAAGCGAAA+GGG - tig0027505:5781-5800 None:intergenic 45.0%
AGAGACGATCGATGAAGCTA+TGG - tig0027505:5798-5817 None:intergenic 45.0%
AGAAAGGGGAATACAAACCC+TGG - tig0027505:5836-5855 None:intergenic 45.0%
TTGATGCAGCAACAATGGAC+CGG + tig0027505:6240-6259 Msa1434310:intron 45.0%
TGATCAAGGTTGGGCCTATA+TGG + tig0027505:6277-6296 Msa1434310:CDS 45.0%
GTTGGGCCTATATGGAGAAT+GGG + tig0027505:6285-6304 Msa1434310:CDS 45.0%
CGAAGTAGCGATCGAGATAA+TGG - tig0027505:7087-7106 None:intergenic 45.0%
AAAGCCCAACTGCATTGAGA+GGG - tig0027505:7129-7148 None:intergenic 45.0%
ATCATCACAGTGTAGAGCCA+TGG - tig0027505:7362-7381 None:intergenic 45.0%
ACAGATTGACAAAGAACGCG+AGG + tig0027505:7427-7446 Msa1434310:intron 45.0%
CAGATTGACAAAGAACGCGA+GGG + tig0027505:7428-7447 Msa1434310:intron 45.0%
! GAAAGTGCAACATGAGTTGC+TGG + tig0027505:8668-8687 Msa1434310:intron 45.0%
CTTAGGTGGATGATCTGTCT+AGG + tig0027505:9148-9167 Msa1434310:intron 45.0%
AATACCCAAAGGACTGGATC+CGG + tig0027505:9191-9210 Msa1434310:CDS 45.0%
GGTTGCCAATGTATTCAAGC+AGG + tig0027505:9212-9231 Msa1434310:CDS 45.0%
ATTGCAGCATATTACGGACG+AGG + tig0027505:9318-9337 Msa1434310:intron 45.0%
TTGCAGCATATTACGGACGA+GGG + tig0027505:9319-9338 Msa1434310:intron 45.0%
! TACAGCTTTGGTTCAACTGG+CGG + tig0027505:9342-9361 Msa1434310:CDS 45.0%
!! GGAAGAAAGTGCTAGCAATC+AGG + tig0027505:9363-9382 Msa1434310:CDS 45.0%
!! ACCTTCAACTCGGTGTTTAG+TGG + tig0027505:9443-9462 Msa1434310:intron 45.0%
! TCCACTAAACACCGAGTTGA+AGG - tig0027505:9447-9466 None:intergenic 45.0%
! AAACTGAGAGCGCAGACTTA+TGG - tig0027505:9530-9549 None:intergenic 45.0%
CAGAAAACTACAAGCGGTTC+TGG + tig0027505:10016-10035 Msa1434310:intron 45.0%
! GAATCACACCCTTTTCCACA+AGG + tig0027505:10207-10226 Msa1434310:CDS 45.0%
CATTGCCTCAACATACCTTG+TGG - tig0027505:10225-10244 None:intergenic 45.0%
CGTTATTGAGCTATTCCCGT+TGG + tig0027505:10249-10268 Msa1434310:intron 45.0%
ATTGGACCATAGTGAGTGAG+GGG - tig0027505:10321-10340 None:intergenic 45.0%
CAATTGGACCATAGTGAGTG+AGG - tig0027505:10323-10342 None:intergenic 45.0%
CTCACTCACTATGGTCCAAT+TGG + tig0027505:10321-10340 Msa1434310:intron 45.0%
ATTGGACCATAGTGAGTGAG+GGG - tig0027505:10321-10340 None:intergenic 45.0%
CAATTGGACCATAGTGAGTG+AGG - tig0027505:10323-10342 None:intergenic 45.0%
CTCACTCACTATGGTCCAAT+TGG + tig0027505:10321-10340 Msa1434310:intron 45.0%
! GCCTCAAATTGATGGGTAGA+TGG + tig0027505:10430-10449 Msa1434310:intron 45.0%
! ATTGATGGGTAGATGGTTGG+AGG + tig0027505:10437-10456 Msa1434310:intron 45.0%
! GAGGAAGAATAGGGTACCTA+GGG + tig0027505:10456-10475 Msa1434310:intron 45.0%
TACCTAGGGAAGAATGTGGA+AGG + tig0027505:10470-10489 Msa1434310:intron 45.0%
ACCTAGGGAAGAATGTGGAA+GGG + tig0027505:10471-10490 Msa1434310:intron 45.0%
CAAACGCTTCCTTTAATGCC+TGG - tig0027505:10646-10665 None:intergenic 45.0%
!! GGCATTAAAGGAAGCGTTTG+AGG + tig0027505:10646-10665 Msa1434310:intron 45.0%
!! CCCGAAGATTACTTTTCGAC+AGG + tig0027505:11026-11045 Msa1434310:CDS 45.0%
TGGCCAGTTCACATCAAAGA+TGG + tig0027505:11105-11124 Msa1434310:CDS 45.0%
CCTCCATCTTTGATGTGAAC+TGG - tig0027505:11111-11130 None:intergenic 45.0%
CCAGTTCACATCAAAGATGG+AGG + tig0027505:11108-11127 Msa1434310:CDS 45.0%
CACATCAAAGATGGAGGGAA+TGG + tig0027505:11114-11133 Msa1434310:CDS 45.0%
!! TCAGGTGGTTGACTTGACAT+TGG + tig0027505:11238-11257 Msa1434310:intron 45.0%
!! TGGTTGACTTGACATTGGCT+AGG + tig0027505:11243-11262 Msa1434310:CDS 45.0%
!! GGTTGACTTGACATTGGCTA+GGG + tig0027505:11244-11263 Msa1434310:CDS 45.0%
GGACAATCAGCTGAAGTTTC+AGG + tig0027505:11265-11284 Msa1434310:CDS 45.0%
GTAACTGTCAGGTCAATTCC+TGG - tig0027505:11320-11339 None:intergenic 45.0%
! CTGTTCTTACCACTGGGTTT+TGG + tig0027505:11339-11358 Msa1434310:CDS 45.0%
AGTTCCCAGTGAGTAAATCC+AGG - tig0027505:11558-11577 None:intergenic 45.0%
CTGGGAACTTGCAACATCAT+TGG + tig0027505:11569-11588 Msa1434310:CDS 45.0%
! CGCAGTGTTGAATAGTAGCA+GGG - tig0027505:11730-11749 None:intergenic 45.0%
CCTGCTACTATTCAACACTG+CGG + tig0027505:11728-11747 Msa1434310:CDS 45.0%
TTTCATCAACAGGCGGTAGA+GGG - tig0027505:12046-12065 None:intergenic 45.0%
! GCCTGTTGATGAAAGGAAGA+AGG + tig0027505:12052-12071 Msa1434310:CDS 45.0%
TTGTGCGCATCATGAAGAGT+AGG + tig0027505:12123-12142 Msa1434310:CDS 45.0%
!! GGGCCATCAACAATTGGTTT+TGG + tig0027505:12154-12173 Msa1434310:CDS 45.0%
! TTTGGAGTGTGTTGAGCAGT+TGG + tig0027505:12172-12191 Msa1434310:CDS 45.0%
TTGGAGTGTGTTGAGCAGTT+GGG + tig0027505:12173-12192 Msa1434310:CDS 45.0%
! GATTTTCTTTGTCCCTCTCC+AGG - tig0027505:12406-12425 None:intergenic 45.0%
TCCAAACACCTTCAGGTATC+TGG + tig0027505:12424-12443 Msa1434310:CDS 45.0%
TACCTATGCCAGATACCTGA+AGG - tig0027505:12435-12454 None:intergenic 45.0%
CAGGTATCTGGCATAGGTAA+AGG + tig0027505:12436-12455 Msa1434310:exon 45.0%
GTACAGTGTGGTAAGAGTTG+AGG + tig0027505:12466-12485 Msa1434310:three_prime_UTR 45.0%
!! AAAAAAAAAAAAAAAACAAA+GGG - tig0027505:8575-8594 None:intergenic 5.0%
GCTATGGACTCGAAAGCGAA+AGG - tig0027505:5782-5801 None:intergenic 50.0%
TCTTTCTTCATCGCTCTGCC+AGG + tig0027505:5815-5834 Msa1434310:five_prime_UTR 50.0%
CTTTCTTCATCGCTCTGCCA+GGG + tig0027505:5816-5835 Msa1434310:five_prime_UTR 50.0%
GGTTGGGCCTATATGGAGAA+TGG + tig0027505:6284-6303 Msa1434310:CDS 50.0%
AGCATGACGAGTTCATGCTG+AGG + tig0027505:7002-7021 Msa1434310:CDS 50.0%
GCATGACGAGTTCATGCTGA+GGG + tig0027505:7003-7022 Msa1434310:CDS 50.0%
! TGAGGGAGCTTGTTCAGAGA+TGG + tig0027505:7020-7039 Msa1434310:CDS 50.0%
ACCACAAGGTCTTGGTTAGG+TGG + tig0027505:7047-7066 Msa1434310:CDS 50.0%
AAGCCCAACTGCATTGAGAG+GGG - tig0027505:7128-7147 None:intergenic 50.0%
GAAAGCCCAACTGCATTGAG+AGG - tig0027505:7130-7149 None:intergenic 50.0%
! CAGGTTTACATGGAGGTACG+AGG + tig0027505:7302-7321 Msa1434310:intron 50.0%
GGTACGAGGCAATGCTATGA+AGG + tig0027505:7316-7335 Msa1434310:CDS 50.0%
CCTCAGCCTGTGCAATTACA+TGG - tig0027505:8296-8315 None:intergenic 50.0%
CCATGTAATTGCACAGGCTG+AGG + tig0027505:8293-8312 Msa1434310:intron 50.0%
CTCTACCACTGAGCAGAAAC+TGG + tig0027505:8359-8378 Msa1434310:CDS 50.0%
CTCAACCAGTTTCTGCTCAG+TGG - tig0027505:8367-8386 None:intergenic 50.0%
CACTGAGCAGAAACTGGTTG+AGG + tig0027505:8365-8384 Msa1434310:CDS 50.0%
!! CTACTTGAGAAGGAGCACTC+AGG + tig0027505:8708-8727 Msa1434310:CDS 50.0%
! GGGTACAGCTTTGGTTCAAC+TGG + tig0027505:9339-9358 Msa1434310:CDS 50.0%
ACTGAAGCGCATTTGGCAGA+TGG - tig0027505:9630-9649 None:intergenic 50.0%
! GTTTTGCCTTCTACCGACAC+TGG + tig0027505:9918-9937 Msa1434310:intron 50.0%
!! AATGCACCAGTGTCGGTAGA+AGG - tig0027505:9927-9946 None:intergenic 50.0%
!! TACAAGCGGTTCTGGCTTTC+AGG + tig0027505:10024-10043 Msa1434310:intron 50.0%
! TTTTGGCCCCTCACTCACTA+TGG + tig0027505:10312-10331 Msa1434310:intron 50.0%
! TTTTGGCCCCTCACTCACTA+TGG + tig0027505:10312-10331 Msa1434310:intron 50.0%
! GGAGGAAGAATAGGGTACCT+AGG + tig0027505:10455-10474 Msa1434310:intron 50.0%
! AGGGTACCTAGGGAAGAATG+TGG + tig0027505:10466-10485 Msa1434310:intron 50.0%
TCCCTTCCACATTCTTCCCT+AGG - tig0027505:10475-10494 None:intergenic 50.0%
TCATTTACTGAGGGATGGCC+TGG + tig0027505:10527-10546 Msa1434310:intron 50.0%
CATTTACTGAGGGATGGCCT+GGG + tig0027505:10528-10547 Msa1434310:intron 50.0%
GAAGGGGCAGGAACATAACT+AGG + tig0027505:10554-10573 Msa1434310:intron 50.0%
TCTTAACCTCCCTTCGGAGA+TGG + tig0027505:11382-11401 Msa1434310:CDS 50.0%
ATGCTCCTACCATCTCCGAA+GGG - tig0027505:11394-11413 None:intergenic 50.0%
TATGCTCCTACCATCTCCGA+AGG - tig0027505:11395-11414 None:intergenic 50.0%
! CCGCAGTGTTGAATAGTAGC+AGG - tig0027505:11731-11750 None:intergenic 50.0%
CTTTCATCAACAGGCGGTAG+AGG - tig0027505:12047-12066 None:intergenic 50.0%
! CTCTACCGCCTGTTGATGAA+AGG + tig0027505:12045-12064 Msa1434310:CDS 50.0%
TGGAGTGTGTTGAGCAGTTG+GGG + tig0027505:12174-12193 Msa1434310:CDS 50.0%
TCTCATCACTAGGGACTACC+TGG + tig0027505:12385-12404 Msa1434310:CDS 50.0%
!! GCCAGATACCTGAAGGTGTT+TGG - tig0027505:12428-12447 None:intergenic 50.0%
CACCTTCAGGTATCTGGCAT+AGG + tig0027505:12430-12449 Msa1434310:CDS 50.0%
GCCACCTAACCAAGACCTTG+TGG - tig0027505:7051-7070 None:intergenic 55.0%
AACTGCATTGAGAGGGGGCA+GGG - tig0027505:7122-7141 None:intergenic 55.0%
TGCCCCCTCTCAATGCAGTT+GGG + tig0027505:7122-7141 Msa1434310:CDS 55.0%
AGCCCAACTGCATTGAGAGG+GGG - tig0027505:7127-7146 None:intergenic 55.0%
GCTTTCTGCCTTCCGCGATT+TGG + tig0027505:7144-7163 Msa1434310:CDS 55.0%
TCTGCTCAGTGGTAGAGTGC+AGG - tig0027505:8356-8375 None:intergenic 55.0%
GCAACCGGATCCAGTCCTTT+GGG - tig0027505:9198-9217 None:intergenic 55.0%
! TACGGACGAGGGTACAGCTT+TGG + tig0027505:9330-9349 Msa1434310:CDS 55.0%
! GAGAGCGCAGACTTATGGCA+TGG - tig0027505:9525-9544 None:intergenic 55.0%
! GTTGTCAAATGGCGGAGCTG+TGG + tig0027505:9569-9588 Msa1434310:intron 55.0%
AGCGCATTTGGCAGATGGCA+TGG - tig0027505:9625-9644 None:intergenic 55.0%
AGGGATGGCCTGGGAAAGAA+GGG + tig0027505:10537-10556 Msa1434310:intron 55.0%
GTAGCTAGGCCAAAACCCAG+TGG - tig0027505:11351-11370 None:intergenic 55.0%
AACCTCCCTTCGGAGATGGT+AGG + tig0027505:11386-11405 Msa1434310:intron 55.0%
ACAGGCGGTAGAGGGATCTA+TGG - tig0027505:12038-12057 None:intergenic 55.0%
TCACTAGGGACTACCTGGAG+AGG + tig0027505:12390-12409 Msa1434310:CDS 55.0%
CACTAGGGACTACCTGGAGA+GGG + tig0027505:12391-12410 Msa1434310:CDS 55.0%
CAACTGCATTGAGAGGGGGC+AGG - tig0027505:7123-7142 None:intergenic 60.0%
CTGCCCCCTCTCAATGCAGT+TGG + tig0027505:7121-7140 Msa1434310:CDS 60.0%
GGCAACCGGATCCAGTCCTT+TGG - tig0027505:9199-9218 None:intergenic 60.0%
GAGGGATGGCCTGGGAAAGA+AGG + tig0027505:10536-10555 Msa1434310:intron 60.0%
GGGATGGCCTGGGAAAGAAG+GGG + tig0027505:10538-10557 Msa1434310:intron 60.0%
GTTCCTGCCCCTTCTTTCCC+AGG - tig0027505:10548-10567 None:intergenic 60.0%
CTCCTACCATCTCCGAAGGG+AGG - tig0027505:11391-11410 None:intergenic 60.0%
GCAGTTGGGGCGCATGTTCA+AGG + tig0027505:12187-12206 Msa1434310:CDS 60.0%
TGGCCTGGGAAAGAAGGGGC+AGG + tig0027505:10542-10561 Msa1434310:intron 65.0%
Chromosome Type Strat End Strand Name
tig0027505 gene 5722 12748 5722 ID=Msa1434310;Name=Msa1434310
tig0027505 mRNA 5722 12748 5722 ID=Msa1434310-mRNA-1;Parent=Msa1434310;Name=Msa1434310-mRNA-1;_AED=0.13;_eAED=0.13;_QI=121|0.94|1|1|0.89|0.8|20|276|728
tig0027505 exon 5722 5837 5722 ID=Msa1434310-mRNA-1:exon:9094;Parent=Msa1434310-mRNA-1
tig0027505 exon 6249 6384 6249 ID=Msa1434310-mRNA-1:exon:9095;Parent=Msa1434310-mRNA-1
tig0027505 exon 6756 6855 6756 ID=Msa1434310-mRNA-1:exon:9096;Parent=Msa1434310-mRNA-1
tig0027505 exon 6980 7165 6980 ID=Msa1434310-mRNA-1:exon:9097;Parent=Msa1434310-mRNA-1
tig0027505 exon 7305 7352 7305 ID=Msa1434310-mRNA-1:exon:9098;Parent=Msa1434310-mRNA-1
tig0027505 exon 7431 7634 7431 ID=Msa1434310-mRNA-1:exon:9099;Parent=Msa1434310-mRNA-1
tig0027505 exon 8309 8386 8309 ID=Msa1434310-mRNA-1:exon:9100;Parent=Msa1434310-mRNA-1
tig0027505 exon 8669 8758 8669 ID=Msa1434310-mRNA-1:exon:9101;Parent=Msa1434310-mRNA-1
tig0027505 exon 9153 9233 9153 ID=Msa1434310-mRNA-1:exon:9102;Parent=Msa1434310-mRNA-1
tig0027505 exon 9325 9384 9325 ID=Msa1434310-mRNA-1:exon:9103;Parent=Msa1434310-mRNA-1
tig0027505 exon 10142 10228 10142 ID=Msa1434310-mRNA-1:exon:9104;Parent=Msa1434310-mRNA-1
tig0027505 exon 10647 10796 10647 ID=Msa1434310-mRNA-1:exon:9105;Parent=Msa1434310-mRNA-1
tig0027505 exon 10878 10933 10878 ID=Msa1434310-mRNA-1:exon:9106;Parent=Msa1434310-mRNA-1
tig0027505 exon 11015 11135 11015 ID=Msa1434310-mRNA-1:exon:9107;Parent=Msa1434310-mRNA-1
tig0027505 exon 11242 11403 11242 ID=Msa1434310-mRNA-1:exon:9108;Parent=Msa1434310-mRNA-1
tig0027505 exon 11494 11637 11494 ID=Msa1434310-mRNA-1:exon:9109;Parent=Msa1434310-mRNA-1
tig0027505 exon 11720 11938 11720 ID=Msa1434310-mRNA-1:exon:9110;Parent=Msa1434310-mRNA-1
tig0027505 exon 12041 12208 12041 ID=Msa1434310-mRNA-1:exon:9111;Parent=Msa1434310-mRNA-1
tig0027505 exon 12350 12486 12350 ID=Msa1434310-mRNA-1:exon:9112;Parent=Msa1434310-mRNA-1
tig0027505 exon 12508 12748 12508 ID=Msa1434310-mRNA-1:exon:9113;Parent=Msa1434310-mRNA-1
tig0027505 five_prime_UTR 5722 5837 5722 ID=Msa1434310-mRNA-1:five_prime_utr;Parent=Msa1434310-mRNA-1
tig0027505 five_prime_UTR 6249 6253 6249 ID=Msa1434310-mRNA-1:five_prime_utr;Parent=Msa1434310-mRNA-1
tig0027505 CDS 6254 6384 6254 ID=Msa1434310-mRNA-1:cds;Parent=Msa1434310-mRNA-1
tig0027505 CDS 6756 6855 6756 ID=Msa1434310-mRNA-1:cds;Parent=Msa1434310-mRNA-1
tig0027505 CDS 6980 7165 6980 ID=Msa1434310-mRNA-1:cds;Parent=Msa1434310-mRNA-1
tig0027505 CDS 7305 7352 7305 ID=Msa1434310-mRNA-1:cds;Parent=Msa1434310-mRNA-1
tig0027505 CDS 7431 7634 7431 ID=Msa1434310-mRNA-1:cds;Parent=Msa1434310-mRNA-1
tig0027505 CDS 8309 8386 8309 ID=Msa1434310-mRNA-1:cds;Parent=Msa1434310-mRNA-1
tig0027505 CDS 8669 8758 8669 ID=Msa1434310-mRNA-1:cds;Parent=Msa1434310-mRNA-1
tig0027505 CDS 9153 9233 9153 ID=Msa1434310-mRNA-1:cds;Parent=Msa1434310-mRNA-1
tig0027505 CDS 9325 9384 9325 ID=Msa1434310-mRNA-1:cds;Parent=Msa1434310-mRNA-1
tig0027505 CDS 10142 10228 10142 ID=Msa1434310-mRNA-1:cds;Parent=Msa1434310-mRNA-1
tig0027505 CDS 10647 10796 10647 ID=Msa1434310-mRNA-1:cds;Parent=Msa1434310-mRNA-1
tig0027505 CDS 10878 10933 10878 ID=Msa1434310-mRNA-1:cds;Parent=Msa1434310-mRNA-1
tig0027505 CDS 11015 11135 11015 ID=Msa1434310-mRNA-1:cds;Parent=Msa1434310-mRNA-1
tig0027505 CDS 11242 11403 11242 ID=Msa1434310-mRNA-1:cds;Parent=Msa1434310-mRNA-1
tig0027505 CDS 11494 11637 11494 ID=Msa1434310-mRNA-1:cds;Parent=Msa1434310-mRNA-1
tig0027505 CDS 11720 11938 11720 ID=Msa1434310-mRNA-1:cds;Parent=Msa1434310-mRNA-1
tig0027505 CDS 12041 12208 12041 ID=Msa1434310-mRNA-1:cds;Parent=Msa1434310-mRNA-1
tig0027505 CDS 12350 12451 12350 ID=Msa1434310-mRNA-1:cds;Parent=Msa1434310-mRNA-1
tig0027505 three_prime_UTR 12452 12486 12452 ID=Msa1434310-mRNA-1:three_prime_utr;Parent=Msa1434310-mRNA-1
tig0027505 three_prime_UTR 12508 12748 12508 ID=Msa1434310-mRNA-1:three_prime_utr;Parent=Msa1434310-mRNA-1
Gene Sequence

>Msa1434310

ATGGACCGGAAAGTCATTGATTTTGATCAAGGTTGGGCCTATATGGAGAATGGGATTAAGAAATTGAAGAGAATTCTCGAAGGATTACCAGAAACTCAGTTCACTTCTGAGGAATATATGATGCTGTACACAACCATCTATAATATGTGTACTCAGAAGCCACCACTTGATTATTCGCAACAGCTTTATGACAAGTACAAGGAGGTTTTTGATGAATACATTAGATCTACGGTTTTGTCTGCTGTAAGAGATAAGCATGACGAGTTCATGCTGAGGGAGCTTGTTCAGAGATGGTTAAACCACAAGGTCTTGGTTAGGTGGCTTTCACGCTTCTTCCATTATCTCGATCGCTACTTCGTTGCTCGACGTTCCCTGCCCCCTCTCAATGCAGTTGGGCTTTCTGCCTTCCGCGATTTGGTTTACATGGAGGTACGAGGCAATGCTATGAAGGCTGTGATTGTTCTTATTGACAAAGAACGCGAGGGCGAGCAGATTGATAGATCATTGTTGAAAAATGTTCTGGACATATTTGTTGAGATTGGTATGGGTGAAATGGTGCTTTATGAAACAGATTTCGAGGCACACATGCTTGAAGATACTGCAGATTACTACAAAAGCAAGGCTACAATCTGGATCGAGTCTGACTCATGCCCAGATTACATGCTTAAGGCTGAGGATTGCTTGAGACGAGAGAGAGATAGAGTGTCTCACTACCTGCACTCTACCACTGAGCAGAAACTGGTTGAGAAAGTGCAACATGAGTTGCTGGTAAACCGTGCAAATCAGCTACTTGAGAAGGAGCACTCAGGCTGCCGTGCCTTGCTTAGAGATGATAAGGTGGATGATCTGTCTAGGATGTATAGACTGTACCATAAAATACCCAAAGGACTGGATCCGGTTGCCAATGTATTCAAGCAGCATATTACGGACGAGGGTACAGCTTTGGTTCAACTGGCGGAAGAAAGTGCTAGCAATCAGGTCCTTATCAGAAAATTCATTGAGCTTCACGACAAGTATATGGCATATGTCAATAATTGTTTTATGAATCACACCCTTTTCCACAAGGCATTAAAGGAAGCGTTTGAGGTATTTTGCAATAAAACTGTTGCTGGTAGTTCCAGTGCAGAACTATTATCTTCATTCTGTGATAATATCCTTAAAAAGGGTGGAAGTGAGAAGATGAGCGATGAAGCCATTGAAGAAACACTTGAGAAGGTAGTGAAGCTGCTTGCATATATCAGTGACAAGGATCTCTTTGCAGAATTTTACAGGAAGAAGCTTGCCCGAAGATTACTTTTCGACAGGAGTGCTAATGATGAACATGAGAAGTGTATTTTGACAAAGTTAAAGCAGCAATGTGGTGGCCAGTTCACATCAAAGATGGAGGGAATGGTGGTTGACTTGACATTGGCTAGGGACAATCAGCTGAAGTTTCAGGAATATCTTAGTGAAAACTCAGATGTACATCCAGGAATTGACCTGACAGTTACTGTTCTTACCACTGGGTTTTGGCCTAGCTACAAGTCTTTTGATCTTAACCTCCCTTCGGAGATGGTCAAGTGTGTGGAAGTTTTTAAGGGCTTTTATGAAACAAAGACAAAACATAGAAAACTTACCTGGATTTACTCACTGGGAACTTGCAACATCATTGGCAAGTTTGAGCCAAAAACCATCGAGTTAATTGTCTCAACCTATCAGGCTGCTGCCCTGCTACTATTCAACACTGCGGATAAGCTGAGTTATTCAGAGATTATGACTCAGCTGAATTTGACTAATGAAGACCTAGTTAGATTGCTTCATTCTCTATCTTGTGCAAAGTATAAGATACTTGCTAAGGAGCCTAATACTAGAACAATATCCCCAAATGACAGCTTTGAGTTCAATTCCAAATTTACTGATAAAATGAGAAGGATAAAGATCCCTCTACCGCCTGTTGATGAAAGGAAGAAGGTTATTGAAGACGTTGACAAAGATAGGCGATATGCTATTGATGCAGCAATTGTGCGCATCATGAAGAGTAGGAAAGTTTTGGGCCATCAACAATTGGTTTTGGAGTGTGTTGAGCAGTTGGGGCGCATGTTCAAGCCTGACATCAAAGCAATAAAGAAGCGGATTGAAGATCTCATCACTAGGGACTACCTGGAGAGGGACAAAGAAAATCCAAACACCTTCAGGTATCTGGCATAG
Protein sequence

>Msa1434310

MDRKVIDFDQGWAYMENGIKKLKRILEGLPETQFTSEEYMMLYTTIYNMCTQKPPLDYSQQLYDKYKEVFDEYIRSTVLSAVRDKHDEFMLRELVQRWLNHKVLVRWLSRFFHYLDRYFVARRSLPPLNAVGLSAFRDLVYMEVRGNAMKAVIVLIDKEREGEQIDRSLLKNVLDIFVEIGMGEMVLYETDFEAHMLEDTADYYKSKATIWIESDSCPDYMLKAEDCLRRERDRVSHYLHSTTEQKLVEKVQHELLVNRANQLLEKEHSGCRALLRDDKVDDLSRMYRLYHKIPKGLDPVANVFKQHITDEGTALVQLAEESASNQVLIRKFIELHDKYMAYVNNCFMNHTLFHKALKEAFEVFCNKTVAGSSSAELLSSFCDNILKKGGSEKMSDEAIEETLEKVVKLLAYISDKDLFAEFYRKKLARRLLFDRSANDEHEKCILTKLKQQCGGQFTSKMEGMVVDLTLARDNQLKFQEYLSENSDVHPGIDLTVTVLTTGFWPSYKSFDLNLPSEMVKCVEVFKGFYETKTKHRKLTWIYSLGTCNIIGKFEPKTIELIVSTYQAAALLLFNTADKLSYSEIMTQLNLTNEDLVRLLHSLSCAKYKILAKEPNTRTISPNDSFEFNSKFTDKMRRIKIPLPPVDERKKVIEDVDKDRRYAIDAAIVRIMKSRKVLGHQQLVLECVEQLGRMFKPDIKAIKKRIEDLITRDYLERDKENPNTFRYLA*