AlfalfaGEDB | Msa1434310

M. sativa cultivar zhongmu-4 / Msa1434310

KEGG: K03347
GO: GO:0000003 GO:0000151 GO:0000228 GO:0000793 GO:0000794 GO:0001101 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0005819 GO:0005829 GO:0005856 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009524 GO:0009719 GO:0009725 GO:0009733 GO:0009753 GO:0009755 GO:0009790 GO:0009791 GO:0009793 GO:0009867 GO:0009888 GO:0009987 GO:0010033 GO:0010087 GO:0010154 GO:0015630 GO:0019899 GO:0022414 GO:0023052 GO:0031461 GO:0031625 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032870 GO:0032991 GO:0042221 GO:0042752 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044389 GO:0044422 GO:0044424 GO:0044428 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0048316 GO:0048366 GO:0048367 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0061458 GO:0065007 GO:0070013 GO:0070887 GO:0071229 GO:0071310 GO:0071395 GO:0071495 GO:0099402 GO:1901700 GO:1901701 GO:1902494 GO:1990234
PFAM: PF00888.25

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1434310	AES82101.2	98.231	735	6	1	1	728	1	735	0.0	1491

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1434310	sp\|Q94AH6\|CUL1_ARATH	81.030	738	130	1	1	728	1	738	0.0	1261

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1434310	G7KRT0	98.231	735	6	1	1	728	1	735	0.0	1491

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa1081730	Msa1434310	0.947595	4.951489e-106	-8.615850e-47
Msa1166150	Msa1434310	0.990429	1.356867e-182	-8.615850e-47
Msa1166250	Msa1434310	0.988924	5.739174e-176	-8.615850e-47
Msa1180500	Msa1434310	0.812152	4.894989e-51	-8.615850e-47
Msa1312520	Msa1434310	0.806484	8.042394e-50	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1434310	MtrunA17_Chr2g0296381	79.324	740	140	1	2	728	3	742	0.0	1241
Msa1434310	MtrunA17_Chr4g0067011	79.054	740	142	1	2	728	5	744	0.0	1237
Msa1434310	MtrunA17_Chr7g0268881	99.743	389	1	0	340	728	1	389	0.0	804
Msa1434310	MtrunA17_Chr7g0268891	98.466	326	5	0	1	326	1	326	0.0	672
Msa1434310	MtrunA17_Chr8g0361901	34.247	730	447	12	9	728	25	731	8.10e-136	417
Msa1434310	MtrunA17_Chr6g0453061	34.153	732	446	14	9	728	23	730	2.39e-131	405
Msa1434310	MtrunA17_Chr1g0166181	34.294	729	451	13	9	728	30	739	1.31e-126	394
Msa1434310	MtrunA17_Chr5g0416711	34.060	734	443	13	9	728	26	732	3.24e-126	392
Msa1434310	MtrunA17_Chr1g0166131	33.882	729	454	13	9	728	31	740	1.12e-122	384
Msa1434310	MtrunA17_Chr6g0453081	33.666	701	432	13	42	728	49	730	4.08e-122	382

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1434310	AT4G02570.4	81.030	738	130	1	1	728	1	738	0.0	1261
Msa1434310	AT4G02570.2	81.030	738	130	1	1	728	1	738	0.0	1261
Msa1434310	AT4G02570.1	81.030	738	130	1	1	728	1	738	0.0	1261
Msa1434310	AT4G02570.3	81.030	738	130	1	1	728	1	738	0.0	1261
Msa1434310	AT1G02980.1	66.442	742	235	3	1	728	1	742	0.0	1032
Msa1434310	AT1G02980.2	66.442	742	235	3	1	728	1	742	0.0	1032
Msa1434310	AT1G43140.1	65.986	735	220	3	1	728	10	721	0.0	1004
Msa1434310	AT1G59790.2	58.537	369	143	4	6	372	12	372	6.11e-147	434
Msa1434310	AT1G59790.1	58.924	353	137	3	6	356	12	358	5.38e-142	421
Msa1434310	AT1G26830.1	34.153	732	445	13	9	728	26	732	6.70e-135	416

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Find 170 sgRNAs with CRISPR-Local

Find 470 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGCCCAACTGCATTGAGA+GGG	0.607250	tig0027505:-7126	None:intergenic
AAAGGTACTATTGTACAGTG+TGG	0.707922	tig0027505:+12454	Msa1434310:three_prime_UTR
AAAGTATAAGATACTTGCTA+AGG	0.590502	tig0027505:+11836	Msa1434310:CDS
AAATTGAAGAGAATTCTCGA+AGG	0.694732	tig0027505:+6314	Msa1434310:CDS
AAGAAAATCCAAACACCTTC+AGG	0.353220	tig0027505:+12417	Msa1434310:CDS
AAGCCCAACTGCATTGAGAG+GGG	0.653677	tig0027505:-7125	None:intergenic
AAGGAAGGGAATTACCTGAT+AGG	0.495069	tig0027505:-11630	None:intergenic
AAGTACATTTGAGAATTCCC+TGG	0.564980	tig0027505:+12510	Msa1434310:three_prime_UTR
AAGTTAAAGCAGCAATGTGG+TGG	0.605153	tig0027505:+11085	Msa1434310:CDS
AATACCCAAAGGACTGGATC+CGG	0.533694	tig0027505:+9191	Msa1434310:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ATGAAAGGTTAGATGAGAAA+GGG	-	tig0027505:5851-5870	None:intergenic	30.0%
AATGAAAGGTTAGATGAGAA+AGG	-	tig0027505:5852-5871	None:intergenic	30.0%
AAGAAATGATCGAGAATGAA+AGG	-	tig0027505:5866-5885	None:intergenic	30.0%
GATTACATACATATGAACGT+AGG	-	tig0027505:6124-6143	None:intergenic	30.0%
GATCAAAATCAATGACTTTC+CGG	-	tig0027505:6262-6281	None:intergenic	30.0%
AAATTGAAGAGAATTCTCGA+AGG	+	tig0027505:6314-6333	Msa1434310:CDS	30.0%
TGGATTATGTTTGATTGCTT+TGG	+	tig0027505:6503-6522	Msa1434310:intron	30.0%
CTGAGTACACATATTATAGA+TGG	-	tig0027505:6761-6780	None:intergenic	30.0%
AATACATTAGATCTACGGTA+GGG	+	tig0027505:6839-6858	Msa1434310:intron	30.0%
AAGAAAAACATAAACAGTGG+AGG	-	tig0027505:6868-6887	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
tig0027505	gene	5722	12748	5722	ID=Msa1434310;Name=Msa1434310
tig0027505	mRNA	5722	12748	5722	ID=Msa1434310-mRNA-1;Parent=Msa1434310;Name=Msa1434310-mRNA-1;_AED=0.13;_eAED=0.13;_QI=121\|0.94\|1\|1\|0.89\|0.8\|20\|276\|728
tig0027505	exon	5722	5837	5722	ID=Msa1434310-mRNA-1:exon:9094;Parent=Msa1434310-mRNA-1
tig0027505	exon	6249	6384	6249	ID=Msa1434310-mRNA-1:exon:9095;Parent=Msa1434310-mRNA-1
tig0027505	exon	6756	6855	6756	ID=Msa1434310-mRNA-1:exon:9096;Parent=Msa1434310-mRNA-1
tig0027505	exon	6980	7165	6980	ID=Msa1434310-mRNA-1:exon:9097;Parent=Msa1434310-mRNA-1
tig0027505	exon	7305	7352	7305	ID=Msa1434310-mRNA-1:exon:9098;Parent=Msa1434310-mRNA-1
tig0027505	exon	7431	7634	7431	ID=Msa1434310-mRNA-1:exon:9099;Parent=Msa1434310-mRNA-1
tig0027505	exon	8309	8386	8309	ID=Msa1434310-mRNA-1:exon:9100;Parent=Msa1434310-mRNA-1
tig0027505	exon	8669	8758	8669	ID=Msa1434310-mRNA-1:exon:9101;Parent=Msa1434310-mRNA-1
tig0027505	exon	9153	9233	9153	ID=Msa1434310-mRNA-1:exon:9102;Parent=Msa1434310-mRNA-1
tig0027505	exon	9325	9384	9325	ID=Msa1434310-mRNA-1:exon:9103;Parent=Msa1434310-mRNA-1
tig0027505	exon	10142	10228	10142	ID=Msa1434310-mRNA-1:exon:9104;Parent=Msa1434310-mRNA-1
tig0027505	exon	10647	10796	10647	ID=Msa1434310-mRNA-1:exon:9105;Parent=Msa1434310-mRNA-1
tig0027505	exon	10878	10933	10878	ID=Msa1434310-mRNA-1:exon:9106;Parent=Msa1434310-mRNA-1
tig0027505	exon	11015	11135	11015	ID=Msa1434310-mRNA-1:exon:9107;Parent=Msa1434310-mRNA-1
tig0027505	exon	11242	11403	11242	ID=Msa1434310-mRNA-1:exon:9108;Parent=Msa1434310-mRNA-1
tig0027505	exon	11494	11637	11494	ID=Msa1434310-mRNA-1:exon:9109;Parent=Msa1434310-mRNA-1
tig0027505	exon	11720	11938	11720	ID=Msa1434310-mRNA-1:exon:9110;Parent=Msa1434310-mRNA-1
tig0027505	exon	12041	12208	12041	ID=Msa1434310-mRNA-1:exon:9111;Parent=Msa1434310-mRNA-1
tig0027505	exon	12350	12486	12350	ID=Msa1434310-mRNA-1:exon:9112;Parent=Msa1434310-mRNA-1
tig0027505	exon	12508	12748	12508	ID=Msa1434310-mRNA-1:exon:9113;Parent=Msa1434310-mRNA-1
tig0027505	five_prime_UTR	5722	5837	5722	ID=Msa1434310-mRNA-1:five_prime_utr;Parent=Msa1434310-mRNA-1
tig0027505	five_prime_UTR	6249	6253	6249	ID=Msa1434310-mRNA-1:five_prime_utr;Parent=Msa1434310-mRNA-1
tig0027505	CDS	6254	6384	6254	ID=Msa1434310-mRNA-1:cds;Parent=Msa1434310-mRNA-1
tig0027505	CDS	6756	6855	6756	ID=Msa1434310-mRNA-1:cds;Parent=Msa1434310-mRNA-1
tig0027505	CDS	6980	7165	6980	ID=Msa1434310-mRNA-1:cds;Parent=Msa1434310-mRNA-1
tig0027505	CDS	7305	7352	7305	ID=Msa1434310-mRNA-1:cds;Parent=Msa1434310-mRNA-1
tig0027505	CDS	7431	7634	7431	ID=Msa1434310-mRNA-1:cds;Parent=Msa1434310-mRNA-1
tig0027505	CDS	8309	8386	8309	ID=Msa1434310-mRNA-1:cds;Parent=Msa1434310-mRNA-1
tig0027505	CDS	8669	8758	8669	ID=Msa1434310-mRNA-1:cds;Parent=Msa1434310-mRNA-1
tig0027505	CDS	9153	9233	9153	ID=Msa1434310-mRNA-1:cds;Parent=Msa1434310-mRNA-1
tig0027505	CDS	9325	9384	9325	ID=Msa1434310-mRNA-1:cds;Parent=Msa1434310-mRNA-1
tig0027505	CDS	10142	10228	10142	ID=Msa1434310-mRNA-1:cds;Parent=Msa1434310-mRNA-1
tig0027505	CDS	10647	10796	10647	ID=Msa1434310-mRNA-1:cds;Parent=Msa1434310-mRNA-1
tig0027505	CDS	10878	10933	10878	ID=Msa1434310-mRNA-1:cds;Parent=Msa1434310-mRNA-1
tig0027505	CDS	11015	11135	11015	ID=Msa1434310-mRNA-1:cds;Parent=Msa1434310-mRNA-1
tig0027505	CDS	11242	11403	11242	ID=Msa1434310-mRNA-1:cds;Parent=Msa1434310-mRNA-1
tig0027505	CDS	11494	11637	11494	ID=Msa1434310-mRNA-1:cds;Parent=Msa1434310-mRNA-1
tig0027505	CDS	11720	11938	11720	ID=Msa1434310-mRNA-1:cds;Parent=Msa1434310-mRNA-1
tig0027505	CDS	12041	12208	12041	ID=Msa1434310-mRNA-1:cds;Parent=Msa1434310-mRNA-1
tig0027505	CDS	12350	12451	12350	ID=Msa1434310-mRNA-1:cds;Parent=Msa1434310-mRNA-1
tig0027505	three_prime_UTR	12452	12486	12452	ID=Msa1434310-mRNA-1:three_prime_utr;Parent=Msa1434310-mRNA-1
tig0027505	three_prime_UTR	12508	12748	12508	ID=Msa1434310-mRNA-1:three_prime_utr;Parent=Msa1434310-mRNA-1

Gene Sequence

>Msa1434310

ATGGACCGGAAAGTCATTGATTTTGATCAAGGTTGGGCCTATATGGAGAATGGGATTAAGAAATTGAAGAGAATTCTCGAAGGATTACCAGAAACTCAGTTCACTTCTGAGGAATATATGATGCTGTACACAACCATCTATAATATGTGTACTCAGAAGCCACCACTTGATTATTCGCAACAGCTTTATGACAAGTACAAGGAGGTTTTTGATGAATACATTAGATCTACGGTTTTGTCTGCTGTAAGAGATAAGCATGACGAGTTCATGCTGAGGGAGCTTGTTCAGAGATGGTTAAACCACAAGGTCTTGGTTAGGTGGCTTTCACGCTTCTTCCATTATCTCGATCGCTACTTCGTTGCTCGACGTTCCCTGCCCCCTCTCAATGCAGTTGGGCTTTCTGCCTTCCGCGATTTGGTTTACATGGAGGTACGAGGCAATGCTATGAAGGCTGTGATTGTTCTTATTGACAAAGAACGCGAGGGCGAGCAGATTGATAGATCATTGTTGAAAAATGTTCTGGACATATTTGTTGAGATTGGTATGGGTGAAATGGTGCTTTATGAAACAGATTTCGAGGCACACATGCTTGAAGATACTGCAGATTACTACAAAAGCAAGGCTACAATCTGGATCGAGTCTGACTCATGCCCAGATTACATGCTTAAGGCTGAGGATTGCTTGAGACGAGAGAGAGATAGAGTGTCTCACTACCTGCACTCTACCACTGAGCAGAAACTGGTTGAGAAAGTGCAACATGAGTTGCTGGTAAACCGTGCAAATCAGCTACTTGAGAAGGAGCACTCAGGCTGCCGTGCCTTGCTTAGAGATGATAAGGTGGATGATCTGTCTAGGATGTATAGACTGTACCATAAAATACCCAAAGGACTGGATCCGGTTGCCAATGTATTCAAGCAGCATATTACGGACGAGGGTACAGCTTTGGTTCAACTGGCGGAAGAAAGTGCTAGCAATCAGGTCCTTATCAGAAAATTCATTGAGCTTCACGACAAGTATATGGCATATGTCAATAATTGTTTTATGAATCACACCCTTTTCCACAAGGCATTAAAGGAAGCGTTTGAGGTATTTTGCAATAAAACTGTTGCTGGTAGTTCCAGTGCAGAACTATTATCTTCATTCTGTGATAATATCCTTAAAAAGGGTGGAAGTGAGAAGATGAGCGATGAAGCCATTGAAGAAACACTTGAGAAGGTAGTGAAGCTGCTTGCATATATCAGTGACAAGGATCTCTTTGCAGAATTTTACAGGAAGAAGCTTGCCCGAAGATTACTTTTCGACAGGAGTGCTAATGATGAACATGAGAAGTGTATTTTGACAAAGTTAAAGCAGCAATGTGGTGGCCAGTTCACATCAAAGATGGAGGGAATGGTGGTTGACTTGACATTGGCTAGGGACAATCAGCTGAAGTTTCAGGAATATCTTAGTGAAAACTCAGATGTACATCCAGGAATTGACCTGACAGTTACTGTTCTTACCACTGGGTTTTGGCCTAGCTACAAGTCTTTTGATCTTAACCTCCCTTCGGAGATGGTCAAGTGTGTGGAAGTTTTTAAGGGCTTTTATGAAACAAAGACAAAACATAGAAAACTTACCTGGATTTACTCACTGGGAACTTGCAACATCATTGGCAAGTTTGAGCCAAAAACCATCGAGTTAATTGTCTCAACCTATCAGGCTGCTGCCCTGCTACTATTCAACACTGCGGATAAGCTGAGTTATTCAGAGATTATGACTCAGCTGAATTTGACTAATGAAGACCTAGTTAGATTGCTTCATTCTCTATCTTGTGCAAAGTATAAGATACTTGCTAAGGAGCCTAATACTAGAACAATATCCCCAAATGACAGCTTTGAGTTCAATTCCAAATTTACTGATAAAATGAGAAGGATAAAGATCCCTCTACCGCCTGTTGATGAAAGGAAGAAGGTTATTGAAGACGTTGACAAAGATAGGCGATATGCTATTGATGCAGCAATTGTGCGCATCATGAAGAGTAGGAAAGTTTTGGGCCATCAACAATTGGTTTTGGAGTGTGTTGAGCAGTTGGGGCGCATGTTCAAGCCTGACATCAAAGCAATAAAGAAGCGGATTGAAGATCTCATCACTAGGGACTACCTGGAGAGGGACAAAGAAAATCCAAACACCTTCAGGTATCTGGCATAG

Protein sequence

>Msa1434310

MDRKVIDFDQGWAYMENGIKKLKRILEGLPETQFTSEEYMMLYTTIYNMCTQKPPLDYSQQLYDKYKEVFDEYIRSTVLSAVRDKHDEFMLRELVQRWLNHKVLVRWLSRFFHYLDRYFVARRSLPPLNAVGLSAFRDLVYMEVRGNAMKAVIVLIDKEREGEQIDRSLLKNVLDIFVEIGMGEMVLYETDFEAHMLEDTADYYKSKATIWIESDSCPDYMLKAEDCLRRERDRVSHYLHSTTEQKLVEKVQHELLVNRANQLLEKEHSGCRALLRDDKVDDLSRMYRLYHKIPKGLDPVANVFKQHITDEGTALVQLAEESASNQVLIRKFIELHDKYMAYVNNCFMNHTLFHKALKEAFEVFCNKTVAGSSSAELLSSFCDNILKKGGSEKMSDEAIEETLEKVVKLLAYISDKDLFAEFYRKKLARRLLFDRSANDEHEKCILTKLKQQCGGQFTSKMEGMVVDLTLARDNQLKFQEYLSENSDVHPGIDLTVTVLTTGFWPSYKSFDLNLPSEMVKCVEVFKGFYETKTKHRKLTWIYSLGTCNIIGKFEPKTIELIVSTYQAAALLLFNTADKLSYSEIMTQLNLTNEDLVRLLHSLSCAKYKILAKEPNTRTISPNDSFEFNSKFTDKMRRIKIPLPPVDERKKVIEDVDKDRRYAIDAAIVRIMKSRKVLGHQQLVLECVEQLGRMFKPDIKAIKKRIEDLITRDYLERDKENPNTFRYLA*