Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1437420 | XP_013467967.1 | 85.308 | 211 | 4 | 1 | 1 | 184 | 364 | 574 | 5.09e-122 | 366 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1437420 | sp|O81767|PP348_ARATH | 49.289 | 211 | 79 | 2 | 1 | 184 | 614 | 823 | 2.05e-65 | 217 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1437420 | A0A072VJ01 | 85.308 | 211 | 4 | 1 | 1 | 184 | 364 | 574 | 2.43e-122 | 366 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0072050 | Msa1437420 | 0.804351 | 2.252240e-49 | -8.615850e-47 |
Msa1044290 | Msa1437420 | 0.805830 | 1.104551e-49 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1437420 | MtrunA17_Chr1g0178401 | 85.308 | 211 | 4 | 1 | 1 | 184 | 364 | 574 | 4.68e-126 | 366 |
Msa1437420 | MtrunA17_Chr2g0321231 | 51.232 | 203 | 71 | 2 | 9 | 184 | 664 | 865 | 1.45e-63 | 209 |
Msa1437420 | MtrunA17_Chr8g0392791 | 49.505 | 202 | 74 | 2 | 10 | 184 | 566 | 766 | 7.38e-62 | 204 |
Msa1437420 | MtrunA17_Chr4g0013841 | 46.445 | 211 | 85 | 2 | 1 | 184 | 630 | 839 | 2.37e-61 | 203 |
Msa1437420 | MtrunA17_Chr7g0255871 | 44.550 | 211 | 89 | 2 | 1 | 184 | 440 | 649 | 4.23e-61 | 200 |
Msa1437420 | MtrunA17_Chr5g0396201 | 46.445 | 211 | 85 | 2 | 1 | 184 | 460 | 669 | 5.18e-61 | 200 |
Msa1437420 | MtrunA17_Chr8g0364661 | 46.445 | 211 | 84 | 2 | 1 | 184 | 481 | 689 | 2.64e-60 | 199 |
Msa1437420 | MtrunA17_Chr4g0052381 | 45.972 | 211 | 86 | 2 | 1 | 184 | 474 | 683 | 1.62e-59 | 196 |
Msa1437420 | MtrunA17_Chr8g0392771 | 46.919 | 211 | 84 | 3 | 1 | 184 | 525 | 734 | 1.66e-59 | 197 |
Msa1437420 | MtrunA17_Chr4g0052361 | 45.498 | 211 | 87 | 2 | 1 | 184 | 457 | 666 | 5.87e-59 | 194 |
Msa1437420 | MtrunA17_Chr5g0412001 | 46.535 | 202 | 81 | 1 | 10 | 184 | 475 | 676 | 2.87e-58 | 193 |
Msa1437420 | MtrunA17_Chr1g0209951 | 47.115 | 208 | 82 | 2 | 4 | 184 | 654 | 860 | 3.19e-58 | 195 |
Msa1437420 | MtrunA17_Chr1g0210371 | 44.550 | 211 | 89 | 2 | 1 | 184 | 421 | 630 | 3.35e-58 | 192 |
Msa1437420 | MtrunA17_Chr4g0055661 | 45.813 | 203 | 82 | 2 | 9 | 184 | 433 | 634 | 5.40e-58 | 191 |
Msa1437420 | MtrunA17_Chr7g0246581 | 46.919 | 211 | 84 | 3 | 1 | 184 | 599 | 808 | 9.41e-58 | 193 |
Msa1437420 | MtrunA17_Chr7g0245241 | 45.972 | 211 | 86 | 3 | 1 | 184 | 498 | 707 | 2.02e-57 | 191 |
Msa1437420 | MtrunA17_Chr1g0186131 | 44.076 | 211 | 90 | 2 | 1 | 184 | 586 | 795 | 5.08e-57 | 191 |
Msa1437420 | MtrunA17_Chr2g0326691 | 46.445 | 211 | 85 | 2 | 1 | 184 | 469 | 678 | 1.03e-56 | 189 |
Msa1437420 | MtrunA17_Chr1g0185091 | 45.283 | 212 | 87 | 3 | 1 | 184 | 733 | 943 | 1.59e-56 | 191 |
Msa1437420 | MtrunA17_Chr1g0166001 | 43.128 | 211 | 92 | 2 | 1 | 184 | 644 | 853 | 2.20e-56 | 190 |
Msa1437420 | MtrunA17_Chr3g0136451 | 44.550 | 211 | 89 | 2 | 1 | 184 | 764 | 973 | 2.52e-56 | 190 |
Msa1437420 | MtrunA17_Chr1g0205461 | 44.550 | 211 | 89 | 2 | 1 | 184 | 573 | 782 | 5.36e-56 | 188 |
Msa1437420 | MtrunA17_Chr4g0063341 | 45.498 | 211 | 87 | 2 | 1 | 184 | 529 | 738 | 9.75e-56 | 187 |
Msa1437420 | MtrunA17_Chr7g0246841 | 44.076 | 211 | 90 | 2 | 1 | 184 | 564 | 773 | 9.79e-56 | 187 |
Msa1437420 | MtrunA17_Chr2g0285601 | 42.654 | 211 | 93 | 2 | 1 | 184 | 404 | 613 | 1.10e-55 | 185 |
Msa1437420 | MtrunA17_Chr7g0257861 | 44.550 | 211 | 89 | 2 | 1 | 184 | 387 | 596 | 1.60e-55 | 184 |
Msa1437420 | MtrunA17_Chr4g0051471 | 43.602 | 211 | 91 | 2 | 1 | 184 | 423 | 632 | 3.11e-55 | 184 |
Msa1437420 | MtrunA17_Chr1g0149231 | 43.602 | 211 | 91 | 2 | 1 | 184 | 403 | 612 | 7.30e-55 | 183 |
Msa1437420 | MtrunA17_Chr4g0003141 | 45.498 | 211 | 87 | 2 | 1 | 184 | 535 | 744 | 8.17e-55 | 184 |
Msa1437420 | MtrunA17_Chr8g0380361 | 42.654 | 211 | 93 | 2 | 1 | 184 | 491 | 700 | 2.03e-54 | 183 |
Msa1437420 | MtrunA17_Chr3g0081081 | 43.128 | 211 | 91 | 3 | 1 | 184 | 584 | 792 | 2.16e-54 | 184 |
Msa1437420 | MtrunA17_Chr8g0391951 | 43.062 | 209 | 91 | 2 | 3 | 184 | 494 | 701 | 3.58e-54 | 182 |
Msa1437420 | MtrunA17_Chr7g0249241 | 42.365 | 203 | 89 | 2 | 9 | 184 | 554 | 755 | 5.84e-54 | 182 |
Msa1437420 | MtrunA17_Chr6g0476471 | 45.540 | 213 | 86 | 4 | 1 | 184 | 72 | 283 | 1.23e-53 | 172 |
Msa1437420 | MtrunA17_Chr5g0410091 | 43.128 | 211 | 92 | 2 | 1 | 184 | 237 | 446 | 1.89e-53 | 176 |
Msa1437420 | MtrunA17_Chr2g0296821 | 45.050 | 202 | 83 | 2 | 10 | 184 | 691 | 891 | 1.90e-53 | 182 |
Msa1437420 | MtrunA17_Chr6g0476351 | 44.601 | 213 | 88 | 3 | 1 | 184 | 407 | 618 | 2.14e-53 | 179 |
Msa1437420 | MtrunA17_Chr2g0331571 | 43.128 | 211 | 92 | 2 | 1 | 184 | 411 | 620 | 2.36e-53 | 179 |
Msa1437420 | MtrunA17_Chr7g0217631 | 42.584 | 209 | 92 | 2 | 3 | 184 | 493 | 700 | 2.42e-53 | 180 |
Msa1437420 | MtrunA17_Chr3g0099291 | 43.602 | 211 | 91 | 2 | 1 | 184 | 576 | 785 | 2.43e-53 | 181 |
Msa1437420 | MtrunA17_Chr7g0220281 | 42.654 | 211 | 93 | 2 | 1 | 184 | 407 | 616 | 5.02e-53 | 178 |
Msa1437420 | MtrunA17_Chr6g0480651 | 43.602 | 211 | 91 | 2 | 1 | 184 | 537 | 746 | 6.30e-53 | 179 |
Msa1437420 | MtrunA17_Chr1g0146681 | 45.024 | 211 | 88 | 3 | 1 | 184 | 459 | 668 | 7.07e-53 | 178 |
Msa1437420 | MtrunA17_Chr7g0252001 | 42.925 | 212 | 91 | 3 | 1 | 184 | 463 | 672 | 7.39e-53 | 178 |
Msa1437420 | MtrunA17_Chr4g0073691 | 45.024 | 211 | 88 | 2 | 1 | 184 | 574 | 783 | 8.26e-53 | 179 |
Msa1437420 | MtrunA17_Chr5g0440921 | 44.076 | 211 | 90 | 3 | 1 | 184 | 475 | 684 | 1.12e-52 | 178 |
Msa1437420 | MtrunA17_Chr1g0205351 | 44.076 | 211 | 90 | 3 | 1 | 184 | 475 | 684 | 1.95e-52 | 177 |
Msa1437420 | MtrunA17_Chr4g0020001 | 41.748 | 206 | 92 | 2 | 6 | 184 | 368 | 572 | 3.10e-52 | 175 |
Msa1437420 | MtrunA17_Chr3g0087821 | 42.654 | 211 | 93 | 2 | 1 | 184 | 414 | 623 | 5.65e-52 | 175 |
Msa1437420 | MtrunA17_Chr3g0121921 | 41.509 | 212 | 94 | 4 | 1 | 184 | 407 | 616 | 1.81e-51 | 174 |
Msa1437420 | MtrunA17_Chr7g0252091 | 41.038 | 212 | 96 | 3 | 1 | 184 | 648 | 858 | 2.56e-51 | 176 |
Msa1437420 | MtrunA17_Chr1g0174141 | 42.180 | 211 | 94 | 2 | 1 | 184 | 278 | 487 | 5.15e-51 | 170 |
Msa1437420 | MtrunA17_Chr4g0053681 | 42.654 | 211 | 93 | 2 | 1 | 184 | 417 | 626 | 7.59e-51 | 172 |
Msa1437420 | MtrunA17_Chr4g0044381 | 43.062 | 209 | 91 | 2 | 3 | 184 | 607 | 814 | 7.70e-51 | 174 |
Msa1437420 | MtrunA17_Chr5g0446451 | 43.350 | 203 | 87 | 2 | 9 | 184 | 608 | 809 | 8.71e-51 | 174 |
Msa1437420 | MtrunA17_Chr5g0394591 | 44.335 | 203 | 85 | 2 | 9 | 184 | 529 | 730 | 1.14e-50 | 173 |
Msa1437420 | MtrunA17_Chr7g0222961 | 41.706 | 211 | 95 | 2 | 1 | 184 | 510 | 719 | 1.29e-50 | 173 |
Msa1437420 | MtrunA17_Chr2g0300971 | 44.076 | 211 | 90 | 3 | 1 | 184 | 531 | 740 | 1.36e-50 | 173 |
Msa1437420 | MtrunA17_Chr8g0365961 | 42.654 | 211 | 93 | 2 | 1 | 184 | 539 | 748 | 5.45e-50 | 171 |
Msa1437420 | MtrunA17_Chr4g0060651 | 43.627 | 204 | 86 | 3 | 9 | 184 | 448 | 650 | 5.50e-50 | 170 |
Msa1437420 | MtrunA17_Chr3g0094791 | 44.175 | 206 | 83 | 3 | 10 | 184 | 520 | 724 | 1.16e-49 | 170 |
Msa1437420 | MtrunA17_Chr3g0081091 | 42.180 | 211 | 93 | 3 | 1 | 184 | 602 | 810 | 1.34e-49 | 171 |
Msa1437420 | MtrunA17_Chr6g0458311 | 42.654 | 211 | 87 | 5 | 4 | 184 | 540 | 746 | 1.63e-49 | 170 |
Msa1437420 | MtrunA17_Chr4g0047321 | 41.627 | 209 | 94 | 2 | 3 | 184 | 384 | 591 | 7.58e-49 | 166 |
Msa1437420 | MtrunA17_Chr5g0417311 | 42.157 | 204 | 89 | 3 | 9 | 184 | 399 | 601 | 7.83e-49 | 166 |
Msa1437420 | MtrunA17_Chr8g0393341 | 39.216 | 204 | 96 | 2 | 8 | 184 | 583 | 785 | 1.03e-48 | 168 |
Msa1437420 | MtrunA17_Chr7g0228601 | 39.810 | 211 | 99 | 2 | 1 | 184 | 743 | 952 | 1.87e-48 | 168 |
Msa1437420 | MtrunA17_Chr8g0368101 | 42.180 | 211 | 94 | 2 | 1 | 184 | 548 | 757 | 2.12e-48 | 167 |
Msa1437420 | MtrunA17_Chr1g0165911 | 40.758 | 211 | 90 | 3 | 1 | 184 | 429 | 631 | 3.06e-48 | 165 |
Msa1437420 | MtrunA17_Chr2g0307871 | 44.175 | 206 | 87 | 3 | 6 | 184 | 771 | 975 | 4.92e-48 | 167 |
Msa1437420 | MtrunA17_Chr1g0166031 | 39.604 | 202 | 103 | 2 | 1 | 184 | 157 | 357 | 7.16e-48 | 159 |
Msa1437420 | MtrunA17_Chr6g0461581 | 40.758 | 211 | 97 | 2 | 1 | 184 | 851 | 1060 | 1.45e-47 | 166 |
Msa1437420 | MtrunA17_Chr6g0453621 | 39.545 | 220 | 96 | 4 | 1 | 184 | 419 | 637 | 1.50e-47 | 164 |
Msa1437420 | MtrunA17_Chr2g0295771 | 40.952 | 210 | 95 | 3 | 1 | 184 | 297 | 503 | 2.68e-47 | 161 |
Msa1437420 | MtrunA17_Chr3g0131331 | 38.863 | 211 | 101 | 2 | 1 | 184 | 345 | 554 | 2.96e-47 | 162 |
Msa1437420 | MtrunA17_Chr5g0394691 | 40.284 | 211 | 98 | 2 | 1 | 184 | 629 | 838 | 5.34e-47 | 164 |
Msa1437420 | MtrunA17_Chr5g0396021 | 36.449 | 214 | 106 | 2 | 1 | 184 | 559 | 772 | 1.93e-46 | 162 |
Msa1437420 | MtrunA17_Chr5g0418021 | 39.604 | 202 | 103 | 2 | 1 | 184 | 402 | 602 | 6.48e-46 | 159 |
Msa1437420 | MtrunA17_Chr8g0347201 | 36.019 | 211 | 107 | 2 | 1 | 184 | 728 | 937 | 1.22e-45 | 160 |
Msa1437420 | MtrunA17_Chr4g0060771 | 38.863 | 211 | 101 | 2 | 1 | 184 | 424 | 633 | 1.91e-45 | 158 |
Msa1437420 | MtrunA17_Chr4g0062971 | 41.589 | 214 | 92 | 5 | 1 | 184 | 814 | 1024 | 1.98e-45 | 159 |
Msa1437420 | MtrunA17_Chr3g0081591 | 40.887 | 203 | 91 | 4 | 9 | 184 | 496 | 696 | 2.49e-45 | 158 |
Msa1437420 | MtrunA17_Chr8g0378921 | 38.679 | 212 | 101 | 3 | 1 | 184 | 406 | 616 | 8.12e-45 | 156 |
Msa1437420 | MtrunA17_Chr7g0265441 | 39.336 | 211 | 100 | 2 | 1 | 184 | 666 | 875 | 1.06e-44 | 157 |
Msa1437420 | MtrunA17_Chr8g0381801 | 39.512 | 205 | 96 | 2 | 6 | 183 | 497 | 700 | 2.83e-44 | 155 |
Msa1437420 | MtrunA17_Chr8g0375731 | 40.845 | 213 | 96 | 4 | 1 | 184 | 415 | 626 | 8.99e-44 | 153 |
Msa1437420 | MtrunA17_Chr8g0379211 | 38.208 | 212 | 101 | 4 | 1 | 184 | 660 | 869 | 1.46e-43 | 154 |
Msa1437420 | MtrunA17_Chr1g0178471 | 41.706 | 211 | 91 | 4 | 1 | 184 | 428 | 633 | 2.58e-43 | 152 |
Msa1437420 | MtrunA17_Chr4g0045161 | 38.942 | 208 | 97 | 4 | 1 | 180 | 774 | 979 | 9.02e-43 | 152 |
Msa1437420 | MtrunA17_Chr5g0421551 | 43.931 | 173 | 70 | 1 | 10 | 155 | 475 | 647 | 1.66e-42 | 150 |
Msa1437420 | MtrunA17_Chr1g0165051 | 41.509 | 212 | 86 | 6 | 1 | 184 | 674 | 875 | 1.71e-42 | 151 |
Msa1437420 | MtrunA17_Chr6g0488111 | 40.526 | 190 | 103 | 3 | 1 | 184 | 261 | 446 | 7.54e-42 | 145 |
Msa1437420 | MtrunA17_Chr6g0476401 | 43.784 | 185 | 98 | 3 | 1 | 184 | 132 | 311 | 1.03e-41 | 142 |
Msa1437420 | MtrunA17_Chr5g0419031 | 39.252 | 214 | 99 | 5 | 1 | 184 | 353 | 565 | 1.20e-41 | 147 |
Msa1437420 | MtrunA17_Chr4g0044971 | 40.659 | 182 | 95 | 4 | 9 | 184 | 364 | 538 | 1.04e-40 | 144 |
Msa1437420 | MtrunA17_Chr3g0144951 | 38.785 | 214 | 99 | 3 | 1 | 184 | 360 | 571 | 3.21e-40 | 143 |
Msa1437420 | MtrunA17_Chr7g0268001 | 48.062 | 129 | 66 | 1 | 45 | 173 | 37 | 164 | 2.53e-39 | 134 |
Msa1437420 | MtrunA17_Chr4g0067001 | 39.524 | 210 | 97 | 6 | 4 | 184 | 394 | 602 | 3.34e-39 | 140 |
Msa1437420 | MtrunA17_Chr2g0287621 | 35.714 | 196 | 113 | 2 | 1 | 184 | 262 | 456 | 9.50e-39 | 137 |
Msa1437420 | MtrunA17_Chr6g0463051 | 51.754 | 114 | 54 | 1 | 71 | 184 | 16 | 128 | 4.72e-38 | 127 |
Msa1437420 | MtrunA17_Chr6g0488351 | 42.236 | 161 | 89 | 2 | 24 | 184 | 271 | 427 | 3.04e-36 | 130 |
Msa1437420 | MtrunA17_Chr5g0408261 | 55.102 | 98 | 43 | 1 | 87 | 184 | 2 | 98 | 9.96e-34 | 116 |
Msa1437420 | MtrunA17_Chr4g0003921 | 35.266 | 207 | 105 | 4 | 3 | 182 | 666 | 870 | 1.02e-32 | 123 |
Msa1437420 | MtrunA17_Chr2g0287551 | 38.788 | 165 | 89 | 4 | 25 | 184 | 298 | 455 | 4.70e-32 | 119 |
Msa1437420 | MtrunA17_Chr1g0165931 | 40.397 | 151 | 63 | 1 | 1 | 124 | 420 | 570 | 4.29e-31 | 118 |
Msa1437420 | MtrunA17_Chr5g0430251 | 36.275 | 204 | 105 | 4 | 1 | 184 | 689 | 887 | 4.20e-30 | 115 |
Msa1437420 | MtrunA17_Chr5g0428021 | 33.971 | 209 | 109 | 4 | 1 | 182 | 559 | 765 | 1.08e-29 | 114 |
Msa1437420 | MtrunA17_Chr1g0202451 | 31.884 | 207 | 99 | 5 | 1 | 180 | 684 | 875 | 1.11e-29 | 114 |
Msa1437420 | MtrunA17_Chr5g0447541 | 54.839 | 93 | 40 | 2 | 93 | 184 | 1 | 92 | 2.10e-29 | 104 |
Msa1437420 | MtrunA17_Chr6g0488311 | 50.000 | 98 | 48 | 1 | 86 | 183 | 324 | 420 | 5.44e-28 | 108 |
Msa1437420 | MtrunA17_Chr8g0392801 | 38.298 | 141 | 65 | 4 | 45 | 184 | 10 | 129 | 1.20e-23 | 90.5 |
Msa1437420 | MtrunA17_Chr5g0412041 | 37.059 | 170 | 77 | 5 | 10 | 179 | 414 | 553 | 1.62e-22 | 94.0 |
Msa1437420 | MtrunA17_Chr7g0220551 | 36.429 | 140 | 60 | 2 | 1 | 113 | 737 | 874 | 8.54e-22 | 92.0 |
Msa1437420 | MtrunA17_Chr8g0364841 | 42.991 | 107 | 34 | 1 | 1 | 80 | 571 | 677 | 1.06e-18 | 82.8 |
Msa1437420 | MtrunA17_Chr8g0391681 | 36.364 | 121 | 50 | 1 | 1 | 94 | 744 | 864 | 1.35e-18 | 82.8 |
Msa1437420 | MtrunA17_Chr4g0052501 | 30.233 | 129 | 61 | 1 | 1 | 100 | 642 | 770 | 8.08e-17 | 77.4 |
Msa1437420 | MtrunA17_Chr7g0259141 | 35.246 | 122 | 52 | 1 | 1 | 95 | 541 | 662 | 1.12e-16 | 77.0 |
Msa1437420 | MtrunA17_Chr7g0272891 | 31.200 | 125 | 59 | 2 | 9 | 106 | 532 | 656 | 2.31e-16 | 76.3 |
Msa1437420 | MtrunA17_Chr6g0476781 | 35.135 | 111 | 45 | 1 | 1 | 84 | 408 | 518 | 2.69e-16 | 75.9 |
Msa1437420 | MtrunA17_Chr3g0130351 | 35.398 | 113 | 46 | 1 | 9 | 94 | 454 | 566 | 3.39e-16 | 75.5 |
Msa1437420 | MtrunA17_Chr3g0106791 | 31.776 | 107 | 46 | 1 | 1 | 80 | 37 | 143 | 2.36e-15 | 70.1 |
Msa1437420 | MtrunA17_Chr4g0051901 | 33.884 | 121 | 53 | 1 | 1 | 94 | 506 | 626 | 3.01e-15 | 72.8 |
Msa1437420 | MtrunA17_Chr8g0346451 | 35.345 | 116 | 48 | 1 | 1 | 89 | 376 | 491 | 4.00e-15 | 72.4 |
Msa1437420 | MtrunA17_Chr8g0366221 | 31.967 | 122 | 56 | 2 | 1 | 95 | 468 | 589 | 1.70e-14 | 70.9 |
Msa1437420 | MtrunA17_Chr8g0380101 | 30.952 | 126 | 60 | 2 | 1 | 99 | 406 | 531 | 7.34e-14 | 68.9 |
Msa1437420 | MtrunA17_Chr4g0006361 | 29.032 | 124 | 61 | 1 | 1 | 97 | 545 | 668 | 8.22e-14 | 68.9 |
Msa1437420 | MtrunA17_Chr2g0303911 | 32.075 | 106 | 44 | 2 | 3 | 80 | 586 | 691 | 1.91e-13 | 67.8 |
Msa1437420 | MtrunA17_Chr3g0141251 | 31.746 | 126 | 59 | 2 | 1 | 99 | 428 | 553 | 2.86e-13 | 67.0 |
Msa1437420 | MtrunA17_Chr7g0263761 | 33.613 | 119 | 52 | 2 | 3 | 94 | 636 | 754 | 6.20e-13 | 66.2 |
Msa1437420 | MtrunA17_Chr1g0186051 | 32.692 | 104 | 43 | 1 | 9 | 85 | 511 | 614 | 7.14e-13 | 65.9 |
Msa1437420 | MtrunA17_Chr1g0146671 | 31.897 | 116 | 52 | 1 | 1 | 89 | 704 | 819 | 7.32e-13 | 66.2 |
Msa1437420 | MtrunA17_Chr8g0386861 | 29.457 | 129 | 64 | 2 | 1 | 102 | 716 | 844 | 2.06e-12 | 64.7 |
Msa1437420 | MtrunA17_Chr5g0396241 | 28.947 | 152 | 73 | 3 | 1 | 117 | 594 | 745 | 3.32e-12 | 64.3 |
Msa1437420 | MtrunA17_Chr2g0321311 | 42.424 | 66 | 36 | 2 | 119 | 184 | 1 | 64 | 4.94e-12 | 58.5 |
Msa1437420 | MtrunA17_Chr8g0349171 | 27.419 | 124 | 63 | 1 | 1 | 97 | 530 | 653 | 5.88e-12 | 63.5 |
Msa1437420 | MtrunA17_Chr1g0192971 | 31.343 | 134 | 65 | 2 | 1 | 107 | 440 | 573 | 7.88e-12 | 63.2 |
Msa1437420 | MtrunA17_Chr8g0371191 | 30.702 | 114 | 52 | 1 | 1 | 87 | 385 | 498 | 8.08e-12 | 62.8 |
Msa1437420 | MtrunA17_Chr6g0477191 | 44.118 | 68 | 37 | 1 | 116 | 183 | 129 | 195 | 1.82e-11 | 60.1 |
Msa1437420 | MtrunA17_Chr2g0312511 | 50.000 | 48 | 24 | 0 | 137 | 184 | 2 | 49 | 4.85e-11 | 55.5 |
Msa1437420 | MtrunA17_Chr4g0004081 | 27.200 | 125 | 64 | 1 | 1 | 98 | 566 | 690 | 5.92e-11 | 60.5 |
Msa1437420 | MtrunA17_Chr3g0139361 | 28.972 | 107 | 49 | 1 | 1 | 80 | 435 | 541 | 6.38e-11 | 60.5 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1437420 | AT4G33990.2 | 49.289 | 211 | 79 | 2 | 1 | 184 | 607 | 816 | 1.70e-66 | 218 |
Msa1437420 | AT4G33990.1 | 49.289 | 211 | 79 | 2 | 1 | 184 | 614 | 823 | 2.08e-66 | 217 |
Msa1437420 | AT3G63370.1 | 48.585 | 212 | 80 | 3 | 1 | 184 | 750 | 960 | 7.80e-64 | 211 |
Msa1437420 | AT4G30700.1 | 49.289 | 211 | 79 | 2 | 1 | 184 | 583 | 792 | 2.53e-63 | 209 |
Msa1437420 | AT4G37380.1 | 44.550 | 211 | 89 | 2 | 1 | 184 | 423 | 632 | 2.60e-60 | 198 |
Msa1437420 | AT2G27610.1 | 47.059 | 204 | 79 | 3 | 9 | 184 | 666 | 868 | 4.63e-60 | 201 |
Msa1437420 | AT4G02750.1 | 45.498 | 211 | 87 | 2 | 1 | 184 | 572 | 781 | 1.58e-59 | 198 |
Msa1437420 | AT3G49142.1 | 46.047 | 215 | 85 | 2 | 1 | 184 | 472 | 686 | 1.84e-59 | 197 |
Msa1437420 | AT4G33170.1 | 46.445 | 211 | 85 | 2 | 1 | 184 | 781 | 990 | 3.00e-59 | 199 |
Msa1437420 | AT2G03880.1 | 45.972 | 211 | 86 | 2 | 1 | 184 | 421 | 630 | 4.20e-59 | 195 |
Msa1437420 | AT2G22070.1 | 46.919 | 211 | 84 | 2 | 1 | 184 | 577 | 786 | 1.97e-58 | 195 |
Msa1437420 | AT3G23330.2 | 45.498 | 211 | 87 | 2 | 1 | 184 | 397 | 606 | 2.31e-58 | 192 |
Msa1437420 | AT1G20230.1 | 42.654 | 211 | 93 | 2 | 1 | 184 | 551 | 760 | 3.33e-58 | 194 |
Msa1437420 | AT3G23330.1 | 45.498 | 211 | 87 | 2 | 1 | 184 | 506 | 715 | 4.65e-58 | 193 |
Msa1437420 | AT3G46790.1 | 44.076 | 211 | 90 | 2 | 1 | 184 | 448 | 657 | 4.74e-57 | 190 |
Msa1437420 | AT2G01510.1 | 47.867 | 211 | 82 | 3 | 1 | 184 | 375 | 584 | 4.75e-56 | 186 |
Msa1437420 | AT2G01510.2 | 47.867 | 211 | 82 | 3 | 1 | 184 | 375 | 584 | 4.75e-56 | 186 |
Msa1437420 | AT1G08070.2 | 45.631 | 206 | 84 | 2 | 6 | 184 | 433 | 637 | 8.04e-56 | 186 |
Msa1437420 | AT3G02010.1 | 42.925 | 212 | 92 | 2 | 1 | 184 | 615 | 825 | 9.92e-56 | 188 |
Msa1437420 | AT1G08070.1 | 45.631 | 206 | 84 | 2 | 6 | 184 | 537 | 741 | 2.83e-55 | 186 |
Msa1437420 | AT5G04780.1 | 45.813 | 203 | 82 | 3 | 9 | 184 | 434 | 635 | 6.70e-55 | 184 |
Msa1437420 | AT4G16835.1 | 47.291 | 203 | 79 | 3 | 9 | 184 | 455 | 656 | 3.27e-54 | 182 |
Msa1437420 | AT5G48910.1 | 43.128 | 211 | 92 | 2 | 1 | 184 | 437 | 646 | 4.74e-54 | 182 |
Msa1437420 | AT1G56690.1 | 43.868 | 212 | 90 | 3 | 1 | 184 | 494 | 704 | 5.31e-54 | 182 |
Msa1437420 | AT5G65570.1 | 45.714 | 210 | 84 | 3 | 3 | 184 | 531 | 738 | 9.14e-54 | 182 |
Msa1437420 | AT3G08820.1 | 42.180 | 211 | 94 | 2 | 1 | 184 | 476 | 685 | 1.95e-53 | 181 |
Msa1437420 | AT5G16860.1 | 41.706 | 211 | 95 | 2 | 1 | 184 | 641 | 850 | 2.12e-53 | 182 |
Msa1437420 | AT1G25360.1 | 45.098 | 204 | 83 | 3 | 9 | 184 | 588 | 790 | 2.81e-53 | 181 |
Msa1437420 | AT1G09410.1 | 42.925 | 212 | 92 | 3 | 1 | 184 | 495 | 705 | 2.96e-53 | 180 |
Msa1437420 | AT3G49170.1 | 44.186 | 215 | 88 | 3 | 1 | 184 | 637 | 850 | 3.16e-53 | 181 |
Msa1437420 | AT4G21065.2 | 44.076 | 211 | 90 | 3 | 1 | 184 | 253 | 462 | 3.32e-53 | 176 |
Msa1437420 | AT1G31920.1 | 43.062 | 209 | 91 | 2 | 3 | 184 | 399 | 606 | 1.04e-52 | 177 |
Msa1437420 | AT4G21065.1 | 44.076 | 211 | 90 | 3 | 1 | 184 | 386 | 595 | 2.13e-52 | 176 |
Msa1437420 | AT5G52630.1 | 43.602 | 211 | 91 | 3 | 1 | 184 | 379 | 588 | 2.50e-52 | 176 |
Msa1437420 | AT1G11290.1 | 43.602 | 211 | 90 | 3 | 1 | 184 | 601 | 809 | 2.83e-52 | 179 |
Msa1437420 | AT1G68930.2 | 45.024 | 211 | 88 | 2 | 1 | 184 | 508 | 717 | 3.61e-52 | 177 |
Msa1437420 | AT3G22690.3 | 43.602 | 211 | 91 | 2 | 1 | 184 | 602 | 811 | 3.61e-52 | 178 |
Msa1437420 | AT3G24000.1 | 43.128 | 211 | 92 | 3 | 1 | 184 | 424 | 633 | 4.12e-52 | 176 |
Msa1437420 | AT3G26782.1 | 42.453 | 212 | 92 | 3 | 1 | 184 | 450 | 659 | 4.16e-52 | 176 |
Msa1437420 | AT3G22690.2 | 43.602 | 211 | 91 | 2 | 1 | 184 | 633 | 842 | 4.38e-52 | 178 |
Msa1437420 | AT1G68930.1 | 45.024 | 211 | 88 | 2 | 1 | 184 | 534 | 743 | 4.51e-52 | 177 |
Msa1437420 | AT4G13650.1 | 42.654 | 211 | 93 | 2 | 1 | 184 | 855 | 1064 | 4.74e-52 | 179 |
Msa1437420 | AT5G40410.1 | 44.601 | 213 | 87 | 4 | 1 | 184 | 398 | 608 | 1.02e-51 | 175 |
Msa1437420 | AT4G14850.1 | 42.654 | 211 | 93 | 2 | 1 | 184 | 475 | 684 | 2.15e-51 | 175 |
Msa1437420 | AT2G33760.1 | 44.335 | 203 | 84 | 2 | 9 | 184 | 383 | 583 | 2.68e-51 | 173 |
Msa1437420 | AT3G13770.2 | 41.791 | 201 | 89 | 2 | 11 | 184 | 396 | 595 | 4.61e-51 | 173 |
Msa1437420 | AT2G29760.1 | 44.340 | 212 | 89 | 4 | 1 | 184 | 528 | 738 | 7.00e-51 | 174 |
Msa1437420 | AT3G13770.1 | 41.791 | 201 | 89 | 2 | 11 | 184 | 429 | 628 | 7.64e-51 | 172 |
Msa1437420 | AT2G41080.1 | 41.232 | 211 | 96 | 2 | 1 | 184 | 441 | 650 | 8.45e-51 | 173 |
Msa1437420 | AT3G47530.1 | 41.981 | 212 | 94 | 3 | 1 | 184 | 381 | 591 | 1.03e-50 | 172 |
Msa1437420 | AT3G22690.1 | 43.333 | 210 | 91 | 2 | 1 | 183 | 633 | 841 | 2.09e-50 | 174 |
Msa1437420 | AT1G16480.1 | 39.810 | 211 | 99 | 3 | 1 | 184 | 728 | 937 | 4.26e-50 | 173 |
Msa1437420 | AT3G57430.1 | 41.584 | 202 | 90 | 2 | 10 | 184 | 690 | 890 | 2.22e-49 | 171 |
Msa1437420 | AT1G18485.1 | 42.654 | 211 | 93 | 3 | 1 | 184 | 761 | 970 | 2.31e-49 | 171 |
Msa1437420 | AT5G09950.2 | 42.927 | 205 | 88 | 4 | 9 | 184 | 785 | 989 | 2.33e-49 | 171 |
Msa1437420 | AT4G14820.1 | 42.593 | 216 | 92 | 3 | 1 | 184 | 507 | 722 | 2.35e-49 | 170 |
Msa1437420 | AT5G09950.3 | 42.927 | 205 | 88 | 4 | 9 | 184 | 791 | 995 | 2.37e-49 | 171 |
Msa1437420 | AT5G09950.1 | 42.927 | 205 | 88 | 4 | 9 | 184 | 791 | 995 | 2.37e-49 | 171 |
Msa1437420 | AT3G12770.1 | 39.810 | 211 | 99 | 2 | 1 | 184 | 485 | 694 | 3.80e-49 | 169 |
Msa1437420 | AT3G62890.1 | 40.758 | 211 | 97 | 2 | 1 | 184 | 364 | 573 | 4.21e-49 | 167 |
Msa1437420 | AT4G37170.1 | 40.758 | 211 | 97 | 3 | 1 | 184 | 482 | 691 | 9.33e-49 | 168 |
Msa1437420 | AT5G06540.1 | 40.566 | 212 | 97 | 3 | 1 | 184 | 412 | 622 | 1.49e-48 | 166 |
Msa1437420 | AT3G03580.1 | 42.453 | 212 | 93 | 4 | 1 | 184 | 672 | 882 | 1.64e-48 | 168 |
Msa1437420 | AT4G18750.1 | 40.758 | 211 | 97 | 2 | 1 | 184 | 662 | 871 | 1.78e-48 | 168 |
Msa1437420 | AT5G03800.1 | 38.863 | 211 | 102 | 1 | 1 | 184 | 686 | 896 | 2.83e-48 | 168 |
Msa1437420 | AT5G39680.1 | 40.191 | 209 | 97 | 2 | 3 | 184 | 503 | 710 | 6.26e-48 | 166 |
Msa1437420 | AT5G15340.1 | 39.437 | 213 | 99 | 3 | 1 | 184 | 412 | 623 | 9.26e-48 | 164 |
Msa1437420 | AT3G56550.2 | 39.713 | 209 | 97 | 3 | 4 | 184 | 374 | 581 | 1.44e-47 | 163 |
Msa1437420 | AT3G56550.1 | 39.713 | 209 | 97 | 3 | 4 | 184 | 374 | 581 | 1.44e-47 | 163 |
Msa1437420 | AT5G46460.1 | 43.128 | 211 | 90 | 5 | 1 | 184 | 490 | 697 | 1.83e-47 | 164 |
Msa1437420 | AT5G66520.1 | 40.094 | 212 | 98 | 3 | 1 | 184 | 410 | 620 | 3.88e-47 | 162 |
Msa1437420 | AT5G44230.2 | 39.623 | 212 | 99 | 3 | 1 | 184 | 350 | 560 | 1.43e-46 | 160 |
Msa1437420 | AT5G44230.1 | 39.623 | 212 | 99 | 3 | 1 | 184 | 447 | 657 | 2.86e-46 | 160 |
Msa1437420 | AT2G02980.1 | 40.686 | 204 | 92 | 3 | 9 | 184 | 401 | 603 | 3.67e-46 | 160 |
Msa1437420 | AT4G14050.2 | 39.720 | 214 | 97 | 6 | 1 | 184 | 348 | 559 | 1.69e-45 | 157 |
Msa1437420 | AT5G40405.2 | 38.389 | 211 | 102 | 2 | 1 | 184 | 403 | 612 | 2.45e-45 | 157 |
Msa1437420 | AT5G40405.1 | 38.389 | 211 | 102 | 2 | 1 | 184 | 403 | 612 | 2.45e-45 | 157 |
Msa1437420 | AT4G14050.1 | 39.720 | 214 | 97 | 6 | 1 | 184 | 401 | 612 | 2.66e-45 | 157 |
Msa1437420 | AT5G13230.1 | 39.423 | 208 | 99 | 2 | 4 | 184 | 615 | 822 | 1.15e-44 | 157 |
Msa1437420 | AT1G16480.2 | 37.981 | 208 | 101 | 3 | 1 | 181 | 711 | 917 | 2.42e-44 | 157 |
Msa1437420 | AT3G14330.1 | 38.605 | 215 | 97 | 4 | 1 | 184 | 500 | 710 | 3.44e-44 | 155 |
Msa1437420 | AT1G04840.1 | 38.863 | 211 | 101 | 3 | 1 | 184 | 456 | 665 | 5.54e-44 | 154 |
Msa1437420 | AT1G34160.2 | 37.089 | 213 | 105 | 2 | 1 | 184 | 322 | 534 | 5.91e-44 | 153 |
Msa1437420 | AT1G34160.1 | 37.089 | 213 | 105 | 2 | 1 | 184 | 369 | 581 | 8.72e-44 | 153 |
Msa1437420 | AT3G49710.1 | 42.439 | 205 | 87 | 4 | 10 | 184 | 518 | 721 | 1.01e-43 | 154 |
Msa1437420 | AT3G15130.1 | 38.318 | 214 | 102 | 3 | 1 | 184 | 476 | 689 | 9.22e-43 | 151 |
Msa1437420 | AT5G50990.1 | 39.810 | 211 | 96 | 3 | 1 | 184 | 328 | 534 | 3.76e-42 | 148 |
Msa1437420 | AT1G59720.1 | 39.367 | 221 | 96 | 6 | 1 | 184 | 419 | 638 | 4.74e-42 | 149 |
Msa1437420 | AT3G11460.1 | 38.679 | 212 | 94 | 5 | 1 | 184 | 420 | 623 | 1.24e-41 | 147 |
Msa1437420 | AT1G47580.1 | 56.481 | 108 | 46 | 1 | 77 | 184 | 133 | 239 | 3.18e-40 | 136 |
Msa1437420 | AT1G74630.1 | 41.667 | 204 | 90 | 3 | 9 | 184 | 441 | 643 | 8.79e-40 | 143 |
Msa1437420 | AT5G13270.1 | 38.679 | 212 | 93 | 4 | 1 | 184 | 550 | 752 | 1.05e-39 | 143 |
Msa1437420 | AT1G74630.2 | 41.176 | 204 | 91 | 3 | 9 | 184 | 456 | 658 | 1.12e-39 | 142 |
Msa1437420 | AT5G50390.1 | 35.749 | 207 | 101 | 4 | 9 | 184 | 496 | 701 | 5.07e-39 | 141 |
Msa1437420 | AT2G15690.1 | 38.378 | 185 | 109 | 3 | 1 | 184 | 399 | 579 | 1.27e-37 | 136 |
Msa1437420 | AT3G61170.1 | 39.779 | 181 | 81 | 2 | 1 | 154 | 558 | 737 | 2.83e-37 | 136 |
Msa1437420 | AT4G01030.1 | 32.547 | 212 | 113 | 3 | 1 | 184 | 559 | 768 | 3.05e-37 | 136 |
Msa1437420 | AT1G15510.1 | 38.095 | 210 | 100 | 4 | 1 | 182 | 659 | 866 | 4.58e-37 | 136 |
Msa1437420 | AT1G71420.1 | 36.866 | 217 | 104 | 4 | 1 | 184 | 529 | 745 | 3.12e-36 | 133 |
Msa1437420 | AT4G15720.1 | 35.616 | 219 | 103 | 4 | 1 | 184 | 401 | 616 | 4.06e-35 | 130 |
Msa1437420 | AT4G32450.1 | 34.694 | 196 | 114 | 3 | 2 | 184 | 343 | 537 | 9.98e-34 | 125 |
Msa1437420 | AT2G25580.2 | 33.663 | 202 | 113 | 4 | 1 | 184 | 417 | 615 | 2.97e-33 | 124 |
Msa1437420 | AT2G25580.1 | 33.663 | 202 | 113 | 4 | 1 | 184 | 417 | 615 | 2.97e-33 | 124 |
Msa1437420 | AT1G19720.1 | 35.377 | 212 | 105 | 4 | 1 | 184 | 687 | 894 | 2.30e-32 | 122 |
Msa1437420 | AT1G29710.1 | 31.156 | 199 | 117 | 3 | 1 | 184 | 282 | 475 | 1.36e-25 | 102 |
Msa1437420 | AT4G35130.1 | 29.808 | 208 | 111 | 4 | 8 | 184 | 601 | 804 | 1.43e-25 | 103 |
Msa1437420 | AT2G34370.1 | 33.171 | 205 | 110 | 6 | 1 | 184 | 271 | 469 | 9.33e-22 | 91.7 |
Msa1437420 | AT4G21300.1 | 34.711 | 121 | 52 | 1 | 1 | 94 | 706 | 826 | 1.21e-21 | 92.0 |
Msa1437420 | AT3G63370.2 | 39.130 | 115 | 43 | 1 | 1 | 88 | 750 | 864 | 1.16e-19 | 86.3 |
Msa1437420 | AT1G33350.2 | 34.821 | 112 | 46 | 2 | 1 | 85 | 426 | 537 | 2.78e-17 | 79.3 |
Msa1437420 | AT1G33350.1 | 34.821 | 112 | 46 | 2 | 1 | 85 | 426 | 537 | 2.78e-17 | 79.3 |
Msa1437420 | AT5G52850.1 | 26.794 | 209 | 110 | 5 | 1 | 180 | 691 | 885 | 1.08e-16 | 77.4 |
Msa1437420 | AT3G09040.2 | 35.088 | 114 | 47 | 1 | 2 | 88 | 922 | 1035 | 2.22e-16 | 76.6 |
Msa1437420 | AT3G09040.3 | 35.088 | 114 | 47 | 1 | 2 | 88 | 922 | 1035 | 2.22e-16 | 76.6 |
Msa1437420 | AT3G09040.1 | 35.088 | 114 | 47 | 1 | 2 | 88 | 897 | 1010 | 2.49e-16 | 76.6 |
Msa1437420 | AT3G09040.4 | 35.088 | 114 | 47 | 1 | 2 | 88 | 897 | 1010 | 2.49e-16 | 76.6 |
Msa1437420 | AT5G08510.1 | 34.188 | 117 | 49 | 3 | 1 | 89 | 379 | 495 | 8.97e-16 | 74.7 |
Msa1437420 | AT3G15930.1 | 33.071 | 127 | 58 | 2 | 1 | 100 | 531 | 657 | 2.77e-14 | 70.5 |
Msa1437420 | AT3G02330.1 | 33.333 | 135 | 58 | 4 | 1 | 106 | 766 | 897 | 4.38e-14 | 70.1 |
Msa1437420 | AT2G22410.1 | 33.913 | 115 | 49 | 1 | 1 | 88 | 552 | 666 | 4.72e-14 | 69.7 |
Msa1437420 | AT3G05340.1 | 29.921 | 127 | 62 | 2 | 1 | 100 | 520 | 646 | 1.10e-13 | 68.9 |
Msa1437420 | AT2G13600.1 | 32.174 | 115 | 51 | 2 | 1 | 88 | 555 | 669 | 1.74e-13 | 68.2 |
Msa1437420 | AT1G71490.1 | 31.538 | 130 | 58 | 3 | 10 | 111 | 554 | 680 | 2.14e-13 | 68.2 |
Msa1437420 | AT3G13880.1 | 33.663 | 101 | 40 | 1 | 10 | 83 | 631 | 731 | 9.11e-13 | 66.2 |
Msa1437420 | AT1G56570.1 | 29.545 | 132 | 65 | 3 | 1 | 104 | 477 | 608 | 1.17e-12 | 65.9 |
Msa1437420 | AT1G56570.2 | 29.545 | 132 | 65 | 3 | 1 | 104 | 477 | 608 | 1.17e-12 | 65.9 |
Msa1437420 | AT3G29230.1 | 30.357 | 112 | 51 | 1 | 1 | 85 | 478 | 589 | 1.44e-12 | 65.5 |
Msa1437420 | AT4G19191.1 | 27.338 | 139 | 68 | 2 | 1 | 112 | 521 | 653 | 5.28e-12 | 63.9 |
Msa1437420 | AT4G16470.1 | 32.456 | 114 | 50 | 2 | 9 | 95 | 380 | 493 | 1.38e-11 | 62.8 |
Msa1437420 | AT4G32430.1 | 30.000 | 120 | 52 | 3 | 7 | 94 | 643 | 762 | 5.10e-11 | 61.2 |
Msa1437420 | AT4G32430.2 | 30.000 | 120 | 52 | 3 | 7 | 94 | 511 | 630 | 7.83e-11 | 60.5 |
Find 32 sgRNAs with CRISPR-Local
Find 56 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ATTTGCGTCCCGAACAATTA+TGG | 0.207915 | tig0028303:-27965 | None:intergenic |
AGCAAACCCCTTCATTAAAA+TGG | 0.260195 | tig0028303:-27996 | None:intergenic |
TTTGCTCATGTGGGGACTAT+TGG | 0.262945 | tig0028303:+28013 | Msa1437420:CDS |
CAAACAAGGGTGATCCTATT+AGG | 0.302350 | tig0028303:+27869 | Msa1437420:CDS |
GAAAAGCTTGCTATTGCATT+TGG | 0.329277 | tig0028303:+27832 | Msa1437420:CDS |
CTAATAGGATCACCCTTGTT+TGG | 0.335040 | tig0028303:-27868 | None:intergenic |
CTTGGAGCATGTAGAGTTCA+TGG | 0.368603 | tig0028303:+27443 | Msa1437420:CDS |
GAAAAGGTCCATAATTGTTC+GGG | 0.373385 | tig0028303:+27957 | Msa1437420:CDS |
TAATAGGATCACCCTTGTTT+GGG | 0.377321 | tig0028303:-27867 | None:intergenic |
TGCAACACAAATTCTGTATC+AGG | 0.380704 | tig0028303:-27763 | None:intergenic |
TGAAAAGGTCCATAATTGTT+CGG | 0.391681 | tig0028303:+27956 | Msa1437420:CDS |
CGTAATTAAGAAGTTGAAGA+TGG | 0.464753 | tig0028303:+27729 | Msa1437420:CDS |
AGGCTGTGGAGTGCTTTGCT+TGG | 0.467174 | tig0028303:+27425 | Msa1437420:CDS |
ATTAAGAAGTTGAAGATGGT+TGG | 0.467880 | tig0028303:+27733 | Msa1437420:CDS |
AGTTCATGGGAACATGGAAT+TGG | 0.470199 | tig0028303:+27457 | Msa1437420:CDS |
TCATAGATCTCCTTCGATTG+AGG | 0.471859 | tig0028303:-27694 | None:intergenic |
CTTAATTGCCATCCCAAACA+AGG | 0.489748 | tig0028303:+27855 | Msa1437420:CDS |
AATGAAGGGGTTTGCTCATG+TGG | 0.490554 | tig0028303:+28003 | Msa1437420:CDS |
AAAACATATCAGTTTAGTGT+TGG | 0.508132 | tig0028303:+27658 | Msa1437420:CDS |
ACTTCGATCCATGTCCATCC+AGG | 0.533211 | tig0028303:-27628 | None:intergenic |
TGGTATCAGAAGTTATGAAA+AGG | 0.537473 | tig0028303:+27941 | Msa1437420:CDS |
ATGAAGGGGTTTGCTCATGT+GGG | 0.537734 | tig0028303:+28004 | Msa1437420:CDS |
GAACATGGAATTGGCAGAAA+AGG | 0.541114 | tig0028303:+27466 | Msa1437420:CDS |
AGGATCACCCTTGTTTGGGA+TGG | 0.560773 | tig0028303:-27863 | None:intergenic |
TTGGAGCATGTAGAGTTCAT+GGG | 0.575651 | tig0028303:+27444 | Msa1437420:CDS |
CTGTAGTTCAAGTAGAGACT+CGG | 0.575741 | tig0028303:-27492 | None:intergenic |
ATTTGTGTTGCAAGATGTTG+AGG | 0.590269 | tig0028303:+27774 | Msa1437420:CDS |
TAGATCTCATCCTCAATCGA+AGG | 0.606510 | tig0028303:+27684 | Msa1437420:CDS |
TGAAGGGGTTTGCTCATGTG+GGG | 0.620931 | tig0028303:+28005 | Msa1437420:CDS |
TGTGTTGCAAGATGTTGAGG+AGG | 0.641990 | tig0028303:+27777 | Msa1437420:CDS |
ATGTAGAGTTCATGGGAACA+TGG | 0.643695 | tig0028303:+27451 | Msa1437420:CDS |
TTAATTGCCATCCCAAACAA+GGG | 0.683011 | tig0028303:+27856 | Msa1437420:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
! | TCTAATATTTATGCAAAAGC+CGG | + | tig0028303:27545-27564 | Msa1437420:intron | 25.0% |
! | AAAACATATCAGTTTAGTGT+TGG | + | tig0028303:27658-27677 | Msa1437420:CDS | 25.0% |
!!! | AGATTTTTAGAGATCCTAAT+AGG | - | tig0028303:27886-27905 | None:intergenic | 25.0% |
CGTAATTAAGAAGTTGAAGA+TGG | + | tig0028303:27729-27748 | Msa1437420:CDS | 30.0% | |
ATTAAGAAGTTGAAGATGGT+TGG | + | tig0028303:27733-27752 | Msa1437420:CDS | 30.0% | |
TGGTATCAGAAGTTATGAAA+AGG | + | tig0028303:27941-27960 | Msa1437420:CDS | 30.0% | |
TGAAAAGGTCCATAATTGTT+CGG | + | tig0028303:27956-27975 | Msa1437420:CDS | 30.0% | |
!! | GCTTTCACCATTTTAATGAA+GGG | + | tig0028303:27989-28008 | Msa1437420:CDS | 30.0% |
!! | CTTTCACCATTTTAATGAAG+GGG | + | tig0028303:27990-28009 | Msa1437420:CDS | 30.0% |
TGAATGTTGAAAAAGACGAG+AGG | + | tig0028303:27405-27424 | Msa1437420:CDS | 35.0% | |
AACTACAGCCAAAAAATCCA+GGG | + | tig0028303:27507-27526 | Msa1437420:CDS | 35.0% | |
!!! | ACATAAACCCCTGGATTTTT+TGG | - | tig0028303:27518-27537 | None:intergenic | 35.0% |
GATAGTAATACATAAACCCC+TGG | - | tig0028303:27527-27546 | None:intergenic | 35.0% | |
TGCAACACAAATTCTGTATC+AGG | - | tig0028303:27766-27785 | None:intergenic | 35.0% | |
ATTTGTGTTGCAAGATGTTG+AGG | + | tig0028303:27774-27793 | Msa1437420:CDS | 35.0% | |
!! | GAAAAGCTTGCTATTGCATT+TGG | + | tig0028303:27832-27851 | Msa1437420:CDS | 35.0% |
TTAATTGCCATCCCAAACAA+GGG | + | tig0028303:27856-27875 | Msa1437420:CDS | 35.0% | |
! | TAATAGGATCACCCTTGTTT+GGG | - | tig0028303:27870-27889 | None:intergenic | 35.0% |
TCTAAAAATCTGAGAGTCTG+TGG | + | tig0028303:27895-27914 | Msa1437420:CDS | 35.0% | |
! | TTGTCACACGTTTTGTAAGA+TGG | + | tig0028303:27921-27940 | Msa1437420:CDS | 35.0% |
GAAAAGGTCCATAATTGTTC+GGG | + | tig0028303:27957-27976 | Msa1437420:CDS | 35.0% | |
!! | CGCTTTCACCATTTTAATGA+AGG | + | tig0028303:27988-28007 | Msa1437420:CDS | 35.0% |
AGCAAACCCCTTCATTAAAA+TGG | - | tig0028303:27999-28018 | None:intergenic | 35.0% | |
TTGGAGCATGTAGAGTTCAT+GGG | + | tig0028303:27444-27463 | Msa1437420:CDS | 40.0% | |
ATGTAGAGTTCATGGGAACA+TGG | + | tig0028303:27451-27470 | Msa1437420:CDS | 40.0% | |
AGTTCATGGGAACATGGAAT+TGG | + | tig0028303:27457-27476 | Msa1437420:CDS | 40.0% | |
GAACATGGAATTGGCAGAAA+AGG | + | tig0028303:27466-27485 | Msa1437420:CDS | 40.0% | |
CTGTAGTTCAAGTAGAGACT+CGG | - | tig0028303:27495-27514 | None:intergenic | 40.0% | |
GAACTACAGCCAAAAAATCC+AGG | + | tig0028303:27506-27525 | Msa1437420:CDS | 40.0% | |
ACTACAGCCAAAAAATCCAG+GGG | + | tig0028303:27508-27527 | Msa1437420:CDS | 40.0% | |
TTTATGCAAAAGCCGGTAAG+TGG | + | tig0028303:27552-27571 | Msa1437420:intron | 40.0% | |
TTATGCAAAAGCCGGTAAGT+GGG | + | tig0028303:27553-27572 | Msa1437420:intron | 40.0% | |
TGGGAAAAGTGGCAGAATTT+AGG | + | tig0028303:27572-27591 | Msa1437420:intron | 40.0% | |
GGGAAAAGTGGCAGAATTTA+GGG | + | tig0028303:27573-27592 | Msa1437420:intron | 40.0% | |
! | TTAGGGATTTGATGACACAG+AGG | + | tig0028303:27590-27609 | Msa1437420:intron | 40.0% |
AGGAAGCTGAAAAAAGTTCC+TGG | + | tig0028303:27610-27629 | Msa1437420:CDS | 40.0% | |
AGCTGAAAAAAGTTCCTGGA+TGG | + | tig0028303:27614-27633 | Msa1437420:CDS | 40.0% | |
AAAAAGTTCCTGGATGGACA+TGG | + | tig0028303:27620-27639 | Msa1437420:CDS | 40.0% | |
TAGATCTCATCCTCAATCGA+AGG | + | tig0028303:27684-27703 | Msa1437420:CDS | 40.0% | |
TCATAGATCTCCTTCGATTG+AGG | - | tig0028303:27697-27716 | None:intergenic | 40.0% | |
CTTAATTGCCATCCCAAACA+AGG | + | tig0028303:27855-27874 | Msa1437420:CDS | 40.0% | |
CTAATAGGATCACCCTTGTT+TGG | - | tig0028303:27871-27890 | None:intergenic | 40.0% | |
CAAACAAGGGTGATCCTATT+AGG | + | tig0028303:27869-27888 | Msa1437420:CDS | 40.0% | |
ATTTGCGTCCCGAACAATTA+TGG | - | tig0028303:27968-27987 | None:intergenic | 40.0% | |
TTGAAAAAGACGAGAGGCTG+TGG | + | tig0028303:27411-27430 | Msa1437420:CDS | 45.0% | |
CTTGGAGCATGTAGAGTTCA+TGG | + | tig0028303:27443-27462 | Msa1437420:CDS | 45.0% | |
TGTGTTGCAAGATGTTGAGG+AGG | + | tig0028303:27777-27796 | Msa1437420:CDS | 45.0% | |
! | AATGAAGGGGTTTGCTCATG+TGG | + | tig0028303:28003-28022 | Msa1437420:CDS | 45.0% |
! | ATGAAGGGGTTTGCTCATGT+GGG | + | tig0028303:28004-28023 | Msa1437420:CDS | 45.0% |
TTTGCTCATGTGGGGACTAT+TGG | + | tig0028303:28013-28032 | Msa1437420:CDS | 45.0% | |
AAGCCGGTAAGTGGGAAAAG+TGG | + | tig0028303:27561-27580 | Msa1437420:intron | 50.0% | |
!!! | CTGCCACTTTTCCCACTTAC+CGG | - | tig0028303:27567-27586 | None:intergenic | 50.0% |
ACTTCGATCCATGTCCATCC+AGG | - | tig0028303:27631-27650 | None:intergenic | 50.0% | |
! | AGGATCACCCTTGTTTGGGA+TGG | - | tig0028303:27866-27885 | None:intergenic | 50.0% |
! | TGAAGGGGTTTGCTCATGTG+GGG | + | tig0028303:28005-28024 | Msa1437420:CDS | 50.0% |
! | AGGCTGTGGAGTGCTTTGCT+TGG | + | tig0028303:27425-27444 | Msa1437420:CDS | 55.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
tig0028303 | gene | 27404 | 28038 | 27404 | ID=Msa1437420;Name=Msa1437420 |
tig0028303 | mRNA | 27404 | 28038 | 27404 | ID=Msa1437420-mRNA-1;Parent=Msa1437420;Name=Msa1437420-mRNA-1;_AED=0.34;_eAED=0.34;_QI=0|0|0|1|1|1|2|0|184 |
tig0028303 | exon | 27404 | 27529 | 27404 | ID=Msa1437420-mRNA-1:exon:10677;Parent=Msa1437420-mRNA-1 |
tig0028303 | exon | 27610 | 28038 | 27610 | ID=Msa1437420-mRNA-1:exon:10678;Parent=Msa1437420-mRNA-1 |
tig0028303 | CDS | 27404 | 27529 | 27404 | ID=Msa1437420-mRNA-1:cds;Parent=Msa1437420-mRNA-1 |
tig0028303 | CDS | 27610 | 28038 | 27610 | ID=Msa1437420-mRNA-1:cds;Parent=Msa1437420-mRNA-1 |
Gene Sequence |
Protein sequence |