AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1437420

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1437420 MtrunA17_Chr1g0178401 85.308 211 4 1 1 184 364 574 4.68e-126 366
Msa1437420 MtrunA17_Chr2g0321231 51.232 203 71 2 9 184 664 865 1.45e-63 209
Msa1437420 MtrunA17_Chr8g0392791 49.505 202 74 2 10 184 566 766 7.38e-62 204
Msa1437420 MtrunA17_Chr4g0013841 46.445 211 85 2 1 184 630 839 2.37e-61 203
Msa1437420 MtrunA17_Chr7g0255871 44.550 211 89 2 1 184 440 649 4.23e-61 200
Msa1437420 MtrunA17_Chr5g0396201 46.445 211 85 2 1 184 460 669 5.18e-61 200
Msa1437420 MtrunA17_Chr8g0364661 46.445 211 84 2 1 184 481 689 2.64e-60 199
Msa1437420 MtrunA17_Chr4g0052381 45.972 211 86 2 1 184 474 683 1.62e-59 196
Msa1437420 MtrunA17_Chr8g0392771 46.919 211 84 3 1 184 525 734 1.66e-59 197
Msa1437420 MtrunA17_Chr4g0052361 45.498 211 87 2 1 184 457 666 5.87e-59 194
Msa1437420 MtrunA17_Chr5g0412001 46.535 202 81 1 10 184 475 676 2.87e-58 193
Msa1437420 MtrunA17_Chr1g0209951 47.115 208 82 2 4 184 654 860 3.19e-58 195
Msa1437420 MtrunA17_Chr1g0210371 44.550 211 89 2 1 184 421 630 3.35e-58 192
Msa1437420 MtrunA17_Chr4g0055661 45.813 203 82 2 9 184 433 634 5.40e-58 191
Msa1437420 MtrunA17_Chr7g0246581 46.919 211 84 3 1 184 599 808 9.41e-58 193
Msa1437420 MtrunA17_Chr7g0245241 45.972 211 86 3 1 184 498 707 2.02e-57 191
Msa1437420 MtrunA17_Chr1g0186131 44.076 211 90 2 1 184 586 795 5.08e-57 191
Msa1437420 MtrunA17_Chr2g0326691 46.445 211 85 2 1 184 469 678 1.03e-56 189
Msa1437420 MtrunA17_Chr1g0185091 45.283 212 87 3 1 184 733 943 1.59e-56 191
Msa1437420 MtrunA17_Chr1g0166001 43.128 211 92 2 1 184 644 853 2.20e-56 190
Msa1437420 MtrunA17_Chr3g0136451 44.550 211 89 2 1 184 764 973 2.52e-56 190
Msa1437420 MtrunA17_Chr1g0205461 44.550 211 89 2 1 184 573 782 5.36e-56 188
Msa1437420 MtrunA17_Chr4g0063341 45.498 211 87 2 1 184 529 738 9.75e-56 187
Msa1437420 MtrunA17_Chr7g0246841 44.076 211 90 2 1 184 564 773 9.79e-56 187
Msa1437420 MtrunA17_Chr2g0285601 42.654 211 93 2 1 184 404 613 1.10e-55 185
Msa1437420 MtrunA17_Chr7g0257861 44.550 211 89 2 1 184 387 596 1.60e-55 184
Msa1437420 MtrunA17_Chr4g0051471 43.602 211 91 2 1 184 423 632 3.11e-55 184
Msa1437420 MtrunA17_Chr1g0149231 43.602 211 91 2 1 184 403 612 7.30e-55 183
Msa1437420 MtrunA17_Chr4g0003141 45.498 211 87 2 1 184 535 744 8.17e-55 184
Msa1437420 MtrunA17_Chr8g0380361 42.654 211 93 2 1 184 491 700 2.03e-54 183
Msa1437420 MtrunA17_Chr3g0081081 43.128 211 91 3 1 184 584 792 2.16e-54 184
Msa1437420 MtrunA17_Chr8g0391951 43.062 209 91 2 3 184 494 701 3.58e-54 182
Msa1437420 MtrunA17_Chr7g0249241 42.365 203 89 2 9 184 554 755 5.84e-54 182
Msa1437420 MtrunA17_Chr6g0476471 45.540 213 86 4 1 184 72 283 1.23e-53 172
Msa1437420 MtrunA17_Chr5g0410091 43.128 211 92 2 1 184 237 446 1.89e-53 176
Msa1437420 MtrunA17_Chr2g0296821 45.050 202 83 2 10 184 691 891 1.90e-53 182
Msa1437420 MtrunA17_Chr6g0476351 44.601 213 88 3 1 184 407 618 2.14e-53 179
Msa1437420 MtrunA17_Chr2g0331571 43.128 211 92 2 1 184 411 620 2.36e-53 179
Msa1437420 MtrunA17_Chr7g0217631 42.584 209 92 2 3 184 493 700 2.42e-53 180
Msa1437420 MtrunA17_Chr3g0099291 43.602 211 91 2 1 184 576 785 2.43e-53 181
Msa1437420 MtrunA17_Chr7g0220281 42.654 211 93 2 1 184 407 616 5.02e-53 178
Msa1437420 MtrunA17_Chr6g0480651 43.602 211 91 2 1 184 537 746 6.30e-53 179
Msa1437420 MtrunA17_Chr1g0146681 45.024 211 88 3 1 184 459 668 7.07e-53 178
Msa1437420 MtrunA17_Chr7g0252001 42.925 212 91 3 1 184 463 672 7.39e-53 178
Msa1437420 MtrunA17_Chr4g0073691 45.024 211 88 2 1 184 574 783 8.26e-53 179
Msa1437420 MtrunA17_Chr5g0440921 44.076 211 90 3 1 184 475 684 1.12e-52 178
Msa1437420 MtrunA17_Chr1g0205351 44.076 211 90 3 1 184 475 684 1.95e-52 177
Msa1437420 MtrunA17_Chr4g0020001 41.748 206 92 2 6 184 368 572 3.10e-52 175
Msa1437420 MtrunA17_Chr3g0087821 42.654 211 93 2 1 184 414 623 5.65e-52 175
Msa1437420 MtrunA17_Chr3g0121921 41.509 212 94 4 1 184 407 616 1.81e-51 174
Msa1437420 MtrunA17_Chr7g0252091 41.038 212 96 3 1 184 648 858 2.56e-51 176
Msa1437420 MtrunA17_Chr1g0174141 42.180 211 94 2 1 184 278 487 5.15e-51 170
Msa1437420 MtrunA17_Chr4g0053681 42.654 211 93 2 1 184 417 626 7.59e-51 172
Msa1437420 MtrunA17_Chr4g0044381 43.062 209 91 2 3 184 607 814 7.70e-51 174
Msa1437420 MtrunA17_Chr5g0446451 43.350 203 87 2 9 184 608 809 8.71e-51 174
Msa1437420 MtrunA17_Chr5g0394591 44.335 203 85 2 9 184 529 730 1.14e-50 173
Msa1437420 MtrunA17_Chr7g0222961 41.706 211 95 2 1 184 510 719 1.29e-50 173
Msa1437420 MtrunA17_Chr2g0300971 44.076 211 90 3 1 184 531 740 1.36e-50 173
Msa1437420 MtrunA17_Chr8g0365961 42.654 211 93 2 1 184 539 748 5.45e-50 171
Msa1437420 MtrunA17_Chr4g0060651 43.627 204 86 3 9 184 448 650 5.50e-50 170
Msa1437420 MtrunA17_Chr3g0094791 44.175 206 83 3 10 184 520 724 1.16e-49 170
Msa1437420 MtrunA17_Chr3g0081091 42.180 211 93 3 1 184 602 810 1.34e-49 171
Msa1437420 MtrunA17_Chr6g0458311 42.654 211 87 5 4 184 540 746 1.63e-49 170
Msa1437420 MtrunA17_Chr4g0047321 41.627 209 94 2 3 184 384 591 7.58e-49 166
Msa1437420 MtrunA17_Chr5g0417311 42.157 204 89 3 9 184 399 601 7.83e-49 166
Msa1437420 MtrunA17_Chr8g0393341 39.216 204 96 2 8 184 583 785 1.03e-48 168
Msa1437420 MtrunA17_Chr7g0228601 39.810 211 99 2 1 184 743 952 1.87e-48 168
Msa1437420 MtrunA17_Chr8g0368101 42.180 211 94 2 1 184 548 757 2.12e-48 167
Msa1437420 MtrunA17_Chr1g0165911 40.758 211 90 3 1 184 429 631 3.06e-48 165
Msa1437420 MtrunA17_Chr2g0307871 44.175 206 87 3 6 184 771 975 4.92e-48 167
Msa1437420 MtrunA17_Chr1g0166031 39.604 202 103 2 1 184 157 357 7.16e-48 159
Msa1437420 MtrunA17_Chr6g0461581 40.758 211 97 2 1 184 851 1060 1.45e-47 166
Msa1437420 MtrunA17_Chr6g0453621 39.545 220 96 4 1 184 419 637 1.50e-47 164
Msa1437420 MtrunA17_Chr2g0295771 40.952 210 95 3 1 184 297 503 2.68e-47 161
Msa1437420 MtrunA17_Chr3g0131331 38.863 211 101 2 1 184 345 554 2.96e-47 162
Msa1437420 MtrunA17_Chr5g0394691 40.284 211 98 2 1 184 629 838 5.34e-47 164
Msa1437420 MtrunA17_Chr5g0396021 36.449 214 106 2 1 184 559 772 1.93e-46 162
Msa1437420 MtrunA17_Chr5g0418021 39.604 202 103 2 1 184 402 602 6.48e-46 159
Msa1437420 MtrunA17_Chr8g0347201 36.019 211 107 2 1 184 728 937 1.22e-45 160
Msa1437420 MtrunA17_Chr4g0060771 38.863 211 101 2 1 184 424 633 1.91e-45 158
Msa1437420 MtrunA17_Chr4g0062971 41.589 214 92 5 1 184 814 1024 1.98e-45 159
Msa1437420 MtrunA17_Chr3g0081591 40.887 203 91 4 9 184 496 696 2.49e-45 158
Msa1437420 MtrunA17_Chr8g0378921 38.679 212 101 3 1 184 406 616 8.12e-45 156
Msa1437420 MtrunA17_Chr7g0265441 39.336 211 100 2 1 184 666 875 1.06e-44 157
Msa1437420 MtrunA17_Chr8g0381801 39.512 205 96 2 6 183 497 700 2.83e-44 155
Msa1437420 MtrunA17_Chr8g0375731 40.845 213 96 4 1 184 415 626 8.99e-44 153
Msa1437420 MtrunA17_Chr8g0379211 38.208 212 101 4 1 184 660 869 1.46e-43 154
Msa1437420 MtrunA17_Chr1g0178471 41.706 211 91 4 1 184 428 633 2.58e-43 152
Msa1437420 MtrunA17_Chr4g0045161 38.942 208 97 4 1 180 774 979 9.02e-43 152
Msa1437420 MtrunA17_Chr5g0421551 43.931 173 70 1 10 155 475 647 1.66e-42 150
Msa1437420 MtrunA17_Chr1g0165051 41.509 212 86 6 1 184 674 875 1.71e-42 151
Msa1437420 MtrunA17_Chr6g0488111 40.526 190 103 3 1 184 261 446 7.54e-42 145
Msa1437420 MtrunA17_Chr6g0476401 43.784 185 98 3 1 184 132 311 1.03e-41 142
Msa1437420 MtrunA17_Chr5g0419031 39.252 214 99 5 1 184 353 565 1.20e-41 147
Msa1437420 MtrunA17_Chr4g0044971 40.659 182 95 4 9 184 364 538 1.04e-40 144
Msa1437420 MtrunA17_Chr3g0144951 38.785 214 99 3 1 184 360 571 3.21e-40 143
Msa1437420 MtrunA17_Chr7g0268001 48.062 129 66 1 45 173 37 164 2.53e-39 134
Msa1437420 MtrunA17_Chr4g0067001 39.524 210 97 6 4 184 394 602 3.34e-39 140
Msa1437420 MtrunA17_Chr2g0287621 35.714 196 113 2 1 184 262 456 9.50e-39 137
Msa1437420 MtrunA17_Chr6g0463051 51.754 114 54 1 71 184 16 128 4.72e-38 127
Msa1437420 MtrunA17_Chr6g0488351 42.236 161 89 2 24 184 271 427 3.04e-36 130
Msa1437420 MtrunA17_Chr5g0408261 55.102 98 43 1 87 184 2 98 9.96e-34 116
Msa1437420 MtrunA17_Chr4g0003921 35.266 207 105 4 3 182 666 870 1.02e-32 123
Msa1437420 MtrunA17_Chr2g0287551 38.788 165 89 4 25 184 298 455 4.70e-32 119
Msa1437420 MtrunA17_Chr1g0165931 40.397 151 63 1 1 124 420 570 4.29e-31 118
Msa1437420 MtrunA17_Chr5g0430251 36.275 204 105 4 1 184 689 887 4.20e-30 115
Msa1437420 MtrunA17_Chr5g0428021 33.971 209 109 4 1 182 559 765 1.08e-29 114
Msa1437420 MtrunA17_Chr1g0202451 31.884 207 99 5 1 180 684 875 1.11e-29 114
Msa1437420 MtrunA17_Chr5g0447541 54.839 93 40 2 93 184 1 92 2.10e-29 104
Msa1437420 MtrunA17_Chr6g0488311 50.000 98 48 1 86 183 324 420 5.44e-28 108
Msa1437420 MtrunA17_Chr8g0392801 38.298 141 65 4 45 184 10 129 1.20e-23 90.5
Msa1437420 MtrunA17_Chr5g0412041 37.059 170 77 5 10 179 414 553 1.62e-22 94.0
Msa1437420 MtrunA17_Chr7g0220551 36.429 140 60 2 1 113 737 874 8.54e-22 92.0
Msa1437420 MtrunA17_Chr8g0364841 42.991 107 34 1 1 80 571 677 1.06e-18 82.8
Msa1437420 MtrunA17_Chr8g0391681 36.364 121 50 1 1 94 744 864 1.35e-18 82.8
Msa1437420 MtrunA17_Chr4g0052501 30.233 129 61 1 1 100 642 770 8.08e-17 77.4
Msa1437420 MtrunA17_Chr7g0259141 35.246 122 52 1 1 95 541 662 1.12e-16 77.0
Msa1437420 MtrunA17_Chr7g0272891 31.200 125 59 2 9 106 532 656 2.31e-16 76.3
Msa1437420 MtrunA17_Chr6g0476781 35.135 111 45 1 1 84 408 518 2.69e-16 75.9
Msa1437420 MtrunA17_Chr3g0130351 35.398 113 46 1 9 94 454 566 3.39e-16 75.5
Msa1437420 MtrunA17_Chr3g0106791 31.776 107 46 1 1 80 37 143 2.36e-15 70.1
Msa1437420 MtrunA17_Chr4g0051901 33.884 121 53 1 1 94 506 626 3.01e-15 72.8
Msa1437420 MtrunA17_Chr8g0346451 35.345 116 48 1 1 89 376 491 4.00e-15 72.4
Msa1437420 MtrunA17_Chr8g0366221 31.967 122 56 2 1 95 468 589 1.70e-14 70.9
Msa1437420 MtrunA17_Chr8g0380101 30.952 126 60 2 1 99 406 531 7.34e-14 68.9
Msa1437420 MtrunA17_Chr4g0006361 29.032 124 61 1 1 97 545 668 8.22e-14 68.9
Msa1437420 MtrunA17_Chr2g0303911 32.075 106 44 2 3 80 586 691 1.91e-13 67.8
Msa1437420 MtrunA17_Chr3g0141251 31.746 126 59 2 1 99 428 553 2.86e-13 67.0
Msa1437420 MtrunA17_Chr7g0263761 33.613 119 52 2 3 94 636 754 6.20e-13 66.2
Msa1437420 MtrunA17_Chr1g0186051 32.692 104 43 1 9 85 511 614 7.14e-13 65.9
Msa1437420 MtrunA17_Chr1g0146671 31.897 116 52 1 1 89 704 819 7.32e-13 66.2
Msa1437420 MtrunA17_Chr8g0386861 29.457 129 64 2 1 102 716 844 2.06e-12 64.7
Msa1437420 MtrunA17_Chr5g0396241 28.947 152 73 3 1 117 594 745 3.32e-12 64.3
Msa1437420 MtrunA17_Chr2g0321311 42.424 66 36 2 119 184 1 64 4.94e-12 58.5
Msa1437420 MtrunA17_Chr8g0349171 27.419 124 63 1 1 97 530 653 5.88e-12 63.5
Msa1437420 MtrunA17_Chr1g0192971 31.343 134 65 2 1 107 440 573 7.88e-12 63.2
Msa1437420 MtrunA17_Chr8g0371191 30.702 114 52 1 1 87 385 498 8.08e-12 62.8
Msa1437420 MtrunA17_Chr6g0477191 44.118 68 37 1 116 183 129 195 1.82e-11 60.1
Msa1437420 MtrunA17_Chr2g0312511 50.000 48 24 0 137 184 2 49 4.85e-11 55.5
Msa1437420 MtrunA17_Chr4g0004081 27.200 125 64 1 1 98 566 690 5.92e-11 60.5
Msa1437420 MtrunA17_Chr3g0139361 28.972 107 49 1 1 80 435 541 6.38e-11 60.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1437420 AT4G33990.2 49.289 211 79 2 1 184 607 816 1.70e-66 218
Msa1437420 AT4G33990.1 49.289 211 79 2 1 184 614 823 2.08e-66 217
Msa1437420 AT3G63370.1 48.585 212 80 3 1 184 750 960 7.80e-64 211
Msa1437420 AT4G30700.1 49.289 211 79 2 1 184 583 792 2.53e-63 209
Msa1437420 AT4G37380.1 44.550 211 89 2 1 184 423 632 2.60e-60 198
Msa1437420 AT2G27610.1 47.059 204 79 3 9 184 666 868 4.63e-60 201
Msa1437420 AT4G02750.1 45.498 211 87 2 1 184 572 781 1.58e-59 198
Msa1437420 AT3G49142.1 46.047 215 85 2 1 184 472 686 1.84e-59 197
Msa1437420 AT4G33170.1 46.445 211 85 2 1 184 781 990 3.00e-59 199
Msa1437420 AT2G03880.1 45.972 211 86 2 1 184 421 630 4.20e-59 195
Msa1437420 AT2G22070.1 46.919 211 84 2 1 184 577 786 1.97e-58 195
Msa1437420 AT3G23330.2 45.498 211 87 2 1 184 397 606 2.31e-58 192
Msa1437420 AT1G20230.1 42.654 211 93 2 1 184 551 760 3.33e-58 194
Msa1437420 AT3G23330.1 45.498 211 87 2 1 184 506 715 4.65e-58 193
Msa1437420 AT3G46790.1 44.076 211 90 2 1 184 448 657 4.74e-57 190
Msa1437420 AT2G01510.1 47.867 211 82 3 1 184 375 584 4.75e-56 186
Msa1437420 AT2G01510.2 47.867 211 82 3 1 184 375 584 4.75e-56 186
Msa1437420 AT1G08070.2 45.631 206 84 2 6 184 433 637 8.04e-56 186
Msa1437420 AT3G02010.1 42.925 212 92 2 1 184 615 825 9.92e-56 188
Msa1437420 AT1G08070.1 45.631 206 84 2 6 184 537 741 2.83e-55 186
Msa1437420 AT5G04780.1 45.813 203 82 3 9 184 434 635 6.70e-55 184
Msa1437420 AT4G16835.1 47.291 203 79 3 9 184 455 656 3.27e-54 182
Msa1437420 AT5G48910.1 43.128 211 92 2 1 184 437 646 4.74e-54 182
Msa1437420 AT1G56690.1 43.868 212 90 3 1 184 494 704 5.31e-54 182
Msa1437420 AT5G65570.1 45.714 210 84 3 3 184 531 738 9.14e-54 182
Msa1437420 AT3G08820.1 42.180 211 94 2 1 184 476 685 1.95e-53 181
Msa1437420 AT5G16860.1 41.706 211 95 2 1 184 641 850 2.12e-53 182
Msa1437420 AT1G25360.1 45.098 204 83 3 9 184 588 790 2.81e-53 181
Msa1437420 AT1G09410.1 42.925 212 92 3 1 184 495 705 2.96e-53 180
Msa1437420 AT3G49170.1 44.186 215 88 3 1 184 637 850 3.16e-53 181
Msa1437420 AT4G21065.2 44.076 211 90 3 1 184 253 462 3.32e-53 176
Msa1437420 AT1G31920.1 43.062 209 91 2 3 184 399 606 1.04e-52 177
Msa1437420 AT4G21065.1 44.076 211 90 3 1 184 386 595 2.13e-52 176
Msa1437420 AT5G52630.1 43.602 211 91 3 1 184 379 588 2.50e-52 176
Msa1437420 AT1G11290.1 43.602 211 90 3 1 184 601 809 2.83e-52 179
Msa1437420 AT1G68930.2 45.024 211 88 2 1 184 508 717 3.61e-52 177
Msa1437420 AT3G22690.3 43.602 211 91 2 1 184 602 811 3.61e-52 178
Msa1437420 AT3G24000.1 43.128 211 92 3 1 184 424 633 4.12e-52 176
Msa1437420 AT3G26782.1 42.453 212 92 3 1 184 450 659 4.16e-52 176
Msa1437420 AT3G22690.2 43.602 211 91 2 1 184 633 842 4.38e-52 178
Msa1437420 AT1G68930.1 45.024 211 88 2 1 184 534 743 4.51e-52 177
Msa1437420 AT4G13650.1 42.654 211 93 2 1 184 855 1064 4.74e-52 179
Msa1437420 AT5G40410.1 44.601 213 87 4 1 184 398 608 1.02e-51 175
Msa1437420 AT4G14850.1 42.654 211 93 2 1 184 475 684 2.15e-51 175
Msa1437420 AT2G33760.1 44.335 203 84 2 9 184 383 583 2.68e-51 173
Msa1437420 AT3G13770.2 41.791 201 89 2 11 184 396 595 4.61e-51 173
Msa1437420 AT2G29760.1 44.340 212 89 4 1 184 528 738 7.00e-51 174
Msa1437420 AT3G13770.1 41.791 201 89 2 11 184 429 628 7.64e-51 172
Msa1437420 AT2G41080.1 41.232 211 96 2 1 184 441 650 8.45e-51 173
Msa1437420 AT3G47530.1 41.981 212 94 3 1 184 381 591 1.03e-50 172
Msa1437420 AT3G22690.1 43.333 210 91 2 1 183 633 841 2.09e-50 174
Msa1437420 AT1G16480.1 39.810 211 99 3 1 184 728 937 4.26e-50 173
Msa1437420 AT3G57430.1 41.584 202 90 2 10 184 690 890 2.22e-49 171
Msa1437420 AT1G18485.1 42.654 211 93 3 1 184 761 970 2.31e-49 171
Msa1437420 AT5G09950.2 42.927 205 88 4 9 184 785 989 2.33e-49 171
Msa1437420 AT4G14820.1 42.593 216 92 3 1 184 507 722 2.35e-49 170
Msa1437420 AT5G09950.3 42.927 205 88 4 9 184 791 995 2.37e-49 171
Msa1437420 AT5G09950.1 42.927 205 88 4 9 184 791 995 2.37e-49 171
Msa1437420 AT3G12770.1 39.810 211 99 2 1 184 485 694 3.80e-49 169
Msa1437420 AT3G62890.1 40.758 211 97 2 1 184 364 573 4.21e-49 167
Msa1437420 AT4G37170.1 40.758 211 97 3 1 184 482 691 9.33e-49 168
Msa1437420 AT5G06540.1 40.566 212 97 3 1 184 412 622 1.49e-48 166
Msa1437420 AT3G03580.1 42.453 212 93 4 1 184 672 882 1.64e-48 168
Msa1437420 AT4G18750.1 40.758 211 97 2 1 184 662 871 1.78e-48 168
Msa1437420 AT5G03800.1 38.863 211 102 1 1 184 686 896 2.83e-48 168
Msa1437420 AT5G39680.1 40.191 209 97 2 3 184 503 710 6.26e-48 166
Msa1437420 AT5G15340.1 39.437 213 99 3 1 184 412 623 9.26e-48 164
Msa1437420 AT3G56550.2 39.713 209 97 3 4 184 374 581 1.44e-47 163
Msa1437420 AT3G56550.1 39.713 209 97 3 4 184 374 581 1.44e-47 163
Msa1437420 AT5G46460.1 43.128 211 90 5 1 184 490 697 1.83e-47 164
Msa1437420 AT5G66520.1 40.094 212 98 3 1 184 410 620 3.88e-47 162
Msa1437420 AT5G44230.2 39.623 212 99 3 1 184 350 560 1.43e-46 160
Msa1437420 AT5G44230.1 39.623 212 99 3 1 184 447 657 2.86e-46 160
Msa1437420 AT2G02980.1 40.686 204 92 3 9 184 401 603 3.67e-46 160
Msa1437420 AT4G14050.2 39.720 214 97 6 1 184 348 559 1.69e-45 157
Msa1437420 AT5G40405.2 38.389 211 102 2 1 184 403 612 2.45e-45 157
Msa1437420 AT5G40405.1 38.389 211 102 2 1 184 403 612 2.45e-45 157
Msa1437420 AT4G14050.1 39.720 214 97 6 1 184 401 612 2.66e-45 157
Msa1437420 AT5G13230.1 39.423 208 99 2 4 184 615 822 1.15e-44 157
Msa1437420 AT1G16480.2 37.981 208 101 3 1 181 711 917 2.42e-44 157
Msa1437420 AT3G14330.1 38.605 215 97 4 1 184 500 710 3.44e-44 155
Msa1437420 AT1G04840.1 38.863 211 101 3 1 184 456 665 5.54e-44 154
Msa1437420 AT1G34160.2 37.089 213 105 2 1 184 322 534 5.91e-44 153
Msa1437420 AT1G34160.1 37.089 213 105 2 1 184 369 581 8.72e-44 153
Msa1437420 AT3G49710.1 42.439 205 87 4 10 184 518 721 1.01e-43 154
Msa1437420 AT3G15130.1 38.318 214 102 3 1 184 476 689 9.22e-43 151
Msa1437420 AT5G50990.1 39.810 211 96 3 1 184 328 534 3.76e-42 148
Msa1437420 AT1G59720.1 39.367 221 96 6 1 184 419 638 4.74e-42 149
Msa1437420 AT3G11460.1 38.679 212 94 5 1 184 420 623 1.24e-41 147
Msa1437420 AT1G47580.1 56.481 108 46 1 77 184 133 239 3.18e-40 136
Msa1437420 AT1G74630.1 41.667 204 90 3 9 184 441 643 8.79e-40 143
Msa1437420 AT5G13270.1 38.679 212 93 4 1 184 550 752 1.05e-39 143
Msa1437420 AT1G74630.2 41.176 204 91 3 9 184 456 658 1.12e-39 142
Msa1437420 AT5G50390.1 35.749 207 101 4 9 184 496 701 5.07e-39 141
Msa1437420 AT2G15690.1 38.378 185 109 3 1 184 399 579 1.27e-37 136
Msa1437420 AT3G61170.1 39.779 181 81 2 1 154 558 737 2.83e-37 136
Msa1437420 AT4G01030.1 32.547 212 113 3 1 184 559 768 3.05e-37 136
Msa1437420 AT1G15510.1 38.095 210 100 4 1 182 659 866 4.58e-37 136
Msa1437420 AT1G71420.1 36.866 217 104 4 1 184 529 745 3.12e-36 133
Msa1437420 AT4G15720.1 35.616 219 103 4 1 184 401 616 4.06e-35 130
Msa1437420 AT4G32450.1 34.694 196 114 3 2 184 343 537 9.98e-34 125
Msa1437420 AT2G25580.2 33.663 202 113 4 1 184 417 615 2.97e-33 124
Msa1437420 AT2G25580.1 33.663 202 113 4 1 184 417 615 2.97e-33 124
Msa1437420 AT1G19720.1 35.377 212 105 4 1 184 687 894 2.30e-32 122
Msa1437420 AT1G29710.1 31.156 199 117 3 1 184 282 475 1.36e-25 102
Msa1437420 AT4G35130.1 29.808 208 111 4 8 184 601 804 1.43e-25 103
Msa1437420 AT2G34370.1 33.171 205 110 6 1 184 271 469 9.33e-22 91.7
Msa1437420 AT4G21300.1 34.711 121 52 1 1 94 706 826 1.21e-21 92.0
Msa1437420 AT3G63370.2 39.130 115 43 1 1 88 750 864 1.16e-19 86.3
Msa1437420 AT1G33350.2 34.821 112 46 2 1 85 426 537 2.78e-17 79.3
Msa1437420 AT1G33350.1 34.821 112 46 2 1 85 426 537 2.78e-17 79.3
Msa1437420 AT5G52850.1 26.794 209 110 5 1 180 691 885 1.08e-16 77.4
Msa1437420 AT3G09040.2 35.088 114 47 1 2 88 922 1035 2.22e-16 76.6
Msa1437420 AT3G09040.3 35.088 114 47 1 2 88 922 1035 2.22e-16 76.6
Msa1437420 AT3G09040.1 35.088 114 47 1 2 88 897 1010 2.49e-16 76.6
Msa1437420 AT3G09040.4 35.088 114 47 1 2 88 897 1010 2.49e-16 76.6
Msa1437420 AT5G08510.1 34.188 117 49 3 1 89 379 495 8.97e-16 74.7
Msa1437420 AT3G15930.1 33.071 127 58 2 1 100 531 657 2.77e-14 70.5
Msa1437420 AT3G02330.1 33.333 135 58 4 1 106 766 897 4.38e-14 70.1
Msa1437420 AT2G22410.1 33.913 115 49 1 1 88 552 666 4.72e-14 69.7
Msa1437420 AT3G05340.1 29.921 127 62 2 1 100 520 646 1.10e-13 68.9
Msa1437420 AT2G13600.1 32.174 115 51 2 1 88 555 669 1.74e-13 68.2
Msa1437420 AT1G71490.1 31.538 130 58 3 10 111 554 680 2.14e-13 68.2
Msa1437420 AT3G13880.1 33.663 101 40 1 10 83 631 731 9.11e-13 66.2
Msa1437420 AT1G56570.1 29.545 132 65 3 1 104 477 608 1.17e-12 65.9
Msa1437420 AT1G56570.2 29.545 132 65 3 1 104 477 608 1.17e-12 65.9
Msa1437420 AT3G29230.1 30.357 112 51 1 1 85 478 589 1.44e-12 65.5
Msa1437420 AT4G19191.1 27.338 139 68 2 1 112 521 653 5.28e-12 63.9
Msa1437420 AT4G16470.1 32.456 114 50 2 9 95 380 493 1.38e-11 62.8
Msa1437420 AT4G32430.1 30.000 120 52 3 7 94 643 762 5.10e-11 61.2
Msa1437420 AT4G32430.2 30.000 120 52 3 7 94 511 630 7.83e-11 60.5

Find 32 sgRNAs with CRISPR-Local

Find 56 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTTGCGTCCCGAACAATTA+TGG 0.207915 tig0028303:-27965 None:intergenic
AGCAAACCCCTTCATTAAAA+TGG 0.260195 tig0028303:-27996 None:intergenic
TTTGCTCATGTGGGGACTAT+TGG 0.262945 tig0028303:+28013 Msa1437420:CDS
CAAACAAGGGTGATCCTATT+AGG 0.302350 tig0028303:+27869 Msa1437420:CDS
GAAAAGCTTGCTATTGCATT+TGG 0.329277 tig0028303:+27832 Msa1437420:CDS
CTAATAGGATCACCCTTGTT+TGG 0.335040 tig0028303:-27868 None:intergenic
CTTGGAGCATGTAGAGTTCA+TGG 0.368603 tig0028303:+27443 Msa1437420:CDS
GAAAAGGTCCATAATTGTTC+GGG 0.373385 tig0028303:+27957 Msa1437420:CDS
TAATAGGATCACCCTTGTTT+GGG 0.377321 tig0028303:-27867 None:intergenic
TGCAACACAAATTCTGTATC+AGG 0.380704 tig0028303:-27763 None:intergenic
TGAAAAGGTCCATAATTGTT+CGG 0.391681 tig0028303:+27956 Msa1437420:CDS
CGTAATTAAGAAGTTGAAGA+TGG 0.464753 tig0028303:+27729 Msa1437420:CDS
AGGCTGTGGAGTGCTTTGCT+TGG 0.467174 tig0028303:+27425 Msa1437420:CDS
ATTAAGAAGTTGAAGATGGT+TGG 0.467880 tig0028303:+27733 Msa1437420:CDS
AGTTCATGGGAACATGGAAT+TGG 0.470199 tig0028303:+27457 Msa1437420:CDS
TCATAGATCTCCTTCGATTG+AGG 0.471859 tig0028303:-27694 None:intergenic
CTTAATTGCCATCCCAAACA+AGG 0.489748 tig0028303:+27855 Msa1437420:CDS
AATGAAGGGGTTTGCTCATG+TGG 0.490554 tig0028303:+28003 Msa1437420:CDS
AAAACATATCAGTTTAGTGT+TGG 0.508132 tig0028303:+27658 Msa1437420:CDS
ACTTCGATCCATGTCCATCC+AGG 0.533211 tig0028303:-27628 None:intergenic
TGGTATCAGAAGTTATGAAA+AGG 0.537473 tig0028303:+27941 Msa1437420:CDS
ATGAAGGGGTTTGCTCATGT+GGG 0.537734 tig0028303:+28004 Msa1437420:CDS
GAACATGGAATTGGCAGAAA+AGG 0.541114 tig0028303:+27466 Msa1437420:CDS
AGGATCACCCTTGTTTGGGA+TGG 0.560773 tig0028303:-27863 None:intergenic
TTGGAGCATGTAGAGTTCAT+GGG 0.575651 tig0028303:+27444 Msa1437420:CDS
CTGTAGTTCAAGTAGAGACT+CGG 0.575741 tig0028303:-27492 None:intergenic
ATTTGTGTTGCAAGATGTTG+AGG 0.590269 tig0028303:+27774 Msa1437420:CDS
TAGATCTCATCCTCAATCGA+AGG 0.606510 tig0028303:+27684 Msa1437420:CDS
TGAAGGGGTTTGCTCATGTG+GGG 0.620931 tig0028303:+28005 Msa1437420:CDS
TGTGTTGCAAGATGTTGAGG+AGG 0.641990 tig0028303:+27777 Msa1437420:CDS
ATGTAGAGTTCATGGGAACA+TGG 0.643695 tig0028303:+27451 Msa1437420:CDS
TTAATTGCCATCCCAAACAA+GGG 0.683011 tig0028303:+27856 Msa1437420:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
! TCTAATATTTATGCAAAAGC+CGG + tig0028303:27545-27564 Msa1437420:intron 25.0%
! AAAACATATCAGTTTAGTGT+TGG + tig0028303:27658-27677 Msa1437420:CDS 25.0%
!!! AGATTTTTAGAGATCCTAAT+AGG - tig0028303:27886-27905 None:intergenic 25.0%
CGTAATTAAGAAGTTGAAGA+TGG + tig0028303:27729-27748 Msa1437420:CDS 30.0%
ATTAAGAAGTTGAAGATGGT+TGG + tig0028303:27733-27752 Msa1437420:CDS 30.0%
TGGTATCAGAAGTTATGAAA+AGG + tig0028303:27941-27960 Msa1437420:CDS 30.0%
TGAAAAGGTCCATAATTGTT+CGG + tig0028303:27956-27975 Msa1437420:CDS 30.0%
!! GCTTTCACCATTTTAATGAA+GGG + tig0028303:27989-28008 Msa1437420:CDS 30.0%
!! CTTTCACCATTTTAATGAAG+GGG + tig0028303:27990-28009 Msa1437420:CDS 30.0%
TGAATGTTGAAAAAGACGAG+AGG + tig0028303:27405-27424 Msa1437420:CDS 35.0%
AACTACAGCCAAAAAATCCA+GGG + tig0028303:27507-27526 Msa1437420:CDS 35.0%
!!! ACATAAACCCCTGGATTTTT+TGG - tig0028303:27518-27537 None:intergenic 35.0%
GATAGTAATACATAAACCCC+TGG - tig0028303:27527-27546 None:intergenic 35.0%
TGCAACACAAATTCTGTATC+AGG - tig0028303:27766-27785 None:intergenic 35.0%
ATTTGTGTTGCAAGATGTTG+AGG + tig0028303:27774-27793 Msa1437420:CDS 35.0%
!! GAAAAGCTTGCTATTGCATT+TGG + tig0028303:27832-27851 Msa1437420:CDS 35.0%
TTAATTGCCATCCCAAACAA+GGG + tig0028303:27856-27875 Msa1437420:CDS 35.0%
! TAATAGGATCACCCTTGTTT+GGG - tig0028303:27870-27889 None:intergenic 35.0%
TCTAAAAATCTGAGAGTCTG+TGG + tig0028303:27895-27914 Msa1437420:CDS 35.0%
! TTGTCACACGTTTTGTAAGA+TGG + tig0028303:27921-27940 Msa1437420:CDS 35.0%
GAAAAGGTCCATAATTGTTC+GGG + tig0028303:27957-27976 Msa1437420:CDS 35.0%
!! CGCTTTCACCATTTTAATGA+AGG + tig0028303:27988-28007 Msa1437420:CDS 35.0%
AGCAAACCCCTTCATTAAAA+TGG - tig0028303:27999-28018 None:intergenic 35.0%
TTGGAGCATGTAGAGTTCAT+GGG + tig0028303:27444-27463 Msa1437420:CDS 40.0%
ATGTAGAGTTCATGGGAACA+TGG + tig0028303:27451-27470 Msa1437420:CDS 40.0%
AGTTCATGGGAACATGGAAT+TGG + tig0028303:27457-27476 Msa1437420:CDS 40.0%
GAACATGGAATTGGCAGAAA+AGG + tig0028303:27466-27485 Msa1437420:CDS 40.0%
CTGTAGTTCAAGTAGAGACT+CGG - tig0028303:27495-27514 None:intergenic 40.0%
GAACTACAGCCAAAAAATCC+AGG + tig0028303:27506-27525 Msa1437420:CDS 40.0%
ACTACAGCCAAAAAATCCAG+GGG + tig0028303:27508-27527 Msa1437420:CDS 40.0%
TTTATGCAAAAGCCGGTAAG+TGG + tig0028303:27552-27571 Msa1437420:intron 40.0%
TTATGCAAAAGCCGGTAAGT+GGG + tig0028303:27553-27572 Msa1437420:intron 40.0%
TGGGAAAAGTGGCAGAATTT+AGG + tig0028303:27572-27591 Msa1437420:intron 40.0%
GGGAAAAGTGGCAGAATTTA+GGG + tig0028303:27573-27592 Msa1437420:intron 40.0%
! TTAGGGATTTGATGACACAG+AGG + tig0028303:27590-27609 Msa1437420:intron 40.0%
AGGAAGCTGAAAAAAGTTCC+TGG + tig0028303:27610-27629 Msa1437420:CDS 40.0%
AGCTGAAAAAAGTTCCTGGA+TGG + tig0028303:27614-27633 Msa1437420:CDS 40.0%
AAAAAGTTCCTGGATGGACA+TGG + tig0028303:27620-27639 Msa1437420:CDS 40.0%
TAGATCTCATCCTCAATCGA+AGG + tig0028303:27684-27703 Msa1437420:CDS 40.0%
TCATAGATCTCCTTCGATTG+AGG - tig0028303:27697-27716 None:intergenic 40.0%
CTTAATTGCCATCCCAAACA+AGG + tig0028303:27855-27874 Msa1437420:CDS 40.0%
CTAATAGGATCACCCTTGTT+TGG - tig0028303:27871-27890 None:intergenic 40.0%
CAAACAAGGGTGATCCTATT+AGG + tig0028303:27869-27888 Msa1437420:CDS 40.0%
ATTTGCGTCCCGAACAATTA+TGG - tig0028303:27968-27987 None:intergenic 40.0%
TTGAAAAAGACGAGAGGCTG+TGG + tig0028303:27411-27430 Msa1437420:CDS 45.0%
CTTGGAGCATGTAGAGTTCA+TGG + tig0028303:27443-27462 Msa1437420:CDS 45.0%
TGTGTTGCAAGATGTTGAGG+AGG + tig0028303:27777-27796 Msa1437420:CDS 45.0%
! AATGAAGGGGTTTGCTCATG+TGG + tig0028303:28003-28022 Msa1437420:CDS 45.0%
! ATGAAGGGGTTTGCTCATGT+GGG + tig0028303:28004-28023 Msa1437420:CDS 45.0%
TTTGCTCATGTGGGGACTAT+TGG + tig0028303:28013-28032 Msa1437420:CDS 45.0%
AAGCCGGTAAGTGGGAAAAG+TGG + tig0028303:27561-27580 Msa1437420:intron 50.0%
!!! CTGCCACTTTTCCCACTTAC+CGG - tig0028303:27567-27586 None:intergenic 50.0%
ACTTCGATCCATGTCCATCC+AGG - tig0028303:27631-27650 None:intergenic 50.0%
! AGGATCACCCTTGTTTGGGA+TGG - tig0028303:27866-27885 None:intergenic 50.0%
! TGAAGGGGTTTGCTCATGTG+GGG + tig0028303:28005-28024 Msa1437420:CDS 50.0%
! AGGCTGTGGAGTGCTTTGCT+TGG + tig0028303:27425-27444 Msa1437420:CDS 55.0%
Chromosome Type Strat End Strand Name
tig0028303 gene 27404 28038 27404 ID=Msa1437420;Name=Msa1437420
tig0028303 mRNA 27404 28038 27404 ID=Msa1437420-mRNA-1;Parent=Msa1437420;Name=Msa1437420-mRNA-1;_AED=0.34;_eAED=0.34;_QI=0|0|0|1|1|1|2|0|184
tig0028303 exon 27404 27529 27404 ID=Msa1437420-mRNA-1:exon:10677;Parent=Msa1437420-mRNA-1
tig0028303 exon 27610 28038 27610 ID=Msa1437420-mRNA-1:exon:10678;Parent=Msa1437420-mRNA-1
tig0028303 CDS 27404 27529 27404 ID=Msa1437420-mRNA-1:cds;Parent=Msa1437420-mRNA-1
tig0028303 CDS 27610 28038 27610 ID=Msa1437420-mRNA-1:cds;Parent=Msa1437420-mRNA-1
Gene Sequence

>Msa1437420

ATGAATGTTGAAAAAGACGAGAGGCTGTGGAGTGCTTTGCTTGGAGCATGTAGAGTTCATGGGAACATGGAATTGGCAGAAAAGGTAGCCGAGTCTCTACTTGAACTACAGCCAAAAAATCCAGGGAGGAAGCTGAAAAAAGTTCCTGGATGGACATGGATCGAAGTAGATAACAAAACATATCAGTTTAGTGTTGGAGATAGATCTCATCCTCAATCGAAGGAGATCTATGAAATGTTGACTAGCGTAATTAAGAAGTTGAAGATGGTTGGTTATGTACCTGATACAGAATTTGTGTTGCAAGATGTTGAGGAGGAAGTTAAGAAAGAAATGTTGTATACACACAGTGAAAAGCTTGCTATTGCATTTGGCTTAATTGCCATCCCAAACAAGGGTGATCCTATTAGGATCTCTAAAAATCTGAGAGTCTGTGGTGATTGTCACACGTTTTGTAAGATGGTATCAGAAGTTATGAAAAGGTCCATAATTGTTCGGGACGCAAATCGCTTTCACCATTTTAATGAAGGGGTTTGCTCATGTGGGGACTATTGGTAG
Protein sequence

>Msa1437420

MNVEKDERLWSALLGACRVHGNMELAEKVAESLLELQPKNPGRKLKKVPGWTWIEVDNKTYQFSVGDRSHPQSKEIYEMLTSVIKKLKMVGYVPDTEFVLQDVEEEVKKEMLYTHSEKLAIAFGLIAIPNKGDPIRISKNLRVCGDCHTFCKMVSEVMKRSIIVRDANRFHHFNEGVCSCGDYW*