AlfalfaGEDB | Msa1439970

M. sativa cultivar zhongmu-4 / Msa1439970

KEGG: -
GO: GO:0000003 GO:0000151 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0006355 GO:0007276 GO:0007283 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0012505 GO:0016363 GO:0019219 GO:0019222 GO:0019953 GO:0022414 GO:0031323 GO:0031326 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032501 GO:0032504 GO:0032991 GO:0034399 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0044703 GO:0048232 GO:0048609 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051704 GO:0060255 GO:0065007 GO:0070013 GO:0080090 GO:1902494 GO:1903506 GO:1990234 GO:2000112 GO:2001141
PFAM: PF00651.34

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1439970	XP_003609679.1	98.610	863	12	0	2	864	1	863	0.0	1779

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1439970	sp\|Q920G9\|GMCL1_MOUSE	26.295	251	167	6	48	294	87	323	9.33e-15	81.6

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1439970	G7JLI1	98.610	863	12	0	2	864	1	863	0.0	1779

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TFs/TRs:

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Gene ID	Type	Classification
Msa1439970	TR	TRAF

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa1217850	Msa1439970	0.949498	1.126238e-107	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1439970	MtrunA17_Chr4g0067401	98.610	863	12	0	2	864	1	863	0.0	1779

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1439970	AT4G15840.1	59.237	839	288	16	35	864	43	836	0.0	928
Msa1439970	AT4G15840.2	56.342	749	273	16	35	774	43	746	0.0	767

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Find 272 sgRNAs with CRISPR-Local

Find 476 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGGTGACTGCACGGTATC+AGG	0.365867	tig0028916:-29195	Msa1439970:intron
AAATGATGGTCTATGGCTGC+AGG	0.554515	tig0028916:-31856	Msa1439970:intron
AACACAAAGGGAACAAGAAA+TGG	0.359332	tig0028916:-30948	Msa1439970:CDS
AACATACCATTGGTATAGAA+TGG	0.436452	tig0028916:-30859	Msa1439970:CDS
AACCAAGATTATGGCATTCA+TGG	0.388083	tig0028916:-33001	Msa1439970:CDS
AACTACATTTGTTCCTGCAG+CGG	0.583833	tig0028916:-31164	Msa1439970:CDS
AAGAGGGAAATGTTGGTGTT+CGG	0.499834	tig0028916:-29061	Msa1439970:CDS
AAGATGTTGGAAACTGACTT+GGG	0.551013	tig0028916:-32485	Msa1439970:CDS
AAGATTGAACATCCTGCACA+TGG	0.639055	tig0028916:-32587	Msa1439970:CDS
AAGCTCCTAAAGGATGGGGT+TGG	0.613769	tig0028916:-29006	Msa1439970:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
CAAATTGAAGGTTTCAATTC+CGG	-	tig0028916:28477-28496	Msa1439970:intron	30.0%
CGATATAGTTGTTAATGCAA+TGG	-	tig0028916:28509-28528	Msa1439970:intron	30.0%
ATAACCTGAAATATGAACTG+CGG	+	tig0028916:28569-28588	None:intergenic	30.0%
AATGAAACAAGGAATGATTG+TGG	+	tig0028916:28598-28617	None:intergenic	30.0%
GATAGAGAGAAAATGAAACA+AGG	+	tig0028916:28609-28628	None:intergenic	30.0%
TGATAACAATGTTAATGACG+AGG	-	tig0028916:29224-29243	Msa1439970:CDS	30.0%
GTGTATCATTACATCTATGT+AGG	-	tig0028916:29469-29488	Msa1439970:intron	30.0%
TAACCACAAAACCCAAATAA+AGG	+	tig0028916:29968-29987	None:intergenic	30.0%
CTTCATGAAAAGGTTTGAAT+TGG	-	tig0028916:30028-30047	Msa1439970:intron	30.0%
ATTCATTCTGATAACACCAA+GGG	-	tig0028916:30137-30156	Msa1439970:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
tig0028916	gene	28164	34531	28164	ID=Msa1439970;Name=Msa1439970
tig0028916	mRNA	28164	34531	28164	ID=Msa1439970-mRNA-1;Parent=Msa1439970;Name=Msa1439970-mRNA-1;_AED=0.11;_eAED=0.11;_QI=145\|1\|1\|1\|0.91\|0.84\|13\|312\|864
tig0028916	exon	28164	28466	28164	ID=Msa1439970-mRNA-1:exon:12046;Parent=Msa1439970-mRNA-1
tig0028916	exon	28913	29098	28913	ID=Msa1439970-mRNA-1:exon:12045;Parent=Msa1439970-mRNA-1
tig0028916	exon	29196	29243	29196	ID=Msa1439970-mRNA-1:exon:12044;Parent=Msa1439970-mRNA-1
tig0028916	exon	29515	29564	29515	ID=Msa1439970-mRNA-1:exon:12043;Parent=Msa1439970-mRNA-1
tig0028916	exon	29657	29708	29657	ID=Msa1439970-mRNA-1:exon:12042;Parent=Msa1439970-mRNA-1
tig0028916	exon	29799	29883	29799	ID=Msa1439970-mRNA-1:exon:12041;Parent=Msa1439970-mRNA-1
tig0028916	exon	30785	31461	30785	ID=Msa1439970-mRNA-1:exon:12040;Parent=Msa1439970-mRNA-1
tig0028916	exon	31857	32655	31857	ID=Msa1439970-mRNA-1:exon:12039;Parent=Msa1439970-mRNA-1
tig0028916	exon	32747	32826	32747	ID=Msa1439970-mRNA-1:exon:12038;Parent=Msa1439970-mRNA-1
tig0028916	exon	32937	33035	32937	ID=Msa1439970-mRNA-1:exon:12037;Parent=Msa1439970-mRNA-1
tig0028916	exon	33136	33204	33136	ID=Msa1439970-mRNA-1:exon:12036;Parent=Msa1439970-mRNA-1
tig0028916	exon	33348	33531	33348	ID=Msa1439970-mRNA-1:exon:12035;Parent=Msa1439970-mRNA-1
tig0028916	exon	34112	34531	34112	ID=Msa1439970-mRNA-1:exon:12034;Parent=Msa1439970-mRNA-1
tig0028916	five_prime_UTR	34387	34531	34387	ID=Msa1439970-mRNA-1:five_prime_utr;Parent=Msa1439970-mRNA-1
tig0028916	CDS	34112	34386	34112	ID=Msa1439970-mRNA-1:cds;Parent=Msa1439970-mRNA-1
tig0028916	CDS	33348	33531	33348	ID=Msa1439970-mRNA-1:cds;Parent=Msa1439970-mRNA-1
tig0028916	CDS	33136	33204	33136	ID=Msa1439970-mRNA-1:cds;Parent=Msa1439970-mRNA-1
tig0028916	CDS	32937	33035	32937	ID=Msa1439970-mRNA-1:cds;Parent=Msa1439970-mRNA-1
tig0028916	CDS	32747	32826	32747	ID=Msa1439970-mRNA-1:cds;Parent=Msa1439970-mRNA-1
tig0028916	CDS	31857	32655	31857	ID=Msa1439970-mRNA-1:cds;Parent=Msa1439970-mRNA-1
tig0028916	CDS	30785	31461	30785	ID=Msa1439970-mRNA-1:cds;Parent=Msa1439970-mRNA-1
tig0028916	CDS	29799	29883	29799	ID=Msa1439970-mRNA-1:cds;Parent=Msa1439970-mRNA-1
tig0028916	CDS	29657	29708	29657	ID=Msa1439970-mRNA-1:cds;Parent=Msa1439970-mRNA-1
tig0028916	CDS	29515	29564	29515	ID=Msa1439970-mRNA-1:cds;Parent=Msa1439970-mRNA-1
tig0028916	CDS	29196	29243	29196	ID=Msa1439970-mRNA-1:cds;Parent=Msa1439970-mRNA-1
tig0028916	CDS	28922	29098	28922	ID=Msa1439970-mRNA-1:cds;Parent=Msa1439970-mRNA-1
tig0028916	three_prime_UTR	28913	28921	28913	ID=Msa1439970-mRNA-1:three_prime_utr;Parent=Msa1439970-mRNA-1
tig0028916	three_prime_UTR	28164	28466	28164	ID=Msa1439970-mRNA-1:three_prime_utr;Parent=Msa1439970-mRNA-1

Gene Sequence

>Msa1439970

ATGATGGAGAACCCTCAATATCCAAACAACCCTCCTCCTTCACCCTATCACCAACGCAGCGCTTCCATTCCCAAGCAGCCATCATCTCACCATTCCGATAACAATGATCCAACCACCGCTGAATTACGTGCTCTCGATTGTAACCTCGCTTCCCTCTGCGAACATGTTCAAATTGAAGGTTTCAATTCCGGCTCTTTTTCCGATATAGTTGTTAATGCAATGGGTTCCACTTATCACCTTCATCGTCTCATCCTCTCCCGCAGTTCATATTTCAGGAACATGCTTCATGGTCCCTGGAAAGAAGCCAGTGCTGCTATTGTGACCCTGCAAATCGATGATAACAATGTTAATGACGAGGCTATTGCAATTGCCTTGGCATATCTTTATGGGAACCACCCTAAACTTAATGATAATAATGCATTTCGTGTCCTTGCTGCCGCTTCCTTTCTCGACCTTCAGGATTTATGTGCTATATGTACAGATTTCATTATATCTGAGCTATGGACTTCAAACTTCTTGGCTTATCAGGTGTTTGCGGAGAACCAAGATTATGGCATTCATGGGGAGCGTGTTAGAACTGCTTGTTGGGGCTACCTCTGTCAAAGTGGCGGCATGGAGTTGAGAGAGGTGCTTCCTAAACTTTCATCTCATACATTACATGCATTACTGACCTCTAATGATCTGTGGATACCCTGTGAAGAGAAGCGGTTTGAATTGGCTTTCCACACATTCCTGGCAAAAAGTGCTCACTGCAAGATTGAACATCCTGCACATGGAATTCCTGGTTCTGAGTCTGGAACTGGCATTCATTCTGATAACACCAAGGGAAAAGGTATAGCTGATGGCTGCACTAACAAGATGTTGGAAACTGACTTGGGGAAAATGAGTCTTAAAAGTGATCTAAAGGACACTAGCATGCCTAACCTTTTAGTTGAGCTTGGAGATTCAGAAGGAGACTTCAACAGTGACATTTCTGATTCCAATCAACGGGTTCAACTTGCTTCATATGCCATTTCACCAAACTTGAATCCATCGTATCCTTGTGATATGGAAGGACCTTCATTGGGTAATTCATTGTCTGATCCAGACGGGGTGAGAACATCATGTTATGTTGAGGTGCCTCTTGGTGCTGGAACAACTACTGGAGTGGGTATTGAAGGGCCTTCTGAGGAAGGATCCTGCTACCATTCAGATAACAACAATAGGTTGGTCAGAGATCAATCAAGAGATTCTTTTTCATCGAGTTCTTGTAGTGGGCTCACTTCCAGTGAATGGGGAAGATATGGAACCCCTTTGCTTTCATGGGGTGGCCATATAGGCAGAAAACAGGTCAAAGCTCATCCCAGAGGAAACTATAGAGATGAAGACGATGTATTTCTTAATATATTTGAAGGGGGCTCACTTTTATATTGCAATATGTCTTTTGATGCACTTTTAAATGTCAGAAAGCAGCTTGAAGAGATAGGATTTCCTTGCAAAGCTGTAAATGATGGTCTATGGCTGCAGATGCTTCTTAGTCAGAGGGTACAAGAGATTGCTGCTGATACATGCAGAGTTTGTTCTCTTATGACTATGTCTTGTACTTGCCATAAGCAGTTTGCATTTTTACATGGATCTACCACCGGATCTTACATACAAGAACATAATCATAACAATATACCTGGGGGTGGTGGAAATATATATGTTGCTGAATCTTCTACAGGTGAAAGAAATGGCTCTTTTAGACCTGTACGGGTACATGTTAGAGGTGCTATTGATGGGCTTGCAGGTATTGGCCGTGGAACTACATTTGTTCCTGCAGCGGCTTCACCTCCTACACGATTTGTCTTTTCTCGTGTGCCATTTGGCGTTGGCAACAGAAACTACCCTCAGTCTGCAGCCAATGATGATTCAGAAGCACGTGCTGATCACAATGGAGACCTGTCTGGAGATGGATTGACAGCTTTAGTCGGGCTTAGCCAGGGAGGGAATTATGGAACAAATGTACATACAGAGCTAACACAAAGGGAACAAGAAATGGGATTGCAAAGTACTGCTGGGGGTGCAAGTACTGGTGGTATTCCCGTACAATTGTTAGAGACACCAGAACATACCATTGGTATAGAATGGGAGAATGACAACAGTTCTTCTATATCATTGGATTTGAAAACACCTTTAAGCCATTTCCCCCCTTTTCGCTTTGGTGTAAGTTTTGAGGAAGTGCACAGGCTTGGTGATGGCCAGGTCAAGCATTCTCCAGAAGTTTTCTATGCTGGTTCTTTGTGGAAGGTCAGTATTCAGGCTTTTAATGATGAAGACCCCCAGGGACGGCGCACCCTTGGATTGTTTCTTCACCGTCGGAAGGCAGAGATAACTGATGTGCACAGGAAGGTACATATGTATGTTGACTCGCGTGAAAAGGTGACTGCACGGTATCAGTTGACTTGCCCATCCAAGAGGGAAATGTTGGTGTTCGGAAGCTTTAAACAAACGGGCACTCTTCTACCTAAAGCTCCTAAAGGATGGGGTTGGCGAACTGCTCTACTATTTGATGAGCTTGCTGATCTTCTACAAAATGGAGCCCTAAGAGTTATTGCTGTAGTGCAGCTTGTTTGA

Protein sequence

>Msa1439970

MMENPQYPNNPPPSPYHQRSASIPKQPSSHHSDNNDPTTAELRALDCNLASLCEHVQIEGFNSGSFSDIVVNAMGSTYHLHRLILSRSSYFRNMLHGPWKEASAAIVTLQIDDNNVNDEAIAIALAYLYGNHPKLNDNNAFRVLAAASFLDLQDLCAICTDFIISELWTSNFLAYQVFAENQDYGIHGERVRTACWGYLCQSGGMELREVLPKLSSHTLHALLTSNDLWIPCEEKRFELAFHTFLAKSAHCKIEHPAHGIPGSESGTGIHSDNTKGKGIADGCTNKMLETDLGKMSLKSDLKDTSMPNLLVELGDSEGDFNSDISDSNQRVQLASYAISPNLNPSYPCDMEGPSLGNSLSDPDGVRTSCYVEVPLGAGTTTGVGIEGPSEEGSCYHSDNNNRLVRDQSRDSFSSSSCSGLTSSEWGRYGTPLLSWGGHIGRKQVKAHPRGNYRDEDDVFLNIFEGGSLLYCNMSFDALLNVRKQLEEIGFPCKAVNDGLWLQMLLSQRVQEIAADTCRVCSLMTMSCTCHKQFAFLHGSTTGSYIQEHNHNNIPGGGGNIYVAESSTGERNGSFRPVRVHVRGAIDGLAGIGRGTTFVPAAASPPTRFVFSRVPFGVGNRNYPQSAANDDSEARADHNGDLSGDGLTALVGLSQGGNYGTNVHTELTQREQEMGLQSTAGGASTGGIPVQLLETPEHTIGIEWENDNSSSISLDLKTPLSHFPPFRFGVSFEEVHRLGDGQVKHSPEVFYAGSLWKVSIQAFNDEDPQGRRTLGLFLHRRKAEITDVHRKVHMYVDSREKVTARYQLTCPSKREMLVFGSFKQTGTLLPKAPKGWGWRTALLFDELADLLQNGALRVIAVVQLV*