AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1440840

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1440840 MtrunA17_Chr6g0453551 92.966 327 12 1 1 327 1 316 0.0 634
Msa1440840 MtrunA17_Chr7g0217941 76.758 327 65 1 1 327 1 316 0.0 535
Msa1440840 MtrunA17_Chr6g0487101 43.671 316 148 6 2 307 80 375 2.90e-83 256
Msa1440840 MtrunA17_Chr8g0389771 42.525 301 150 4 14 307 88 372 3.98e-81 251
Msa1440840 MtrunA17_Chr1g0194311 41.558 308 156 6 6 307 74 363 2.00e-71 226
Msa1440840 MtrunA17_Chr7g0258341 39.623 318 151 5 6 307 90 382 2.41e-67 216
Msa1440840 MtrunA17_Chr5g0399221 37.578 322 168 8 5 316 62 360 2.25e-64 207
Msa1440840 MtrunA17_Chr4g0070051 38.125 320 151 10 5 309 53 340 2.65e-63 204
Msa1440840 MtrunA17_Chr5g0446301 39.145 304 159 7 12 307 67 352 8.21e-63 203
Msa1440840 MtrunA17_Chr8g0345281 35.873 315 167 5 6 306 279 572 8.84e-63 209
Msa1440840 MtrunA17_Chr7g0265201 38.679 318 151 6 2 307 95 380 2.20e-59 195
Msa1440840 MtrunA17_Chr6g0466961 35.048 311 173 5 3 309 36 321 1.96e-58 191
Msa1440840 MtrunA17_Chr4g0069881 35.647 317 168 5 5 306 223 518 5.55e-57 192
Msa1440840 MtrunA17_Chr7g0272141 37.374 297 155 5 8 297 243 515 1.49e-56 192
Msa1440840 MtrunA17_Chr8g0351871 35.604 323 162 8 2 309 28 319 3.01e-56 185
Msa1440840 MtrunA17_Chr4g0018371 35.473 296 157 5 6 288 227 501 1.11e-55 189
Msa1440840 MtrunA17_Chr4g0037751 33.548 310 174 5 5 306 70 355 1.20e-55 185
Msa1440840 MtrunA17_Chr3g0079351 34.169 319 169 7 6 306 215 510 1.95e-55 188
Msa1440840 MtrunA17_Chr2g0294321 35.093 322 170 6 6 315 56 350 3.86e-55 183
Msa1440840 MtrunA17_Chr3g0079361 33.856 319 170 7 6 306 215 510 8.79e-55 186
Msa1440840 MtrunA17_Chr4g0069841 33.758 314 173 6 8 307 208 500 1.01e-54 186
Msa1440840 MtrunA17_Chr3g0090091 32.456 342 184 9 4 327 214 526 1.51e-54 186
Msa1440840 MtrunA17_Chr7g0269541 35.849 318 167 7 4 306 244 539 1.52e-54 186
Msa1440840 MtrunA17_Chr3g0079341 34.899 298 156 6 6 288 215 489 3.32e-54 185
Msa1440840 MtrunA17_Chr5g0420831 32.581 310 177 4 5 306 70 355 4.32e-54 181
Msa1440840 MtrunA17_Chr1g0192321 33.828 337 181 9 6 327 272 581 4.70e-53 183
Msa1440840 MtrunA17_Chr6g0466951 32.903 310 174 6 6 309 69 350 1.56e-52 176
Msa1440840 MtrunA17_Chr2g0302021 33.228 316 176 5 6 307 215 509 2.03e-52 180
Msa1440840 MtrunA17_Chr4g0011751 33.333 321 176 7 6 309 176 475 2.25e-52 179
Msa1440840 MtrunA17_Chr7g0269511 33.435 329 179 7 5 317 251 555 9.05e-52 179
Msa1440840 MtrunA17_Chr1g0192331 34.049 326 176 6 6 313 214 518 9.32e-52 179
Msa1440840 MtrunA17_Chr1g0147051 34.169 319 170 7 5 306 295 590 1.46e-51 179
Msa1440840 MtrunA17_Chr3g0126771 33.228 316 175 7 6 306 286 580 1.62e-51 179
Msa1440840 MtrunA17_Chr4g0069861 33.546 313 173 6 8 306 209 500 1.98e-51 177
Msa1440840 MtrunA17_Chr4g0011771 34.125 337 176 9 6 327 206 511 5.36e-51 176
Msa1440840 MtrunA17_Chr1g0175661 33.628 339 178 10 5 325 245 554 9.32e-51 176
Msa1440840 MtrunA17_Chr7g0233801 31.329 316 181 6 6 306 242 536 9.90e-51 176
Msa1440840 MtrunA17_Chr7g0269521 33.435 329 179 8 5 317 249 553 1.01e-50 176
Msa1440840 MtrunA17_Chr1g0195301 33.731 335 177 10 10 327 247 553 1.03e-50 176
Msa1440840 MtrunA17_Chr1g0195321 33.731 335 177 10 10 327 247 553 1.03e-50 176
Msa1440840 MtrunA17_Chr8g0354901 32.907 313 180 5 6 309 276 567 1.18e-50 177
Msa1440840 MtrunA17_Chr2g0295551 31.045 335 190 8 8 326 252 561 3.19e-50 175
Msa1440840 MtrunA17_Chr3g0080381 34.472 322 171 7 1 305 312 610 1.00e-49 175
Msa1440840 MtrunA17_Chr3g0080391 32.903 310 178 5 6 306 269 557 1.27e-49 174
Msa1440840 MtrunA17_Chr7g0272151 34.333 300 162 6 6 291 271 549 1.67e-49 174
Msa1440840 MtrunA17_Chr1g0195331 33.433 335 178 10 10 327 247 553 2.19e-49 173
Msa1440840 MtrunA17_Chr8g0391311 35.254 295 158 5 6 288 230 503 3.09e-49 172
Msa1440840 MtrunA17_Chr2g0295531 32.143 336 189 9 6 326 232 543 3.19e-49 173
Msa1440840 MtrunA17_Chr8g0391291 34.237 295 161 5 6 288 228 501 6.71e-49 171
Msa1440840 MtrunA17_Chr1g0161731 33.754 317 169 6 6 309 48 336 1.45e-48 166
Msa1440840 MtrunA17_Chr7g0233831 32.095 296 167 5 6 288 243 517 3.22e-48 169
Msa1440840 MtrunA17_Chr4g0011791 34.713 314 166 9 6 306 205 492 5.36e-48 168
Msa1440840 MtrunA17_Chr8g0354911 34.899 298 157 5 6 288 300 575 8.47e-48 169
Msa1440840 MtrunA17_Chr1g0195351 33.134 335 177 11 10 327 247 551 1.03e-47 168
Msa1440840 MtrunA17_Chr8g0345211 33.645 321 175 8 8 315 276 571 1.22e-47 168
Msa1440840 MtrunA17_Chr7g0233771 31.546 317 180 7 6 306 242 537 1.26e-47 168
Msa1440840 MtrunA17_Chr2g0295851 32.075 318 172 8 6 315 55 336 2.13e-47 162
Msa1440840 MtrunA17_Chr7g0269531 30.882 340 187 8 5 325 251 561 9.60e-47 166
Msa1440840 MtrunA17_Chr8g0380581 31.532 333 188 9 8 326 67 373 3.35e-46 160
Msa1440840 MtrunA17_Chr1g0192311 31.861 317 178 8 6 305 257 552 5.25e-46 164
Msa1440840 MtrunA17_Chr1g0192281 31.861 317 178 8 6 305 257 552 5.25e-46 164
Msa1440840 MtrunA17_Chr7g0270691 34.286 315 173 8 5 306 239 532 5.53e-46 164
Msa1440840 MtrunA17_Chr7g0234711 38.028 213 117 4 109 306 40 252 7.15e-46 156
Msa1440840 MtrunA17_Chr8g0384121 30.887 327 185 4 1 306 241 547 1.62e-45 162
Msa1440840 MtrunA17_Chr4g0000121 31.861 317 178 8 6 305 244 539 2.09e-45 162
Msa1440840 MtrunA17_Chr1g0194091 30.994 342 193 8 3 326 250 566 7.02e-45 161
Msa1440840 MtrunA17_Chr1g0195311 37.959 245 133 6 96 327 74 312 7.38e-45 155
Msa1440840 MtrunA17_Chr2g0302001 38.053 226 127 3 94 306 195 420 8.32e-45 158
Msa1440840 MtrunA17_Chr1g0192301 33.129 326 162 11 6 305 262 557 1.27e-44 160
Msa1440840 MtrunA17_Chr5g0437831 31.231 333 188 9 8 326 75 380 1.87e-44 156
Msa1440840 MtrunA17_Chr4g0067601 30.240 334 194 8 8 326 260 569 2.45e-44 159
Msa1440840 MtrunA17_Chr2g0334111 29.688 320 183 6 5 313 25 313 3.70e-44 154
Msa1440840 MtrunA17_Chr2g0295541 28.962 366 188 9 8 326 252 592 4.35e-44 159
Msa1440840 MtrunA17_Chr5g0440871 31.447 318 176 7 6 317 39 320 8.14e-44 153
Msa1440840 MtrunA17_Chr4g0067611 31.208 298 170 4 6 291 258 532 9.12e-44 158
Msa1440840 MtrunA17_Chr4g0069891 31.111 315 181 7 6 306 285 577 1.76e-43 157
Msa1440840 MtrunA17_Chr1g0194081 31.090 312 182 7 8 307 257 547 3.26e-42 154
Msa1440840 MtrunA17_Chr3g0129921 30.696 316 179 5 12 306 251 547 8.43e-42 152
Msa1440840 MtrunA17_Chr7g0268241 30.539 334 185 11 6 327 50 348 9.58e-42 148
Msa1440840 MtrunA17_Chr7g0270651 29.341 334 196 8 8 325 261 570 3.79e-40 148
Msa1440840 MtrunA17_Chr7g0270631 29.630 324 191 7 8 315 249 551 2.95e-38 144
Msa1440840 MtrunA17_Chr7g0270631 28.221 326 191 6 8 311 797 1101 5.94e-35 135
Msa1440840 MtrunA17_Chr4g0025841 32.819 259 137 5 6 259 37 263 3.22e-38 137
Msa1440840 MtrunA17_Chr2g0301931 29.965 287 170 5 31 307 12 277 1.89e-37 135
Msa1440840 MtrunA17_Chr7g0270661 29.341 334 194 9 8 324 261 569 3.36e-37 140
Msa1440840 MtrunA17_Chr7g0270671 29.341 334 194 9 8 324 261 569 3.36e-37 140
Msa1440840 MtrunA17_Chr6g0459781 37.895 190 97 4 3 188 10 182 6.88e-37 131
Msa1440840 MtrunA17_Chr2g0314691 37.306 193 111 4 122 306 5 195 2.51e-36 130
Msa1440840 MtrunA17_Chr5g0440901 44.118 136 68 2 129 259 10 142 1.87e-34 123
Msa1440840 MtrunA17_Chr7g0265161 35.211 213 115 5 100 307 13 207 3.14e-33 122
Msa1440840 MtrunA17_Chr7g0271381 25.882 340 209 8 6 327 240 554 2.03e-29 118
Msa1440840 MtrunA17_Chr6g0460141 37.908 153 78 3 36 186 7 144 2.10e-26 102
Msa1440840 MtrunA17_Chr6g0459791 39.286 112 64 2 196 306 2 110 4.66e-20 84.3
Msa1440840 MtrunA17_Chr5g0440881 32.593 135 88 1 175 309 5 136 4.13e-18 80.1
Msa1440840 MtrunA17_Chr5g0437821 32.090 134 79 2 140 261 4 137 4.15e-18 79.7
Msa1440840 MtrunA17_Chr5g0440891 29.282 181 100 2 6 186 48 200 2.17e-17 79.3
Msa1440840 MtrunA17_Chr5g0444991 39.024 82 47 1 185 266 1 79 1.46e-14 68.2
Msa1440840 MtrunA17_Chr2g0299431 27.564 156 89 3 3 156 49 182 1.01e-11 64.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1440840 AT3G29090.1 73.994 323 73 1 5 327 6 317 0.0 508
Msa1440840 AT5G19730.1 44.551 312 147 5 4 307 83 376 8.50e-84 258
Msa1440840 AT2G36700.1 39.564 321 158 5 4 315 40 333 3.60e-71 224
Msa1440840 AT2G21610.1 37.143 315 162 6 5 315 50 332 9.37e-69 219
Msa1440840 AT2G21610.2 37.143 315 162 6 5 315 55 337 9.80e-69 219
Msa1440840 AT2G36710.1 38.580 324 160 6 4 315 89 385 1.23e-68 220
Msa1440840 AT5G47500.1 37.037 324 175 7 5 320 60 362 5.84e-67 214
Msa1440840 AT1G05310.1 36.991 319 162 4 6 309 91 385 5.96e-65 210
Msa1440840 AT5G07430.1 36.688 308 165 5 5 306 66 349 5.35e-63 204
Msa1440840 AT1G69940.1 34.936 312 171 5 2 306 63 349 2.12e-61 200
Msa1440840 AT5G61680.1 35.370 311 170 4 3 306 66 352 3.96e-61 199
Msa1440840 AT5G07410.1 35.256 312 170 5 2 306 63 349 4.25e-61 199
Msa1440840 AT3G17060.1 35.385 325 171 7 6 318 46 343 2.42e-60 197
Msa1440840 AT5G55590.1 37.821 312 164 6 5 306 81 372 3.56e-60 197
Msa1440840 AT5G07420.1 35.714 308 168 4 5 306 66 349 4.99e-60 196
Msa1440840 AT3G05620.1 37.134 307 162 5 8 307 243 525 3.35e-58 196
Msa1440840 AT4G00190.1 35.030 334 177 8 6 326 165 471 6.99e-58 194
Msa1440840 AT1G23200.1 37.061 313 161 7 6 307 251 538 9.52e-58 195
Msa1440840 AT3G05610.1 35.032 314 170 6 6 306 256 548 1.15e-57 197
Msa1440840 AT5G49180.1 36.190 315 166 7 6 306 260 553 1.17e-57 196
Msa1440840 AT1G11580.1 35.759 316 166 8 6 306 247 540 2.07e-57 194
Msa1440840 AT1G11580.2 35.759 316 166 8 6 306 268 561 3.41e-57 194
Msa1440840 AT3G06830.1 35.562 329 172 8 8 317 260 567 1.62e-56 192
Msa1440840 AT5G27870.1 33.121 314 176 4 6 306 253 545 2.11e-56 195
Msa1440840 AT4G03930.1 34.132 334 181 7 6 327 216 522 4.56e-56 190
Msa1440840 AT3G27980.1 33.533 334 183 7 6 327 189 495 1.62e-55 188
Msa1440840 AT1G11590.1 33.533 334 183 7 6 327 216 522 7.47e-55 187
Msa1440840 AT3G43270.1 36.422 313 164 6 8 306 217 508 2.09e-54 186
Msa1440840 AT3G14310.1 35.032 314 169 5 7 306 283 575 6.66e-54 186
Msa1440840 AT5G55590.2 37.868 272 139 6 5 266 81 332 2.52e-53 178
Msa1440840 AT1G53830.1 35.032 314 169 5 7 306 278 570 2.97e-53 184
Msa1440840 AT4G33230.1 34.906 318 170 8 7 309 298 593 3.27e-53 184
Msa1440840 AT2G45220.1 35.350 314 161 8 8 306 209 495 8.24e-52 179
Msa1440840 AT4G02330.1 32.075 318 179 6 5 306 258 554 1.66e-51 179
Msa1440840 AT5G04960.1 34.337 332 181 7 6 327 258 562 2.89e-51 178
Msa1440840 AT3G49220.1 34.700 317 169 7 6 306 285 579 4.48e-51 178
Msa1440840 AT3G24130.1 32.911 316 168 8 8 307 36 323 4.96e-51 172
Msa1440840 AT3G49220.3 34.700 317 169 7 6 306 330 624 7.15e-51 179
Msa1440840 AT4G15980.1 32.743 339 181 9 6 327 392 700 3.29e-50 177
Msa1440840 AT4G15980.2 32.743 339 181 9 6 327 402 710 4.48e-50 177
Msa1440840 AT3G10710.1 34.347 329 180 7 6 325 256 557 4.88e-50 175
Msa1440840 AT5G26810.1 34.259 324 179 11 6 317 34 335 1.15e-49 169
Msa1440840 AT3G62170.1 34.076 314 175 6 8 308 279 573 1.23e-49 174
Msa1440840 AT2G26450.1 32.615 325 178 9 7 316 303 601 1.24e-49 175
Msa1440840 AT5G53370.1 33.333 318 172 6 6 306 274 568 2.03e-49 174
Msa1440840 AT2G47550.1 33.435 329 179 7 5 317 245 549 2.11e-49 173
Msa1440840 AT1G11370.1 34.221 263 141 4 6 257 46 287 2.20e-49 167
Msa1440840 AT5G53370.2 33.333 318 172 6 6 306 310 604 3.08e-49 174
Msa1440840 AT5G18990.1 31.464 321 176 6 3 307 26 318 4.34e-49 167
Msa1440840 AT5G64640.1 34.251 327 172 7 6 309 289 595 5.38e-49 173
Msa1440840 AT1G02810.1 32.698 315 173 6 5 302 264 556 8.47e-49 172
Msa1440840 AT3G10720.2 33.851 322 171 8 13 317 310 606 8.74e-49 172
Msa1440840 AT2G47040.1 33.438 320 179 7 2 308 282 580 8.88e-49 172
Msa1440840 AT4G02300.1 34.069 317 172 6 6 307 222 516 8.99e-49 171
Msa1440840 AT1G53840.1 32.154 311 180 6 6 306 281 570 1.80e-48 171
Msa1440840 AT4G02320.1 31.642 335 188 6 6 326 208 515 1.89e-48 170
Msa1440840 AT5G04970.1 31.707 328 184 6 6 317 308 611 2.08e-48 171
Msa1440840 AT5G09760.1 32.099 324 180 4 6 309 241 544 2.21e-48 170
Msa1440840 AT2G43050.1 33.981 309 171 5 8 307 216 500 2.48e-48 169
Msa1440840 AT5G09760.2 32.099 324 180 4 6 309 267 570 3.65e-48 170
Msa1440840 AT3G59010.1 32.899 307 174 6 8 307 231 512 4.44e-48 169
Msa1440840 AT3G10720.1 37.872 235 130 4 96 317 19 250 7.81e-48 162
Msa1440840 AT2G47030.1 33.121 314 178 6 8 308 279 573 1.45e-47 169
Msa1440840 AT5G51490.1 34.169 319 171 7 6 306 222 519 1.70e-47 167
Msa1440840 AT3G47400.1 33.648 318 173 8 6 306 281 577 1.83e-47 169
Msa1440840 AT3G60730.1 33.528 343 182 11 2 327 204 517 5.93e-47 166
Msa1440840 AT2G26440.1 32.911 316 174 5 6 306 238 530 1.54e-46 165
Msa1440840 AT2G47280.1 31.707 328 179 7 4 317 33 329 1.57e-46 160
Msa1440840 AT4G33220.2 31.230 317 183 5 4 306 90 385 4.88e-46 161
Msa1440840 AT4G33220.1 31.429 315 181 5 6 306 213 506 5.16e-45 161
Msa1440840 AT3G14300.1 33.123 317 179 8 1 306 657 951 1.47e-44 163
Msa1440840 AT2G19150.1 31.818 330 180 7 6 322 41 338 2.88e-44 155
Msa1440840 AT5G51500.1 33.229 319 174 7 6 306 226 523 3.11e-44 159
Msa1440840 AT5G20860.2 29.560 318 183 7 6 307 230 522 4.92e-42 153
Msa1440840 AT2G19150.2 31.461 267 142 5 6 259 41 279 1.84e-34 127
Msa1440840 AT5G20860.1 32.243 214 124 4 96 288 260 473 6.69e-34 130
Msa1440840 AT1G44980.1 28.649 185 111 2 6 190 78 241 1.39e-19 86.7

Find 73 sgRNAs with CRISPR-Local

Find 184 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGCCTGCAGGTTGGAATAAT+TGG 0.137609 tig0029127:+24104 Msa1440840:CDS
ATAGATAAATTATAGATTAT+TGG 0.200490 tig0029127:-24683 None:intergenic
AGCAGAATATGGAATCTTTA+AGG 0.227555 tig0029127:-24476 None:intergenic
GGTCTTTGCATATACTTATA+TGG 0.284123 tig0029127:+24069 Msa1440840:CDS
GTGATAGGGAATGGGACTTT+TGG 0.298313 tig0029127:+22235 Msa1440840:CDS
GGAAGGCCATGGGGACCTTT+TGG 0.316288 tig0029127:+24040 Msa1440840:CDS
GTATTGACAGTGTCACAAAA+TGG 0.320111 tig0029127:+21707 Msa1440840:CDS
GACACACTTTATTTACATTC+TGG 0.338397 tig0029127:+22972 Msa1440840:CDS
CATATCCACTGCAAGTCTGC+TGG 0.341379 tig0029127:+23077 Msa1440840:CDS
GTCTCTCGAAACGAGTGAAA+TGG 0.350647 tig0029127:+24359 Msa1440840:CDS
TGGATGTGAATGTGATATAA+AGG 0.350699 tig0029127:+24528 Msa1440840:three_prime_UTR
TTTACAATTGCAGGTTCCTT+GGG 0.365614 tig0029127:+22852 Msa1440840:CDS
ATAGATAAATTATATATTAT+CGG 0.371077 tig0029127:-24655 None:intergenic
TTGCAGAGTTCTAAGGTGAT+AGG 0.379724 tig0029127:+22220 Msa1440840:intron
GCCTGCAGGTTGGAATAATT+GGG 0.385108 tig0029127:+24105 Msa1440840:CDS
GGAAGTTCATATACATATCT+TGG 0.394856 tig0029127:+24019 Msa1440840:CDS
GACGATCATAAGGATATCTC+TGG 0.408032 tig0029127:+21793 Msa1440840:CDS
TGGTAATAGCACTGCACTCT+TGG 0.413604 tig0029127:+23046 Msa1440840:CDS
TTGAGAGATTGTTATATTGA+AGG 0.415181 tig0029127:+23005 Msa1440840:CDS
GTTGTTGTTGCAGAGTTCTA+AGG 0.419372 tig0029127:+22213 Msa1440840:intron
ACACACGTCGGACGATCATA+AGG 0.423759 tig0029127:+21783 Msa1440840:CDS
TTCATAATGTTACTCATGCT+TGG 0.424047 tig0029127:-24600 None:intergenic
TTGCAGGTTCCTTGGGTGGC+AGG 0.427351 tig0029127:+22859 Msa1440840:CDS
GATTTGTGTTAGTGCTTCAT+AGG 0.430290 tig0029127:+22107 Msa1440840:intron
TTGCTACGTAAAGTGGTTGC+CGG 0.435259 tig0029127:-21823 None:intergenic
TTAGTCTTTGCTACGTAAAG+TGG 0.442440 tig0029127:-21830 None:intergenic
TCATAGGATTTCTTCGTTTG+AGG 0.445243 tig0029127:+22123 Msa1440840:CDS
TGGAAGTACGATTGTGGAAG+GGG 0.453802 tig0029127:+22261 Msa1440840:CDS
TGTGACACTGTCAATACAAA+AGG 0.455866 tig0029127:-21701 None:intergenic
GAAATGGGCTAGAGTGTTGA+AGG 0.456240 tig0029127:+24375 Msa1440840:CDS
ATTTCTTCGTTTGAGGAAGT+TGG 0.457253 tig0029127:+22130 Msa1440840:CDS
CCCCAATTATTCCAACCTGC+AGG 0.464703 tig0029127:-24106 None:intergenic
TCTCTCGAAACGAGTGAAAT+GGG 0.472247 tig0029127:+24360 Msa1440840:CDS
ACAGTGTCACAAAATGGAAC+AGG 0.476089 tig0029127:+21713 Msa1440840:CDS
CATGTGAGAATAGTATCTTC+AGG 0.482520 tig0029127:-21881 None:intergenic
AATTACAGGTGTTTCGGACC+AGG 0.485071 tig0029127:+24331 Msa1440840:intron
ATATCCACTGCAAGTCTGCT+GGG 0.487721 tig0029127:+23078 Msa1440840:CDS
GTGCTTGCTTCTATGAATAC+AGG 0.491355 tig0029127:+24149 Msa1440840:CDS
AGTTCTAAGGTGATAGGGAA+TGG 0.497376 tig0029127:+22226 Msa1440840:CDS
ACCTTGGCTTGCTCAAAGAA+TGG 0.514250 tig0029127:+24453 Msa1440840:CDS
TGCAGAGTTCTAAGGTGATA+GGG 0.520871 tig0029127:+22221 Msa1440840:intron
GGATGTGAATGTGATATAAA+GGG 0.523110 tig0029127:+24529 Msa1440840:three_prime_UTR
GTTGAAGGATAAAGAAGCTG+AGG 0.526749 tig0029127:+24390 Msa1440840:CDS
TACATATCTTGGAAGGCCAT+GGG 0.533342 tig0029127:+24030 Msa1440840:CDS
ACAATTGCAGGTTCCTTGGG+TGG 0.537665 tig0029127:+22855 Msa1440840:CDS
GTTCTAAGGTGATAGGGAAT+GGG 0.539964 tig0029127:+22227 Msa1440840:CDS
GCAAAGACCACTCTTCCAAA+AGG 0.544530 tig0029127:-24055 None:intergenic
TTGTTATATTGAAGGAAGTG+TGG 0.550354 tig0029127:+23013 Msa1440840:CDS
ATACATATCTTGGAAGGCCA+TGG 0.551565 tig0029127:+24029 Msa1440840:CDS
GGATATCTCTGGGAATCTAC+CGG 0.560072 tig0029127:+21804 Msa1440840:CDS
AGATGTGCTATCACAGGCAA+TGG 0.564500 tig0029127:+23995 Msa1440840:intron
GATCATTCTATAAAGCCTGC+AGG 0.564562 tig0029127:+24091 Msa1440840:CDS
TGTGGAAGTACGATTGTGGA+AGG 0.564913 tig0029127:+22259 Msa1440840:CDS
GCCATTCTTTGAGCAAGCCA+AGG 0.565342 tig0029127:-24454 None:intergenic
ATTACTATAAATGAGTACCT+TGG 0.566075 tig0029127:+24722 Msa1440840:three_prime_UTR
AAATCTCCACATGAAAAGAC+TGG 0.568295 tig0029127:+23122 Msa1440840:CDS
GTGGAAGTACGATTGTGGAA+GGG 0.576938 tig0029127:+22260 Msa1440840:CDS
ATTCTATAAAGCCTGCAGGT+TGG 0.577068 tig0029127:+24095 Msa1440840:CDS
GTTCATATACATATCTTGGA+AGG 0.578328 tig0029127:+24023 Msa1440840:CDS
GATTACAGATGTGCTATCAC+AGG 0.582789 tig0029127:+23989 Msa1440840:intron
TGTTAAGGACACTTGAAACA+TGG 0.586212 tig0029127:+24508 Msa1440840:three_prime_UTR
TGAACCCAGCAGACTTGCAG+TGG 0.598635 tig0029127:-23082 None:intergenic
TGTGCTATCACAGGCAATGG+AGG 0.600519 tig0029127:+23998 Msa1440840:CDS
ACTCTTCCAAAAGGTCCCCA+TGG 0.609898 tig0029127:-24046 None:intergenic
ACGATCATAAGGATATCTCT+GGG 0.614630 tig0029127:+21794 Msa1440840:CDS
CCTGCAGGTTGGAATAATTG+GGG 0.620195 tig0029127:+24106 Msa1440840:CDS
CTGAAGATACTATTCTCACA+TGG 0.629930 tig0029127:+21882 Msa1440840:CDS
TGGTTGTGGAAGTACGATTG+TGG 0.644197 tig0029127:+22255 Msa1440840:CDS
GTCCGACGTGTGTTTCTGAG+TGG 0.645729 tig0029127:-21773 None:intergenic
GTAAAGTTACCTGCCACCCA+AGG 0.645790 tig0029127:-22868 None:intergenic
ACATATCTTGGAAGGCCATG+GGG 0.667181 tig0029127:+24031 Msa1440840:CDS
CTGCAGGTTGGAATAATTGG+GGG 0.728016 tig0029127:+24107 Msa1440840:CDS
TGCCACTCAGAAACACACGT+CGG 0.821008 tig0029127:+21771 Msa1440840:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAATTTTTTGATGTTTTTAT+TGG + tig0029127:22167-22186 Msa1440840:intron 10.0%
!! ATAGATAAATTATAGATTAT+TGG - tig0029127:24686-24705 None:intergenic 10.0%
!! AAATTAAATTATTCATGTGT+TGG - tig0029127:22048-22067 None:intergenic 15.0%
!! AATCTACAATTATATATTCT+AGG + tig0029127:23907-23926 Msa1440840:intron 15.0%
!!! TTTTACATATAAAGTGTAAA+TGG + tig0029127:23956-23975 Msa1440840:intron 15.0%
!! TAACTATGTATAAAAATTAC+AGG + tig0029127:24317-24336 Msa1440840:intron 15.0%
!!! ATTAAAGCTTTTTAAGATTT+GGG - tig0029127:24571-24590 None:intergenic 15.0%
!!! TATTAAAGCTTTTTAAGATT+TGG - tig0029127:24572-24591 None:intergenic 15.0%
!! ACAACAAAAATTACAAGTAA+TGG + tig0029127:21676-21695 Msa1440840:exon 20.0%
!! GAAAAAAAAAAAAGAAGGAA+AGG - tig0029127:22776-22795 None:intergenic 20.0%
!!! TCCTTCTTTTTTTTTTTTCA+TGG + tig0029127:22777-22796 Msa1440840:intron 20.0%
!! TATAAAAATTACAGGTGTTT+CGG + tig0029127:24325-24344 Msa1440840:intron 20.0%
!!! CATAATTTTTAAGCAGAATA+TGG - tig0029127:24490-24509 None:intergenic 20.0%
!! TCTGCTTAAAAATTATGTTA+AGG + tig0029127:24493-24512 Msa1440840:exon 20.0%
!!! TAAGATTTGGGTTTTATTTT+AGG - tig0029127:24559-24578 None:intergenic 20.0%
!!! AAGAATTTCATCACTTTTGT+TGG + tig0029127:21851-21870 Msa1440840:CDS 25.0%
!!! TTGATGGTGATCAATTTTAT+TGG - tig0029127:21918-21937 None:intergenic 25.0%
!! TATATCATAGTGTTTTCTGA+TGG + tig0029127:22332-22351 Msa1440840:intron 25.0%
!! CACATTTTGTCACAATATAA+AGG - tig0029127:22368-22387 None:intergenic 25.0%
! CTTTATATTGTGACAAAATG+TGG + tig0029127:22366-22385 Msa1440840:intron 25.0%
! CTCAAAATCTTTGATATTGA+GGG + tig0029127:22420-22439 Msa1440840:intron 25.0%
! AAAAATCTGCATAATGCTTA+TGG - tig0029127:22712-22731 None:intergenic 25.0%
! GCCATGAAAAAAAAAAAAGA+AGG - tig0029127:22781-22800 None:intergenic 25.0%
!!! TCTTTTTTTTTTTTCATGGC+AGG + tig0029127:22781-22800 Msa1440840:intron 25.0%
!!! CTTTTTTTTTTTTCATGGCA+GGG + tig0029127:22782-22801 Msa1440840:intron 25.0%
! TCTCTTATGTATTTGTTCAT+AGG + tig0029127:22891-22910 Msa1440840:intron 25.0%
! TTGAGAGATTGTTATATTGA+AGG + tig0029127:23005-23024 Msa1440840:CDS 25.0%
! ACACTAAAAAAACATAGACA+CGG + tig0029127:23202-23221 Msa1440840:intron 25.0%
!! AAATGATTTTATAGATGTGC+CGG - tig0029127:23608-23627 None:intergenic 25.0%
! TTGATCTGAACAAATTATTG+AGG - tig0029127:23648-23667 None:intergenic 25.0%
! AAAAAAACGGAAAAAACATG+TGG + tig0029127:23756-23775 Msa1440840:intron 25.0%
!! ATTATATATTCTAGGCCTTT+TGG + tig0029127:23915-23934 Msa1440840:intron 25.0%
! TATAAAGTGTAAATGGTTTG+TGG + tig0029127:23963-23982 Msa1440840:intron 25.0%
AAATGCATGAACTTACTTGA+TGG - tig0029127:21934-21953 None:intergenic 30.0%
CAAACTATGAAATGTGTGTA+CGG + tig0029127:21985-22004 Msa1440840:intron 30.0%
!! TTTTGAGAATTTTTCTCCTG+AGG + tig0029127:22309-22328 Msa1440840:CDS 30.0%
AAAACACTATGATATACCTC+AGG - tig0029127:22328-22347 None:intergenic 30.0%
! CCTCAATATCAAAGATTTTG+AGG - tig0029127:22422-22441 None:intergenic 30.0%
CCTCAAAATCTTTGATATTG+AGG + tig0029127:22419-22438 Msa1440840:intron 30.0%
AGCTAATTAACTAACACCAT+AGG - tig0029127:22476-22495 None:intergenic 30.0%
CTTCTTTCTCATTGCTTTAT+TGG + tig0029127:22498-22517 Msa1440840:intron 30.0%
AAAATCTCGCACAAAATCAA+TGG - tig0029127:22527-22546 None:intergenic 30.0%
!!! TTTGTGCGAGATTTTAAGTT+TGG + tig0029127:22532-22551 Msa1440840:intron 30.0%
! CTGCATTTTCCATAATATCA+AGG - tig0029127:22575-22594 None:intergenic 30.0%
!! TTGATTTGCAGTCAAAATTG+TGG + tig0029127:22657-22676 Msa1440840:intron 30.0%
GAGATAGATACTACTTAATC+AGG - tig0029127:22690-22709 None:intergenic 30.0%
TTTGTTCATAGGTTAGATGT+TGG + tig0029127:22902-22921 Msa1440840:intron 30.0%
GTTGGAACAAGAATTTGAAA+AGG + tig0029127:22920-22939 Msa1440840:intron 30.0%
!! CTTTTTCTTGTTTATGATGC+AGG + tig0029127:22950-22969 Msa1440840:intron 30.0%
! GACACACTTTATTTACATTC+TGG + tig0029127:22972-22991 Msa1440840:CDS 30.0%
TTGTTATATTGAAGGAAGTG+TGG + tig0029127:23013-23032 Msa1440840:CDS 30.0%
!! AGACTGGTTATGTATTTTTG+AGG + tig0029127:23138-23157 Msa1440840:CDS 30.0%
ATATAACCACATGCATATAC+AGG + tig0029127:23292-23311 Msa1440840:intron 30.0%
TATAACCACATGCATATACA+GGG + tig0029127:23293-23312 Msa1440840:intron 30.0%
ACAAATAAGTGCAAACAATG+AGG - tig0029127:23478-23497 None:intergenic 30.0%
!! CAAAATTTGCTAAGTGGAAA+GGG - tig0029127:23531-23550 None:intergenic 30.0%
! CTTTCCACTTAGCAAATTTT+GGG + tig0029127:23530-23549 Msa1440840:intron 30.0%
GGCACATCTATAAAATCATT+TGG + tig0029127:23607-23626 Msa1440840:intron 30.0%
TTCAGATCAAAATGACTTTG+CGG + tig0029127:23658-23677 Msa1440840:intron 30.0%
CTATGATGTAATGAACCAAA+AGG - tig0029127:23933-23952 None:intergenic 30.0%
!!! CTTTTGGTTCATTACATCAT+AGG + tig0029127:23931-23950 Msa1440840:intron 30.0%
GGAAGTTCATATACATATCT+TGG + tig0029127:24019-24038 Msa1440840:CDS 30.0%
GTTCATATACATATCTTGGA+AGG + tig0029127:24023-24042 Msa1440840:CDS 30.0%
GGTCTTTGCATATACTTATA+TGG + tig0029127:24069-24088 Msa1440840:CDS 30.0%
GACACATGTAATACAAAGAT+AGG - tig0029127:24188-24207 None:intergenic 30.0%
AGCAGAATATGGAATCTTTA+AGG - tig0029127:24479-24498 None:intergenic 30.0%
TGGATGTGAATGTGATATAA+AGG + tig0029127:24528-24547 Msa1440840:three_prime_UTR 30.0%
GGATGTGAATGTGATATAAA+GGG + tig0029127:24529-24548 Msa1440840:three_prime_UTR 30.0%
TTCATAATGTTACTCATGCT+TGG - tig0029127:24603-24622 None:intergenic 30.0%
TGTGACACTGTCAATACAAA+AGG - tig0029127:21704-21723 None:intergenic 35.0%
! GTATTGACAGTGTCACAAAA+TGG + tig0029127:21707-21726 Msa1440840:CDS 35.0%
ACGATCATAAGGATATCTCT+GGG + tig0029127:21794-21813 Msa1440840:CDS 35.0%
! TTAGTCTTTGCTACGTAAAG+TGG - tig0029127:21833-21852 None:intergenic 35.0%
CATGTGAGAATAGTATCTTC+AGG - tig0029127:21884-21903 None:intergenic 35.0%
CTGAAGATACTATTCTCACA+TGG + tig0029127:21882-21901 Msa1440840:CDS 35.0%
GATTTGTGTTAGTGCTTCAT+AGG + tig0029127:22107-22126 Msa1440840:intron 35.0%
TCATAGGATTTCTTCGTTTG+AGG + tig0029127:22123-22142 Msa1440840:CDS 35.0%
ATTTCTTCGTTTGAGGAAGT+TGG + tig0029127:22130-22149 Msa1440840:CDS 35.0%
TGTCACGATCCTTGATATTA+TGG + tig0029127:22563-22582 Msa1440840:intron 35.0%
!!! TGCAGATTTTTTTGACACAC+AGG + tig0029127:22721-22740 Msa1440840:intron 35.0%
! GATGTGCATTTTACAATTGC+AGG + tig0029127:22843-22862 Msa1440840:CDS 35.0%
! TTTTACAATTGCAGGTTCCT+TGG + tig0029127:22851-22870 Msa1440840:CDS 35.0%
TTTACAATTGCAGGTTCCTT+GGG + tig0029127:22852-22871 Msa1440840:CDS 35.0%
AAATCTCCACATGAAAAGAC+TGG + tig0029127:23122-23141 Msa1440840:CDS 35.0%
! ACATAACCAGTCTTTTCATG+TGG - tig0029127:23131-23150 None:intergenic 35.0%
AAAAAACATAGACACGGACA+CGG + tig0029127:23208-23227 Msa1440840:intron 35.0%
CCAGTTTCTCAAACTATTAC+TGG - tig0029127:23262-23281 None:intergenic 35.0%
CCAGTAATAGTTTGAGAAAC+TGG + tig0029127:23259-23278 Msa1440840:intron 35.0%
ATAACCACATGCATATACAG+GGG + tig0029127:23294-23313 Msa1440840:intron 35.0%
TGATCTTTGTGCAAAACTTG+TGG - tig0029127:23503-23522 None:intergenic 35.0%
!! CCAAAATTTGCTAAGTGGAA+AGG - tig0029127:23532-23551 None:intergenic 35.0%
! CCTTTCCACTTAGCAAATTT+TGG + tig0029127:23529-23548 Msa1440840:intron 35.0%
TAACGCGAAATATATGCACA+GGG - tig0029127:23817-23836 None:intergenic 35.0%
TGTTAAGGACACTTGAAACA+TGG + tig0029127:24508-24527 Msa1440840:three_prime_UTR 35.0%
ACAGTGTCACAAAATGGAAC+AGG + tig0029127:21713-21732 Msa1440840:CDS 40.0%
GACGATCATAAGGATATCTC+TGG + tig0029127:21793-21812 Msa1440840:CDS 40.0%
!! TTCATGTGTTGGTGTTGTGT+TGG - tig0029127:22037-22056 None:intergenic 40.0%
! GTTGTTGTTGCAGAGTTCTA+AGG + tig0029127:22213-22232 Msa1440840:intron 40.0%
!! TTGCAGAGTTCTAAGGTGAT+AGG + tig0029127:22220-22239 Msa1440840:intron 40.0%
!! TGCAGAGTTCTAAGGTGATA+GGG + tig0029127:22221-22240 Msa1440840:intron 40.0%
!! AGTTCTAAGGTGATAGGGAA+TGG + tig0029127:22226-22245 Msa1440840:CDS 40.0%
!! GTTCTAAGGTGATAGGGAAT+GGG + tig0029127:22227-22246 Msa1440840:CDS 40.0%
CGGAGCACAATTTAAACCTA+TGG + tig0029127:22457-22476 Msa1440840:intron 40.0%
!!! TTTTTTTCATGGCAGGGTTC+AGG + tig0029127:22788-22807 Msa1440840:intron 40.0%
!!! TTTTTTCATGGCAGGGTTCA+GGG + tig0029127:22789-22808 Msa1440840:intron 40.0%
!! GGAAGTGTGGACTTCATTTT+TGG + tig0029127:23026-23045 Msa1440840:CDS 40.0%
ATCCAGACTTTAGGTAGATG+TGG + tig0029127:23320-23339 Msa1440840:intron 40.0%
!! CTGACCCAAAATTTGCTAAG+TGG - tig0029127:23537-23556 None:intergenic 40.0%
! TTTTATAGATGTGCCGGAAG+TGG - tig0029127:23602-23621 None:intergenic 40.0%
ATGACTTTGCGGAACTAAAG+AGG + tig0029127:23669-23688 Msa1440840:intron 40.0%
AACGCGAAATATATGCACAG+GGG - tig0029127:23816-23835 None:intergenic 40.0%
CTAACGCGAAATATATGCAC+AGG - tig0029127:23818-23837 None:intergenic 40.0%
TGTCAGACAGTGATACATGT+CGG + tig0029127:23838-23857 Msa1440840:intron 40.0%
GATTACAGATGTGCTATCAC+AGG + tig0029127:23989-24008 Msa1440840:intron 40.0%
ATACATATCTTGGAAGGCCA+TGG + tig0029127:24029-24048 Msa1440840:CDS 40.0%
TACATATCTTGGAAGGCCAT+GGG + tig0029127:24030-24049 Msa1440840:CDS 40.0%
GATCATTCTATAAAGCCTGC+AGG + tig0029127:24091-24110 Msa1440840:CDS 40.0%
ATTCTATAAAGCCTGCAGGT+TGG + tig0029127:24095-24114 Msa1440840:CDS 40.0%
GTGCTTGCTTCTATGAATAC+AGG + tig0029127:24149-24168 Msa1440840:CDS 40.0%
TCTCTCGAAACGAGTGAAAT+GGG + tig0029127:24360-24379 Msa1440840:CDS 40.0%
GTTGAAGGATAAAGAAGCTG+AGG + tig0029127:24390-24409 Msa1440840:CDS 40.0%
ATCCAGAACCACAAAAACCT+TGG + tig0029127:24437-24456 Msa1440840:CDS 40.0%
! GGATATCTCTGGGAATCTAC+CGG + tig0029127:21804-21823 Msa1440840:CDS 45.0%
TTGCTACGTAAAGTGGTTGC+CGG - tig0029127:21826-21845 None:intergenic 45.0%
!! TGTTGTGTTGGTGTCACACA+CGG - tig0029127:22025-22044 None:intergenic 45.0%
TCACACATCAAACACGACAC+TGG - tig0029127:22089-22108 None:intergenic 45.0%
! GTGATAGGGAATGGGACTTT+TGG + tig0029127:22235-22254 Msa1440840:CDS 45.0%
! TGGTTGTGGAAGTACGATTG+TGG + tig0029127:22255-22274 Msa1440840:CDS 45.0%
! TGTGGAAGTACGATTGTGGA+AGG + tig0029127:22259-22278 Msa1440840:CDS 45.0%
! GTGGAAGTACGATTGTGGAA+GGG + tig0029127:22260-22279 Msa1440840:CDS 45.0%
! TGGAAGTACGATTGTGGAAG+GGG + tig0029127:22261-22280 Msa1440840:CDS 45.0%
! TGAGGGTACAATTGTCGTTG+CGG + tig0029127:22437-22456 Msa1440840:intron 45.0%
CCACAATACGACTGCAATTG+AGG - tig0029127:22617-22636 None:intergenic 45.0%
CCTCAATTGCAGTCGTATTG+TGG + tig0029127:22614-22633 Msa1440840:intron 45.0%
TGCAGTCAAAATTGTGGTCG+CGG + tig0029127:22663-22682 Msa1440840:intron 45.0%
TGGTAATAGCACTGCACTCT+TGG + tig0029127:23046-23065 Msa1440840:CDS 45.0%
ATATCCACTGCAAGTCTGCT+GGG + tig0029127:23078-23097 Msa1440840:CDS 45.0%
! TGACCAAGTCTAGAGTCATC+TGG + tig0029127:23165-23184 Msa1440840:intron 45.0%
CAACCAGATGACTCTAGACT+TGG - tig0029127:23171-23190 None:intergenic 45.0%
CTCCACATCTACCTAAAGTC+TGG - tig0029127:23325-23344 None:intergenic 45.0%
CTTTGCGGAACTAAAGAGGA+AGG + tig0029127:23673-23692 Msa1440840:intron 45.0%
AGATGTGCTATCACAGGCAA+TGG + tig0029127:23995-24014 Msa1440840:intron 45.0%
ACATATCTTGGAAGGCCATG+GGG + tig0029127:24031-24050 Msa1440840:CDS 45.0%
GCAAAGACCACTCTTCCAAA+AGG - tig0029127:24058-24077 None:intergenic 45.0%
! AGCCTGCAGGTTGGAATAAT+TGG + tig0029127:24104-24123 Msa1440840:CDS 45.0%
! GCCTGCAGGTTGGAATAATT+GGG + tig0029127:24105-24124 Msa1440840:CDS 45.0%
! CCTGCAGGTTGGAATAATTG+GGG + tig0029127:24106-24125 Msa1440840:CDS 45.0%
! CTGCAGGTTGGAATAATTGG+GGG + tig0029127:24107-24126 Msa1440840:CDS 45.0%
AATTACAGGTGTTTCGGACC+AGG + tig0029127:24331-24350 Msa1440840:intron 45.0%
CGTTTCGAGAGACAAAAACC+TGG - tig0029127:24352-24371 None:intergenic 45.0%
GTCTCTCGAAACGAGTGAAA+TGG + tig0029127:24359-24378 Msa1440840:CDS 45.0%
!! GAAATGGGCTAGAGTGTTGA+AGG + tig0029127:24375-24394 Msa1440840:CDS 45.0%
! AGCCAAGGTTTTTGTGGTTC+TGG - tig0029127:24442-24461 None:intergenic 45.0%
! TGAGCAAGCCAAGGTTTTTG+TGG - tig0029127:24448-24467 None:intergenic 45.0%
!! ACCTTGGCTTGCTCAAAGAA+TGG + tig0029127:24453-24472 Msa1440840:CDS 45.0%
!! TTATAACAAAAAAAAAAAAA+CGG + tig0029127:23743-23762 Msa1440840:intron 5.0%
!! TTAAAATTAGATTTATATTT+AGG - tig0029127:24242-24261 None:intergenic 5.0%
!! ATAGATAAATTATATATTAT+CGG - tig0029127:24658-24677 None:intergenic 5.0%
TGCCACTCAGAAACACACGT+CGG + tig0029127:21771-21790 Msa1440840:CDS 50.0%
ACACACGTCGGACGATCATA+AGG + tig0029127:21783-21802 Msa1440840:CDS 50.0%
TGTCACACACGGTCACATGT+GGG - tig0029127:22014-22033 None:intergenic 50.0%
!! GGGAATGGGACTTTTGGTTG+TGG + tig0029127:22241-22260 Msa1440840:CDS 50.0%
GTGACAAAATGTGGCTGACG+CGG + tig0029127:22375-22394 Msa1440840:intron 50.0%
ACAATTGCAGGTTCCTTGGG+TGG + tig0029127:22855-22874 Msa1440840:CDS 50.0%
GTAAAGTTACCTGCCACCCA+AGG - tig0029127:22871-22890 None:intergenic 50.0%
CATATCCACTGCAAGTCTGC+TGG + tig0029127:23077-23096 Msa1440840:CDS 50.0%
TCTGCCCCTGTATATGCATG+TGG - tig0029127:23301-23320 None:intergenic 50.0%
TGTGGAGCTATAGCTCCACA+TGG + tig0029127:23774-23793 Msa1440840:intron 50.0%
GCGAAATATATGCACAGGGG+CGG - tig0029127:23813-23832 None:intergenic 50.0%
TGTGCTATCACAGGCAATGG+AGG + tig0029127:23998-24017 Msa1440840:CDS 50.0%
ACTCTTCCAAAAGGTCCCCA+TGG - tig0029127:24049-24068 None:intergenic 50.0%
!! ATGGGGACCTTTTGGAAGAG+TGG + tig0029127:24048-24067 Msa1440840:CDS 50.0%
CCCCAATTATTCCAACCTGC+AGG - tig0029127:24109-24128 None:intergenic 50.0%
GCCATTCTTTGAGCAAGCCA+AGG - tig0029127:24457-24476 None:intergenic 50.0%
! GTCCGACGTGTGTTTCTGAG+TGG - tig0029127:21776-21795 None:intergenic 55.0%
GTGTCACACACGGTCACATG+TGG - tig0029127:22015-22034 None:intergenic 55.0%
TGAACCCAGCAGACTTGCAG+TGG - tig0029127:23085-23104 None:intergenic 55.0%
CAGGGGCAGATCCAGACTTT+AGG + tig0029127:23311-23330 Msa1440840:intron 55.0%
TGAGTGCGTAACGCCACTTC+CGG + tig0029127:23586-23605 Msa1440840:intron 55.0%
AGCTCCACATGGCACCTAAG+TGG + tig0029127:23785-23804 Msa1440840:intron 55.0%
! GGATCCACTTAGGTGCCATG+TGG - tig0029127:23792-23811 None:intergenic 55.0%
TTGCAGGTTCCTTGGGTGGC+AGG + tig0029127:22859-22878 Msa1440840:CDS 60.0%
! GGAAGGCCATGGGGACCTTT+TGG + tig0029127:24040-24059 Msa1440840:CDS 60.0%
GCACAGGGGCGGATCCACTT+AGG - tig0029127:23802-23821 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
tig0029127 gene 21640 24744 21640 ID=Msa1440840;Name=Msa1440840
tig0029127 mRNA 21640 24744 21640 ID=Msa1440840-mRNA-1;Parent=Msa1440840;Name=Msa1440840-mRNA-1;_AED=0.25;_eAED=0.25;_QI=55|0.66|0.85|0.85|1|1|7|243|327
tig0029127 exon 21640 21937 21640 ID=Msa1440840-mRNA-1:exon:12455;Parent=Msa1440840-mRNA-1
tig0029127 exon 22119 22151 22119 ID=Msa1440840-mRNA-1:exon:12456;Parent=Msa1440840-mRNA-1
tig0029127 exon 22226 22330 22226 ID=Msa1440840-mRNA-1:exon:12457;Parent=Msa1440840-mRNA-1
tig0029127 exon 22803 22880 22803 ID=Msa1440840-mRNA-1:exon:12458;Parent=Msa1440840-mRNA-1
tig0029127 exon 22972 23159 22972 ID=Msa1440840-mRNA-1:exon:12459;Parent=Msa1440840-mRNA-1
tig0029127 exon 23997 24170 23997 ID=Msa1440840-mRNA-1:exon:12460;Parent=Msa1440840-mRNA-1
tig0029127 exon 24339 24744 24339 ID=Msa1440840-mRNA-1:exon:12461;Parent=Msa1440840-mRNA-1
tig0029127 five_prime_UTR 21640 21694 21640 ID=Msa1440840-mRNA-1:five_prime_utr;Parent=Msa1440840-mRNA-1
tig0029127 CDS 21695 21937 21695 ID=Msa1440840-mRNA-1:cds;Parent=Msa1440840-mRNA-1
tig0029127 CDS 22119 22151 22119 ID=Msa1440840-mRNA-1:cds;Parent=Msa1440840-mRNA-1
tig0029127 CDS 22226 22330 22226 ID=Msa1440840-mRNA-1:cds;Parent=Msa1440840-mRNA-1
tig0029127 CDS 22803 22880 22803 ID=Msa1440840-mRNA-1:cds;Parent=Msa1440840-mRNA-1
tig0029127 CDS 22972 23159 22972 ID=Msa1440840-mRNA-1:cds;Parent=Msa1440840-mRNA-1
tig0029127 CDS 23997 24170 23997 ID=Msa1440840-mRNA-1:cds;Parent=Msa1440840-mRNA-1
tig0029127 CDS 24339 24501 24339 ID=Msa1440840-mRNA-1:cds;Parent=Msa1440840-mRNA-1
tig0029127 three_prime_UTR 24502 24744 24502 ID=Msa1440840-mRNA-1:three_prime_utr;Parent=Msa1440840-mRNA-1
Gene Sequence

>Msa1440840

ATGGCACCTTTTGTATTGACAGTGTCACAAAATGGAACAGGAAACTACAGAACAGTACAAGAAGCTATTGATGCAGTGCCACTCAGAAACACACGTCGGACGATCATAAGGATATCTCTGGGAATCTACCGGCAACCACTTTACGTAGCAAAGACTAAGAATTTCATCACTTTTGTTGGTTTGTGTCCTGAAGATACTATTCTCACATGGAACAACACTGCCAATAAAATTGATCACCATCAATGCTTCATAGGATTTCTTCGTTTGAGGAAGTTGAGTTCTAAGGTGATAGGGAATGGGACTTTTGGTTGTGGAAGTACGATTGTGGAAGGGGAAGACTTTATTGCTGAGAATATTACTTTTGAGAATTTTTCTCCTGAGGGTTCAGGGCAAGCAGTAGCAGTTAGAGTAACAGCAGATAGATGTGCATTTTACAATTGCAGGTTCCTTGGGTGGCAGGACACACTTTATTTACATTCTGGCAAACAATATTTGAGAGATTGTTATATTGAAGGAAGTGTGGACTTCATTTTTGGTAATAGCACTGCACTCTTGGAACATTGTCATATCCACTGCAAGTCTGCTGGGTTCATAACTGCACAGAGCAGAAAATCTCCACATGAAAAGACTGGTTATGTATTTTTGAGATGTGCTATCACAGGCAATGGAGGAAGTTCATATACATATCTTGGAAGGCCATGGGGACCTTTTGGAAGAGTGGTCTTTGCATATACTTATATGGATCATTCTATAAAGCCTGCAGGTTGGAATAATTGGGGGAAAGTTGAAAATGAAAAAAGTGCTTGCTTCTATGAATACAGGTGTTTCGGACCAGGTTTTTGTCTCTCGAAACGAGTGAAATGGGCTAGAGTGTTGAAGGATAAAGAAGCTGAGGAGTTTCTCATGCATAGTTTCATTGATCCAGAACCACAAAAACCTTGGCTTGCTCAAAGAATGGCCTTAAAGATTCCATATTCTGCTTAA
Protein sequence

>Msa1440840

MAPFVLTVSQNGTGNYRTVQEAIDAVPLRNTRRTIIRISLGIYRQPLYVAKTKNFITFVGLCPEDTILTWNNTANKIDHHQCFIGFLRLRKLSSKVIGNGTFGCGSTIVEGEDFIAENITFENFSPEGSGQAVAVRVTADRCAFYNCRFLGWQDTLYLHSGKQYLRDCYIEGSVDFIFGNSTALLEHCHIHCKSAGFITAQSRKSPHEKTGYVFLRCAITGNGGSSYTYLGRPWGPFGRVVFAYTYMDHSIKPAGWNNWGKVENEKSACFYEYRCFGPGFCLSKRVKWARVLKDKEAEEFLMHSFIDPEPQKPWLAQRMALKIPYSA*