Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1443730 | sp|Q7XHI9|BH084_ARATH | 41.390 | 331 | 146 | 13 | 10 | 305 | 6 | 323 | 3.81e-60 | 198 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1443730 | G7K0X1 | 91.892 | 333 | 18 | 3 | 1 | 326 | 1 | 331 | 0.0 | 619 |
Gene ID | Type | Classification |
---|---|---|
Msa1443730 | TF | bHLH |
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0581000 | Msa1443730 | 0.850589 | 1.540242e-60 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1443730 | MtrunA17_Chr5g0393721 | 91.892 | 333 | 18 | 3 | 1 | 326 | 1 | 331 | 0.0 | 619 |
Msa1443730 | MtrunA17_Chr1g0207301 | 48.980 | 343 | 126 | 12 | 1 | 309 | 51 | 378 | 1.21e-82 | 255 |
Msa1443730 | MtrunA17_Chr1g0207311 | 48.243 | 313 | 130 | 8 | 1 | 308 | 1 | 286 | 5.97e-78 | 239 |
Msa1443730 | MtrunA17_Chr3g0134741 | 50.909 | 220 | 92 | 7 | 93 | 307 | 111 | 319 | 2.05e-56 | 185 |
Msa1443730 | MtrunA17_Chr1g0152651 | 58.491 | 159 | 53 | 4 | 139 | 294 | 201 | 349 | 2.08e-44 | 155 |
Msa1443730 | MtrunA17_Chr5g0435021 | 62.500 | 72 | 27 | 0 | 216 | 287 | 215 | 286 | 1.01e-25 | 104 |
Msa1443730 | MtrunA17_Chr4g0074161 | 60.000 | 65 | 26 | 0 | 218 | 282 | 205 | 269 | 9.55e-19 | 86.3 |
Msa1443730 | MtrunA17_Chr8g0384141 | 66.071 | 56 | 19 | 0 | 228 | 283 | 123 | 178 | 1.33e-18 | 84.0 |
Msa1443730 | MtrunA17_Chr3g0134001 | 61.111 | 54 | 21 | 0 | 228 | 281 | 180 | 233 | 7.19e-17 | 79.3 |
Msa1443730 | MtrunA17_Chr7g0243041 | 60.000 | 55 | 22 | 0 | 226 | 280 | 33 | 87 | 8.20e-17 | 76.6 |
Msa1443730 | MtrunA17_Chr1g0190731 | 58.462 | 65 | 27 | 0 | 218 | 282 | 192 | 256 | 8.65e-17 | 80.1 |
Msa1443730 | MtrunA17_Chr1g0153241 | 39.604 | 101 | 54 | 1 | 203 | 296 | 62 | 162 | 1.25e-15 | 75.9 |
Msa1443730 | MtrunA17_Chr3g0095391 | 45.570 | 79 | 36 | 2 | 212 | 290 | 304 | 375 | 6.23e-14 | 72.4 |
Msa1443730 | MtrunA17_Chr1g0193321 | 46.970 | 66 | 35 | 0 | 217 | 282 | 460 | 525 | 1.02e-13 | 72.0 |
Msa1443730 | MtrunA17_Chr6g0484271 | 43.529 | 85 | 47 | 1 | 199 | 282 | 135 | 219 | 4.22e-13 | 68.6 |
Msa1443730 | MtrunA17_Chr5g0402031 | 43.939 | 66 | 37 | 0 | 230 | 295 | 116 | 181 | 5.90e-13 | 68.9 |
Msa1443730 | MtrunA17_Chr4g0014771 | 54.545 | 66 | 29 | 1 | 218 | 282 | 117 | 182 | 1.34e-12 | 65.9 |
Msa1443730 | MtrunA17_Chr1g0182791 | 45.455 | 66 | 36 | 0 | 217 | 282 | 315 | 380 | 1.73e-12 | 68.2 |
Msa1443730 | MtrunA17_Chr5g0421111 | 33.951 | 162 | 87 | 4 | 129 | 282 | 280 | 429 | 2.99e-12 | 67.4 |
Msa1443730 | MtrunA17_Chr7g0234761 | 51.562 | 64 | 30 | 1 | 220 | 282 | 318 | 381 | 8.78e-12 | 65.9 |
Msa1443730 | MtrunA17_Chr8g0363921 | 50.000 | 64 | 31 | 1 | 220 | 282 | 152 | 215 | 1.06e-11 | 64.3 |
Msa1443730 | MtrunA17_Chr8g0339091 | 51.562 | 64 | 30 | 1 | 220 | 282 | 292 | 355 | 1.11e-11 | 65.5 |
Msa1443730 | MtrunA17_Chr7g0231461 | 36.207 | 116 | 69 | 3 | 167 | 281 | 248 | 359 | 1.87e-11 | 64.7 |
Msa1443730 | MtrunA17_Chr4g0035101 | 32.520 | 123 | 65 | 2 | 178 | 282 | 85 | 207 | 2.03e-11 | 64.3 |
Msa1443730 | MtrunA17_Chr3g0144641 | 42.708 | 96 | 46 | 3 | 188 | 282 | 168 | 255 | 2.06e-11 | 64.3 |
Msa1443730 | MtrunA17_Chr8g0365941 | 42.553 | 94 | 35 | 2 | 208 | 282 | 276 | 369 | 2.22e-11 | 64.7 |
Msa1443730 | MtrunA17_Chr8g0351881 | 48.485 | 66 | 33 | 1 | 218 | 282 | 315 | 380 | 2.27e-11 | 64.3 |
Msa1443730 | MtrunA17_Chr1g0213791 | 50.000 | 68 | 33 | 1 | 218 | 284 | 264 | 331 | 6.79e-11 | 62.8 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1443730 | AT2G14760.1 | 41.390 | 331 | 146 | 13 | 10 | 305 | 6 | 323 | 3.87e-61 | 198 |
Msa1443730 | AT4G33880.1 | 39.828 | 349 | 147 | 11 | 10 | 301 | 6 | 348 | 1.53e-58 | 192 |
Msa1443730 | AT2G14760.3 | 40.580 | 345 | 142 | 15 | 10 | 305 | 6 | 336 | 1.93e-57 | 189 |
Msa1443730 | AT1G27740.1 | 67.544 | 114 | 36 | 1 | 190 | 302 | 137 | 250 | 1.71e-47 | 160 |
Msa1443730 | AT5G43175.1 | 54.140 | 157 | 53 | 5 | 155 | 302 | 69 | 215 | 8.51e-45 | 152 |
Msa1443730 | AT5G37800.1 | 70.000 | 60 | 18 | 0 | 228 | 287 | 210 | 269 | 2.54e-24 | 100 |
Msa1443730 | AT1G66470.1 | 71.667 | 60 | 17 | 0 | 228 | 287 | 204 | 263 | 2.60e-24 | 100 |
Msa1443730 | AT2G24260.2 | 63.077 | 65 | 24 | 0 | 218 | 282 | 34 | 98 | 3.70e-21 | 91.3 |
Msa1443730 | AT2G24260.1 | 63.077 | 65 | 24 | 0 | 218 | 282 | 137 | 201 | 2.43e-20 | 90.5 |
Msa1443730 | AT4G30980.1 | 63.077 | 65 | 24 | 0 | 218 | 282 | 129 | 193 | 2.70e-20 | 90.1 |
Msa1443730 | AT4G30980.2 | 63.077 | 65 | 24 | 0 | 218 | 282 | 177 | 241 | 4.88e-20 | 89.7 |
Msa1443730 | AT5G58010.1 | 58.462 | 65 | 27 | 0 | 218 | 282 | 98 | 162 | 2.08e-18 | 84.3 |
Msa1443730 | AT5G01305.1 | 57.377 | 61 | 26 | 0 | 218 | 278 | 36 | 96 | 1.98e-17 | 79.0 |
Msa1443730 | AT3G21330.1 | 57.143 | 56 | 24 | 0 | 226 | 281 | 276 | 331 | 4.77e-16 | 78.6 |
Msa1443730 | AT4G00120.1 | 51.852 | 54 | 26 | 0 | 228 | 281 | 121 | 174 | 3.39e-15 | 73.6 |
Msa1443730 | AT2G46970.2 | 32.520 | 123 | 67 | 4 | 202 | 308 | 166 | 288 | 2.05e-13 | 70.9 |
Msa1443730 | AT2G46970.3 | 32.520 | 123 | 67 | 4 | 202 | 308 | 175 | 297 | 2.67e-13 | 70.5 |
Msa1443730 | AT2G46970.1 | 32.520 | 123 | 67 | 4 | 202 | 308 | 197 | 319 | 2.74e-13 | 70.5 |
Msa1443730 | AT2G20180.7 | 45.679 | 81 | 43 | 1 | 202 | 282 | 191 | 270 | 5.17e-13 | 69.7 |
Msa1443730 | AT2G20180.1 | 45.679 | 81 | 43 | 1 | 202 | 282 | 191 | 270 | 5.17e-13 | 69.7 |
Msa1443730 | AT2G20180.5 | 45.679 | 81 | 43 | 1 | 202 | 282 | 191 | 270 | 5.17e-13 | 69.7 |
Msa1443730 | AT2G20180.4 | 45.679 | 81 | 43 | 1 | 202 | 282 | 262 | 341 | 5.72e-13 | 69.7 |
Msa1443730 | AT2G20180.6 | 45.679 | 81 | 43 | 1 | 202 | 282 | 262 | 341 | 5.72e-13 | 69.7 |
Msa1443730 | AT2G20180.2 | 45.679 | 81 | 43 | 1 | 202 | 282 | 262 | 341 | 5.72e-13 | 69.7 |
Msa1443730 | AT2G20180.3 | 45.679 | 81 | 43 | 1 | 202 | 282 | 262 | 341 | 5.72e-13 | 69.7 |
Msa1443730 | AT1G09530.3 | 41.463 | 82 | 44 | 1 | 214 | 291 | 328 | 409 | 6.97e-13 | 69.7 |
Msa1443730 | AT1G09530.2 | 41.463 | 82 | 44 | 1 | 214 | 291 | 328 | 409 | 6.97e-13 | 69.7 |
Msa1443730 | AT1G09530.5 | 41.463 | 82 | 44 | 1 | 214 | 291 | 328 | 409 | 6.97e-13 | 69.7 |
Msa1443730 | AT1G09530.1 | 41.463 | 82 | 44 | 1 | 214 | 291 | 328 | 409 | 6.97e-13 | 69.7 |
Msa1443730 | AT1G09530.4 | 41.463 | 82 | 44 | 1 | 214 | 291 | 328 | 409 | 6.97e-13 | 69.7 |
Msa1443730 | AT1G09530.6 | 41.463 | 82 | 44 | 1 | 214 | 291 | 328 | 409 | 6.97e-13 | 69.7 |
Msa1443730 | AT5G50915.1 | 46.753 | 77 | 39 | 2 | 220 | 295 | 137 | 212 | 1.78e-12 | 67.4 |
Msa1443730 | AT5G50915.2 | 46.753 | 77 | 39 | 2 | 220 | 295 | 137 | 212 | 1.78e-12 | 67.4 |
Msa1443730 | AT5G50915.3 | 46.753 | 77 | 39 | 2 | 220 | 295 | 137 | 212 | 1.87e-12 | 67.0 |
Msa1443730 | AT5G50915.4 | 46.753 | 77 | 39 | 2 | 220 | 295 | 137 | 212 | 1.87e-12 | 67.0 |
Msa1443730 | AT2G20180.8 | 45.570 | 79 | 42 | 1 | 202 | 280 | 262 | 339 | 1.99e-12 | 67.8 |
Msa1443730 | AT4G36930.1 | 38.889 | 90 | 53 | 2 | 226 | 313 | 198 | 287 | 2.02e-12 | 67.8 |
Msa1443730 | AT4G00050.2 | 37.607 | 117 | 56 | 4 | 174 | 286 | 69 | 172 | 3.92e-12 | 66.2 |
Msa1443730 | AT1G73830.2 | 36.806 | 144 | 74 | 6 | 148 | 282 | 76 | 211 | 4.75e-12 | 65.5 |
Msa1443730 | AT1G59640.1 | 43.478 | 92 | 44 | 3 | 220 | 310 | 137 | 221 | 5.20e-12 | 65.5 |
Msa1443730 | AT1G73830.1 | 36.806 | 144 | 74 | 6 | 148 | 282 | 76 | 211 | 5.33e-12 | 65.5 |
Msa1443730 | AT1G25330.1 | 53.125 | 64 | 29 | 1 | 220 | 282 | 105 | 168 | 5.66e-12 | 64.7 |
Msa1443730 | AT4G00050.3 | 37.607 | 117 | 56 | 4 | 174 | 286 | 171 | 274 | 6.76e-12 | 66.2 |
Msa1443730 | AT4G00050.1 | 37.607 | 117 | 56 | 4 | 174 | 286 | 171 | 274 | 7.09e-12 | 66.2 |
Msa1443730 | AT4G09180.1 | 50.000 | 68 | 33 | 1 | 218 | 284 | 183 | 250 | 9.98e-12 | 64.7 |
Msa1443730 | AT1G35460.1 | 51.515 | 66 | 31 | 1 | 218 | 282 | 180 | 245 | 1.51e-11 | 64.3 |
Msa1443730 | AT1G59640.2 | 43.011 | 93 | 45 | 3 | 220 | 311 | 137 | 222 | 1.56e-11 | 65.1 |
Msa1443730 | AT3G07340.1 | 51.562 | 64 | 30 | 1 | 220 | 282 | 259 | 322 | 1.72e-11 | 65.1 |
Msa1443730 | AT3G07340.2 | 51.562 | 64 | 30 | 1 | 220 | 282 | 259 | 322 | 2.05e-11 | 65.1 |
Msa1443730 | AT5G48560.1 | 51.562 | 64 | 30 | 1 | 220 | 282 | 302 | 365 | 2.29e-11 | 65.1 |
Msa1443730 | AT5G48560.2 | 51.562 | 64 | 30 | 1 | 220 | 282 | 302 | 365 | 2.37e-11 | 64.7 |
Msa1443730 | AT1G51140.1 | 50.769 | 65 | 31 | 1 | 218 | 281 | 303 | 367 | 2.40e-11 | 64.7 |
Msa1443730 | AT1G26260.3 | 51.562 | 64 | 30 | 1 | 220 | 282 | 173 | 236 | 2.63e-11 | 64.3 |
Msa1443730 | AT1G26260.5 | 51.562 | 64 | 30 | 1 | 220 | 282 | 202 | 265 | 3.01e-11 | 64.3 |
Msa1443730 | AT1G26260.4 | 51.562 | 64 | 30 | 1 | 220 | 282 | 224 | 287 | 3.15e-11 | 64.3 |
Msa1443730 | AT1G26260.1 | 51.562 | 64 | 30 | 1 | 220 | 282 | 224 | 287 | 3.15e-11 | 64.3 |
Msa1443730 | AT1G26260.6 | 51.562 | 64 | 30 | 1 | 220 | 282 | 224 | 287 | 3.15e-11 | 64.3 |
Msa1443730 | AT1G26260.2 | 51.562 | 64 | 30 | 1 | 220 | 282 | 224 | 287 | 3.15e-11 | 64.3 |
Msa1443730 | AT4G34530.1 | 50.000 | 64 | 31 | 1 | 220 | 282 | 173 | 236 | 4.37e-11 | 63.5 |
Msa1443730 | AT4G28790.1 | 39.326 | 89 | 53 | 1 | 208 | 296 | 260 | 347 | 4.83e-11 | 63.9 |
Msa1443730 | AT5G67110.1 | 50.980 | 51 | 25 | 0 | 232 | 282 | 100 | 150 | 4.96e-11 | 62.0 |
Msa1443730 | AT1G68920.3 | 50.000 | 64 | 31 | 1 | 220 | 282 | 303 | 366 | 9.95e-11 | 63.2 |
Find 62 sgRNAs with CRISPR-Local
Find 234 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TTGACATTCCTCTTGTTCTT+TGG | 0.181067 | tig0030514:-25246 | None:intergenic |
CAGCTTTGACTATATTTCTA+TGG | 0.187224 | tig0030514:+24885 | Msa1443730:CDS |
TGACATTCCTCTTGTTCTTT+GGG | 0.254260 | tig0030514:-25245 | None:intergenic |
TGTTGTACATGGAGTGAATT+TGG | 0.258460 | tig0030514:-24926 | None:intergenic |
ATTTAGCCGTAGAATCATTC+TGG | 0.309924 | tig0030514:-25416 | None:intergenic |
ATATAGTCAAAGCTGGTTAC+TGG | 0.320414 | tig0030514:-24877 | None:intergenic |
AGTTTCAGTACCCAACAAAT+TGG | 0.360695 | tig0030514:-24770 | None:intergenic |
AGTGAATTTGGAATGATCTA+TGG | 0.365652 | tig0030514:-24914 | None:intergenic |
ACCACAAGCGCAGAAAATTC+AGG | 0.383330 | tig0030514:+25039 | Msa1443730:CDS |
TATCAAAATTCCAATTTGTT+GGG | 0.383401 | tig0030514:+24760 | Msa1443730:CDS |
GAAAGTTACCTTAGTTCCAT+TGG | 0.390559 | tig0030514:-25902 | None:intergenic |
AAAGTTACCTTAGTTCCATT+GGG | 0.395654 | tig0030514:-25901 | None:intergenic |
CTATCAAAATTCCAATTTGT+TGG | 0.398328 | tig0030514:+24759 | Msa1443730:CDS |
CTGAGCTTATTTCTCAAGAA+TGG | 0.409782 | tig0030514:+24650 | Msa1443730:CDS |
GACTTTATGAACCAGTTACT+TGG | 0.418424 | tig0030514:+24709 | Msa1443730:CDS |
ACGTAGCTCATGAGAAGAAT+TGG | 0.419048 | tig0030514:-25370 | None:intergenic |
TTCATTCCATTGTAAGCAAT+GGG | 0.427456 | tig0030514:-26211 | None:intergenic |
ATGAGGAGTTACCAAGTAAC+TGG | 0.430149 | tig0030514:-24720 | None:intergenic |
TGGGTACTGAAACTGCATTT+TGG | 0.433806 | tig0030514:+24779 | Msa1443730:CDS |
GAATACAAGTCCTGGTTCTC+AGG | 0.435078 | tig0030514:+25311 | Msa1443730:CDS |
GATTCTACGGCTAAATTAAG+TGG | 0.448568 | tig0030514:+25423 | Msa1443730:CDS |
CCTTAGTTCCATTGGGGACA+AGG | 0.451533 | tig0030514:-25894 | None:intergenic |
CCTTGTCCCCAATGGAACTA+AGG | 0.456805 | tig0030514:+25894 | Msa1443730:CDS |
GTTCATTCCATTGTAAGCAA+TGG | 0.476694 | tig0030514:-26212 | None:intergenic |
AGCTTTGACTATATTTCTAT+GGG | 0.482058 | tig0030514:+24886 | Msa1443730:CDS |
TCATCAGATTGTGTTGTACA+TGG | 0.498142 | tig0030514:-24937 | None:intergenic |
ATGAACATTGGACTTGAACT+TGG | 0.504815 | tig0030514:+26229 | Msa1443730:CDS |
ACAAGAGGAATGTCAAATGT+AGG | 0.531678 | tig0030514:+25253 | Msa1443730:CDS |
CATAGAAATATAGTCAAAGC+TGG | 0.533612 | tig0030514:-24884 | None:intergenic |
GCTTACAATGGAATGAACAT+TGG | 0.534664 | tig0030514:+26217 | Msa1443730:CDS |
AGGCTCTGTGGATCAGTAGC+AGG | 0.543740 | tig0030514:-25468 | None:intergenic |
TTCTCATGAGCTACGTGGAA+GGG | 0.546048 | tig0030514:+25377 | Msa1443730:CDS |
TCTTGAGAAATAAGCTCAGT+AGG | 0.547757 | tig0030514:-24646 | None:intergenic |
GAAGAGAAAGAATAAATGAA+AGG | 0.551355 | tig0030514:+25854 | Msa1443730:CDS |
TACTCTCCCATTGCTTACAA+TGG | 0.559351 | tig0030514:+26205 | Msa1443730:CDS |
TTTGAGCCAGAATGATTCTA+CGG | 0.561478 | tig0030514:+25410 | Msa1443730:CDS |
CTACAAAACCTTGTCCCCAA+TGG | 0.563548 | tig0030514:+25886 | Msa1443730:CDS |
GCAACTAGTATCAGAAGTTG+AGG | 0.564399 | tig0030514:-24842 | None:intergenic |
ACTAGTTTCTGAACCAGAAG+AGG | 0.570837 | tig0030514:+25011 | Msa1443730:CDS |
TATAGGTCCCAAAGAACAAG+AGG | 0.573850 | tig0030514:+25238 | Msa1443730:intron |
ACTGAAGAGAATACAAGTCC+TGG | 0.575082 | tig0030514:+25303 | Msa1443730:CDS |
AACGTCTGATCCTGAGAACC+AGG | 0.576280 | tig0030514:-25321 | None:intergenic |
CTTCTCATGAGCTACGTGGA+AGG | 0.576985 | tig0030514:+25376 | Msa1443730:CDS |
AAGATCTAGGAGCTCAAATG+AGG | 0.582801 | tig0030514:+25065 | Msa1443730:CDS |
TCTCAGGATCAGACGTTAAG+CGG | 0.590949 | tig0030514:+25327 | Msa1443730:CDS |
GGATATCAGCACCATGCTTG+AGG | 0.592275 | tig0030514:+26019 | Msa1443730:CDS |
GAAATGTTGTGATGAGAATG+AGG | 0.597945 | tig0030514:-24737 | None:intergenic |
CTAGTATCAGAAGTTGAGGT+AGG | 0.600931 | tig0030514:-24838 | None:intergenic |
AACTTGTGCAGTAACAATTG+TGG | 0.601327 | tig0030514:-24815 | None:intergenic |
GTTAAGCGGTTATTGTTCAG+AGG | 0.601995 | tig0030514:+25341 | Msa1443730:CDS |
TTGGACAGCTTCCTCAAGCA+TGG | 0.610000 | tig0030514:-26030 | None:intergenic |
TACCCCAACAAAAGAAACAA+AGG | 0.623892 | tig0030514:+26255 | Msa1443730:CDS |
AAAGACTTACTCTTGCATAG+AGG | 0.624768 | tig0030514:-25488 | None:intergenic |
AAGTTACCTTAGTTCCATTG+GGG | 0.630156 | tig0030514:-25900 | None:intergenic |
TTCTAAGCTCTGATGACATG+TGG | 0.645185 | tig0030514:+26179 | Msa1443730:CDS |
GGAAAATCAAGATCTAGTAG+AGG | 0.649455 | tig0030514:+25444 | Msa1443730:CDS |
CAGTGGACTCTACACTGCTG+AGG | 0.657902 | tig0030514:+24681 | Msa1443730:CDS |
ACTCTTGCATAGAGGCTCTG+TGG | 0.664485 | tig0030514:-25480 | None:intergenic |
CAAGAATGGACTTCTCTCAG+TGG | 0.692150 | tig0030514:+24664 | Msa1443730:CDS |
AATTCTTCTCATGAGCTACG+TGG | 0.695539 | tig0030514:+25372 | Msa1443730:CDS |
GTAACAATTGTGGAATCATG+TGG | 0.707912 | tig0030514:-24805 | None:intergenic |
ACAATTGTGGAATCATGTGG+TGG | 0.728994 | tig0030514:-24802 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TATCAAAATTCCAATTTGTT+GGG | + | tig0030514:24760-24779 | Msa1443730:CDS | 20.0% |
!! | CATTTAGAAGATTAATTCAT+GGG | - | tig0030514:25105-25124 | None:intergenic | 20.0% |
!! | ACATTTAGAAGATTAATTCA+TGG | - | tig0030514:25106-25125 | None:intergenic | 20.0% |
!! | GAAATAAAAAACAGTAGTAA+GGG | - | tig0030514:25131-25150 | None:intergenic | 20.0% |
!! | AGAAATAAAAAACAGTAGTA+AGG | - | tig0030514:25132-25151 | None:intergenic | 20.0% |
!! | TCGATATACAAACATTAAAT+AGG | - | tig0030514:25563-25582 | None:intergenic | 20.0% |
!!! | TTTGAAATTAGAAAACTAGA+AGG | - | tig0030514:25592-25611 | None:intergenic | 20.0% |
!!! | TCTTTTCTATACAATACAAA+AGG | - | tig0030514:25836-25855 | None:intergenic | 20.0% |
!! | ACTATATATTGAACAACAAT+TGG | + | tig0030514:25948-25967 | Msa1443730:intron | 20.0% |
!!! | GTTTTTACAACTTCAAATTA+AGG | + | tig0030514:26061-26080 | Msa1443730:CDS | 20.0% |
!!! | TATCAAAATTCCAATTTGTT+GGG | + | tig0030514:24760-24779 | Msa1443730:CDS | 20.0% |
!! | CATTTAGAAGATTAATTCAT+GGG | - | tig0030514:25105-25124 | None:intergenic | 20.0% |
!! | ACATTTAGAAGATTAATTCA+TGG | - | tig0030514:25106-25125 | None:intergenic | 20.0% |
!! | GAAATAAAAAACAGTAGTAA+GGG | - | tig0030514:25131-25150 | None:intergenic | 20.0% |
!! | AGAAATAAAAAACAGTAGTA+AGG | - | tig0030514:25132-25151 | None:intergenic | 20.0% |
!! | TCGATATACAAACATTAAAT+AGG | - | tig0030514:25563-25582 | None:intergenic | 20.0% |
!!! | TTTGAAATTAGAAAACTAGA+AGG | - | tig0030514:25592-25611 | None:intergenic | 20.0% |
!!! | TCTTTTCTATACAATACAAA+AGG | - | tig0030514:25836-25855 | None:intergenic | 20.0% |
!! | ACTATATATTGAACAACAAT+TGG | + | tig0030514:25948-25967 | Msa1443730:intron | 20.0% |
!!! | GTTTTTACAACTTCAAATTA+AGG | + | tig0030514:26061-26080 | Msa1443730:CDS | 20.0% |
! | CTATCAAAATTCCAATTTGT+TGG | + | tig0030514:24759-24778 | Msa1443730:CDS | 25.0% |
!! | AGCTTTGACTATATTTCTAT+GGG | + | tig0030514:24886-24905 | Msa1443730:CDS | 25.0% |
! | AAAATTCAGGAAAAAGATCT+AGG | + | tig0030514:25052-25071 | Msa1443730:CDS | 25.0% |
! | ACCTATAAAATCAAATGACA+CGG | - | tig0030514:25225-25244 | None:intergenic | 25.0% |
!! | TGCATATCTTTTATGACTTA+CGG | - | tig0030514:25648-25667 | None:intergenic | 25.0% |
!!! | ATGTTAATTGTTAAGTTGGT+AGG | + | tig0030514:25722-25741 | Msa1443730:intron | 25.0% |
! | GTGCTTATTCATAATGTATT+TGG | + | tig0030514:25754-25773 | Msa1443730:intron | 25.0% |
! | ATACAATACAAAAGGAAACA+TGG | - | tig0030514:25828-25847 | None:intergenic | 25.0% |
! | GAAGAGAAAGAATAAATGAA+AGG | + | tig0030514:25854-25873 | Msa1443730:CDS | 25.0% |
! | TGTTCAATATATAGTCTGAA+TGG | - | tig0030514:25943-25962 | None:intergenic | 25.0% |
! | GTTGTAAAAACTTCACATAT+TGG | - | tig0030514:26052-26071 | None:intergenic | 25.0% |
! | GTTCCATTCAAATTCATATA+GGG | - | tig0030514:26156-26175 | None:intergenic | 25.0% |
! | TGTTCCATTCAAATTCATAT+AGG | - | tig0030514:26157-26176 | None:intergenic | 25.0% |
!!! | TATCCTTTGTTTCTTTTGTT+GGG | - | tig0030514:26261-26280 | None:intergenic | 25.0% |
!!! | ATATCCTTTGTTTCTTTTGT+TGG | - | tig0030514:26262-26281 | None:intergenic | 25.0% |
! | CTATCAAAATTCCAATTTGT+TGG | + | tig0030514:24759-24778 | Msa1443730:CDS | 25.0% |
!! | AGCTTTGACTATATTTCTAT+GGG | + | tig0030514:24886-24905 | Msa1443730:CDS | 25.0% |
! | AAAATTCAGGAAAAAGATCT+AGG | + | tig0030514:25052-25071 | Msa1443730:CDS | 25.0% |
! | ACCTATAAAATCAAATGACA+CGG | - | tig0030514:25225-25244 | None:intergenic | 25.0% |
!! | TGCATATCTTTTATGACTTA+CGG | - | tig0030514:25648-25667 | None:intergenic | 25.0% |
!!! | ATGTTAATTGTTAAGTTGGT+AGG | + | tig0030514:25722-25741 | Msa1443730:intron | 25.0% |
! | GTGCTTATTCATAATGTATT+TGG | + | tig0030514:25754-25773 | Msa1443730:intron | 25.0% |
! | ATACAATACAAAAGGAAACA+TGG | - | tig0030514:25828-25847 | None:intergenic | 25.0% |
! | GAAGAGAAAGAATAAATGAA+AGG | + | tig0030514:25854-25873 | Msa1443730:CDS | 25.0% |
! | TGTTCAATATATAGTCTGAA+TGG | - | tig0030514:25943-25962 | None:intergenic | 25.0% |
! | GTTGTAAAAACTTCACATAT+TGG | - | tig0030514:26052-26071 | None:intergenic | 25.0% |
! | GTTCCATTCAAATTCATATA+GGG | - | tig0030514:26156-26175 | None:intergenic | 25.0% |
! | TGTTCCATTCAAATTCATAT+AGG | - | tig0030514:26157-26176 | None:intergenic | 25.0% |
!!! | TATCCTTTGTTTCTTTTGTT+GGG | - | tig0030514:26261-26280 | None:intergenic | 25.0% |
!!! | ATATCCTTTGTTTCTTTTGT+TGG | - | tig0030514:26262-26281 | None:intergenic | 25.0% |
CATAGAAATATAGTCAAAGC+TGG | - | tig0030514:24887-24906 | None:intergenic | 30.0% | |
! | CAGCTTTGACTATATTTCTA+TGG | + | tig0030514:24885-24904 | Msa1443730:CDS | 30.0% |
! | AGTGAATTTGGAATGATCTA+TGG | - | tig0030514:24917-24936 | None:intergenic | 30.0% |
AAAACGAAATGCATATCACT+TGG | - | tig0030514:25160-25179 | None:intergenic | 30.0% | |
AAAATCCAAACCATAAACTG+TGG | - | tig0030514:25186-25205 | None:intergenic | 30.0% | |
!!! | TCCGTGTCATTTGATTTTAT+AGG | + | tig0030514:25221-25240 | Msa1443730:intron | 30.0% |
TTCAATCAAGCTCGATTAAA+AGG | + | tig0030514:25688-25707 | Msa1443730:intron | 30.0% | |
!! | TCGATTAAAAGGTGTTTATG+TGG | + | tig0030514:25699-25718 | Msa1443730:intron | 30.0% |
GTGGATGTTAATTGTTAAGT+TGG | + | tig0030514:25718-25737 | Msa1443730:intron | 30.0% | |
AAAGTTACCTTAGTTCCATT+GGG | - | tig0030514:25904-25923 | None:intergenic | 30.0% | |
AATATATAGTCTGAATGGCA+TGG | - | tig0030514:25938-25957 | None:intergenic | 30.0% | |
CAACTTCAAATTAAGGTTTG+AGG | + | tig0030514:26068-26087 | Msa1443730:intron | 30.0% | |
! | TTTTAAATGCAGAGAGAGAA+AGG | - | tig0030514:26099-26118 | None:intergenic | 30.0% |
GATCCCTATATGAATTTGAA+TGG | + | tig0030514:26150-26169 | Msa1443730:intron | 30.0% | |
TTCATTCCATTGTAAGCAAT+GGG | - | tig0030514:26214-26233 | None:intergenic | 30.0% | |
!! | ATCCTTTGTTTCTTTTGTTG+GGG | - | tig0030514:26260-26279 | None:intergenic | 30.0% |
CATAGAAATATAGTCAAAGC+TGG | - | tig0030514:24887-24906 | None:intergenic | 30.0% | |
! | CAGCTTTGACTATATTTCTA+TGG | + | tig0030514:24885-24904 | Msa1443730:CDS | 30.0% |
! | AGTGAATTTGGAATGATCTA+TGG | - | tig0030514:24917-24936 | None:intergenic | 30.0% |
AAAACGAAATGCATATCACT+TGG | - | tig0030514:25160-25179 | None:intergenic | 30.0% | |
AAAATCCAAACCATAAACTG+TGG | - | tig0030514:25186-25205 | None:intergenic | 30.0% | |
!!! | TCCGTGTCATTTGATTTTAT+AGG | + | tig0030514:25221-25240 | Msa1443730:intron | 30.0% |
TTCAATCAAGCTCGATTAAA+AGG | + | tig0030514:25688-25707 | Msa1443730:intron | 30.0% | |
!! | TCGATTAAAAGGTGTTTATG+TGG | + | tig0030514:25699-25718 | Msa1443730:intron | 30.0% |
GTGGATGTTAATTGTTAAGT+TGG | + | tig0030514:25718-25737 | Msa1443730:intron | 30.0% | |
AAAGTTACCTTAGTTCCATT+GGG | - | tig0030514:25904-25923 | None:intergenic | 30.0% | |
AATATATAGTCTGAATGGCA+TGG | - | tig0030514:25938-25957 | None:intergenic | 30.0% | |
CAACTTCAAATTAAGGTTTG+AGG | + | tig0030514:26068-26087 | Msa1443730:intron | 30.0% | |
! | TTTTAAATGCAGAGAGAGAA+AGG | - | tig0030514:26099-26118 | None:intergenic | 30.0% |
GATCCCTATATGAATTTGAA+TGG | + | tig0030514:26150-26169 | Msa1443730:intron | 30.0% | |
TTCATTCCATTGTAAGCAAT+GGG | - | tig0030514:26214-26233 | None:intergenic | 30.0% | |
!! | ATCCTTTGTTTCTTTTGTTG+GGG | - | tig0030514:26260-26279 | None:intergenic | 30.0% |
TCTTGAGAAATAAGCTCAGT+AGG | - | tig0030514:24649-24668 | None:intergenic | 35.0% | |
! | CTGAGCTTATTTCTCAAGAA+TGG | + | tig0030514:24650-24669 | Msa1443730:CDS | 35.0% |
GACTTTATGAACCAGTTACT+TGG | + | tig0030514:24709-24728 | Msa1443730:CDS | 35.0% | |
GAAATGTTGTGATGAGAATG+AGG | - | tig0030514:24740-24759 | None:intergenic | 35.0% | |
AGTTTCAGTACCCAACAAAT+TGG | - | tig0030514:24773-24792 | None:intergenic | 35.0% | |
GTAACAATTGTGGAATCATG+TGG | - | tig0030514:24808-24827 | None:intergenic | 35.0% | |
AACTTGTGCAGTAACAATTG+TGG | - | tig0030514:24818-24837 | None:intergenic | 35.0% | |
ATATAGTCAAAGCTGGTTAC+TGG | - | tig0030514:24880-24899 | None:intergenic | 35.0% | |
TGTTGTACATGGAGTGAATT+TGG | - | tig0030514:24929-24948 | None:intergenic | 35.0% | |
TCATCAGATTGTGTTGTACA+TGG | - | tig0030514:24940-24959 | None:intergenic | 35.0% | |
TCTAGCTAACAAAAACTTGC+AGG | + | tig0030514:24966-24985 | Msa1443730:CDS | 35.0% | |
! | TACTTCACGTTCTGATTTTC+GGG | - | tig0030514:24992-25011 | None:intergenic | 35.0% |
! | GTACTTCACGTTCTGATTTT+CGG | - | tig0030514:24993-25012 | None:intergenic | 35.0% |
CAAATGAGGTAACAAACAGA+AGG | + | tig0030514:25079-25098 | Msa1443730:intron | 35.0% | |
TGACATTCCTCTTGTTCTTT+GGG | - | tig0030514:25248-25267 | None:intergenic | 35.0% | |
TTGACATTCCTCTTGTTCTT+TGG | - | tig0030514:25249-25268 | None:intergenic | 35.0% | |
ACAAGAGGAATGTCAAATGT+AGG | + | tig0030514:25253-25272 | Msa1443730:CDS | 35.0% | |
TTTGAGCCAGAATGATTCTA+CGG | + | tig0030514:25410-25429 | Msa1443730:CDS | 35.0% | |
ATTTAGCCGTAGAATCATTC+TGG | - | tig0030514:25419-25438 | None:intergenic | 35.0% | |
GATTCTACGGCTAAATTAAG+TGG | + | tig0030514:25423-25442 | Msa1443730:CDS | 35.0% | |
GGAAAATCAAGATCTAGTAG+AGG | + | tig0030514:25444-25463 | Msa1443730:CDS | 35.0% | |
AAAGACTTACTCTTGCATAG+AGG | - | tig0030514:25491-25510 | None:intergenic | 35.0% | |
! | ATGCAAGAGTAAGTCTTTTG+TGG | + | tig0030514:25493-25512 | Msa1443730:intron | 35.0% |
AGCAACACTTAGTTTCTCAT+AGG | + | tig0030514:25519-25538 | Msa1443730:intron | 35.0% | |
ATAGGACCACAAGATGTATT+TGG | - | tig0030514:25545-25564 | None:intergenic | 35.0% | |
TAATCGAGCTTGATTGAAAG+CGG | - | tig0030514:25686-25705 | None:intergenic | 35.0% | |
AAACATGGTAAGACCTTACA+TGG | - | tig0030514:25813-25832 | None:intergenic | 35.0% | |
AAGTTACCTTAGTTCCATTG+GGG | - | tig0030514:25903-25922 | None:intergenic | 35.0% | |
GAAAGTTACCTTAGTTCCAT+TGG | - | tig0030514:25905-25924 | None:intergenic | 35.0% | |
!! | TTTTTGTTGATTAACCCTGC+AGG | + | tig0030514:25995-26014 | Msa1443730:intron | 35.0% |
GTTCATTCCATTGTAAGCAA+TGG | - | tig0030514:26215-26234 | None:intergenic | 35.0% | |
GCTTACAATGGAATGAACAT+TGG | + | tig0030514:26217-26236 | Msa1443730:CDS | 35.0% | |
ATGAACATTGGACTTGAACT+TGG | + | tig0030514:26229-26248 | Msa1443730:CDS | 35.0% | |
TACCCCAACAAAAGAAACAA+AGG | + | tig0030514:26255-26274 | Msa1443730:CDS | 35.0% | |
! | ACTGCTGCATTCTCTTTTAT+TGG | - | tig0030514:26298-26317 | None:intergenic | 35.0% |
TCTTGAGAAATAAGCTCAGT+AGG | - | tig0030514:24649-24668 | None:intergenic | 35.0% | |
! | CTGAGCTTATTTCTCAAGAA+TGG | + | tig0030514:24650-24669 | Msa1443730:CDS | 35.0% |
GACTTTATGAACCAGTTACT+TGG | + | tig0030514:24709-24728 | Msa1443730:CDS | 35.0% | |
GAAATGTTGTGATGAGAATG+AGG | - | tig0030514:24740-24759 | None:intergenic | 35.0% | |
AGTTTCAGTACCCAACAAAT+TGG | - | tig0030514:24773-24792 | None:intergenic | 35.0% | |
GTAACAATTGTGGAATCATG+TGG | - | tig0030514:24808-24827 | None:intergenic | 35.0% | |
AACTTGTGCAGTAACAATTG+TGG | - | tig0030514:24818-24837 | None:intergenic | 35.0% | |
ATATAGTCAAAGCTGGTTAC+TGG | - | tig0030514:24880-24899 | None:intergenic | 35.0% | |
TGTTGTACATGGAGTGAATT+TGG | - | tig0030514:24929-24948 | None:intergenic | 35.0% | |
TCATCAGATTGTGTTGTACA+TGG | - | tig0030514:24940-24959 | None:intergenic | 35.0% | |
TCTAGCTAACAAAAACTTGC+AGG | + | tig0030514:24966-24985 | Msa1443730:CDS | 35.0% | |
! | TACTTCACGTTCTGATTTTC+GGG | - | tig0030514:24992-25011 | None:intergenic | 35.0% |
! | GTACTTCACGTTCTGATTTT+CGG | - | tig0030514:24993-25012 | None:intergenic | 35.0% |
CAAATGAGGTAACAAACAGA+AGG | + | tig0030514:25079-25098 | Msa1443730:intron | 35.0% | |
TGACATTCCTCTTGTTCTTT+GGG | - | tig0030514:25248-25267 | None:intergenic | 35.0% | |
TTGACATTCCTCTTGTTCTT+TGG | - | tig0030514:25249-25268 | None:intergenic | 35.0% | |
ACAAGAGGAATGTCAAATGT+AGG | + | tig0030514:25253-25272 | Msa1443730:CDS | 35.0% | |
TTTGAGCCAGAATGATTCTA+CGG | + | tig0030514:25410-25429 | Msa1443730:CDS | 35.0% | |
ATTTAGCCGTAGAATCATTC+TGG | - | tig0030514:25419-25438 | None:intergenic | 35.0% | |
GATTCTACGGCTAAATTAAG+TGG | + | tig0030514:25423-25442 | Msa1443730:CDS | 35.0% | |
GGAAAATCAAGATCTAGTAG+AGG | + | tig0030514:25444-25463 | Msa1443730:CDS | 35.0% | |
AAAGACTTACTCTTGCATAG+AGG | - | tig0030514:25491-25510 | None:intergenic | 35.0% | |
! | ATGCAAGAGTAAGTCTTTTG+TGG | + | tig0030514:25493-25512 | Msa1443730:intron | 35.0% |
AGCAACACTTAGTTTCTCAT+AGG | + | tig0030514:25519-25538 | Msa1443730:intron | 35.0% | |
ATAGGACCACAAGATGTATT+TGG | - | tig0030514:25545-25564 | None:intergenic | 35.0% | |
TAATCGAGCTTGATTGAAAG+CGG | - | tig0030514:25686-25705 | None:intergenic | 35.0% | |
AAACATGGTAAGACCTTACA+TGG | - | tig0030514:25813-25832 | None:intergenic | 35.0% | |
AAGTTACCTTAGTTCCATTG+GGG | - | tig0030514:25903-25922 | None:intergenic | 35.0% | |
GAAAGTTACCTTAGTTCCAT+TGG | - | tig0030514:25905-25924 | None:intergenic | 35.0% | |
!! | TTTTTGTTGATTAACCCTGC+AGG | + | tig0030514:25995-26014 | Msa1443730:intron | 35.0% |
GTTCATTCCATTGTAAGCAA+TGG | - | tig0030514:26215-26234 | None:intergenic | 35.0% | |
GCTTACAATGGAATGAACAT+TGG | + | tig0030514:26217-26236 | Msa1443730:CDS | 35.0% | |
ATGAACATTGGACTTGAACT+TGG | + | tig0030514:26229-26248 | Msa1443730:CDS | 35.0% | |
TACCCCAACAAAAGAAACAA+AGG | + | tig0030514:26255-26274 | Msa1443730:CDS | 35.0% | |
! | ACTGCTGCATTCTCTTTTAT+TGG | - | tig0030514:26298-26317 | None:intergenic | 35.0% |
ATGAGGAGTTACCAAGTAAC+TGG | - | tig0030514:24723-24742 | None:intergenic | 40.0% | |
!!! | TGGGTACTGAAACTGCATTT+TGG | + | tig0030514:24779-24798 | Msa1443730:CDS | 40.0% |
ACAATTGTGGAATCATGTGG+TGG | - | tig0030514:24805-24824 | None:intergenic | 40.0% | |
CTAGTATCAGAAGTTGAGGT+AGG | - | tig0030514:24841-24860 | None:intergenic | 40.0% | |
GCAACTAGTATCAGAAGTTG+AGG | - | tig0030514:24845-24864 | None:intergenic | 40.0% | |
! | ACTAGTTTCTGAACCAGAAG+AGG | + | tig0030514:25011-25030 | Msa1443730:CDS | 40.0% |
!!! | CTTGTGGTTTTATCCTCTTC+TGG | - | tig0030514:25027-25046 | None:intergenic | 40.0% |
AAGATCTAGGAGCTCAAATG+AGG | + | tig0030514:25065-25084 | Msa1443730:CDS | 40.0% | |
! | TCGTTTTCCACCACAGTTTA+TGG | + | tig0030514:25173-25192 | Msa1443730:intron | 40.0% |
TTCCACCACAGTTTATGGTT+TGG | + | tig0030514:25178-25197 | Msa1443730:intron | 40.0% | |
ATCCAAACCATAAACTGTGG+TGG | - | tig0030514:25183-25202 | None:intergenic | 40.0% | |
TATAGGTCCCAAAGAACAAG+AGG | + | tig0030514:25238-25257 | Msa1443730:intron | 40.0% | |
ACTGAAGAGAATACAAGTCC+TGG | + | tig0030514:25303-25322 | Msa1443730:CDS | 40.0% | |
GTTAAGCGGTTATTGTTCAG+AGG | + | tig0030514:25341-25360 | Msa1443730:CDS | 40.0% | |
ACGTAGCTCATGAGAAGAAT+TGG | - | tig0030514:25373-25392 | None:intergenic | 40.0% | |
AATTCTTCTCATGAGCTACG+TGG | + | tig0030514:25372-25391 | Msa1443730:CDS | 40.0% | |
CATAGGCCAAATACATCTTG+TGG | + | tig0030514:25536-25555 | Msa1443730:intron | 40.0% | |
AATCGAGCTTGATTGAAAGC+GGG | - | tig0030514:25685-25704 | None:intergenic | 40.0% | |
ATTCTGTTGCTGTCCATGTA+AGG | + | tig0030514:25797-25816 | Msa1443730:intron | 40.0% | |
! | TTCTAAGCTCTGATGACATG+TGG | + | tig0030514:26179-26198 | Msa1443730:CDS | 40.0% |
TACTCTCCCATTGCTTACAA+TGG | + | tig0030514:26205-26224 | Msa1443730:CDS | 40.0% | |
ATGAGGAGTTACCAAGTAAC+TGG | - | tig0030514:24723-24742 | None:intergenic | 40.0% | |
!!! | TGGGTACTGAAACTGCATTT+TGG | + | tig0030514:24779-24798 | Msa1443730:CDS | 40.0% |
ACAATTGTGGAATCATGTGG+TGG | - | tig0030514:24805-24824 | None:intergenic | 40.0% | |
CTAGTATCAGAAGTTGAGGT+AGG | - | tig0030514:24841-24860 | None:intergenic | 40.0% | |
GCAACTAGTATCAGAAGTTG+AGG | - | tig0030514:24845-24864 | None:intergenic | 40.0% | |
! | ACTAGTTTCTGAACCAGAAG+AGG | + | tig0030514:25011-25030 | Msa1443730:CDS | 40.0% |
!!! | CTTGTGGTTTTATCCTCTTC+TGG | - | tig0030514:25027-25046 | None:intergenic | 40.0% |
AAGATCTAGGAGCTCAAATG+AGG | + | tig0030514:25065-25084 | Msa1443730:CDS | 40.0% | |
! | TCGTTTTCCACCACAGTTTA+TGG | + | tig0030514:25173-25192 | Msa1443730:intron | 40.0% |
TTCCACCACAGTTTATGGTT+TGG | + | tig0030514:25178-25197 | Msa1443730:intron | 40.0% | |
ATCCAAACCATAAACTGTGG+TGG | - | tig0030514:25183-25202 | None:intergenic | 40.0% | |
TATAGGTCCCAAAGAACAAG+AGG | + | tig0030514:25238-25257 | Msa1443730:intron | 40.0% | |
ACTGAAGAGAATACAAGTCC+TGG | + | tig0030514:25303-25322 | Msa1443730:CDS | 40.0% | |
GTTAAGCGGTTATTGTTCAG+AGG | + | tig0030514:25341-25360 | Msa1443730:CDS | 40.0% | |
ACGTAGCTCATGAGAAGAAT+TGG | - | tig0030514:25373-25392 | None:intergenic | 40.0% | |
AATTCTTCTCATGAGCTACG+TGG | + | tig0030514:25372-25391 | Msa1443730:CDS | 40.0% | |
CATAGGCCAAATACATCTTG+TGG | + | tig0030514:25536-25555 | Msa1443730:intron | 40.0% | |
AATCGAGCTTGATTGAAAGC+GGG | - | tig0030514:25685-25704 | None:intergenic | 40.0% | |
ATTCTGTTGCTGTCCATGTA+AGG | + | tig0030514:25797-25816 | Msa1443730:intron | 40.0% | |
! | TTCTAAGCTCTGATGACATG+TGG | + | tig0030514:26179-26198 | Msa1443730:CDS | 40.0% |
TACTCTCCCATTGCTTACAA+TGG | + | tig0030514:26205-26224 | Msa1443730:CDS | 40.0% | |
! | CAAGAATGGACTTCTCTCAG+TGG | + | tig0030514:24664-24683 | Msa1443730:CDS | 45.0% |
ACCACAAGCGCAGAAAATTC+AGG | + | tig0030514:25039-25058 | Msa1443730:CDS | 45.0% | |
! | TCCTGAATTTTCTGCGCTTG+TGG | - | tig0030514:25043-25062 | None:intergenic | 45.0% |
! | GAATACAAGTCCTGGTTCTC+AGG | + | tig0030514:25311-25330 | Msa1443730:CDS | 45.0% |
TCTCAGGATCAGACGTTAAG+CGG | + | tig0030514:25327-25346 | Msa1443730:CDS | 45.0% | |
TTCTCATGAGCTACGTGGAA+GGG | + | tig0030514:25377-25396 | Msa1443730:CDS | 45.0% | |
!! | CATTGGGGACAAGGTTTTGT+AGG | - | tig0030514:25888-25907 | None:intergenic | 45.0% |
CTACAAAACCTTGTCCCCAA+TGG | + | tig0030514:25886-25905 | Msa1443730:CDS | 45.0% | |
! | TTGTTGATTAACCCTGCAGG+TGG | + | tig0030514:25998-26017 | Msa1443730:intron | 45.0% |
! | CAAGAATGGACTTCTCTCAG+TGG | + | tig0030514:24664-24683 | Msa1443730:CDS | 45.0% |
ACCACAAGCGCAGAAAATTC+AGG | + | tig0030514:25039-25058 | Msa1443730:CDS | 45.0% | |
! | TCCTGAATTTTCTGCGCTTG+TGG | - | tig0030514:25043-25062 | None:intergenic | 45.0% |
! | GAATACAAGTCCTGGTTCTC+AGG | + | tig0030514:25311-25330 | Msa1443730:CDS | 45.0% |
TCTCAGGATCAGACGTTAAG+CGG | + | tig0030514:25327-25346 | Msa1443730:CDS | 45.0% | |
TTCTCATGAGCTACGTGGAA+GGG | + | tig0030514:25377-25396 | Msa1443730:CDS | 45.0% | |
!! | CATTGGGGACAAGGTTTTGT+AGG | - | tig0030514:25888-25907 | None:intergenic | 45.0% |
CTACAAAACCTTGTCCCCAA+TGG | + | tig0030514:25886-25905 | Msa1443730:CDS | 45.0% | |
! | TTGTTGATTAACCCTGCAGG+TGG | + | tig0030514:25998-26017 | Msa1443730:intron | 45.0% |
AACGTCTGATCCTGAGAACC+AGG | - | tig0030514:25324-25343 | None:intergenic | 50.0% | |
CTTCTCATGAGCTACGTGGA+AGG | + | tig0030514:25376-25395 | Msa1443730:CDS | 50.0% | |
ACTCTTGCATAGAGGCTCTG+TGG | - | tig0030514:25483-25502 | None:intergenic | 50.0% | |
CCTTAGTTCCATTGGGGACA+AGG | - | tig0030514:25897-25916 | None:intergenic | 50.0% | |
CCTTGTCCCCAATGGAACTA+AGG | + | tig0030514:25894-25913 | Msa1443730:CDS | 50.0% | |
GGATATCAGCACCATGCTTG+AGG | + | tig0030514:26019-26038 | Msa1443730:CDS | 50.0% | |
TTGGACAGCTTCCTCAAGCA+TGG | - | tig0030514:26033-26052 | None:intergenic | 50.0% | |
AACGTCTGATCCTGAGAACC+AGG | - | tig0030514:25324-25343 | None:intergenic | 50.0% | |
CTTCTCATGAGCTACGTGGA+AGG | + | tig0030514:25376-25395 | Msa1443730:CDS | 50.0% | |
ACTCTTGCATAGAGGCTCTG+TGG | - | tig0030514:25483-25502 | None:intergenic | 50.0% | |
CCTTAGTTCCATTGGGGACA+AGG | - | tig0030514:25897-25916 | None:intergenic | 50.0% | |
CCTTGTCCCCAATGGAACTA+AGG | + | tig0030514:25894-25913 | Msa1443730:CDS | 50.0% | |
GGATATCAGCACCATGCTTG+AGG | + | tig0030514:26019-26038 | Msa1443730:CDS | 50.0% | |
TTGGACAGCTTCCTCAAGCA+TGG | - | tig0030514:26033-26052 | None:intergenic | 50.0% | |
! | CAGTGGACTCTACACTGCTG+AGG | + | tig0030514:24681-24700 | Msa1443730:CDS | 55.0% |
AGGCTCTGTGGATCAGTAGC+AGG | - | tig0030514:25471-25490 | None:intergenic | 55.0% | |
!! | GGTGCTGATATCCACCTGCA+GGG | - | tig0030514:26012-26031 | None:intergenic | 55.0% |
!! | TGGTGCTGATATCCACCTGC+AGG | - | tig0030514:26013-26032 | None:intergenic | 55.0% |
! | CAGTGGACTCTACACTGCTG+AGG | + | tig0030514:24681-24700 | Msa1443730:CDS | 55.0% |
AGGCTCTGTGGATCAGTAGC+AGG | - | tig0030514:25471-25490 | None:intergenic | 55.0% | |
!! | GGTGCTGATATCCACCTGCA+GGG | - | tig0030514:26012-26031 | None:intergenic | 55.0% |
!! | TGGTGCTGATATCCACCTGC+AGG | - | tig0030514:26013-26032 | None:intergenic | 55.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
tig0030514 | gene | 24640 | 26321 | 24640 | ID=Msa1443730;Name=Msa1443730 |
tig0030514 | mRNA | 24640 | 26321 | 24640 | ID=Msa1443730-mRNA-1;Parent=Msa1443730;Name=Msa1443730-mRNA-1;_AED=0.08;_eAED=0.08;_QI=0|0|0|1|1|1|5|0|326 |
tig0030514 | exon | 24640 | 25086 | 24640 | ID=Msa1443730-mRNA-1:exon:14040;Parent=Msa1443730-mRNA-1 |
tig0030514 | exon | 25243 | 25500 | 25243 | ID=Msa1443730-mRNA-1:exon:14041;Parent=Msa1443730-mRNA-1 |
tig0030514 | exon | 25850 | 25915 | 25850 | ID=Msa1443730-mRNA-1:exon:14042;Parent=Msa1443730-mRNA-1 |
tig0030514 | exon | 26017 | 26082 | 26017 | ID=Msa1443730-mRNA-1:exon:14043;Parent=Msa1443730-mRNA-1 |
tig0030514 | exon | 26178 | 26321 | 26178 | ID=Msa1443730-mRNA-1:exon:14044;Parent=Msa1443730-mRNA-1 |
tig0030514 | CDS | 24640 | 25086 | 24640 | ID=Msa1443730-mRNA-1:cds;Parent=Msa1443730-mRNA-1 |
tig0030514 | CDS | 25243 | 25500 | 25243 | ID=Msa1443730-mRNA-1:cds;Parent=Msa1443730-mRNA-1 |
tig0030514 | CDS | 25850 | 25915 | 25850 | ID=Msa1443730-mRNA-1:cds;Parent=Msa1443730-mRNA-1 |
tig0030514 | CDS | 26017 | 26082 | 26017 | ID=Msa1443730-mRNA-1:cds;Parent=Msa1443730-mRNA-1 |
tig0030514 | CDS | 26178 | 26321 | 26178 | ID=Msa1443730-mRNA-1:cds;Parent=Msa1443730-mRNA-1 |
Gene Sequence |
Protein sequence |