AlfalfaGEDB | Msa1447390

M. sativa cultivar zhongmu-4 / Msa1447390

KEGG: K09260
GO: GO:0000003 GO:0001067 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0006950 GO:0007275 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0010015 GO:0010048 GO:0010073 GO:0010074 GO:0010075 GO:0010076 GO:0010082 GO:0010228 GO:0010468 GO:0010556 GO:0010817 GO:0019219 GO:0019222 GO:0019827 GO:0022414 GO:0022622 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032879 GO:0040008 GO:0040034 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044212 GO:0044424 GO:0044464 GO:0048364 GO:0048506 GO:0048507 GO:0048509 GO:0048510 GO:0048608 GO:0048638 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051049 GO:0051171 GO:0051239 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0065008 GO:0080090 GO:0097159 GO:0098727 GO:0099402 GO:0140110 GO:1901363 GO:1903506 GO:1905392 GO:2000012 GO:2000026 GO:2000112 GO:2000280 GO:2001141
PFAM: PF00319.21

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1447390	sp\|O82743\|AGL19_ARATH	75.309	81	20	0	1	81	1	81	3.67e-38	129

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1447390	A0A072UQQ3	97.727	88	2	0	1	88	1	88	5.15e-53	173

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TFs/TRs:

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Gene ID	Type	Classification
Msa1447390	TF	MADS-M-type

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa1225370	Msa1447390	0.809367	1.959757e-50	-8.615850e-47
Msa1298260	Msa1447390	0.862731	4.117224e-64	-8.615850e-47
Msa1447390	Msa1451320	0.999413	1.110589e-309	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1447390	MtrunA17_Chr4g0057151	97.727	88	2	0	1	88	1	88	9.91e-57	173
Msa1447390	MtrunA17_Chr8g0351041	81.081	74	14	0	1	74	1	74	6.05e-39	127
Msa1447390	MtrunA17_Chr8g0351031	81.081	74	14	0	1	74	1	74	1.73e-38	127
Msa1447390	MtrunA17_Chr7g0246431	68.182	88	28	0	1	88	1	88	2.58e-38	127
Msa1447390	MtrunA17_Chr8g0351051	74.286	70	18	0	1	70	1	70	1.39e-32	113
Msa1447390	MtrunA17_Chr3g0097101	71.429	70	20	0	1	70	16	85	2.84e-32	112
Msa1447390	MtrunA17_Chr3g0077501	71.429	70	20	0	1	70	1	70	5.04e-32	111
Msa1447390	MtrunA17_Chr5g0420091	71.831	71	19	1	1	70	1	71	5.81e-32	110
Msa1447390	MtrunA17_Chr3g0122251	76.056	71	16	1	1	70	1	71	6.44e-32	111
Msa1447390	MtrunA17_Chr2g0284911	59.302	86	35	0	3	88	18	103	1.28e-31	110

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1447390	AT4G22950.2	75.309	81	20	0	1	81	1	81	1.04e-39	129
Msa1447390	AT4G22950.3	75.309	81	20	0	1	81	1	81	3.73e-39	129
Msa1447390	AT4G22950.1	75.309	81	20	0	1	81	1	81	3.73e-39	129
Msa1447390	AT4G11880.2	72.527	91	23	2	1	90	1	90	3.98e-39	128
Msa1447390	AT4G11880.3	72.527	91	23	2	1	90	1	90	3.98e-39	128
Msa1447390	AT4G11880.4	72.527	91	23	2	1	90	1	90	5.50e-39	129
Msa1447390	AT4G11880.1	72.527	91	23	2	1	90	1	90	5.50e-39	129
Msa1447390	AT2G45660.2	69.663	89	25	2	1	88	1	88	5.69e-38	124
Msa1447390	AT2G45660.1	69.663	89	25	2	1	88	1	88	3.48e-37	124
Msa1447390	AT5G62165.14	61.364	88	34	0	1	88	1	88	2.22e-34	114

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Find 32 sgRNAs with CRISPR-Local

Find 263 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACAGTGGAACGCTATCAA+GGG	0.614255	tig0031748:-2592	Msa1447390:CDS
AAATTAAACATACCTTGAAC+TGG	0.446342	tig0031748:+6733	None:intergenic
AAGAAATGGACTGCTTAAAA+AGG	0.324915	tig0031748:-6834	Msa1447390:CDS
AAGATAATACCTTGACATCT+AGG	0.389908	tig0031748:-7274	None:intergenic
AATATTCTGGAAGAAAAGAA+TGG	0.523738	tig0031748:+7108	None:intergenic
ACAAAGCACTGAAAGTTCAA+AGG	0.613392	tig0031748:+6811	None:intergenic
ACATCTAGGTAGGTTACATA+GGG	0.570043	tig0031748:-7260	Msa1447390:five_prime_UTR
ACGCTATCAAGGGAAAGTTA+AGG	0.569325	tig0031748:-2582	Msa1447390:CDS
ACTCACTGCAATCAATCAAC+TGG	0.471886	tig0031748:-7227	Msa1447390:five_prime_UTR
ACTTTCTCAAAGAGAAGAAA+TGG	0.422858	tig0031748:-6848	Msa1447390:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAATAAGAAAGAGCAGAG+GGG	+	tig0031748:2603-2622	None:intergenic	30.0%
GAAAAATAAGAAAGAGCAGA+GGG	+	tig0031748:2604-2623	None:intergenic	30.0%
AGAAAAATAAGAAAGAGCAG+AGG	+	tig0031748:2605-2624	None:intergenic	30.0%
AATGAGATCTAGTTAACCAA+AGG	+	tig0031748:2798-2817	None:intergenic	30.0%
TTATTCATCAAAATGGTGAG+AGG	-	tig0031748:2879-2898	Msa1447390:intron	30.0%
ACTTTCTCAAAGAGAAGAAA+TGG	-	tig0031748:2948-2967	Msa1447390:intron	30.0%
GTATTGTGTACTTGATTACT+TGG	-	tig0031748:3140-3159	Msa1447390:intron	30.0%
GGTTAAATATGCCAACTATA+AGG	-	tig0031748:3355-3374	Msa1447390:intron	30.0%
CACACACTTGACATAAAAAA+AGG	-	tig0031748:3755-3774	Msa1447390:intron	30.0%
AAAAAAGGTAAATTTCCCCT+CGG	-	tig0031748:3770-3789	Msa1447390:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
tig0031748	gene	2535	7283	2535	ID=Msa1447390;Name=Msa1447390
tig0031748	mRNA	2535	7283	2535	ID=Msa1447390-mRNA-1;Parent=Msa1447390;Name=Msa1447390-mRNA-1;_AED=0.08;_eAED=0.08;_QI=270\|1\|1\|1\|0.5\|0.33\|3\|0\|90
tig0031748	exon	2535	2622	2535	ID=Msa1447390-mRNA-1:exon:15896;Parent=Msa1447390-mRNA-1
tig0031748	exon	6746	7008	6746	ID=Msa1447390-mRNA-1:exon:15895;Parent=Msa1447390-mRNA-1
tig0031748	exon	7095	7283	7095	ID=Msa1447390-mRNA-1:exon:15894;Parent=Msa1447390-mRNA-1
tig0031748	five_prime_UTR	7095	7283	7095	ID=Msa1447390-mRNA-1:five_prime_utr;Parent=Msa1447390-mRNA-1
tig0031748	five_prime_UTR	6928	7008	6928	ID=Msa1447390-mRNA-1:five_prime_utr;Parent=Msa1447390-mRNA-1
tig0031748	CDS	6746	6927	6746	ID=Msa1447390-mRNA-1:cds;Parent=Msa1447390-mRNA-1
tig0031748	CDS	2535	2622	2535	ID=Msa1447390-mRNA-1:cds;Parent=Msa1447390-mRNA-1

Gene Sequence	>Msa1447390 ATGGTGAGAGGAAAAACCCAAATGAAACGCATCGAAAATGAGTCAAACAGACAAGTAACTTTCTCAAAGAGAAGAAATGGACTGCTTAAAAAGGCCTTTGAACTTTCAGTGCTTTGTGATGCTGAAGTAGCACTCATCGTCTTCTCTACCACTGGGAAACTCTATGAGTTCTCCAGTTCAAGTATAAGCGAAACAGTGGAACGCTATCAAGGGAAAGTTAAGGAACTGGCTCTCAGCACCAAAGGAATCCAAGAAAATACACAGGTTAGC
Protein sequence	>Msa1447390 MVRGKTQMKRIENESNRQVTFSKRRNGLLKKAFELSVLCDAEVALIVFSTTGKLYEFSSSSISETVERYQGKVKELALSTKGIQENTQVS