AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1447390

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1447390 MtrunA17_Chr4g0057151 97.727 88 2 0 1 88 1 88 9.91e-57 173
Msa1447390 MtrunA17_Chr8g0351041 81.081 74 14 0 1 74 1 74 6.05e-39 127
Msa1447390 MtrunA17_Chr8g0351031 81.081 74 14 0 1 74 1 74 1.73e-38 127
Msa1447390 MtrunA17_Chr7g0246431 68.182 88 28 0 1 88 1 88 2.58e-38 127
Msa1447390 MtrunA17_Chr8g0351051 74.286 70 18 0 1 70 1 70 1.39e-32 113
Msa1447390 MtrunA17_Chr3g0097101 71.429 70 20 0 1 70 16 85 2.84e-32 112
Msa1447390 MtrunA17_Chr3g0077501 71.429 70 20 0 1 70 1 70 5.04e-32 111
Msa1447390 MtrunA17_Chr5g0420091 71.831 71 19 1 1 70 1 71 5.81e-32 110
Msa1447390 MtrunA17_Chr3g0122251 76.056 71 16 1 1 70 1 71 6.44e-32 111
Msa1447390 MtrunA17_Chr2g0284911 59.302 86 35 0 3 88 18 103 1.28e-31 110
Msa1447390 MtrunA17_Chr8g0380021 72.059 68 19 0 3 70 19 86 1.29e-31 110
Msa1447390 MtrunA17_Chr7g0220111 73.239 71 18 1 1 70 1 71 2.25e-31 110
Msa1447390 MtrunA17_Chr6g0455511 73.239 71 18 1 1 70 1 71 3.69e-31 109
Msa1447390 MtrunA17_Chr4g0061671 70.423 71 20 1 1 70 1 71 8.16e-31 107
Msa1447390 MtrunA17_Chr2g0279821 69.565 69 21 0 1 69 1 69 3.47e-30 106
Msa1447390 MtrunA17_Chr7g0246381 75.410 61 15 0 1 61 1 61 3.93e-29 99.4
Msa1447390 MtrunA17_Chr4g0061691 70.423 71 20 1 1 70 1 71 8.06e-29 103
Msa1447390 MtrunA17_Chr4g0020221 69.565 69 21 0 1 69 1 69 1.27e-28 103
Msa1447390 MtrunA17_Chr1g0204111 65.714 70 24 0 1 70 17 86 1.81e-28 102
Msa1447390 MtrunA17_Chr1g0173161 75.806 62 15 0 1 62 1 62 1.88e-28 97.8
Msa1447390 MtrunA17_Chr8g0377561 77.586 58 13 0 1 58 1 58 3.08e-28 97.8
Msa1447390 MtrunA17_Chr5g0412271 63.636 77 28 0 1 77 1 77 3.51e-28 101
Msa1447390 MtrunA17_Chr2g0308251 68.116 69 22 0 1 69 1 69 4.03e-28 97.1
Msa1447390 MtrunA17_Chr5g0412461 63.636 77 28 0 1 77 1 77 5.33e-28 100
Msa1447390 MtrunA17_Chr8g0366231 69.014 71 21 1 1 70 1 71 6.01e-28 100
Msa1447390 MtrunA17_Chr6g0474371 66.197 71 23 1 1 70 1 71 6.27e-28 99.8
Msa1447390 MtrunA17_Chr4g0049541 60.000 75 30 0 1 75 1 75 1.08e-26 97.4
Msa1447390 MtrunA17_Chr5g0427921 66.667 60 20 0 1 60 1 60 2.09e-26 92.0
Msa1447390 MtrunA17_Chr5g0427401 60.870 69 27 0 1 69 1 69 2.24e-26 96.7
Msa1447390 MtrunA17_Chr3g0142191 62.667 75 26 1 1 73 1 75 3.19e-26 96.3
Msa1447390 MtrunA17_Chr7g0220121 64.789 71 24 1 1 70 1 71 3.65e-26 96.7
Msa1447390 MtrunA17_Chr5g0420081 56.667 90 35 1 1 86 1 90 9.58e-26 95.1
Msa1447390 MtrunA17_Chr5g0411691 59.420 69 28 0 1 69 1 69 1.08e-25 95.1
Msa1447390 MtrunA17_Chr4g0049901 61.972 71 27 0 1 71 27 97 1.17e-25 95.1
Msa1447390 MtrunA17_Chr3g0125241 58.333 72 28 1 1 70 26 97 1.27e-25 94.4
Msa1447390 MtrunA17_Chr4g0018421 60.000 70 27 1 1 69 1 70 8.71e-25 92.0
Msa1447390 MtrunA17_Chr1g0164791 56.944 72 29 1 1 70 1 72 1.75e-23 89.4
Msa1447390 MtrunA17_Chr3g0134451 64.286 70 24 1 1 69 1 70 2.18e-23 90.5
Msa1447390 MtrunA17_Chr5g0404951 51.250 80 37 1 1 78 1 80 4.17e-23 88.2
Msa1447390 MtrunA17_Chr1g0159661 52.778 72 32 1 1 70 1 72 6.02e-23 86.7
Msa1447390 MtrunA17_Chr1g0166611 83.333 48 8 0 13 60 17 64 1.31e-22 84.7
Msa1447390 MtrunA17_Chr5g0425191 65.517 58 20 0 1 58 1 58 2.94e-22 82.8
Msa1447390 MtrunA17_Chr4g0044071 63.793 58 21 0 1 58 1 58 4.94e-22 82.4
Msa1447390 MtrunA17_Chr1g0208561 53.731 67 31 0 3 69 10 76 4.06e-21 83.2
Msa1447390 MtrunA17_Chr2g0325971 53.731 67 31 0 3 69 10 76 4.37e-21 83.2
Msa1447390 MtrunA17_Chr1g0208581 53.731 67 31 0 3 69 10 76 4.76e-21 82.8
Msa1447390 MtrunA17_Chr3g0089141 53.731 67 31 0 3 69 10 76 5.02e-21 82.8
Msa1447390 MtrunA17_Chr2g0292791 52.055 73 35 0 3 75 10 82 8.00e-21 82.4
Msa1447390 MtrunA17_Chr3g0099411 50.685 73 36 0 3 75 10 82 1.42e-20 81.6
Msa1447390 MtrunA17_Chr8g0355091 52.055 73 35 0 3 75 10 82 2.43e-20 81.3
Msa1447390 MtrunA17_Chr1g0206721 50.685 73 36 0 3 75 10 82 2.56e-20 81.3
Msa1447390 MtrunA17_Chr3g0099421 52.055 73 35 0 3 75 35 107 2.62e-20 81.6
Msa1447390 MtrunA17_Chr1g0206701 50.685 73 36 0 3 75 10 82 5.00e-20 80.5
Msa1447390 MtrunA17_Chr1g0187361 50.685 73 36 0 3 75 10 82 5.32e-20 80.5
Msa1447390 MtrunA17_Chr1g0149391 50.000 72 36 0 3 74 10 81 1.97e-19 79.0
Msa1447390 MtrunA17_Chr5g0419601 53.731 67 31 0 3 69 10 76 5.92e-19 77.8
Msa1447390 MtrunA17_Chr2g0317481 52.239 67 32 0 3 69 10 76 6.79e-19 77.4
Msa1447390 MtrunA17_Chr2g0317451 52.239 67 32 0 3 69 10 76 6.79e-19 77.4
Msa1447390 MtrunA17_Chr1g0188671 52.113 71 34 0 3 73 48 118 1.60e-18 77.0
Msa1447390 MtrunA17_Chr1g0206991 47.887 71 37 0 3 73 10 80 1.68e-18 75.5
Msa1447390 MtrunA17_Chr5g0422941 47.945 73 38 0 3 75 10 82 4.77e-18 75.1
Msa1447390 MtrunA17_Chr5g0422421 49.296 71 36 0 3 73 10 80 7.49e-18 74.7
Msa1447390 MtrunA17_Chr8g0379021 49.254 67 34 0 3 69 13 79 8.47e-18 73.6
Msa1447390 MtrunA17_Chr2g0300421 49.254 67 34 0 3 69 10 76 2.30e-17 72.4
Msa1447390 MtrunA17_Chr4g0018951 54.839 62 28 0 15 76 25 86 4.14e-17 71.2
Msa1447390 MtrunA17_Chr1g0187351 52.542 59 28 0 11 69 1 59 4.89e-17 68.6
Msa1447390 MtrunA17_Chr3g0089151 44.444 81 43 1 2 80 7 87 5.01e-17 70.5
Msa1447390 MtrunA17_Chr2g0333981 49.275 69 35 0 1 69 11 79 6.63e-17 71.2
Msa1447390 MtrunA17_Chr8g0376821 46.377 69 37 0 1 69 1 69 8.39e-17 70.9
Msa1447390 MtrunA17_Chr8g0357771 46.377 69 37 0 1 69 1 69 8.85e-17 70.9
Msa1447390 MtrunA17_Chr3g0111841 57.627 59 24 1 8 66 2 59 1.17e-16 67.8
Msa1447390 MtrunA17_Chr1g0206691 49.231 65 33 0 11 75 1 65 1.38e-16 71.2
Msa1447390 MtrunA17_Chr1g0175611 46.377 69 37 0 1 69 1 69 1.87e-16 69.7
Msa1447390 MtrunA17_Chr1g0169761 46.377 69 37 0 1 69 1 69 2.30e-16 69.7
Msa1447390 MtrunA17_Chr2g0300441 44.737 76 42 0 5 80 12 87 2.82e-16 70.5
Msa1447390 MtrunA17_Chr1g0180591 44.928 69 38 0 1 69 1 69 2.82e-16 69.3
Msa1447390 MtrunA17_Chr4g0052081 43.421 76 43 0 1 76 1 76 3.25e-16 69.3
Msa1447390 MtrunA17_Chr4g0074101 43.038 79 45 0 1 79 1 79 3.71e-16 69.7
Msa1447390 MtrunA17_Chr1g0175601 46.377 69 37 0 1 69 1 69 9.09e-16 68.2
Msa1447390 MtrunA17_Chr3g0119901 44.776 67 37 0 3 69 10 76 1.31e-15 68.2
Msa1447390 MtrunA17_Chr3g0085241 46.269 67 36 0 3 69 42 108 2.20e-15 68.2
Msa1447390 MtrunA17_Chr4g0060841 46.479 71 36 1 1 69 1 71 2.44e-15 68.9
Msa1447390 MtrunA17_Chr5g0417661 52.830 53 25 0 1 53 56 108 2.95e-15 65.9
Msa1447390 MtrunA17_Chr4g0052061 42.029 69 40 0 1 69 1 69 1.99e-14 64.3
Msa1447390 MtrunA17_Chr8g0356071 40.580 69 41 0 1 69 1 69 1.65e-13 62.0
Msa1447390 MtrunA17_Chr7g0238991 43.478 69 38 1 2 69 20 88 2.09e-12 60.5
Msa1447390 MtrunA17_Chr4g0071601 50.909 55 27 0 15 69 25 79 2.16e-12 59.3
Msa1447390 MtrunA17_Chr3g0111831 45.161 62 34 0 9 70 11 72 4.75e-12 56.2
Msa1447390 MtrunA17_Chr3g0111931 41.429 70 38 1 14 83 2 68 7.97e-11 53.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1447390 AT4G22950.2 75.309 81 20 0 1 81 1 81 1.04e-39 129
Msa1447390 AT4G22950.3 75.309 81 20 0 1 81 1 81 3.73e-39 129
Msa1447390 AT4G22950.1 75.309 81 20 0 1 81 1 81 3.73e-39 129
Msa1447390 AT4G11880.2 72.527 91 23 2 1 90 1 90 3.98e-39 128
Msa1447390 AT4G11880.3 72.527 91 23 2 1 90 1 90 3.98e-39 128
Msa1447390 AT4G11880.4 72.527 91 23 2 1 90 1 90 5.50e-39 129
Msa1447390 AT4G11880.1 72.527 91 23 2 1 90 1 90 5.50e-39 129
Msa1447390 AT2G45660.2 69.663 89 25 2 1 88 1 88 5.69e-38 124
Msa1447390 AT2G45660.1 69.663 89 25 2 1 88 1 88 3.48e-37 124
Msa1447390 AT5G62165.14 61.364 88 34 0 1 88 1 88 2.22e-34 114
Msa1447390 AT5G62165.6 61.364 88 34 0 1 88 1 88 4.85e-34 114
Msa1447390 AT5G62165.9 61.364 88 34 0 1 88 1 88 4.85e-34 114
Msa1447390 AT5G62165.7 61.364 88 34 0 1 88 1 88 4.85e-34 114
Msa1447390 AT5G62165.8 61.364 88 34 0 1 88 1 88 4.85e-34 114
Msa1447390 AT5G62165.13 61.364 88 34 0 1 88 1 88 4.85e-34 114
Msa1447390 AT5G62165.17 61.364 88 34 0 1 88 1 88 6.18e-34 114
Msa1447390 AT5G62165.12 61.364 88 34 0 1 88 1 88 6.18e-34 114
Msa1447390 AT5G62165.11 61.364 88 34 0 1 88 1 88 6.18e-34 114
Msa1447390 AT2G45650.1 65.909 88 29 1 1 88 1 87 1.78e-33 115
Msa1447390 AT5G62165.10 61.364 88 34 0 1 88 1 88 2.44e-33 114
Msa1447390 AT5G62165.4 61.364 88 34 0 1 88 1 88 2.44e-33 114
Msa1447390 AT5G62165.3 61.364 88 34 0 1 88 1 88 3.49e-33 114
Msa1447390 AT5G62165.1 61.364 88 34 0 1 88 1 88 3.49e-33 114
Msa1447390 AT5G62165.2 61.364 88 34 0 1 88 1 88 3.49e-33 114
Msa1447390 AT4G09960.2 63.529 85 30 1 1 85 1 84 5.21e-33 114
Msa1447390 AT4G09960.1 63.529 85 30 1 1 85 1 84 7.57e-33 114
Msa1447390 AT4G09960.6 63.529 85 30 1 1 85 2 85 7.59e-33 114
Msa1447390 AT4G09960.5 63.529 85 30 1 1 85 11 94 8.99e-33 114
Msa1447390 AT4G09960.3 63.529 85 30 1 1 85 27 110 2.08e-32 113
Msa1447390 AT1G24260.3 76.056 71 16 1 1 70 1 71 5.90e-32 111
Msa1447390 AT4G18960.1 68.493 73 23 0 3 75 19 91 7.06e-32 112
Msa1447390 AT1G24260.2 76.056 71 16 1 1 70 1 71 8.56e-32 111
Msa1447390 AT4G09960.4 72.857 70 19 0 1 70 96 165 8.82e-32 113
Msa1447390 AT1G24260.1 76.056 71 16 1 1 70 1 71 9.12e-32 111
Msa1447390 AT3G58780.1 59.302 86 35 0 3 88 18 103 1.12e-31 111
Msa1447390 AT3G58780.5 59.302 86 35 0 3 88 24 109 1.21e-31 111
Msa1447390 AT3G58780.4 59.302 86 35 0 3 88 18 103 1.62e-31 111
Msa1447390 AT2G42830.2 59.302 86 35 0 3 88 18 103 1.65e-31 110
Msa1447390 AT2G42830.1 59.302 86 35 0 3 88 18 103 1.83e-31 110
Msa1447390 AT5G15800.1 73.239 71 18 1 1 70 1 71 4.07e-31 109
Msa1447390 AT5G15800.2 73.239 71 18 1 1 70 1 71 6.96e-31 109
Msa1447390 AT3G02310.2 73.239 71 18 1 1 70 1 71 8.02e-31 107
Msa1447390 AT3G02310.1 73.239 71 18 1 1 70 1 71 9.10e-31 108
Msa1447390 AT2G03710.3 68.056 72 21 1 1 70 1 72 2.03e-30 106
Msa1447390 AT3G57230.2 68.116 69 22 0 1 69 1 69 3.95e-30 104
Msa1447390 AT2G03710.1 68.056 72 21 1 1 70 1 72 7.61e-30 106
Msa1447390 AT2G03710.2 68.056 72 21 1 1 70 1 72 7.86e-30 106
Msa1447390 AT3G61120.1 71.014 69 20 0 1 69 1 69 1.42e-29 105
Msa1447390 AT3G57230.1 68.116 69 22 0 1 69 1 69 2.25e-29 105
Msa1447390 AT3G57230.4 68.116 69 22 0 1 69 1 69 2.25e-29 105
Msa1447390 AT5G13790.2 59.302 86 35 0 1 86 1 86 1.05e-28 103
Msa1447390 AT5G60910.1 71.429 70 19 1 1 69 1 70 1.68e-28 102
Msa1447390 AT5G51860.2 66.667 69 23 0 1 69 1 69 1.93e-28 101
Msa1447390 AT5G51860.1 66.667 69 23 0 1 69 1 69 2.51e-28 101
Msa1447390 AT1G69120.2 69.014 71 21 1 1 70 1 71 3.26e-28 102
Msa1447390 AT5G13790.1 69.565 69 21 0 1 69 1 69 3.76e-28 102
Msa1447390 AT5G51870.2 65.217 69 24 0 1 69 1 69 4.91e-28 99.8
Msa1447390 AT1G69120.1 69.014 71 21 1 1 70 1 71 6.68e-28 101
Msa1447390 AT3G57390.3 65.217 69 24 0 1 69 1 69 9.33e-28 100
Msa1447390 AT5G51870.5 65.217 69 24 0 1 69 24 92 1.02e-27 99.8
Msa1447390 AT5G51870.1 65.217 69 24 0 1 69 1 69 1.22e-27 99.8
Msa1447390 AT2G22540.3 63.158 76 28 0 1 76 1 76 1.63e-27 100
Msa1447390 AT2G22540.1 63.158 76 28 0 1 76 1 76 1.63e-27 100
Msa1447390 AT5G51870.4 65.217 69 24 0 1 69 1 69 1.75e-27 99.8
Msa1447390 AT3G57390.1 65.217 69 24 0 1 69 1 69 1.77e-27 100
Msa1447390 AT3G58780.3 74.576 59 15 0 3 61 18 76 2.23e-27 100
Msa1447390 AT5G51870.3 65.217 69 24 0 1 69 11 79 2.35e-27 99.8
Msa1447390 AT4G37940.3 62.319 69 26 0 1 69 1 69 3.46e-27 97.8
Msa1447390 AT3G58780.2 74.138 58 15 0 3 60 18 75 3.68e-27 99.4
Msa1447390 AT1G26310.1 70.423 71 20 1 1 70 1 71 4.03e-27 99.8
Msa1447390 AT4G37940.4 62.319 69 26 0 1 69 1 69 4.59e-27 98.6
Msa1447390 AT4G37940.1 62.319 69 26 0 1 69 1 69 6.12e-27 98.6
Msa1447390 AT2G14210.1 63.158 76 26 2 1 75 1 75 1.92e-26 97.4
Msa1447390 AT2G14210.2 63.158 76 26 2 1 75 1 75 2.28e-26 97.4
Msa1447390 AT3G30260.1 64.789 71 24 1 1 70 1 71 9.30e-26 95.9
Msa1447390 AT3G54340.1 61.111 72 26 1 1 70 1 72 1.28e-25 95.1
Msa1447390 AT2G22630.1 60.870 69 27 0 1 69 1 69 1.70e-25 94.7
Msa1447390 AT2G22630.2 60.870 69 27 0 1 69 1 69 1.70e-25 94.7
Msa1447390 AT4G24540.1 63.768 69 25 0 1 69 1 69 5.05e-25 93.6
Msa1447390 AT5G10140.4 62.857 70 25 1 1 69 1 70 3.34e-24 90.5
Msa1447390 AT5G10140.2 62.857 70 25 1 1 69 1 70 3.59e-24 89.7
Msa1447390 AT5G10140.1 62.857 70 25 1 1 69 1 70 4.00e-24 90.5
Msa1447390 AT5G10140.3 62.857 70 25 1 1 69 1 70 6.92e-24 89.7
Msa1447390 AT1G71692.1 58.571 70 28 1 1 69 1 70 1.35e-23 89.4
Msa1447390 AT5G20240.2 55.556 72 30 1 1 70 1 72 1.61e-23 87.8
Msa1447390 AT5G23260.3 59.155 71 27 1 1 69 1 71 2.01e-23 89.7
Msa1447390 AT5G23260.2 59.155 71 27 1 1 69 1 71 2.55e-23 89.7
Msa1447390 AT5G23260.1 59.155 71 27 1 1 69 17 87 3.21e-23 89.7
Msa1447390 AT5G23260.4 59.155 71 27 1 1 69 17 87 3.52e-23 89.7
Msa1447390 AT5G65070.4 57.746 71 29 1 1 70 1 71 4.90e-23 86.3
Msa1447390 AT5G20240.1 55.556 72 30 1 1 70 1 72 6.99e-23 87.4
Msa1447390 AT5G65070.1 57.746 71 29 1 1 70 1 71 9.36e-23 87.0
Msa1447390 AT5G65070.5 57.746 71 29 1 1 70 1 71 1.87e-22 86.7
Msa1447390 AT5G65070.2 57.746 71 29 1 1 70 1 71 2.07e-22 87.0
Msa1447390 AT2G22540.2 56.579 76 28 1 1 76 1 71 3.52e-22 86.3
Msa1447390 AT5G65050.2 53.521 71 32 1 1 70 1 71 4.02e-21 82.4
Msa1447390 AT5G65070.3 64.407 59 21 0 1 59 1 59 6.15e-21 83.2
Msa1447390 AT5G65050.1 53.521 71 32 1 1 70 1 71 6.26e-21 82.0
Msa1447390 AT5G65050.5 53.521 71 32 1 1 70 1 71 6.83e-21 82.0
Msa1447390 AT5G65050.3 53.521 71 32 1 1 70 1 71 7.57e-21 82.0
Msa1447390 AT5G65080.3 53.521 71 32 1 1 70 8 78 1.03e-19 79.0
Msa1447390 AT5G65060.3 46.512 86 41 2 1 81 1 86 1.18e-19 79.0
Msa1447390 AT5G65060.2 50.704 71 34 1 1 70 1 71 1.32e-19 78.6
Msa1447390 AT5G65060.1 50.704 71 34 1 1 70 1 71 1.55e-19 78.6
Msa1447390 AT1G01530.1 50.704 71 35 0 3 73 8 78 2.53e-19 79.0
Msa1447390 AT4G36590.1 56.716 67 29 0 3 69 8 74 3.27e-19 79.0
Msa1447390 AT1G31140.1 51.389 72 33 1 1 70 1 72 9.80e-19 77.0
Msa1447390 AT1G31140.2 51.389 72 33 1 1 70 1 72 1.04e-18 77.0
Msa1447390 AT5G65080.2 61.017 59 23 0 1 59 8 66 1.43e-18 76.3
Msa1447390 AT1G77950.3 51.429 70 33 1 1 69 1 70 1.94e-18 77.0
Msa1447390 AT1G77950.2 51.429 70 33 1 1 69 1 70 1.94e-18 77.0
Msa1447390 AT1G77950.1 51.429 70 33 1 1 69 1 70 1.94e-18 77.0
Msa1447390 AT1G77950.4 51.429 70 33 1 1 69 1 70 1.94e-18 77.0
Msa1447390 AT1G77980.1 57.143 70 29 1 1 69 1 70 2.77e-18 77.4
Msa1447390 AT1G22130.1 60.606 66 26 0 1 66 1 66 2.77e-18 77.4
Msa1447390 AT4G37435.1 51.515 66 32 0 1 66 1 66 7.27e-18 73.9
Msa1447390 AT1G77080.5 57.746 71 29 1 1 70 1 71 8.51e-18 73.6
Msa1447390 AT1G77080.11 57.746 71 29 1 1 70 1 71 8.76e-18 73.6
Msa1447390 AT2G24840.1 52.239 67 32 0 3 69 64 130 1.12e-17 75.1
Msa1447390 AT1G77080.4 57.746 71 29 1 1 70 1 71 1.36e-17 73.6
Msa1447390 AT1G77080.8 57.746 71 29 1 1 70 1 71 3.43e-17 73.2
Msa1447390 AT1G65360.1 45.070 71 39 0 3 73 8 78 7.51e-17 72.4
Msa1447390 AT2G34440.1 40.230 87 49 1 1 87 1 84 9.51e-17 70.9
Msa1447390 AT5G60440.1 50.746 67 33 0 3 69 8 74 1.26e-16 72.8
Msa1447390 AT3G66656.1 45.714 70 38 0 1 70 1 70 3.36e-16 69.7
Msa1447390 AT1G18750.3 49.296 71 34 1 1 69 1 71 5.84e-16 71.2
Msa1447390 AT1G18750.1 49.296 71 34 1 1 69 1 71 6.27e-16 71.2
Msa1447390 AT1G18750.4 49.296 71 34 1 1 69 1 71 8.24e-16 70.9
Msa1447390 AT1G77080.12 62.712 59 22 0 1 59 1 59 1.97e-15 67.0
Msa1447390 AT3G04100.1 39.189 74 45 0 5 78 17 90 3.29e-15 67.8
Msa1447390 AT2G03060.3 56.604 53 23 0 1 53 1 53 3.83e-15 68.9
Msa1447390 AT2G03060.7 56.604 53 23 0 1 53 1 53 3.83e-15 68.9
Msa1447390 AT2G03060.1 56.604 53 23 0 1 53 1 53 3.83e-15 68.9
Msa1447390 AT2G03060.2 56.604 53 23 0 1 53 1 53 4.11e-15 68.9
Msa1447390 AT1G77080.2 62.712 59 22 0 1 59 1 59 4.73e-15 67.0
Msa1447390 AT1G72350.1 43.750 80 43 1 3 82 44 121 5.08e-15 67.4
Msa1447390 AT1G29962.1 47.692 65 34 0 5 69 11 75 6.55e-15 66.2
Msa1447390 AT1G28460.1 49.231 65 33 0 5 69 11 75 8.29e-15 66.2
Msa1447390 AT1G47760.1 44.286 70 39 0 1 70 1 70 5.55e-14 63.9
Msa1447390 AT1G28450.1 46.154 65 35 0 5 69 11 75 3.31e-13 62.0
Msa1447390 AT1G69540.2 50.943 53 26 0 1 53 1 53 8.42e-12 59.7
Msa1447390 AT2G26320.1 45.070 71 37 1 1 69 17 87 1.49e-11 56.2
Msa1447390 AT1G69540.1 50.943 53 26 0 1 53 1 53 1.85e-11 58.5

Find 32 sgRNAs with CRISPR-Local

Find 263 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTGCTTATTATTCATCAAAA+TGG 0.252811 tig0031748:-6924 Msa1447390:exon
CTGACAAATAATTAATATTC+TGG 0.288192 tig0031748:+7095 None:intergenic
AAGAAATGGACTGCTTAAAA+AGG 0.324915 tig0031748:-6834 Msa1447390:CDS
CAGAATATTAATTATTTGTC+AGG 0.350759 tig0031748:-7094 Msa1447390:intron
AAGATAATACCTTGACATCT+AGG 0.389908 tig0031748:-7274 None:intergenic
ACTTTCTCAAAGAGAAGAAA+TGG 0.422858 tig0031748:-6848 Msa1447390:CDS
AAATTAAACATACCTTGAAC+TGG 0.446342 tig0031748:+6733 None:intergenic
CGAGATATGAACTCTCTTTG+AGG 0.457521 tig0031748:+6951 None:intergenic
TCTATGAGTTCTCCAGTTCA+AGG 0.460917 tig0031748:-6745 Msa1447390:intron
GAAACAGTGGAACGCTATCA+AGG 0.469619 tig0031748:-2593 Msa1447390:CDS
GGTAGGTTACATAGGGTGGA+TGG 0.469866 tig0031748:-7253 Msa1447390:five_prime_UTR
ACTCACTGCAATCAATCAAC+TGG 0.471886 tig0031748:-7227 Msa1447390:five_prime_UTR
CTCATCGTCTTCTCTACCAC+TGG 0.481417 tig0031748:-6773 Msa1447390:CDS
TCAAGGGAAAGTTAAGGAAC+TGG 0.481701 tig0031748:-2576 Msa1447390:CDS
GTAGGTTACATAGGGTGGAT+GGG 0.503921 tig0031748:-7252 Msa1447390:five_prime_UTR
GAGATATGAACTCTCTTTGA+GGG 0.517551 tig0031748:+6952 None:intergenic
AATATTCTGGAAGAAAAGAA+TGG 0.523738 tig0031748:+7108 None:intergenic
GACATCTAGGTAGGTTACAT+AGG 0.523759 tig0031748:-7261 Msa1447390:five_prime_UTR
TAGGTTACATAGGGTGGATG+GGG 0.548295 tig0031748:-7251 Msa1447390:five_prime_UTR
ACGCTATCAAGGGAAAGTTA+AGG 0.569325 tig0031748:-2582 Msa1447390:CDS
ACATCTAGGTAGGTTACATA+GGG 0.570043 tig0031748:-7260 Msa1447390:five_prime_UTR
TCTAGGTAGGTTACATAGGG+TGG 0.600786 tig0031748:-7257 Msa1447390:five_prime_UTR
TAATACCTTGACATCTAGGT+AGG 0.603612 tig0031748:-7270 None:intergenic
GAACTGGCTCTCAGCACCAA+AGG 0.605749 tig0031748:-2560 Msa1447390:CDS
ACAAAGCACTGAAAGTTCAA+AGG 0.613392 tig0031748:+6811 None:intergenic
AAACAGTGGAACGCTATCAA+GGG 0.614255 tig0031748:-2592 Msa1447390:CDS
TTATTCATCAAAATGGTGAG+AGG 0.636658 tig0031748:-6917 Msa1447390:exon
CTTCAGTATAAGCGAAACAG+TGG 0.637167 tig0031748:-2606 Msa1447390:intron
TCATCGTCTTCTCTACCACT+GGG 0.652904 tig0031748:-6772 Msa1447390:CDS
AGATATGAACTCTCTTTGAG+GGG 0.683636 tig0031748:+6953 None:intergenic
AGGAATCCAAGAAAATACAC+AGG 0.687928 tig0031748:-2540 Msa1447390:CDS
GAACTCATAGAGTTTCCCAG+TGG 0.782754 tig0031748:+6757 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTATTTTTAATTTAAATT+TGG - tig0031748:5377-5396 Msa1447390:intron 0.0%
!! AAATAAAAATAAAACTGATT+TGG - tig0031748:3334-3353 Msa1447390:intron 10.0%
!! CAATTATAATATAAGTATAT+GGG + tig0031748:4052-4071 None:intergenic 10.0%
!! TCAATTATAATATAAGTATA+TGG + tig0031748:4053-4072 None:intergenic 10.0%
!! AAACAATATATTAAAATGTT+AGG + tig0031748:5627-5646 None:intergenic 10.0%
!! TTATATAATAAAAAAGATCA+AGG - tig0031748:6187-6206 Msa1447390:intron 10.0%
!!! ACTATATTTTTTTTTTTTTG+AGG + tig0031748:6366-6385 None:intergenic 10.0%
!! TTTGTTAAATACTATAAAAT+CGG + tig0031748:6406-6425 None:intergenic 10.0%
!! ATTATATTATAAACTAGAAT+TGG + tig0031748:6510-6529 None:intergenic 10.0%
!! CAAAAAATAAAATTTAACAT+TGG + tig0031748:6909-6928 None:intergenic 10.0%
!!! AATTATAATATTTTGGAAAG+AGG + tig0031748:4079-4098 None:intergenic 15.0%
!! TTAAAGTAATATCAAAATCT+TGG - tig0031748:4440-4459 Msa1447390:intron 15.0%
!! TAAAGTAATATCAAAATCTT+GGG - tig0031748:4441-4460 Msa1447390:intron 15.0%
!! CAGAATTATATATAATTTAC+CGG + tig0031748:4664-4683 None:intergenic 15.0%
!! AAAAAATAGTAGATTGTAAT+TGG - tig0031748:5400-5419 Msa1447390:intron 15.0%
!! AAAAATAGTAGATTGTAATT+GGG - tig0031748:5401-5420 Msa1447390:intron 15.0%
!!! TATATTTTAATATAGTCTTC+AGG + tig0031748:5751-5770 None:intergenic 15.0%
!! CTGACAAATAATTAATATTC+TGG + tig0031748:2704-2723 None:intergenic 20.0%
!! CAGAATATTAATTATTTGTC+AGG - tig0031748:2702-2721 Msa1447390:intron 20.0%
!! AAGAGTGAATAATTAACATA+AGG - tig0031748:3415-3434 Msa1447390:intron 20.0%
!! AGAGTGAATAATTAACATAA+GGG - tig0031748:3416-3435 Msa1447390:intron 20.0%
!! TAATTAACATAAGGGTTTAA+TGG - tig0031748:3424-3443 Msa1447390:intron 20.0%
!! GATTAAATATCTTGCTAATT+AGG - tig0031748:3517-3536 Msa1447390:intron 20.0%
!!! CTTTTCCTATTTTTAATTTG+TGG - tig0031748:3609-3628 Msa1447390:intron 20.0%
!! TGAATCCACAAATTAAAAAT+AGG + tig0031748:3617-3636 None:intergenic 20.0%
!! TTGTATCATATTCTAAACTT+TGG + tig0031748:3650-3669 None:intergenic 20.0%
!!! TTGAATCAAACTTTTAGTAT+AGG - tig0031748:3704-3723 Msa1447390:intron 20.0%
!! TAATATAAGTATATGGGTTT+AGG + tig0031748:4046-4065 None:intergenic 20.0%
!!! GGTTGTCAATTATAATATTT+TGG + tig0031748:4086-4105 None:intergenic 20.0%
!! TATTATAATTGACAACCAAT+TGG - tig0031748:4089-4108 Msa1447390:intron 20.0%
!! ATTATAATTGACAACCAATT+GGG - tig0031748:4090-4109 Msa1447390:intron 20.0%
!! AAAATAGTACTAGTAATATC+TGG + tig0031748:4159-4178 None:intergenic 20.0%
!! AAAAACTATTTAAACCAACA+AGG + tig0031748:4271-4290 None:intergenic 20.0%
!! AAAGTAATATCAAAATCTTG+GGG - tig0031748:4442-4461 Msa1447390:intron 20.0%
!!! AATAGTTCTAATATTCGATT+TGG + tig0031748:4802-4821 None:intergenic 20.0%
!!! ACATATTATCTAGTAACTTT+TGG + tig0031748:6058-6077 None:intergenic 20.0%
!! AAAAGTTACTAGATAATATG+TGG - tig0031748:6057-6076 Msa1447390:intron 20.0%
!!! TTTTTTTTTGAGGTAGATAT+TGG + tig0031748:6356-6375 None:intergenic 20.0%
!! AATGTGTAGAAAAATTATCT+AGG - tig0031748:6537-6556 Msa1447390:intron 20.0%
!! GTTTAAATTACTGAAATGTT+AGG - tig0031748:6567-6586 Msa1447390:intron 20.0%
!!! CCTATTTTTTTAAATAGTGA+AGG + tig0031748:6749-6768 None:intergenic 20.0%
!! CCTTCACTATTTAAAAAAAT+AGG - tig0031748:6746-6765 Msa1447390:CDS 20.0%
!! TATATTATTATGGATCAGTT+TGG + tig0031748:6980-6999 None:intergenic 20.0%
!! ATAATAGCAAAACTTTTGCT+AGG - tig0031748:2631-2650 Msa1447390:intron 25.0%
!! TAATAGCAAAACTTTTGCTA+GGG - tig0031748:2632-2651 Msa1447390:intron 25.0%
!! AATATTCTGGAAGAAAAGAA+TGG + tig0031748:2691-2710 None:intergenic 25.0%
!! TTGTTTTCCAAAATAGAAAG+TGG + tig0031748:2749-2768 None:intergenic 25.0%
!! TTTGGAAAACAACATAGTTT+TGG - tig0031748:2757-2776 Msa1447390:intron 25.0%
! GTGCTTATTATTCATCAAAA+TGG - tig0031748:2872-2891 Msa1447390:intron 25.0%
! AAATTAAACATACCTTGAAC+TGG + tig0031748:3066-3085 None:intergenic 25.0%
!!! TAATTTTGAGAACCCTTTTA+TGG - tig0031748:3194-3213 Msa1447390:intron 25.0%
!! CAATGATCTTTTCCATAAAA+GGG + tig0031748:3209-3228 None:intergenic 25.0%
!! TCAATGATCTTTTCCATAAA+AGG + tig0031748:3210-3229 None:intergenic 25.0%
!!! TTAATGGATTATAGCATCAA+AGG - tig0031748:3440-3459 Msa1447390:intron 25.0%
!!! TTAATGGATTATAGCATCAA+AGG - tig0031748:3440-3459 Msa1447390:intron 25.0%
! TAAATATCTTGCTAATTAGG+TGG - tig0031748:3520-3539 Msa1447390:intron 25.0%
! AAATATCTTGCTAATTAGGT+GGG - tig0031748:3521-3540 Msa1447390:intron 25.0%
! ATTATAACTGTACTTTCTAG+AGG + tig0031748:3827-3846 None:intergenic 25.0%
!! AATGCAGTTTTCTTGATTAT+AGG - tig0031748:3876-3895 Msa1447390:intron 25.0%
! CAAATGCAATACATGTATTA+TGG + tig0031748:3927-3946 None:intergenic 25.0%
! TGAATATGGGTTTAGATTTA+GGG + tig0031748:4016-4035 None:intergenic 25.0%
! TTAATCTAAAGAATCCCAAT+TGG + tig0031748:4107-4126 None:intergenic 25.0%
!!! CTTAAAGTTTTTTTTGGTAG+TGG - tig0031748:4338-4357 Msa1447390:intron 25.0%
! ACAAATGCATAAAATATGCA+AGG + tig0031748:4382-4401 None:intergenic 25.0%
! TTTGATATTACTTTAAGCGA+GGG + tig0031748:4436-4455 None:intergenic 25.0%
!! TTTTGATATTACTTTAAGCG+AGG + tig0031748:4437-4456 None:intergenic 25.0%
! TTATGCATTGAAAATATCCT+GGG - tig0031748:4465-4484 Msa1447390:intron 25.0%
! TTGTATTTGTCAAACAATTG+TGG - tig0031748:4499-4518 Msa1447390:intron 25.0%
! TAGTAGTTACATATAAGAAC+TGG - tig0031748:4536-4555 Msa1447390:intron 25.0%
! ACAAACCCATTATAAAAGTT+CGG + tig0031748:4620-4639 None:intergenic 25.0%
! TAAACCGAATTTAATTGAAC+CGG - tig0031748:4642-4661 Msa1447390:intron 25.0%
!!! TTTACCGGTTCAATTAAATT+CGG + tig0031748:4649-4668 None:intergenic 25.0%
!! ATACATTTTGCCTTATGTAA+AGG + tig0031748:4710-4729 None:intergenic 25.0%
!!! TTCTAATATTCGATTTGGTA+GGG + tig0031748:4797-4816 None:intergenic 25.0%
!!! TTGTCCAAGTTCAATTTTTT+CGG - tig0031748:4901-4920 Msa1447390:intron 25.0%
!!! GCTATTTGTTTTTGTAACTA+GGG + tig0031748:4967-4986 None:intergenic 25.0%
!!! TGCTATTTGTTTTTGTAACT+AGG + tig0031748:4968-4987 None:intergenic 25.0%
!! AGAAATACCTTTCTTTTGTT+TGG - tig0031748:5109-5128 Msa1447390:intron 25.0%
!! TGTTTGGATTGACTTATTTA+CGG - tig0031748:5125-5144 Msa1447390:intron 25.0%
! CAATTGTTTGTCAAACTATT+CGG - tig0031748:5151-5170 Msa1447390:intron 25.0%
!!! ATAAGTTGTTTTCGTAAACT+TGG + tig0031748:5177-5196 None:intergenic 25.0%
!!! TAAGTTCTTTTTAGTAGTAG+AGG - tig0031748:5205-5224 Msa1447390:intron 25.0%
!! AATCATGAGTTAACTACTTT+TGG + tig0031748:5559-5578 None:intergenic 25.0%
!! GTGTGAATAAGTTGAAAATT+AGG - tig0031748:5671-5690 Msa1447390:intron 25.0%
! ATAATATGTGGAGATTTAGT+AGG - tig0031748:6069-6088 Msa1447390:intron 25.0%
!!! TATGCCATAGACTTATTTTT+AGG - tig0031748:6228-6247 Msa1447390:intron 25.0%
!! TGTCAAACTTTTAATGATGT+TGG + tig0031748:6264-6283 None:intergenic 25.0%
! AATCGGATCTTAAATGATAT+TGG + tig0031748:6389-6408 None:intergenic 25.0%
!! AATGAGTTTTCTTAATGCAT+TGG - tig0031748:6808-6827 Msa1447390:CDS 25.0%
!!! TCTTAATGCATTGGTTAAAA+AGG - tig0031748:6817-6836 Msa1447390:CDS 25.0%
! TCCATAATAATATATGCTGA+TGG - tig0031748:6986-7005 Msa1447390:five_prime_UTR 25.0%
! CCATAATAATATATGCTGAT+GGG - tig0031748:6987-7006 Msa1447390:five_prime_UTR 25.0%
!!! AATCCTTTTAATTTGTAGCT+CGG - tig0031748:7027-7046 Msa1447390:intron 25.0%
AAAAATAAGAAAGAGCAGAG+GGG + tig0031748:2603-2622 None:intergenic 30.0%
GAAAAATAAGAAAGAGCAGA+GGG + tig0031748:2604-2623 None:intergenic 30.0%
AGAAAAATAAGAAAGAGCAG+AGG + tig0031748:2605-2624 None:intergenic 30.0%
AATGAGATCTAGTTAACCAA+AGG + tig0031748:2798-2817 None:intergenic 30.0%
TTATTCATCAAAATGGTGAG+AGG - tig0031748:2879-2898 Msa1447390:intron 30.0%
! ATTTTCGATGCGTTTCATTT+GGG + tig0031748:2910-2929 None:intergenic 30.0%
ACTTTCTCAAAGAGAAGAAA+TGG - tig0031748:2948-2967 Msa1447390:intron 30.0%
!! AAGAAATGGACTGCTTAAAA+AGG - tig0031748:2962-2981 Msa1447390:intron 30.0%
GTATTGTGTACTTGATTACT+TGG - tig0031748:3140-3159 Msa1447390:intron 30.0%
! GATTTTCACTGATGCTATAA+AGG - tig0031748:3271-3290 Msa1447390:intron 30.0%
GGTTAAATATGCCAACTATA+AGG - tig0031748:3355-3374 Msa1447390:intron 30.0%
!!! GTAACACTACAGTTTTAGTT+AGG + tig0031748:3393-3412 None:intergenic 30.0%
! TCAAAGGTGAGTGATTTTAA+TGG - tig0031748:3456-3475 Msa1447390:intron 30.0%
! TAATTTGTGGATTCAAGAAG+TGG - tig0031748:3622-3641 Msa1447390:intron 30.0%
!!! CTTTTTTTATGTCAAGTGTG+TGG + tig0031748:3757-3776 None:intergenic 30.0%
CACACACTTGACATAAAAAA+AGG - tig0031748:3755-3774 Msa1447390:intron 30.0%
AAAAAAGGTAAATTTCCCCT+CGG - tig0031748:3770-3789 Msa1447390:intron 30.0%
ACAGTTATAATTCTGCTTGA+AGG - tig0031748:3836-3855 Msa1447390:intron 30.0%
GTGAATATGGGTTTAGATTT+AGG + tig0031748:4017-4036 None:intergenic 30.0%
! TTTAGGTTTAGGGTGAATAT+GGG + tig0031748:4029-4048 None:intergenic 30.0%
! AGTATATGGGTTTAGGTTTA+GGG + tig0031748:4039-4058 None:intergenic 30.0%
! AAGTATATGGGTTTAGGTTT+AGG + tig0031748:4040-4059 None:intergenic 30.0%
ATATCTGGTAAATCAAGAAC+TGG + tig0031748:4144-4163 None:intergenic 30.0%
TTGGAAAAAGTTAACCTTGT+TGG - tig0031748:4254-4273 Msa1447390:intron 30.0%
AAAAAAAACTTTAAGCGACG+GGG + tig0031748:4333-4352 None:intergenic 30.0%
CAAAAAAAACTTTAAGCGAC+GGG + tig0031748:4334-4353 None:intergenic 30.0%
CCAAAAAAAACTTTAAGCGA+CGG + tig0031748:4335-4354 None:intergenic 30.0%
ATGCATAAAATATGCAAGGT+CGG + tig0031748:4378-4397 None:intergenic 30.0%
TTGATATTACTTTAAGCGAG+GGG + tig0031748:4435-4454 None:intergenic 30.0%
GTTATGCATTGAAAATATCC+TGG - tig0031748:4464-4483 Msa1447390:intron 30.0%
TATGCATTGAAAATATCCTG+GGG - tig0031748:4466-4485 Msa1447390:intron 30.0%
TATTTGTCAAACAATTGTGG+AGG - tig0031748:4502-4521 Msa1447390:intron 30.0%
GTTACATATAAGAACTGGTT+CGG - tig0031748:4541-4560 Msa1447390:intron 30.0%
CAAACCCATTATAAAAGTTC+GGG + tig0031748:4619-4638 None:intergenic 30.0%
!! GTTCTAATATTCGATTTGGT+AGG + tig0031748:4798-4817 None:intergenic 30.0%
! TGGACAAATAGTTTGTGAAT+TGG + tig0031748:4888-4907 None:intergenic 30.0%
TCTACCGAAAAAATTGAACT+TGG + tig0031748:4908-4927 None:intergenic 30.0%
AAATATATGCATGTGAGTCA+TGG + tig0031748:5005-5024 None:intergenic 30.0%
ATGTCAATGCATGTTCAATT+AGG - tig0031748:5061-5080 Msa1447390:intron 30.0%
AGTCAATCCAAACAAAAGAA+AGG + tig0031748:5119-5138 None:intergenic 30.0%
!! ATGAGTTAACTACTTTTGGT+CGG + tig0031748:5555-5574 None:intergenic 30.0%
TCAACTTATTCACACCAAAA+GGG + tig0031748:5666-5685 None:intergenic 30.0%
TTCAACTTATTCACACCAAA+AGG + tig0031748:5667-5686 None:intergenic 30.0%
GGAACACATGTGATATATAT+CGG + tig0031748:5900-5919 None:intergenic 30.0%
! AGCACTTTTCTCTAAACTAA+GGG + tig0031748:5921-5940 None:intergenic 30.0%
! AAGCACTTTTCTCTAAACTA+AGG + tig0031748:5922-5941 None:intergenic 30.0%
CTTACCTAAATTGATCAAAC+CGG - tig0031748:6659-6678 Msa1447390:intron 30.0%
! CAATAAATAGACTTTTCCGT+TGG + tig0031748:6685-6704 None:intergenic 30.0%
CCCATCAGCATATATTATTA+TGG + tig0031748:6990-7009 None:intergenic 30.0%
TGAAGTATGCAACAAATGAA+TGG + tig0031748:7068-7087 None:intergenic 30.0%
!! GATATACTTGTTATTGTCCA+TGG - tig0031748:7159-7178 Msa1447390:five_prime_UTR 30.0%
! TGTATTTTCTTGGATTCCTT+TGG + tig0031748:7255-7274 None:intergenic 30.0%
ACATCTAGGTAGGTTACATA+GGG - tig0031748:2536-2555 Msa1447390:CDS 35.0%
! TTCAGCACCACTTTCTATTT+TGG - tig0031748:2739-2758 Msa1447390:intron 35.0%
AGATATGAACTCTCTTTGAG+GGG + tig0031748:2846-2865 None:intergenic 35.0%
GAGATATGAACTCTCTTTGA+GGG + tig0031748:2847-2866 None:intergenic 35.0%
! CATTTTCGATGCGTTTCATT+TGG + tig0031748:2911-2930 None:intergenic 35.0%
!! ACAAAGCACTGAAAGTTCAA+AGG + tig0031748:2988-3007 None:intergenic 35.0%
TTCACTGATGCTATAAAGGT+AGG - tig0031748:3275-3294 Msa1447390:intron 35.0%
GAAAGAAAATTTGACACGTG+TGG + tig0031748:3571-3590 None:intergenic 35.0%
AAAAAGGTAAATTTCCCCTC+GGG - tig0031748:3771-3790 Msa1447390:intron 35.0%
! ATAATTCTGCTTGAAGGCAT+TGG - tig0031748:3842-3861 Msa1447390:intron 35.0%
! GTTTAGGTTTAGGGTGAATA+TGG + tig0031748:4030-4049 None:intergenic 35.0%
! AAGCATTGTTTCTCTTTCCT+CGG - tig0031748:4216-4235 Msa1447390:intron 35.0%
!! CAAGGTTAACTTTTTCCAAC+AGG + tig0031748:4253-4272 None:intergenic 35.0%
AAAAAAACTTTAAGCGACGG+GGG + tig0031748:4332-4351 None:intergenic 35.0%
!!! CCGTCGCTTAAAGTTTTTTT+TGG - tig0031748:4332-4351 Msa1447390:intron 35.0%
!!! AAGTTTTTTTTGGTAGTGGC+CGG - tig0031748:4342-4361 Msa1447390:intron 35.0%
TGCATAAAATATGCAAGGTC+GGG + tig0031748:4377-4396 None:intergenic 35.0%
TGATATTACTTTAAGCGAGG+GGG + tig0031748:4434-4453 None:intergenic 35.0%
ATACAAAAAGAAAAGTCCCC+AGG + tig0031748:4485-4504 None:intergenic 35.0%
!! ATATAAGAACTGGTTCGGTT+CGG - tig0031748:4546-4565 Msa1447390:intron 35.0%
! ACTGACCCGAACTTTTATAA+TGG - tig0031748:4611-4630 Msa1447390:intron 35.0%
! CTGACCCGAACTTTTATAAT+GGG - tig0031748:4612-4631 Msa1447390:intron 35.0%
!! ATGTAAAGGTAGTTCTGGTT+CGG + tig0031748:4696-4715 None:intergenic 35.0%
ACCAGAACTACCTTTACATA+AGG - tig0031748:4697-4716 Msa1447390:intron 35.0%
TGAATTGGACTCAATCAGTT+AGG + tig0031748:4873-4892 None:intergenic 35.0%
GATAACTTTGTCTAGAGGAA+AGG - tig0031748:5528-5547 Msa1447390:intron 35.0%
! TTTTGTCAATTCACCCCTTT+TGG - tig0031748:5649-5668 Msa1447390:intron 35.0%
CAACTTATTCACACCAAAAG+GGG + tig0031748:5665-5684 None:intergenic 35.0%
ATTACGTTATGCAAGTGTCA+GGG + tig0031748:5705-5724 None:intergenic 35.0%
GCAGTTAAATTGAGACTTTG+TGG - tig0031748:5991-6010 Msa1447390:intron 35.0%
CGGACCTAAAAATAAGTCTA+TGG + tig0031748:6235-6254 None:intergenic 35.0%
TTTAATGATGTTGGACTCGT+CGG + tig0031748:6255-6274 None:intergenic 35.0%
!!! ATGCTGATGGGTTTTTTGAA+AGG - tig0031748:6999-7018 Msa1447390:intron 35.0%
!!! TGCTGATGGGTTTTTTGAAA+GGG - tig0031748:7000-7019 Msa1447390:intron 35.0%
CATCCGAGCTACAAATTAAA+AGG + tig0031748:7033-7052 None:intergenic 35.0%
!!! CTTTTAATTTGTAGCTCGGA+TGG - tig0031748:7031-7050 Msa1447390:intron 35.0%
!! ATACTTGTTATTGTCCATGG+TGG - tig0031748:7162-7181 Msa1447390:five_prime_UTR 35.0%
AGGAATCCAAGAAAATACAC+AGG - tig0031748:7256-7275 Msa1447390:five_prime_UTR 35.0%
GACATCTAGGTAGGTTACAT+AGG - tig0031748:2535-2554 Msa1447390:CDS 40.0%
ACTCACTGCAATCAATCAAC+TGG - tig0031748:2569-2588 Msa1447390:CDS 40.0%
ACCAAAGGTTAGAACACAAG+TGG + tig0031748:2783-2802 None:intergenic 40.0%
CGAGATATGAACTCTCTTTG+AGG + tig0031748:2848-2867 None:intergenic 40.0%
TCTATGAGTTCTCCAGTTCA+AGG - tig0031748:3051-3070 Msa1447390:intron 40.0%
! TTGCTAATTAGGTGGGTTTG+AGG - tig0031748:3528-3547 Msa1447390:intron 40.0%
ATGACAAATTTGAACCCGAG+GGG + tig0031748:3788-3807 None:intergenic 40.0%
CATGACAAATTTGAACCCGA+GGG + tig0031748:3789-3808 None:intergenic 40.0%
!!! AGTTTTTTTTGGTAGTGGCC+GGG - tig0031748:4343-4362 Msa1447390:intron 40.0%
GCATAAAATATGCAAGGTCG+GGG + tig0031748:4376-4395 None:intergenic 40.0%
!!! CGGGTCAGTTTTTTTGATTG+TGG + tig0031748:4600-4619 None:intergenic 40.0%
GCCTTATGTAAAGGTAGTTC+TGG + tig0031748:4701-4720 None:intergenic 40.0%
!! CTTTTTAGTAGTAGAGGCAG+TGG - tig0031748:5211-5230 Msa1447390:intron 40.0%
CCTCTAGACAAAGTTATCGT+AGG + tig0031748:5526-5545 None:intergenic 40.0%
CCTACGATAACTTTGTCTAG+AGG - tig0031748:5523-5542 Msa1447390:intron 40.0%
CATTACGTTATGCAAGTGTC+AGG + tig0031748:5706-5725 None:intergenic 40.0%
ATGTTGCACATGAAAAAGCG+TGG - tig0031748:5962-5981 Msa1447390:intron 40.0%
! TGTTGCACATGAAAAAGCGT+GGG - tig0031748:5963-5982 Msa1447390:intron 40.0%
TGTGGAGATTTAGTAGGTTG+AGG - tig0031748:6075-6094 Msa1447390:intron 40.0%
! GTGGAGATTTAGTAGGTTGA+GGG - tig0031748:6076-6095 Msa1447390:intron 40.0%
! TGGAGATTTAGTAGGTTGAG+GGG - tig0031748:6077-6096 Msa1447390:intron 40.0%
!! TTGGCCGGTTTGATCAATTT+AGG + tig0031748:6666-6685 None:intergenic 40.0%
AAATTGATCAAACCGGCCAA+CGG - tig0031748:6666-6685 Msa1447390:intron 40.0%
! AAATAGACTTTTCCGTTGGC+CGG + tig0031748:6681-6700 None:intergenic 40.0%
CTTCAGTATAAGCGAAACAG+TGG - tig0031748:7190-7209 Msa1447390:five_prime_UTR 40.0%
AAACAGTGGAACGCTATCAA+GGG - tig0031748:7204-7223 Msa1447390:five_prime_UTR 40.0%
ACGCTATCAAGGGAAAGTTA+AGG - tig0031748:7214-7233 Msa1447390:five_prime_UTR 40.0%
TCAAGGGAAAGTTAAGGAAC+TGG - tig0031748:7220-7239 Msa1447390:five_prime_UTR 40.0%
TCTAGGTAGGTTACATAGGG+TGG - tig0031748:2539-2558 Msa1447390:CDS 45.0%
GTAGGTTACATAGGGTGGAT+GGG - tig0031748:2544-2563 Msa1447390:CDS 45.0%
TAGGTTACATAGGGTGGATG+GGG - tig0031748:2545-2564 Msa1447390:CDS 45.0%
GCCACTTGTGTTCTAACCTT+TGG - tig0031748:2779-2798 Msa1447390:intron 45.0%
TCATCGTCTTCTCTACCACT+GGG - tig0031748:3024-3043 Msa1447390:intron 45.0%
GAACTCATAGAGTTTCCCAG+TGG + tig0031748:3042-3061 None:intergenic 45.0%
GATGCAGCAGACCTTATAGT+TGG + tig0031748:3369-3388 None:intergenic 45.0%
CCATGACAAATTTGAACCCG+AGG + tig0031748:3790-3809 None:intergenic 45.0%
CCTCGGGTTCAAATTTGTCA+TGG - tig0031748:3787-3806 Msa1447390:intron 45.0%
!!! GTTTTTTTTGGTAGTGGCCG+GGG - tig0031748:4344-4363 Msa1447390:intron 45.0%
GAGACTTTGTGGTGCAAACA+TGG - tig0031748:6002-6021 Msa1447390:intron 45.0%
TGGTGCATCACTTACACTTG+AGG - tig0031748:6022-6041 Msa1447390:intron 45.0%
GGTGCATCACTTACACTTGA+GGG - tig0031748:6023-6042 Msa1447390:intron 45.0%
GTGCATCACTTACACTTGAG+GGG - tig0031748:6024-6043 Msa1447390:intron 45.0%
TGCATCACTTACACTTGAGG+GGG - tig0031748:6025-6044 Msa1447390:intron 45.0%
! GGAGATTTAGTAGGTTGAGG+GGG - tig0031748:6078-6097 Msa1447390:intron 45.0%
ATCCAACCACCTCTACTCAT+GGG + tig0031748:6138-6157 None:intergenic 45.0%
! ATACTGAAGCATCTCCACCA+TGG + tig0031748:7179-7198 None:intergenic 45.0%
GAAACAGTGGAACGCTATCA+AGG - tig0031748:7203-7222 Msa1447390:five_prime_UTR 45.0%
!!! AATAGTTTTTTTTTTTTTTT+TGG - tig0031748:4281-4300 Msa1447390:intron 5.0%
!!! ATAGTTTTTTTTTTTTTTTT+GGG - tig0031748:4282-4301 Msa1447390:intron 5.0%
!! TAAAAAAAAAATTATAGTTT+AGG - tig0031748:5463-5482 Msa1447390:intron 5.0%
!! AATATTTGAAAATTATAATA+TGG + tig0031748:5811-5830 None:intergenic 5.0%
!!! TTTTTATTATATAACAAAAT+TGG + tig0031748:6181-6200 None:intergenic 5.0%
GGTAGGTTACATAGGGTGGA+TGG - tig0031748:2543-2562 Msa1447390:CDS 50.0%
CTCATCGTCTTCTCTACCAC+TGG - tig0031748:3023-3042 Msa1447390:intron 50.0%
GTGAGCTTAGCTCAGTTGGT+TGG + tig0031748:4406-4425 None:intergenic 50.0%
TCTCGTGAGCTTAGCTCAGT+TGG + tig0031748:4410-4429 None:intergenic 50.0%
GATCCAACCACCTCTACTCA+TGG + tig0031748:6139-6158 None:intergenic 50.0%
AGAGGTGGTTGGATCGAGTT+AGG - tig0031748:6144-6163 Msa1447390:intron 50.0%
AACAGGTTATGCTCGTGCCG+AGG + tig0031748:4236-4255 None:intergenic 55.0%
TCGGCACGAGCATAACCTGT+TGG - tig0031748:4235-4254 Msa1447390:intron 55.0%
GTTGCCAGGAACCTGGTTCA+GGG - tig0031748:5235-5254 Msa1447390:intron 55.0%
TTGCCAGGAACCTGGTTCAG+GGG - tig0031748:5236-5255 Msa1447390:intron 55.0%
AAGTGTGAACCCCCTGAACC+AGG + tig0031748:5249-5268 None:intergenic 55.0%
CAACCACCTCTACTCATGGG+CGG + tig0031748:6135-6154 None:intergenic 55.0%
! GAACTGGCTCTCAGCACCAA+AGG - tig0031748:7236-7255 Msa1447390:five_prime_UTR 55.0%
CAAGGTCGGGGTTCAAACCC+CGG + tig0031748:4364-4383 None:intergenic 60.0%
CGTTGCCAGGAACCTGGTTC+AGG - tig0031748:5234-5253 Msa1447390:intron 60.0%
TGCCAGGAACCTGGTTCAGG+GGG - tig0031748:5237-5256 Msa1447390:intron 60.0%
AACCCCCTGAACCAGGTTCC+TGG + tig0031748:5242-5261 None:intergenic 60.0%
CGCCCATGAGTAGAGGTGGT+TGG - tig0031748:6133-6152 Msa1447390:intron 60.0%
GTAGAGGCAGTGGCGTTGCC+AGG - tig0031748:5221-5240 Msa1447390:intron 65.0%
CAGTGGCGTTGCCAGGAACC+TGG - tig0031748:5228-5247 Msa1447390:intron 65.0%
! GGAGGCACATGTGTGCCAGG+GGG + tig0031748:6114-6133 None:intergenic 65.0%
! CGGAGGCACATGTGTGCCAG+GGG + tig0031748:6115-6134 None:intergenic 65.0%
! GCGGAGGCACATGTGTGCCA+GGG + tig0031748:6116-6135 None:intergenic 65.0%
GTGCCTCCGCCCATGAGTAG+AGG - tig0031748:6126-6145 Msa1447390:intron 65.0%
CCACCTCTACTCATGGGCGG+AGG + tig0031748:6132-6151 None:intergenic 65.0%
CCTCCGCCCATGAGTAGAGG+TGG - tig0031748:6129-6148 Msa1447390:intron 65.0%
GGGGGTTCAGCTCAACCCCC+TGG - tig0031748:6096-6115 Msa1447390:intron 70.0%
! GGCGGAGGCACATGTGTGCC+AGG + tig0031748:6117-6136 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
tig0031748 gene 2535 7283 2535 ID=Msa1447390;Name=Msa1447390
tig0031748 mRNA 2535 7283 2535 ID=Msa1447390-mRNA-1;Parent=Msa1447390;Name=Msa1447390-mRNA-1;_AED=0.08;_eAED=0.08;_QI=270|1|1|1|0.5|0.33|3|0|90
tig0031748 exon 2535 2622 2535 ID=Msa1447390-mRNA-1:exon:15896;Parent=Msa1447390-mRNA-1
tig0031748 exon 6746 7008 6746 ID=Msa1447390-mRNA-1:exon:15895;Parent=Msa1447390-mRNA-1
tig0031748 exon 7095 7283 7095 ID=Msa1447390-mRNA-1:exon:15894;Parent=Msa1447390-mRNA-1
tig0031748 five_prime_UTR 7095 7283 7095 ID=Msa1447390-mRNA-1:five_prime_utr;Parent=Msa1447390-mRNA-1
tig0031748 five_prime_UTR 6928 7008 6928 ID=Msa1447390-mRNA-1:five_prime_utr;Parent=Msa1447390-mRNA-1
tig0031748 CDS 6746 6927 6746 ID=Msa1447390-mRNA-1:cds;Parent=Msa1447390-mRNA-1
tig0031748 CDS 2535 2622 2535 ID=Msa1447390-mRNA-1:cds;Parent=Msa1447390-mRNA-1
Gene Sequence

>Msa1447390

ATGGTGAGAGGAAAAACCCAAATGAAACGCATCGAAAATGAGTCAAACAGACAAGTAACTTTCTCAAAGAGAAGAAATGGACTGCTTAAAAAGGCCTTTGAACTTTCAGTGCTTTGTGATGCTGAAGTAGCACTCATCGTCTTCTCTACCACTGGGAAACTCTATGAGTTCTCCAGTTCAAGTATAAGCGAAACAGTGGAACGCTATCAAGGGAAAGTTAAGGAACTGGCTCTCAGCACCAAAGGAATCCAAGAAAATACACAGGTTAGC
Protein sequence

>Msa1447390

MVRGKTQMKRIENESNRQVTFSKRRNGLLKKAFELSVLCDAEVALIVFSTTGKLYEFSSSSISETVERYQGKVKELALSTKGIQENTQVS