Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1452020 | sp|O23034|UBA5_ARATH | 75.701 | 214 | 48 | 2 | 1 | 210 | 1 | 214 | 3.63e-112 | 330 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1452020 | G7J3W6 | 94.907 | 216 | 5 | 1 | 1 | 210 | 1 | 216 | 2.29e-144 | 418 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1251410 | Msa1452020 | 0.812483 | 4.144111e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1452020 | MtrunA17_Chr3g0132251 | 94.907 | 216 | 5 | 1 | 1 | 210 | 1 | 216 | 4.41e-148 | 418 |
| Msa1452020 | MtrunA17_Chr2g0302261 | 93.056 | 216 | 9 | 1 | 1 | 210 | 1 | 216 | 2.25e-144 | 409 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1452020 | AT1G05350.1 | 75.701 | 214 | 48 | 2 | 1 | 210 | 1 | 214 | 3.69e-113 | 330 |
Find 106 sgRNAs with CRISPR-Local
Find 307 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTCACATGTTAAAATTATT+TGG | 0.155741 | tig0033658:+24795 | Msa1452020:intron |
| TGGAACAATATTAACTTTAT+TGG | 0.156956 | tig0033658:-23113 | Msa1452020:intergenic |
| TCCTCTTAGGTTGTAGCATC+TGG | 0.202498 | tig0033658:+23003 | Msa1452020:intron |
| ATATTAACTTTATTGGTAAA+AGG | 0.232606 | tig0033658:-23106 | Msa1452020:intergenic |
| GTTTCCGAGGATGCCGTTTC+TGG | 0.246371 | tig0033658:+22676 | Msa1452020:three_prime_UTR |
| CTAAAGTTCTTGTTAGGTTT+TGG | 0.268842 | tig0033658:+23312 | Msa1452020:three_prime_UTR |
| AGTTACAGTGTCGGAGAAAT+TGG | 0.269735 | tig0033658:+19559 | Msa1452020:five_prime_UTR |
| AGCATATTGCTGATCTTGTT+AGG | 0.273555 | tig0033658:+19948 | Msa1452020:intron |
| TTGTCATTGCTTGGAGCTTC+AGG | 0.275376 | tig0033658:-24566 | Msa1452020:intergenic |
| ACAAGAACTTTAGTGTGTTT+TGG | 0.276561 | tig0033658:-23302 | Msa1452020:intergenic |
| ATGCAATCTTCGCCCATAAA+AGG | 0.286639 | tig0033658:+24842 | Msa1452020:three_prime_UTR |
| TGGTCAAGTCTCTCCTTATT+TGG | 0.295386 | tig0033658:+23332 | Msa1452020:three_prime_UTR |
| CACATTCAGTTACTTATTCC+TGG | 0.301028 | tig0033658:+22700 | Msa1452020:three_prime_UTR |
| AGTTCATGGGTGAGACCTTC+AGG | 0.316177 | tig0033658:-24509 | Msa1452020:intergenic |
| TACAGTTTCAATTAAGCATT+TGG | 0.316473 | tig0033658:+19607 | Msa1452020:five_prime_UTR |
| TTTCATTGTAGTCGTCAATA+TGG | 0.322341 | tig0033658:-24818 | Msa1452020:intergenic |
| TGCTGCCGCGAAAGCAAAAT+TGG | 0.323417 | tig0033658:+23746 | Msa1452020:three_prime_UTR |
| AGTGCAATACTTACCAAATA+AGG | 0.330730 | tig0033658:-23345 | Msa1452020:intergenic |
| CAATCCGTACAGTCGGATTA+TGG | 0.335528 | tig0033658:+20117 | Msa1452020:CDS |
| GCATTTGAACATTGAGGGTT+TGG | 0.348977 | tig0033658:-23580 | Msa1452020:intergenic |
| AACACACTAAAGTTCTTGTT+AGG | 0.352881 | tig0033658:+23306 | Msa1452020:three_prime_UTR |
| TTCGCGGCAGCATCCCTTGT+TGG | 0.358047 | tig0033658:-23735 | Msa1452020:intergenic |
| TTTGGCTTCATTTGCATAGT+TGG | 0.362219 | tig0033658:-23562 | Msa1452020:intergenic |
| TCGAGAATTACGAACGGATA+AGG | 0.369218 | tig0033658:+20161 | Msa1452020:CDS |
| ATGATAACGAATGGAATATA+AGG | 0.370693 | tig0033658:+23808 | Msa1452020:three_prime_UTR |
| AGGAGGAGCGCATGCAAAAC+AGG | 0.372601 | tig0033658:-22731 | Msa1452020:intergenic |
| GGTACCAATACCAAAAGTTT+AGG | 0.375355 | tig0033658:+24036 | Msa1452020:three_prime_UTR |
| CGAGAATTACGAACGGATAA+GGG | 0.381220 | tig0033658:+20162 | Msa1452020:CDS |
| TGGAACTTGCAAACATGAAT+AGG | 0.394992 | tig0033658:+21278 | Msa1452020:CDS |
| ACGCCGCTACCTTGTTTATC+AGG | 0.395948 | tig0033658:-21987 | Msa1452020:intergenic |
| GAAGTAAATACCTAAACTTT+TGG | 0.396048 | tig0033658:-24046 | Msa1452020:intergenic |
| TTAAAATTTACCATGGTAGT+TGG | 0.396645 | tig0033658:-23075 | Msa1452020:intergenic |
| ATTTGAGTGCTCACTTGATC+AGG | 0.406505 | tig0033658:-21313 | Msa1452020:intergenic |
| TTGGCTTCATTTGCATAGTT+GGG | 0.409034 | tig0033658:-23561 | Msa1452020:intergenic |
| GCATATTGCTGATCTTGTTA+GGG | 0.423394 | tig0033658:+19949 | Msa1452020:intron |
| CCTCTTAGGTTGTAGCATCT+GGG | 0.433455 | tig0033658:+23004 | Msa1452020:intron |
| CATCCGCAGTAGGAAGTTCA+TGG | 0.443784 | tig0033658:-24523 | Msa1452020:intergenic |
| GAGATTAGTACATACAACTA+TGG | 0.449162 | tig0033658:-20197 | Msa1452020:intergenic |
| CTTATGTAATCACAGGGAAT+AGG | 0.450628 | tig0033658:+21178 | Msa1452020:intron |
| TGTTCACCGCACAAAAGTTA+AGG | 0.457928 | tig0033658:+19979 | Msa1452020:CDS |
| TGCAGTTTGCTTAAAATGAC+AGG | 0.458241 | tig0033658:+23600 | Msa1452020:three_prime_UTR |
| GCAAAACAGGCCGTTTCTCC+AGG | 0.458848 | tig0033658:-22718 | Msa1452020:intergenic |
| CACCTGACTCCATCTATGTA+TGG | 0.460550 | tig0033658:-22205 | Msa1452020:intergenic |
| GATTATGGCGCTTCAGAGAA+TGG | 0.465089 | tig0033658:+20132 | Msa1452020:CDS |
| CAAACTGCATTTGAACATTG+AGG | 0.468450 | tig0033658:-23586 | Msa1452020:intergenic |
| GCATCGCGAAGAGATGGATC+TGG | 0.478903 | tig0033658:-19712 | Msa1452020:intergenic |
| GTTACTTATTCCTGGAGAAA+CGG | 0.484271 | tig0033658:+22708 | Msa1452020:three_prime_UTR |
| AAACTGCATTTGAACATTGA+GGG | 0.487234 | tig0033658:-23585 | Msa1452020:intergenic |
| AGGTCATCATTGTCATTGCT+TGG | 0.493955 | tig0033658:-24575 | Msa1452020:intergenic |
| CTTACCTCAAGCACAACATC+AGG | 0.497931 | tig0033658:-21778 | Msa1452020:intergenic |
| GTGACCAGAAACGGCATCCT+CGG | 0.498837 | tig0033658:-22680 | Msa1452020:intergenic |
| TGAACTGAGCCATACATAGA+TGG | 0.498887 | tig0033658:+22196 | Msa1452020:exon |
| AGCAAGAATGGCTGTTAACC+AGG | 0.499391 | tig0033658:+22043 | Msa1452020:CDS |
| TTGGAGCTTCAGGAGTGACT+AGG | 0.499692 | tig0033658:-24556 | Msa1452020:intergenic |
| TAACTGAATGTGACCAGAAA+CGG | 0.502172 | tig0033658:-22689 | Msa1452020:intergenic |
| AGTGGACCATCTTCAACTAA+TGG | 0.505539 | tig0033658:-23780 | Msa1452020:intergenic |
| TCACAGGGAATAGGTGGTGT+AGG | 0.505634 | tig0033658:+21187 | Msa1452020:intron |
| AGCCATACATAGATGGAGTC+AGG | 0.508506 | tig0033658:+22203 | Msa1452020:exon |
| ATTATGGCGCTTCAGAGAAT+GGG | 0.513151 | tig0033658:+20133 | Msa1452020:CDS |
| TCTTCGCGATGCCTTCCATA+AGG | 0.517666 | tig0033658:+19723 | Msa1452020:CDS |
| TTGATTGAGAGATTGAAGAT+CGG | 0.528108 | tig0033658:-19683 | Msa1452020:intergenic |
| TGGAAGGCATCGCGAAGAGA+TGG | 0.537472 | tig0033658:-19718 | Msa1452020:intergenic |
| CTGAATATCACAACAGTGGA+TGG | 0.541895 | tig0033658:+21921 | Msa1452020:CDS |
| AGCGTACACTCAAGCGTGAA+GGG | 0.545932 | tig0033658:+23034 | Msa1452020:three_prime_UTR |
| AGATAATTACGAAGCAAGAA+TGG | 0.547251 | tig0033658:+22031 | Msa1452020:CDS |
| ATGCTAACAAGATGTGGTAT+TGG | 0.549949 | tig0033658:+21226 | Msa1452020:CDS |
| AGTACATACAACTATGGCTA+TGG | 0.561645 | tig0033658:-20191 | Msa1452020:intergenic |
| TGCCGCGAAAGCAAAATTGG+AGG | 0.562462 | tig0033658:+23749 | Msa1452020:three_prime_UTR |
| AAAGCAAAATTGGAGGCTGA+AGG | 0.572027 | tig0033658:+23756 | Msa1452020:three_prime_UTR |
| CACTGCACGATGATAACGAA+TGG | 0.573661 | tig0033658:+23799 | Msa1452020:three_prime_UTR |
| GAAGGACCATTAGTTGAAGA+TGG | 0.574382 | tig0033658:+23774 | Msa1452020:three_prime_UTR |
| AATTCAAACAGGTGTTTCCG+AGG | 0.578661 | tig0033658:+22663 | Msa1452020:intron |
| GTTGTATGATTATGACAAAG+TGG | 0.585959 | tig0033658:+21258 | Msa1452020:CDS |
| AGCGCCATAATCCGACTGTA+CGG | 0.587644 | tig0033658:-20121 | Msa1452020:intergenic |
| GTTACAGATGCCCTTCCTGA+AGG | 0.591789 | tig0033658:+24494 | Msa1452020:intron |
| TGCTACTATAGTTACAGTGT+CGG | 0.595213 | tig0033658:+19550 | Msa1452020:five_prime_UTR |
| TGATCAGGATATGAGTGTTG+AGG | 0.597935 | tig0033658:+20084 | Msa1452020:intron |
| ACATTCTTGCAAAGCCAACA+AGG | 0.600442 | tig0033658:+23721 | Msa1452020:three_prime_UTR |
| ATGTAATCACAGGGAATAGG+TGG | 0.600616 | tig0033658:+21181 | Msa1452020:intron |
| AAATCCTGATGTTGTGCTTG+AGG | 0.600789 | tig0033658:+21774 | Msa1452020:CDS |
| GAGCGTACACTCAAGCGTGA+AGG | 0.602385 | tig0033658:+23033 | Msa1452020:three_prime_UTR |
| TCAAATTCAACATTGAGAGA+TGG | 0.605445 | tig0033658:+19636 | Msa1452020:exon |
| CGCGAAGAGATGGATCTGGA+AGG | 0.607082 | tig0033658:-19708 | Msa1452020:intergenic |
| GCGAAGAGATGGATCTGGAA+GGG | 0.607645 | tig0033658:-19707 | Msa1452020:intergenic |
| ATCCGCAGTAGGAAGTTCAT+GGG | 0.609669 | tig0033658:-24522 | Msa1452020:intergenic |
| AGGTGGAATTACCTTATGGA+AGG | 0.613014 | tig0033658:-19734 | Msa1452020:intergenic |
| TATAGAATTAAAATTTACCA+TGG | 0.625061 | tig0033658:-23082 | Msa1452020:intergenic |
| CGTCCTGATAAACAAGGTAG+CGG | 0.627116 | tig0033658:+21984 | Msa1452020:CDS |
| CATGGGTGAGACCTTCAGGA+AGG | 0.630867 | tig0033658:-24505 | Msa1452020:intergenic |
| TAGACAGCAATCCGTACAGT+CGG | 0.634600 | tig0033658:+20110 | Msa1452020:CDS |
| ATGGGTGAGACCTTCAGGAA+GGG | 0.634709 | tig0033658:-24504 | Msa1452020:intergenic |
| GTTGCCTTCGTAGTTCGTCA+AGG | 0.640073 | tig0033658:-24595 | Msa1452020:intergenic |
| TTCTGAAATTCATCCGCAGT+AGG | 0.652387 | tig0033658:-24533 | Msa1452020:intergenic |
| CATTCGTTATCATCGTGCAG+TGG | 0.653722 | tig0033658:-23798 | Msa1452020:intergenic |
| GCTGAGATGCTAACAAGATG+TGG | 0.656177 | tig0033658:+21220 | Msa1452020:CDS |
| CACCCATGAACTTCCTACTG+CGG | 0.673339 | tig0033658:+24520 | Msa1452020:three_prime_UTR |
| GCGTACACTCAAGCGTGAAG+GGG | 0.678168 | tig0033658:+23035 | Msa1452020:three_prime_UTR |
| ATGACCTTGACGAACTACGA+AGG | 0.678833 | tig0033658:+24591 | Msa1452020:three_prime_UTR |
| TACACTGAATATCACAACAG+TGG | 0.682172 | tig0033658:+21917 | Msa1452020:CDS |
| CATTCTTGCAAAGCCAACAA+GGG | 0.682459 | tig0033658:+23722 | Msa1452020:three_prime_UTR |
| GTTGATGATTGTGAGCCAGA+TGG | 0.684872 | tig0033658:+24015 | Msa1452020:three_prime_UTR |
| TGCATCTTTACCAACTACCA+TGG | 0.694299 | tig0033658:+23065 | Msa1452020:three_prime_UTR |
| TCATTTCGTCCTGATAAACA+AGG | 0.695210 | tig0033658:+21978 | Msa1452020:CDS |
| TGATAAACAAGGTAGCGGCG+TGG | 0.703379 | tig0033658:+21989 | Msa1452020:CDS |
| TATCTACACAGCTTAAGACA+AGG | 0.708377 | tig0033658:-22013 | Msa1452020:intergenic |
| GAATTGTCGAGAATTACGAA+CGG | 0.742836 | tig0033658:+20155 | Msa1452020:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATCACAAATTTAATTCTA+TGG | - | tig0033658:20245-20264 | Msa1452020:intergenic | 15.0% |
| !!! | TTTTTTTTAATGTTTACTCT+TGG | + | tig0033658:20341-20360 | Msa1452020:intron | 15.0% |
| !! | ATTGAATTTCTAATTTAATC+TGG | + | tig0033658:20395-20414 | Msa1452020:intron | 15.0% |
| !! | TTGAATTTCTAATTTAATCT+GGG | + | tig0033658:20396-20415 | Msa1452020:intron | 15.0% |
| !!! | AAAAAATGTATACAACTTTT+TGG | - | tig0033658:21412-21431 | Msa1452020:intergenic | 15.0% |
| !! | AAAGATAAAATGCTTAAAAT+TGG | + | tig0033658:22240-22259 | Msa1452020:intron | 15.0% |
| !!! | ACTTCTTTTTTTTTAGTATT+CGG | + | tig0033658:22494-22513 | Msa1452020:intron | 15.0% |
| !!! | TCTGTTTTTTATTTGAAATT+GGG | + | tig0033658:22762-22781 | Msa1452020:intron | 15.0% |
| !! | TATAGAATTAAAATTTACCA+TGG | - | tig0033658:23085-23104 | Msa1452020:intergenic | 15.0% |
| !! | ATATTAACTTTATTGGTAAA+AGG | - | tig0033658:23109-23128 | Msa1452020:intergenic | 15.0% |
| !! | TCAACAAAAAAGAAAATAAA+TGG | - | tig0033658:23383-23402 | Msa1452020:intergenic | 15.0% |
| !!! | TTTTCTTTAACAATATTTGT+TGG | + | tig0033658:24369-24388 | Msa1452020:intron | 15.0% |
| !!! | ATTATCTACAGAAAATTTTT+TGG | + | tig0033658:24665-24684 | Msa1452020:three_prime_UTR | 15.0% |
| !! | ATTCACATGTTAAAATTATT+TGG | + | tig0033658:24795-24814 | Msa1452020:intron | 15.0% |
| !!! | AAAAAGAGTTTCTACTTTTT+AGG | - | tig0033658:20326-20345 | Msa1452020:intergenic | 20.0% |
| !! | AAAGCAACATACAAATTTAT+AGG | - | tig0033658:20523-20542 | Msa1452020:intergenic | 20.0% |
| !! | CTTTCGATTATGATTTAATT+TGG | + | tig0033658:20573-20592 | Msa1452020:intron | 20.0% |
| !! | ATAAACTATTAAGAAAGATC+CGG | + | tig0033658:20871-20890 | Msa1452020:intron | 20.0% |
| !! | ATATCTCCTTTATTAAATGT+GGG | - | tig0033658:21049-21068 | Msa1452020:intergenic | 20.0% |
| !! | TATATCTCCTTTATTAAATG+TGG | - | tig0033658:21050-21069 | Msa1452020:intergenic | 20.0% |
| !!! | TAGGTTTTTATTTCACATTT+TGG | + | tig0033658:21130-21149 | Msa1452020:intron | 20.0% |
| !! | AATTTAAAAGACATAATGCT+TGG | - | tig0033658:21550-21569 | Msa1452020:intergenic | 20.0% |
| !!! | CATTATGTCTTTTAAATTGA+AGG | + | tig0033658:21552-21571 | Msa1452020:intron | 20.0% |
| !!! | CAAAAAATACACTTTACTTT+TGG | - | tig0033658:21699-21718 | Msa1452020:intergenic | 20.0% |
| !!! | CAAAAGTAAAGTGTATTTTT+TGG | + | tig0033658:21697-21716 | Msa1452020:intron | 20.0% |
| !!! | ATTTTTCAAAGATGACATAA+AGG | - | tig0033658:21955-21974 | Msa1452020:intergenic | 20.0% |
| !! | TACGTTAAATAATAAATACC+TGG | - | tig0033658:22064-22083 | Msa1452020:intergenic | 20.0% |
| !!! | GTCTGTTTTTTATTTGAAAT+TGG | + | tig0033658:22761-22780 | Msa1452020:intron | 20.0% |
| !! | TGGAACAATATTAACTTTAT+TGG | - | tig0033658:23116-23135 | Msa1452020:intergenic | 20.0% |
| !!! | ATGGCAATTATTATTTTTAG+TGG | + | tig0033658:23166-23185 | Msa1452020:intron | 20.0% |
| !!! | TGAAACTATAAATGTTTTGT+AGG | + | tig0033658:23692-23711 | Msa1452020:intron | 20.0% |
| !!! | GAAACTATAAATGTTTTGTA+GGG | + | tig0033658:23693-23712 | Msa1452020:intron | 20.0% |
| !! | TTTCAGTTTACTTGTATAAA+GGG | - | tig0033658:24114-24133 | Msa1452020:intergenic | 20.0% |
| !! | ATTTCAGTTTACTTGTATAA+AGG | - | tig0033658:24115-24134 | Msa1452020:intergenic | 20.0% |
| !! | TTTATACAAGTAAACTGAAA+TGG | + | tig0033658:24114-24133 | Msa1452020:intron | 20.0% |
| !!! | TTTTTTGGTTTTAATGCTTT+AGG | + | tig0033658:24680-24699 | Msa1452020:three_prime_UTR | 20.0% |
| !!! | GTAGGTTTAACTTTAATTTT+TGG | + | tig0033658:24706-24725 | Msa1452020:three_prime_UTR | 20.0% |
| ! | TACAGTTTCAATTAAGCATT+TGG | + | tig0033658:19607-19626 | Msa1452020:five_prime_UTR | 25.0% |
| ! | ATAAAAAATGCATGCAGAAT+TGG | - | tig0033658:19792-19811 | Msa1452020:intergenic | 25.0% |
| ! | GTTTATTCTATAGTTTATCC+AGG | - | tig0033658:20857-20876 | Msa1452020:intergenic | 25.0% |
| !! | ATTTATACTTCAGAGCATTT+AGG | + | tig0033658:21008-21027 | Msa1452020:intron | 25.0% |
| ! | TTACTTCCCACATTTAATAA+AGG | + | tig0033658:21040-21059 | Msa1452020:intron | 25.0% |
| ! | GTAATTCTTATGTAATCACA+GGG | + | tig0033658:21172-21191 | Msa1452020:intron | 25.0% |
| ! | ACAAACATTCGAAATTTGAT+CGG | + | tig0033658:21436-21455 | Msa1452020:intron | 25.0% |
| ! | ATGTCAATAAAGATGGTTAA+GGG | - | tig0033658:22266-22285 | Msa1452020:intergenic | 25.0% |
| ! | ATTGTGAATTGTCTTAAAGA+AGG | - | tig0033658:22350-22369 | Msa1452020:intergenic | 25.0% |
| ! | ATGCGAAAAAAAATTCAAAC+AGG | + | tig0033658:22652-22671 | Msa1452020:intron | 25.0% |
| ! | ATAAAAAACAGACTTACAAG+AGG | - | tig0033658:22754-22773 | Msa1452020:intergenic | 25.0% |
| ! | ACAATAATATAGTCCACATA+TGG | - | tig0033658:22870-22889 | Msa1452020:intergenic | 25.0% |
| !! | ATGATTATGTTTTTCCTCTT+AGG | + | tig0033658:22990-23009 | Msa1452020:intron | 25.0% |
| ! | TTAAAATTTACCATGGTAGT+TGG | - | tig0033658:23078-23097 | Msa1452020:intergenic | 25.0% |
| ! | TGTAATAAGACTAAAAGCTT+TGG | - | tig0033658:23136-23155 | Msa1452020:intergenic | 25.0% |
| !!! | AATATGAGTACACTTTTTGA+TGG | + | tig0033658:23216-23235 | Msa1452020:intron | 25.0% |
| !!! | AAAATTTTGTTTGACTTTCC+AGG | + | tig0033658:23257-23276 | Msa1452020:intron | 25.0% |
| !!! | AAATTTTGTTTGACTTTCCA+GGG | + | tig0033658:23258-23277 | Msa1452020:intron | 25.0% |
| !! | ATCTTTTGAACAAAAAAGGA+AGG | - | tig0033658:23421-23440 | Msa1452020:intergenic | 25.0% |
| ! | TATTATATTCCTACGAATCA+TGG | - | tig0033658:23475-23494 | Msa1452020:intergenic | 25.0% |
| ! | TACATACAAGAAAACAGAAA+CGG | - | tig0033658:23514-23533 | Msa1452020:intergenic | 25.0% |
| !! | TTTCTGTTTTCTTGTATGTA+GGG | + | tig0033658:23514-23533 | Msa1452020:intron | 25.0% |
| ! | TTTATAGTTTCAATAACCAC+AGG | - | tig0033658:23684-23703 | Msa1452020:intergenic | 25.0% |
| !! | ATGATAACGAATGGAATATA+AGG | + | tig0033658:23808-23827 | Msa1452020:three_prime_UTR | 25.0% |
| ! | AACAAAACGAAGTATATGAA+CGG | - | tig0033658:23853-23872 | Msa1452020:intergenic | 25.0% |
| ! | GAGTTGTATGATATACTATA+TGG | + | tig0033658:23880-23899 | Msa1452020:intron | 25.0% |
| !! | AATACCTAAACTTTTGGTAT+TGG | - | tig0033658:24043-24062 | Msa1452020:intergenic | 25.0% |
| !! | GAAGTAAATACCTAAACTTT+TGG | - | tig0033658:24049-24068 | Msa1452020:intergenic | 25.0% |
| !!! | ACATTTACTTTTATTGCTGA+AGG | + | tig0033658:24400-24419 | Msa1452020:intron | 25.0% |
| !!! | CATTTACTTTTATTGCTGAA+GGG | + | tig0033658:24401-24420 | Msa1452020:intron | 25.0% |
| TCAAATTCAACATTGAGAGA+TGG | + | tig0033658:19636-19655 | Msa1452020:exon | 30.0% | |
| TTGATTGAGAGATTGAAGAT+CGG | - | tig0033658:19686-19705 | Msa1452020:intergenic | 30.0% | |
| TGAATAATTGAGAAGAAGAG+AGG | - | tig0033658:19757-19776 | Msa1452020:intergenic | 30.0% | |
| ! | TAAGTACCTTAACTTTTGTG+CGG | - | tig0033658:19988-20007 | Msa1452020:intergenic | 30.0% |
| GAGATTAGTACATACAACTA+TGG | - | tig0033658:20200-20219 | Msa1452020:intergenic | 30.0% | |
| ATTCTATGGCAAGAAAGTAA+AGG | - | tig0033658:20231-20250 | Msa1452020:intergenic | 30.0% | |
| !! | CGCTTAATTTATTTTCGTGT+TGG | - | tig0033658:20668-20687 | Msa1452020:intergenic | 30.0% |
| CACGAAAATAAATTAAGCGT+AGG | + | tig0033658:20669-20688 | Msa1452020:intron | 30.0% | |
| AACACCTATAGTAGAAAAGA+TGG | + | tig0033658:20757-20776 | Msa1452020:intron | 30.0% | |
| TAATGAGCTGGATAGAATTA+TGG | + | tig0033658:20898-20917 | Msa1452020:intron | 30.0% | |
| ! | TGGTATATGATAGAGCATTA+TGG | + | tig0033658:20918-20937 | Msa1452020:intron | 30.0% |
| TCATACACACAAGTTTAACT+AGG | - | tig0033658:20968-20987 | Msa1452020:intergenic | 30.0% | |
| !! | ATGCAGTTCTGACTATTTTA+GGG | + | tig0033658:21091-21110 | Msa1452020:intron | 30.0% |
| ! | TGGTAATAAGTTCTAACGTT+TGG | + | tig0033658:21150-21169 | Msa1452020:intron | 30.0% |
| GGTAATTCTTATGTAATCAC+AGG | + | tig0033658:21171-21190 | Msa1452020:intron | 30.0% | |
| GTTGTATGATTATGACAAAG+TGG | + | tig0033658:21258-21277 | Msa1452020:CDS | 30.0% | |
| TCTTGTCTTCAAAATAAGAG+CGG | + | tig0033658:21344-21363 | Msa1452020:intron | 30.0% | |
| CGAAATTTGATCGGATATTA+TGG | + | tig0033658:21445-21464 | Msa1452020:intron | 30.0% | |
| TGTGACAAATCTCACTTAAT+AGG | + | tig0033658:21482-21501 | Msa1452020:intron | 30.0% | |
| CACTTAATAGGAGAAGAATT+TGG | + | tig0033658:21494-21513 | Msa1452020:intron | 30.0% | |
| TTAATAGGAGAAGAATTTGG+TGG | + | tig0033658:21497-21516 | Msa1452020:intron | 30.0% | |
| GCTGACTACATTATATATAC+AGG | + | tig0033658:21670-21689 | Msa1452020:intron | 30.0% | |
| !!! | AAGTGTATTTTTTGGCTTTC+AGG | + | tig0033658:21705-21724 | Msa1452020:intron | 30.0% |
| !! | AAGCTCTAAATGAAGAGAAA+GGG | - | tig0033658:21897-21916 | Msa1452020:intergenic | 30.0% |
| !! | AAAGCTCTAAATGAAGAGAA+AGG | - | tig0033658:21898-21917 | Msa1452020:intergenic | 30.0% |
| AGATAATTACGAAGCAAGAA+TGG | + | tig0033658:22031-22050 | Msa1452020:CDS | 30.0% | |
| CATGTCAATAAAGATGGTTA+AGG | - | tig0033658:22267-22286 | Msa1452020:intergenic | 30.0% | |
| TATGCATTGCTAATTCTTGA+TGG | + | tig0033658:22588-22607 | Msa1452020:intron | 30.0% | |
| GTTAATTAAATCCAATCCTG+AGG | - | tig0033658:22814-22833 | Msa1452020:intergenic | 30.0% | |
| TTAACAGCAAACTATGTAAC+CGG | + | tig0033658:22896-22915 | Msa1452020:intron | 30.0% | |
| TGCATACTACATCTAACTTA+CGG | + | tig0033658:22923-22942 | Msa1452020:intron | 30.0% | |
| !!! | CTTTTTGATGGCTATTTCTA+TGG | + | tig0033658:23228-23247 | Msa1452020:intron | 30.0% |
| !! | AATTTTGTTTGACTTTCCAG+GGG | + | tig0033658:23259-23278 | Msa1452020:intron | 30.0% |
| ! | ACAAGAACTTTAGTGTGTTT+TGG | - | tig0033658:23305-23324 | Msa1452020:intergenic | 30.0% |
| AACACACTAAAGTTCTTGTT+AGG | + | tig0033658:23306-23325 | Msa1452020:three_prime_UTR | 30.0% | |
| ! | CTAAAGTTCTTGTTAGGTTT+TGG | + | tig0033658:23312-23331 | Msa1452020:three_prime_UTR | 30.0% |
| AGTGCAATACTTACCAAATA+AGG | - | tig0033658:23348-23367 | Msa1452020:intergenic | 30.0% | |
| ! | CGCAATCTTTTGAACAAAAA+AGG | - | tig0033658:23425-23444 | Msa1452020:intergenic | 30.0% |
| ! | GCGAAATTTATTCTTTGAAG+AGG | + | tig0033658:23442-23461 | Msa1452020:intron | 30.0% |
| ACATACAAGAAAACAGAAAC+GGG | - | tig0033658:23513-23532 | Msa1452020:intergenic | 30.0% | |
| ! | GTTTCTGTTTTCTTGTATGT+AGG | + | tig0033658:23513-23532 | Msa1452020:intron | 30.0% |
| AAACTGCATTTGAACATTGA+GGG | - | tig0033658:23588-23607 | Msa1452020:intergenic | 30.0% | |
| TTTGCTTAAAATGACAGGTA+AGG | + | tig0033658:23605-23624 | Msa1452020:intron | 30.0% | |
| TCATAAAATCATGTGAAACG+TGG | - | tig0033658:23644-23663 | Msa1452020:intergenic | 30.0% | |
| !! | TTTTTAGCCTTCACATTTAC+TGG | + | tig0033658:23967-23986 | Msa1452020:intron | 30.0% |
| TACCCTATTGATAAGCTTAA+TGG | + | tig0033658:24083-24102 | Msa1452020:intron | 30.0% | |
| ACCCTATTGATAAGCTTAAT+GGG | + | tig0033658:24084-24103 | Msa1452020:intron | 30.0% | |
| ACCCATTAAGCTTATCAATA+GGG | - | tig0033658:24088-24107 | Msa1452020:intergenic | 30.0% | |
| AACCCATTAAGCTTATCAAT+AGG | - | tig0033658:24089-24108 | Msa1452020:intergenic | 30.0% | |
| ATACAAGTAAACTGAAATGG+TGG | + | tig0033658:24117-24136 | Msa1452020:intron | 30.0% | |
| ! | ATTCTTTCTTTTGAGCTACA+TGG | + | tig0033658:24194-24213 | Msa1452020:intron | 30.0% |
| ! | TTCTTTCTTTTGAGCTACAT+GGG | + | tig0033658:24195-24214 | Msa1452020:intron | 30.0% |
| TTCCTTAAACATTTCCATGA+AGG | - | tig0033658:24252-24271 | Msa1452020:intergenic | 30.0% | |
| !! | TTTTAATGCTTTAGGCAAGT+AGG | + | tig0033658:24688-24707 | Msa1452020:three_prime_UTR | 30.0% |
| ! | TTTTGCTTCGTTTAGATTGT+TGG | + | tig0033658:24751-24770 | Msa1452020:intron | 30.0% |
| TTTCATTGTAGTCGTCAATA+TGG | - | tig0033658:24821-24840 | Msa1452020:intergenic | 30.0% | |
| ! | AATTGCATGCTTCCTTTTAT+GGG | - | tig0033658:24857-24876 | Msa1452020:intergenic | 30.0% |
| ! | AAATTGCATGCTTCCTTTTA+TGG | - | tig0033658:24858-24877 | Msa1452020:intergenic | 30.0% |
| TGCTACTATAGTTACAGTGT+CGG | + | tig0033658:19550-19569 | Msa1452020:five_prime_UTR | 35.0% | |
| ATAATTGAGAAGAAGAGAGG+TGG | - | tig0033658:19754-19773 | Msa1452020:intergenic | 35.0% | |
| ATGCATGCAGAATTGGATTA+TGG | - | tig0033658:19785-19804 | Msa1452020:intergenic | 35.0% | |
| AGCATATTGCTGATCTTGTT+AGG | + | tig0033658:19948-19967 | Msa1452020:intron | 35.0% | |
| GCATATTGCTGATCTTGTTA+GGG | + | tig0033658:19949-19968 | Msa1452020:intron | 35.0% | |
| ! | TTGTTGTTACTGTGTTGATC+AGG | + | tig0033658:20069-20088 | Msa1452020:intron | 35.0% |
| GAATTGTCGAGAATTACGAA+CGG | + | tig0033658:20155-20174 | Msa1452020:CDS | 35.0% | |
| AGTACATACAACTATGGCTA+TGG | - | tig0033658:20194-20213 | Msa1452020:intergenic | 35.0% | |
| CAAGAAAGTAAAGGTAGAAG+AGG | - | tig0033658:20222-20241 | Msa1452020:intergenic | 35.0% | |
| AAAGTAGAGCTATATGCCAT+TGG | + | tig0033658:20488-20507 | Msa1452020:intron | 35.0% | |
| TTATAGGTCCACATATCCAA+TGG | - | tig0033658:20507-20526 | Msa1452020:intergenic | 35.0% | |
| TTTGGTAGAGAAGACTTTGT+TGG | + | tig0033658:20591-20610 | Msa1452020:intron | 35.0% | |
| TATCCTTGGTCAAACTTGTA+TGG | + | tig0033658:20618-20637 | Msa1452020:intron | 35.0% | |
| ATCCTTGGTCAAACTTGTAT+GGG | + | tig0033658:20619-20638 | Msa1452020:intron | 35.0% | |
| GGATTTGTAGTAAGACTAGA+CGG | + | tig0033658:20690-20709 | Msa1452020:intron | 35.0% | |
| ACCTATAGTAGAAAAGATGG+TGG | + | tig0033658:20760-20779 | Msa1452020:intron | 35.0% | |
| ! | TCCACCATCTTTTCTACTAT+AGG | - | tig0033658:20764-20783 | Msa1452020:intergenic | 35.0% |
| AAACTTGTGTGTATGATTGC+TGG | + | tig0033658:20972-20991 | Msa1452020:intron | 35.0% | |
| AGATATAATCACACCAAGCT+AGG | + | tig0033658:21063-21082 | Msa1452020:intron | 35.0% | |
| !! | CATGCAGTTCTGACTATTTT+AGG | + | tig0033658:21090-21109 | Msa1452020:intron | 35.0% |
| ! | GGGTTTTCTACGAAATCTTT+AGG | + | tig0033658:21111-21130 | Msa1452020:intron | 35.0% |
| CTTATGTAATCACAGGGAAT+AGG | + | tig0033658:21178-21197 | Msa1452020:intron | 35.0% | |
| ATGCTAACAAGATGTGGTAT+TGG | + | tig0033658:21226-21245 | Msa1452020:CDS | 35.0% | |
| TGGAACTTGCAAACATGAAT+AGG | + | tig0033658:21278-21297 | Msa1452020:CDS | 35.0% | |
| CTTGTCTTCAAAATAAGAGC+GGG | + | tig0033658:21345-21364 | Msa1452020:intron | 35.0% | |
| AAAATAAGAGCGGGATATGA+TGG | + | tig0033658:21354-21373 | Msa1452020:intron | 35.0% | |
| TTTGTAACATGGTAGGCATA+TGG | - | tig0033658:21838-21857 | Msa1452020:intergenic | 35.0% | |
| ATTCGTCTTTGTAACATGGT+AGG | - | tig0033658:21845-21864 | Msa1452020:intergenic | 35.0% | |
| CTAGATTCGTCTTTGTAACA+TGG | - | tig0033658:21849-21868 | Msa1452020:intergenic | 35.0% | |
| TACACTGAATATCACAACAG+TGG | + | tig0033658:21917-21936 | Msa1452020:CDS | 35.0% | |
| TCATTTCGTCCTGATAAACA+AGG | + | tig0033658:21978-21997 | Msa1452020:CDS | 35.0% | |
| TATCTACACAGCTTAAGACA+AGG | - | tig0033658:22016-22035 | Msa1452020:intergenic | 35.0% | |
| TCTGCACATGTCAATAAAGA+TGG | - | tig0033658:22273-22292 | Msa1452020:intergenic | 35.0% | |
| TAACTGAATGTGACCAGAAA+CGG | - | tig0033658:22692-22711 | Msa1452020:intergenic | 35.0% | |
| CACATTCAGTTACTTATTCC+TGG | + | tig0033658:22700-22719 | Msa1452020:three_prime_UTR | 35.0% | |
| GTTACTTATTCCTGGAGAAA+CGG | + | tig0033658:22708-22727 | Msa1452020:three_prime_UTR | 35.0% | |
| AAAAACAGACTTACAAGAGG+AGG | - | tig0033658:22751-22770 | Msa1452020:intergenic | 35.0% | |
| GTATTGTTCACAATTGACAG+TGG | + | tig0033658:22784-22803 | Msa1452020:intron | 35.0% | |
| TTCAGAATGTCATCCATATG+TGG | + | tig0033658:22854-22873 | Msa1452020:intron | 35.0% | |
| TAGATGTAGTATGCATGAAC+CGG | - | tig0033658:22918-22937 | Msa1452020:intergenic | 35.0% | |
| ACATCTAACTTACGGACAAT+AGG | + | tig0033658:22931-22950 | Msa1452020:intron | 35.0% | |
| !! | ATTTTGTTTGACTTTCCAGG+GGG | + | tig0033658:23260-23279 | Msa1452020:intron | 35.0% |
| TATATTCCTACGAATCATGG+TGG | - | tig0033658:23472-23491 | Msa1452020:intergenic | 35.0% | |
| TTGGCTTCATTTGCATAGTT+GGG | - | tig0033658:23564-23583 | Msa1452020:intergenic | 35.0% | |
| ! | TTTGGCTTCATTTGCATAGT+TGG | - | tig0033658:23565-23584 | Msa1452020:intergenic | 35.0% |
| CAAACTGCATTTGAACATTG+AGG | - | tig0033658:23589-23608 | Msa1452020:intergenic | 35.0% | |
| ! | TGCAGTTTGCTTAAAATGAC+AGG | + | tig0033658:23600-23619 | Msa1452020:three_prime_UTR | 35.0% |
| TGAAGTCATGTATTATCCTG+TGG | + | tig0033658:23665-23684 | Msa1452020:intron | 35.0% | |
| AAAACCACCAGTAAATGTGA+AGG | - | tig0033658:23977-23996 | Msa1452020:intergenic | 35.0% | |
| GGTACCAATACCAAAAGTTT+AGG | + | tig0033658:24036-24055 | Msa1452020:three_prime_UTR | 35.0% | |
| !! | ACTCTAAAGCTCTTGATGTT+GGG | + | tig0033658:24168-24187 | Msa1452020:intron | 35.0% |
| CTCCTTCATGGAAATGTTTA+AGG | + | tig0033658:24247-24266 | Msa1452020:intron | 35.0% | |
| ! | CAATGAAGGTGCAATACAAA+AGG | - | tig0033658:24282-24301 | Msa1452020:intergenic | 35.0% |
| !! | GATGTTTGCTTTTGCAATGA+AGG | - | tig0033658:24296-24315 | Msa1452020:intergenic | 35.0% |
| TAACAGATTTGGGGATAAGA+GGG | - | tig0033658:24478-24497 | Msa1452020:intergenic | 35.0% | |
| ! | AGTTACAGTGTCGGAGAAAT+TGG | + | tig0033658:19559-19578 | Msa1452020:five_prime_UTR | 40.0% |
| AGGTGGAATTACCTTATGGA+AGG | - | tig0033658:19737-19756 | Msa1452020:intergenic | 40.0% | |
| AGAGAGGTGGAATTACCTTA+TGG | - | tig0033658:19741-19760 | Msa1452020:intergenic | 40.0% | |
| ! | TTAACTTTTGTGCGGTGAAC+AGG | - | tig0033658:19980-19999 | Msa1452020:intergenic | 40.0% |
| TGTTCACCGCACAAAAGTTA+AGG | + | tig0033658:19979-19998 | Msa1452020:CDS | 40.0% | |
| AGGTACTTACATTGTGCTTG+TGG | + | tig0033658:19999-20018 | Msa1452020:intron | 40.0% | |
| TACTTACATTGTGCTTGTGG+TGG | + | tig0033658:20002-20021 | Msa1452020:intron | 40.0% | |
| ! | TGATCAGGATATGAGTGTTG+AGG | + | tig0033658:20084-20103 | Msa1452020:intron | 40.0% |
| ATTATGGCGCTTCAGAGAAT+GGG | + | tig0033658:20133-20152 | Msa1452020:CDS | 40.0% | |
| TCGAGAATTACGAACGGATA+AGG | + | tig0033658:20161-20180 | Msa1452020:CDS | 40.0% | |
| CGAGAATTACGAACGGATAA+GGG | + | tig0033658:20162-20181 | Msa1452020:CDS | 40.0% | |
| AACTGTTCACTCACTATCAC+TGG | + | tig0033658:20287-20306 | Msa1452020:intron | 40.0% | |
| GCTATATGCCATTGGATATG+TGG | + | tig0033658:20496-20515 | Msa1452020:intron | 40.0% | |
| ACTTGTATGGGACATAGTGT+TGG | + | tig0033658:20631-20650 | Msa1452020:intron | 40.0% | |
| CTTGTATGGGACATAGTGTT+GGG | + | tig0033658:20632-20651 | Msa1452020:intron | 40.0% | |
| ACATTAGAGAGAGAGAGAGT+TGG | + | tig0033658:20731-20750 | Msa1452020:intron | 40.0% | |
| CATTAGAGAGAGAGAGAGTT+GGG | + | tig0033658:20732-20751 | Msa1452020:intron | 40.0% | |
| ATTAGAGAGAGAGAGAGTTG+GGG | + | tig0033658:20733-20752 | Msa1452020:intron | 40.0% | |
| !! | AGATGGTGGAAACTAGACTT+AGG | + | tig0033658:20774-20793 | Msa1452020:intron | 40.0% |
| CTCTTGATCTGATCTACATG+CGG | - | tig0033658:20806-20825 | Msa1452020:intergenic | 40.0% | |
| CTATCCAGCTCATTAATCTC+CGG | - | tig0033658:20893-20912 | Msa1452020:intergenic | 40.0% | |
| !! | CAAGTTTAACTAGGAGTACC+AGG | - | tig0033658:20959-20978 | Msa1452020:intergenic | 40.0% |
| ATGTAATCACAGGGAATAGG+TGG | + | tig0033658:21181-21200 | Msa1452020:intron | 40.0% | |
| ATTTGAGTGCTCACTTGATC+AGG | - | tig0033658:21316-21335 | Msa1452020:intergenic | 40.0% | |
| ! | ATAGGAGAAGAATTTGGTGG+TGG | + | tig0033658:21500-21519 | Msa1452020:intron | 40.0% |
| !!! | GTATTTTTTGGCTTTCAGGC+TGG | + | tig0033658:21709-21728 | Msa1452020:intron | 40.0% |
| AAATCCTGATGTTGTGCTTG+AGG | + | tig0033658:21774-21793 | Msa1452020:CDS | 40.0% | |
| CTGAATATCACAACAGTGGA+TGG | + | tig0033658:21921-21940 | Msa1452020:CDS | 40.0% | |
| TGAACTGAGCCATACATAGA+TGG | + | tig0033658:22196-22215 | Msa1452020:exon | 40.0% | |
| AGGTCTGGATACTTTCAAAG+AGG | - | tig0033658:22425-22444 | Msa1452020:intergenic | 40.0% | |
| TGCATCTGTGTACATTTAGC+TGG | + | tig0033658:22456-22475 | Msa1452020:intron | 40.0% | |
| TTCGGTACTATGACTATCTC+AGG | + | tig0033658:22512-22531 | Msa1452020:intron | 40.0% | |
| TCGGTACTATGACTATCTCA+GGG | + | tig0033658:22513-22532 | Msa1452020:intron | 40.0% | |
| TTGTGCTTGTGCATTCTACT+AGG | + | tig0033658:22563-22582 | Msa1452020:intron | 40.0% | |
| AATTCAAACAGGTGTTTCCG+AGG | + | tig0033658:22663-22682 | Msa1452020:intron | 40.0% | |
| TGCATCTTTACCAACTACCA+TGG | + | tig0033658:23065-23084 | Msa1452020:three_prime_UTR | 40.0% | |
| CTTATTACACTCGCATGACA+TGG | + | tig0033658:23147-23166 | Msa1452020:intron | 40.0% | |
| TGGTCAAGTCTCTCCTTATT+TGG | + | tig0033658:23332-23351 | Msa1452020:three_prime_UTR | 40.0% | |
| AGAAACGGGATGTCATCATA+AGG | - | tig0033658:23499-23518 | Msa1452020:intergenic | 40.0% | |
| GCATTTGAACATTGAGGGTT+TGG | - | tig0033658:23583-23602 | Msa1452020:intergenic | 40.0% | |
| ACATTCTTGCAAAGCCAACA+AGG | + | tig0033658:23721-23740 | Msa1452020:three_prime_UTR | 40.0% | |
| CATTCTTGCAAAGCCAACAA+GGG | + | tig0033658:23722-23741 | Msa1452020:three_prime_UTR | 40.0% | |
| AAAGCAAAATTGGAGGCTGA+AGG | + | tig0033658:23756-23775 | Msa1452020:three_prime_UTR | 40.0% | |
| GAAGGACCATTAGTTGAAGA+TGG | + | tig0033658:23774-23793 | Msa1452020:three_prime_UTR | 40.0% | |
| AGTGGACCATCTTCAACTAA+TGG | - | tig0033658:23783-23802 | Msa1452020:intergenic | 40.0% | |
| ! | TTAGCCTTCACATTTACTGG+TGG | + | tig0033658:23970-23989 | Msa1452020:intron | 40.0% |
| !!! | CTTTTGGTATTGGTACCATC+TGG | - | tig0033658:24033-24052 | Msa1452020:intergenic | 40.0% |
| !! | GACTCTAAAGCTCTTGATGT+TGG | + | tig0033658:24167-24186 | Msa1452020:intron | 40.0% |
| ! | TGTTTCATCTAGCTCCTTCA+TGG | + | tig0033658:24235-24254 | Msa1452020:intron | 40.0% |
| AACACGAAAGACACATGAAC+TGG | - | tig0033658:24339-24358 | Msa1452020:intergenic | 40.0% | |
| GTAACAGATTTGGGGATAAG+AGG | - | tig0033658:24479-24498 | Msa1452020:intergenic | 40.0% | |
| ! | AGGGCATCTGTAACAGATTT+GGG | - | tig0033658:24488-24507 | Msa1452020:intergenic | 40.0% |
| !! | AAGGGCATCTGTAACAGATT+TGG | - | tig0033658:24489-24508 | Msa1452020:intergenic | 40.0% |
| !! | TTCTGAAATTCATCCGCAGT+AGG | - | tig0033658:24536-24555 | Msa1452020:intergenic | 40.0% |
| AGGTCATCATTGTCATTGCT+TGG | - | tig0033658:24578-24597 | Msa1452020:intergenic | 40.0% | |
| ATGCAATCTTCGCCCATAAA+AGG | + | tig0033658:24842-24861 | Msa1452020:three_prime_UTR | 40.0% | |
| TAGACAGCAATCCGTACAGT+CGG | + | tig0033658:20110-20129 | Msa1452020:CDS | 45.0% | |
| CAATCCGTACAGTCGGATTA+TGG | + | tig0033658:20117-20136 | Msa1452020:CDS | 45.0% | |
| GATTATGGCGCTTCAGAGAA+TGG | + | tig0033658:20132-20151 | Msa1452020:CDS | 45.0% | |
| GAAAGACGATATCGCAGCAA+TGG | - | tig0033658:20558-20577 | Msa1452020:intergenic | 45.0% | |
| ACTTTGTTGGCGAGTATCCT+TGG | + | tig0033658:20604-20623 | Msa1452020:intron | 45.0% | |
| GTCCCATACAAGTTTGACCA+AGG | - | tig0033658:20624-20643 | Msa1452020:intergenic | 45.0% | |
| TGGTGGAAACTAGACTTAGG+TGG | + | tig0033658:20777-20796 | Msa1452020:intron | 45.0% | |
| AGTCAAACCAGTAGATGCAG+AGG | + | tig0033658:20827-20846 | Msa1452020:intron | 45.0% | |
| ! | AGGTTTTCCTCTGCATCTAC+TGG | - | tig0033658:20837-20856 | Msa1452020:intergenic | 45.0% |
| AGTAGATGCAGAGGAAAACC+TGG | + | tig0033658:20836-20855 | Msa1452020:intron | 45.0% | |
| AGATCCGGAGATTAATGAGC+TGG | + | tig0033658:20886-20905 | Msa1452020:intron | 45.0% | |
| TGGCATCGTTTGATAAAGCC+TGG | + | tig0033658:20938-20957 | Msa1452020:intron | 45.0% | |
| AACTGCATGTTCTCCTAGCT+TGG | - | tig0033658:21079-21098 | Msa1452020:intergenic | 45.0% | |
| GCTGAGATGCTAACAAGATG+TGG | + | tig0033658:21220-21239 | Msa1452020:CDS | 45.0% | |
| CTTACCTCAAGCACAACATC+AGG | - | tig0033658:21781-21800 | Msa1452020:intergenic | 45.0% | |
| GCATATGGAATGAGTCACAG+AGG | - | tig0033658:21823-21842 | Msa1452020:intergenic | 45.0% | |
| CGTCCTGATAAACAAGGTAG+CGG | + | tig0033658:21984-22003 | Msa1452020:CDS | 45.0% | |
| AGCAAGAATGGCTGTTAACC+AGG | + | tig0033658:22043-22062 | Msa1452020:CDS | 45.0% | |
| TAACTTCCTATGCACACTGC+AGG | + | tig0033658:22166-22185 | Msa1452020:intron | 45.0% | |
| AGCCATACATAGATGGAGTC+AGG | + | tig0033658:22203-22222 | Msa1452020:exon | 45.0% | |
| CACCTGACTCCATCTATGTA+TGG | - | tig0033658:22208-22227 | Msa1452020:intergenic | 45.0% | |
| AGTATCCAGACCTTGACAAG+TGG | + | tig0033658:22432-22451 | Msa1452020:intron | 45.0% | |
| ACAGATGCATCCACTTGTCA+AGG | - | tig0033658:22445-22464 | Msa1452020:intergenic | 45.0% | |
| AATTGACAGTGGAATGCCTC+AGG | + | tig0033658:22795-22814 | Msa1452020:intron | 45.0% | |
| ! | TCCTCTTAGGTTGTAGCATC+TGG | + | tig0033658:23003-23022 | Msa1452020:intron | 45.0% |
| ! | CCTCTTAGGTTGTAGCATCT+GGG | + | tig0033658:23004-23023 | Msa1452020:intron | 45.0% |
| ! | AGCCTCCAATTTTGCTTTCG+CGG | - | tig0033658:23754-23773 | Msa1452020:intergenic | 45.0% |
| CATTCGTTATCATCGTGCAG+TGG | - | tig0033658:23801-23820 | Msa1452020:intergenic | 45.0% | |
| ! | CACTGCACGATGATAACGAA+TGG | + | tig0033658:23799-23818 | Msa1452020:three_prime_UTR | 45.0% |
| !! | GTTGATGATTGTGAGCCAGA+TGG | + | tig0033658:24015-24034 | Msa1452020:three_prime_UTR | 45.0% |
| ! | TCTTTTGAGCTACATGGGCT+TGG | + | tig0033658:24200-24219 | Msa1452020:intron | 45.0% |
| GGGCATCTGTAACAGATTTG+GGG | - | tig0033658:24487-24506 | Msa1452020:intergenic | 45.0% | |
| ATCCGCAGTAGGAAGTTCAT+GGG | - | tig0033658:24525-24544 | Msa1452020:intergenic | 45.0% | |
| TTGTCATTGCTTGGAGCTTC+AGG | - | tig0033658:24569-24588 | Msa1452020:intergenic | 45.0% | |
| ATGACCTTGACGAACTACGA+AGG | + | tig0033658:24591-24610 | Msa1452020:three_prime_UTR | 45.0% | |
| !!! | AAATCTTATTTATTTATTTA+TGG | + | tig0033658:20448-20467 | Msa1452020:intron | 5.0% |
| GCGAAGAGATGGATCTGGAA+GGG | - | tig0033658:19710-19729 | Msa1452020:intergenic | 50.0% | |
| TCTTCGCGATGCCTTCCATA+AGG | + | tig0033658:19723-19742 | Msa1452020:CDS | 50.0% | |
| AGCGCCATAATCCGACTGTA+CGG | - | tig0033658:20124-20143 | Msa1452020:intergenic | 50.0% | |
| TCACAGGGAATAGGTGGTGT+AGG | + | tig0033658:21187-21206 | Msa1452020:intron | 50.0% | |
| ! | ACGCCGCTACCTTGTTTATC+AGG | - | tig0033658:21990-22009 | Msa1452020:intergenic | 50.0% |
| ! | TGATAAACAAGGTAGCGGCG+TGG | + | tig0033658:21989-22008 | Msa1452020:CDS | 50.0% |
| TACAAGCCTGCAGTGTGCAT+AGG | - | tig0033658:22175-22194 | Msa1452020:intergenic | 50.0% | |
| TGCATCCACTTGTCAAGGTC+TGG | - | tig0033658:22440-22459 | Msa1452020:intergenic | 50.0% | |
| ACAGTGGAATGCCTCAGGAT+TGG | + | tig0033658:22800-22819 | Msa1452020:intron | 50.0% | |
| CCCAGATGCTACAACCTAAG+AGG | - | tig0033658:23007-23026 | Msa1452020:intergenic | 50.0% | |
| AGCGTACACTCAAGCGTGAA+GGG | + | tig0033658:23034-23053 | Msa1452020:three_prime_UTR | 50.0% | |
| ACTTTCCAGGGGGTTATTGC+TGG | + | tig0033658:23270-23289 | Msa1452020:intron | 50.0% | |
| CTTTCCAGGGGGTTATTGCT+GGG | + | tig0033658:23271-23290 | Msa1452020:intron | 50.0% | |
| GGAAGACCACCATGATTCGT+AGG | + | tig0033658:23463-23482 | Msa1452020:intron | 50.0% | |
| TGCTGCCGCGAAAGCAAAAT+TGG | + | tig0033658:23746-23765 | Msa1452020:three_prime_UTR | 50.0% | |
| TGCCGCGAAAGCAAAATTGG+AGG | + | tig0033658:23749-23768 | Msa1452020:three_prime_UTR | 50.0% | |
| GTTACAGATGCCCTTCCTGA+AGG | + | tig0033658:24494-24513 | Msa1452020:intron | 50.0% | |
| ATGGGTGAGACCTTCAGGAA+GGG | - | tig0033658:24507-24526 | Msa1452020:intergenic | 50.0% | |
| AGTTCATGGGTGAGACCTTC+AGG | - | tig0033658:24512-24531 | Msa1452020:intergenic | 50.0% | |
| CACCCATGAACTTCCTACTG+CGG | + | tig0033658:24520-24539 | Msa1452020:three_prime_UTR | 50.0% | |
| CATCCGCAGTAGGAAGTTCA+TGG | - | tig0033658:24526-24545 | Msa1452020:intergenic | 50.0% | |
| TTGGAGCTTCAGGAGTGACT+AGG | - | tig0033658:24559-24578 | Msa1452020:intergenic | 50.0% | |
| GTTGCCTTCGTAGTTCGTCA+AGG | - | tig0033658:24598-24617 | Msa1452020:intergenic | 50.0% | |
| CGCGAAGAGATGGATCTGGA+AGG | - | tig0033658:19711-19730 | Msa1452020:intergenic | 55.0% | |
| GCATCGCGAAGAGATGGATC+TGG | - | tig0033658:19715-19734 | Msa1452020:intergenic | 55.0% | |
| !! | TGGAAGGCATCGCGAAGAGA+TGG | - | tig0033658:19721-19740 | Msa1452020:intergenic | 55.0% |
| ! | GTTTCCGAGGATGCCGTTTC+TGG | + | tig0033658:22676-22695 | Msa1452020:three_prime_UTR | 55.0% |
| GTGACCAGAAACGGCATCCT+CGG | - | tig0033658:22683-22702 | Msa1452020:intergenic | 55.0% | |
| GCAAAACAGGCCGTTTCTCC+AGG | - | tig0033658:22721-22740 | Msa1452020:intergenic | 55.0% | |
| ! | AGGAGGAGCGCATGCAAAAC+AGG | - | tig0033658:22734-22753 | Msa1452020:intergenic | 55.0% |
| GAGCGTACACTCAAGCGTGA+AGG | + | tig0033658:23033-23052 | Msa1452020:three_prime_UTR | 55.0% | |
| GCGTACACTCAAGCGTGAAG+GGG | + | tig0033658:23035-23054 | Msa1452020:three_prime_UTR | 55.0% | |
| CATGGGTGAGACCTTCAGGA+AGG | - | tig0033658:24508-24527 | Msa1452020:intergenic | 55.0% | |
| GAAGCCCAGCAATAACCCCC+TGG | - | tig0033658:23278-23297 | Msa1452020:intergenic | 60.0% | |
| TTCGCGGCAGCATCCCTTGT+TGG | - | tig0033658:23738-23757 | Msa1452020:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0033658 | gene | 19540 | 24892 | 19540 | ID=Msa1452020;Name=Msa1452020 |
| tig0033658 | mRNA | 19540 | 24892 | 19540 | ID=Msa1452020-mRNA-1;Parent=Msa1452020;Name=Msa1452020-mRNA-1;_AED=0.14;_eAED=0.14;_QI=115|0.92|0.93|1|0.71|0.66|15|869|210 |
| tig0033658 | exon | 19540 | 19744 | 19540 | ID=Msa1452020-mRNA-1:exon:18343;Parent=Msa1452020-mRNA-1 |
| tig0033658 | exon | 19950 | 20000 | 19950 | ID=Msa1452020-mRNA-1:exon:18344;Parent=Msa1452020-mRNA-1 |
| tig0033658 | exon | 20091 | 20204 | 20091 | ID=Msa1452020-mRNA-1:exon:18345;Parent=Msa1452020-mRNA-1 |
| tig0033658 | exon | 21193 | 21321 | 21193 | ID=Msa1452020-mRNA-1:exon:18346;Parent=Msa1452020-mRNA-1 |
| tig0033658 | exon | 21727 | 21795 | 21727 | ID=Msa1452020-mRNA-1:exon:18347;Parent=Msa1452020-mRNA-1 |
| tig0033658 | exon | 21912 | 22064 | 21912 | ID=Msa1452020-mRNA-1:exon:18348;Parent=Msa1452020-mRNA-1 |
| tig0033658 | exon | 22188 | 22224 | 22188 | ID=Msa1452020-mRNA-1:exon:18349;Parent=Msa1452020-mRNA-1 |
| tig0033658 | exon | 22674 | 22756 | 22674 | ID=Msa1452020-mRNA-1:exon:18350;Parent=Msa1452020-mRNA-1 |
| tig0033658 | exon | 23012 | 23121 | 23012 | ID=Msa1452020-mRNA-1:exon:18351;Parent=Msa1452020-mRNA-1 |
| tig0033658 | exon | 23279 | 23353 | 23279 | ID=Msa1452020-mRNA-1:exon:18352;Parent=Msa1452020-mRNA-1 |
| tig0033658 | exon | 23535 | 23621 | 23535 | ID=Msa1452020-mRNA-1:exon:18353;Parent=Msa1452020-mRNA-1 |
| tig0033658 | exon | 23714 | 23829 | 23714 | ID=Msa1452020-mRNA-1:exon:18354;Parent=Msa1452020-mRNA-1 |
| tig0033658 | exon | 24011 | 24057 | 24011 | ID=Msa1452020-mRNA-1:exon:18355;Parent=Msa1452020-mRNA-1 |
| tig0033658 | exon | 24501 | 24749 | 24501 | ID=Msa1452020-mRNA-1:exon:18356;Parent=Msa1452020-mRNA-1 |
| tig0033658 | exon | 24801 | 24892 | 24801 | ID=Msa1452020-mRNA-1:exon:18357;Parent=Msa1452020-mRNA-1 |
| tig0033658 | five_prime_UTR | 19540 | 19654 | 19540 | ID=Msa1452020-mRNA-1:five_prime_utr;Parent=Msa1452020-mRNA-1 |
| tig0033658 | CDS | 19655 | 19744 | 19655 | ID=Msa1452020-mRNA-1:cds;Parent=Msa1452020-mRNA-1 |
| tig0033658 | CDS | 19950 | 20000 | 19950 | ID=Msa1452020-mRNA-1:cds;Parent=Msa1452020-mRNA-1 |
| tig0033658 | CDS | 20091 | 20204 | 20091 | ID=Msa1452020-mRNA-1:cds;Parent=Msa1452020-mRNA-1 |
| tig0033658 | CDS | 21193 | 21321 | 21193 | ID=Msa1452020-mRNA-1:cds;Parent=Msa1452020-mRNA-1 |
| tig0033658 | CDS | 21727 | 21795 | 21727 | ID=Msa1452020-mRNA-1:cds;Parent=Msa1452020-mRNA-1 |
| tig0033658 | CDS | 21912 | 22064 | 21912 | ID=Msa1452020-mRNA-1:cds;Parent=Msa1452020-mRNA-1 |
| tig0033658 | CDS | 22188 | 22214 | 22188 | ID=Msa1452020-mRNA-1:cds;Parent=Msa1452020-mRNA-1 |
| tig0033658 | three_prime_UTR | 22215 | 22224 | 22215 | ID=Msa1452020-mRNA-1:three_prime_utr;Parent=Msa1452020-mRNA-1 |
| tig0033658 | three_prime_UTR | 22674 | 22756 | 22674 | ID=Msa1452020-mRNA-1:three_prime_utr;Parent=Msa1452020-mRNA-1 |
| tig0033658 | three_prime_UTR | 23012 | 23121 | 23012 | ID=Msa1452020-mRNA-1:three_prime_utr;Parent=Msa1452020-mRNA-1 |
| tig0033658 | three_prime_UTR | 23279 | 23353 | 23279 | ID=Msa1452020-mRNA-1:three_prime_utr;Parent=Msa1452020-mRNA-1 |
| tig0033658 | three_prime_UTR | 23535 | 23621 | 23535 | ID=Msa1452020-mRNA-1:three_prime_utr;Parent=Msa1452020-mRNA-1 |
| tig0033658 | three_prime_UTR | 23714 | 23829 | 23714 | ID=Msa1452020-mRNA-1:three_prime_utr;Parent=Msa1452020-mRNA-1 |
| tig0033658 | three_prime_UTR | 24011 | 24057 | 24011 | ID=Msa1452020-mRNA-1:three_prime_utr;Parent=Msa1452020-mRNA-1 |
| tig0033658 | three_prime_UTR | 24501 | 24749 | 24501 | ID=Msa1452020-mRNA-1:three_prime_utr;Parent=Msa1452020-mRNA-1 |
| tig0033658 | three_prime_UTR | 24801 | 24892 | 24801 | ID=Msa1452020-mRNA-1:three_prime_utr;Parent=Msa1452020-mRNA-1 |
| Gene Sequence |
| Protein sequence |
