AlfalfaGEDB | Msa1452220

M. sativa cultivar zhongmu-4 / Msa1452220

KEGG: K10875
GO: GO:0000003 GO:0000018 GO:0000280 GO:0000724 GO:0000725 GO:0003674 GO:0003676 GO:0003677 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006311 GO:0006325 GO:0006338 GO:0006342 GO:0006355 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007127 GO:0007131 GO:0008094 GO:0008150 GO:0008152 GO:0009314 GO:0009628 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010035 GO:0010038 GO:0010212 GO:0010332 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0015616 GO:0016043 GO:0016458 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019219 GO:0019222 GO:0022402 GO:0022414 GO:0030491 GO:0030702 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0033170 GO:0033554 GO:0034641 GO:0035822 GO:0035825 GO:0035861 GO:0040029 GO:0042221 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044237 GO:0044238 GO:0044260 GO:0044403 GO:0044419 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0045003 GO:0045814 GO:0045892 GO:0045934 GO:0046483 GO:0048285 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051052 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0051321 GO:0051701 GO:0051704 GO:0051716 GO:0060255 GO:0061806 GO:0061982 GO:0065007 GO:0070887 GO:0071214 GO:0071241 GO:0071248 GO:0071478 GO:0071479 GO:0071480 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0090734 GO:0097159 GO:0104004 GO:0140013 GO:0140097 GO:1901360 GO:1901363 GO:1902679 GO:1903046 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141
PFAM: PF00176.26

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1452220	sp\|Q0PCS3\|CHR25_ARATH	68.281	826	234	10	21	833	38	848	0.0	1135

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1452220	A0A072UN86	93.129	946	47	5	1	929	1	945	0.0	1779

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TFs/TRs:

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Gene ID	Type	Classification
Msa1452220	TR	SNF2

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa1360080	Msa1452220	0.830888	2.278963e-55	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1452220	MtrunA17_Chr5g0393461	93.129	946	47	5	1	929	1	945	0.0	1779
Msa1452220	MtrunA17_Chr4g0040301	30.280	535	305	12	190	670	6	526	6.63e-64	229
Msa1452220	MtrunA17_Chr5g0394201	33.753	477	265	12	202	672	391	822	7.32e-64	234
Msa1452220	MtrunA17_Chr1g0205891	32.704	477	271	12	202	672	404	836	2.39e-63	233
Msa1452220	MtrunA17_Chr1g0183681	28.961	587	324	13	202	743	419	957	7.68e-63	231
Msa1452220	MtrunA17_Chr8g0384531	29.811	530	311	14	202	700	412	911	5.33e-61	225
Msa1452220	MtrunA17_Chr5g0403921	30.105	475	295	7	202	671	212	654	5.94e-60	218
Msa1452220	MtrunA17_Chr4g0066741	32.427	478	259	15	202	671	216	637	6.75e-59	219
Msa1452220	MtrunA17_Chr4g0066651	32.008	503	289	14	202	695	1017	1475	9.99e-58	217
Msa1452220	MtrunA17_Chr5g0442141	30.196	510	302	14	202	697	645	1114	2.66e-57	215

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1452220	AT3G19210.1	68.281	826	234	10	21	833	38	848	0.0	1135
Msa1452220	AT3G19210.2	67.191	826	241	11	21	833	38	846	0.0	1109
Msa1452220	AT3G19210.3	68.568	754	210	9	21	762	38	776	0.0	1039
Msa1452220	AT1G08600.4	33.631	559	296	18	202	700	757	1300	1.60e-75	271
Msa1452220	AT1G08600.3	33.631	559	296	18	202	700	757	1300	1.60e-75	271
Msa1452220	AT1G08600.2	33.631	559	296	18	202	700	757	1300	1.60e-75	271
Msa1452220	AT1G08600.1	32.849	551	290	17	202	700	757	1279	6.56e-73	263
Msa1452220	AT2G18760.3	30.556	576	306	17	171	700	430	957	3.99e-68	248
Msa1452220	AT2G18760.4	30.556	576	306	17	171	700	371	898	4.05e-68	248
Msa1452220	AT2G18760.1	30.556	576	306	17	171	700	371	898	4.05e-68	248

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Find 219 sgRNAs with CRISPR-Local

Find 779 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATGCATCCATTGATATT+GGG	0.469154	tig0033735:-10478	None:intergenic
AAACCAAGTTGATGGAAAGC+TGG	0.556394	tig0033735:+19201	Msa1452220:CDS
AAACGACAGCGTCGCGGCAC+AGG	0.519079	tig0033735:+16914	Msa1452220:CDS
AAAGTTATGCAATCATCCAA+AGG	0.620113	tig0033735:+13176	Msa1452220:CDS
AAATATTACCTGATTAACTT+TGG	0.396814	tig0033735:-11734	None:intergenic
AAATTAGAATTAGAAGGAAG+AGG	0.504212	tig0033735:-10140	None:intergenic
AAATTGAACAAGTTTCACAA+CGG	0.700066	tig0033735:+9778	Msa1452220:CDS
AACAGGCCGCAGCAAGAGTT+TGG	0.360517	tig0033735:+16653	Msa1452220:intron
AACGAAAGTACCCTCACTTG+AGG	0.678598	tig0033735:+16241	Msa1452220:CDS
AAGAGTATATAGTAATGTGA+TGG	0.554919	tig0033735:-10634	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GATAAGGTTACCTTTGATTA+GGG	-	tig0033735:9823-9842	None:intergenic	30.0%
TCTGCATCAAATAAGTAGAA+AGG	-	tig0033735:10410-10429	None:intergenic	30.0%
TACTTATTTGATGCAGAGAA+GGG	+	tig0033735:10413-10432	Msa1452220:intron	30.0%
CAAAATGCATCCATTGATAT+TGG	-	tig0033735:10482-10501	None:intergenic	30.0%
TTATTTGTCAAGGTTTCGAT+GGG	+	tig0033735:10655-10674	Msa1452220:CDS	30.0%
ACTTGTAAAACTGTTAATCC+CGG	-	tig0033735:10817-10836	None:intergenic	30.0%
AAGTAGCTCGTAATTAAGAA+CGG	-	tig0033735:10871-10890	None:intergenic	30.0%
TAAACTTCTCTGAATGCATT+CGG	-	tig0033735:10958-10977	None:intergenic	30.0%
TGATCAGACAATAACAAACA+AGG	+	tig0033735:11033-11052	Msa1452220:CDS	30.0%
AAATCAGAAACACAAGAGAA+GGG	-	tig0033735:11600-11619	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
tig0033735	gene	9681	19671	9681	ID=Msa1452220;Name=Msa1452220
tig0033735	mRNA	9681	19671	9681	ID=Msa1452220-mRNA-1;Parent=Msa1452220;Name=Msa1452220-mRNA-1;_AED=0.15;_eAED=0.15;_QI=0\|0.89\|0.9\|1\|0.78\|0.9\|20\|80\|929
tig0033735	exon	9681	10194	9681	ID=Msa1452220-mRNA-1:exon:18465;Parent=Msa1452220-mRNA-1
tig0033735	exon	10429	10519	10429	ID=Msa1452220-mRNA-1:exon:18466;Parent=Msa1452220-mRNA-1
tig0033735	exon	10614	10854	10614	ID=Msa1452220-mRNA-1:exon:18467;Parent=Msa1452220-mRNA-1
tig0033735	exon	10929	11054	10929	ID=Msa1452220-mRNA-1:exon:18468;Parent=Msa1452220-mRNA-1
tig0033735	exon	11130	11186	11130	ID=Msa1452220-mRNA-1:exon:18469;Parent=Msa1452220-mRNA-1
tig0033735	exon	11285	11371	11285	ID=Msa1452220-mRNA-1:exon:18470;Parent=Msa1452220-mRNA-1
tig0033735	exon	11652	11747	11652	ID=Msa1452220-mRNA-1:exon:18471;Parent=Msa1452220-mRNA-1
tig0033735	exon	11952	12002	11952	ID=Msa1452220-mRNA-1:exon:18472;Parent=Msa1452220-mRNA-1
tig0033735	exon	12938	13012	12938	ID=Msa1452220-mRNA-1:exon:18473;Parent=Msa1452220-mRNA-1
tig0033735	exon	13111	13197	13111	ID=Msa1452220-mRNA-1:exon:18474;Parent=Msa1452220-mRNA-1
tig0033735	exon	13514	13605	13514	ID=Msa1452220-mRNA-1:exon:18475;Parent=Msa1452220-mRNA-1
tig0033735	exon	13688	13820	13688	ID=Msa1452220-mRNA-1:exon:18476;Parent=Msa1452220-mRNA-1
tig0033735	exon	16210	16329	16210	ID=Msa1452220-mRNA-1:exon:18477;Parent=Msa1452220-mRNA-1
tig0033735	exon	16439	16552	16439	ID=Msa1452220-mRNA-1:exon:18478;Parent=Msa1452220-mRNA-1
tig0033735	exon	16658	16741	16658	ID=Msa1452220-mRNA-1:exon:18479;Parent=Msa1452220-mRNA-1
tig0033735	exon	16858	16935	16858	ID=Msa1452220-mRNA-1:exon:18480;Parent=Msa1452220-mRNA-1
tig0033735	exon	17022	17080	17022	ID=Msa1452220-mRNA-1:exon:18481;Parent=Msa1452220-mRNA-1
tig0033735	exon	18538	18715	18538	ID=Msa1452220-mRNA-1:exon:18482;Parent=Msa1452220-mRNA-1
tig0033735	exon	18912	19010	18912	ID=Msa1452220-mRNA-1:exon:18483;Parent=Msa1452220-mRNA-1
tig0033735	exon	19184	19671	19184	ID=Msa1452220-mRNA-1:exon:18484;Parent=Msa1452220-mRNA-1
tig0033735	CDS	9681	10194	9681	ID=Msa1452220-mRNA-1:cds;Parent=Msa1452220-mRNA-1
tig0033735	CDS	10429	10519	10429	ID=Msa1452220-mRNA-1:cds;Parent=Msa1452220-mRNA-1
tig0033735	CDS	10614	10854	10614	ID=Msa1452220-mRNA-1:cds;Parent=Msa1452220-mRNA-1
tig0033735	CDS	10929	11054	10929	ID=Msa1452220-mRNA-1:cds;Parent=Msa1452220-mRNA-1
tig0033735	CDS	11130	11186	11130	ID=Msa1452220-mRNA-1:cds;Parent=Msa1452220-mRNA-1
tig0033735	CDS	11285	11371	11285	ID=Msa1452220-mRNA-1:cds;Parent=Msa1452220-mRNA-1
tig0033735	CDS	11652	11747	11652	ID=Msa1452220-mRNA-1:cds;Parent=Msa1452220-mRNA-1
tig0033735	CDS	11952	12002	11952	ID=Msa1452220-mRNA-1:cds;Parent=Msa1452220-mRNA-1
tig0033735	CDS	12938	13012	12938	ID=Msa1452220-mRNA-1:cds;Parent=Msa1452220-mRNA-1
tig0033735	CDS	13111	13197	13111	ID=Msa1452220-mRNA-1:cds;Parent=Msa1452220-mRNA-1
tig0033735	CDS	13514	13605	13514	ID=Msa1452220-mRNA-1:cds;Parent=Msa1452220-mRNA-1
tig0033735	CDS	13688	13820	13688	ID=Msa1452220-mRNA-1:cds;Parent=Msa1452220-mRNA-1
tig0033735	CDS	16210	16329	16210	ID=Msa1452220-mRNA-1:cds;Parent=Msa1452220-mRNA-1
tig0033735	CDS	16439	16552	16439	ID=Msa1452220-mRNA-1:cds;Parent=Msa1452220-mRNA-1
tig0033735	CDS	16658	16741	16658	ID=Msa1452220-mRNA-1:cds;Parent=Msa1452220-mRNA-1
tig0033735	CDS	16858	16935	16858	ID=Msa1452220-mRNA-1:cds;Parent=Msa1452220-mRNA-1
tig0033735	CDS	17022	17080	17022	ID=Msa1452220-mRNA-1:cds;Parent=Msa1452220-mRNA-1
tig0033735	CDS	18538	18715	18538	ID=Msa1452220-mRNA-1:cds;Parent=Msa1452220-mRNA-1
tig0033735	CDS	18912	19010	18912	ID=Msa1452220-mRNA-1:cds;Parent=Msa1452220-mRNA-1
tig0033735	CDS	19184	19591	19184	ID=Msa1452220-mRNA-1:cds;Parent=Msa1452220-mRNA-1
tig0033735	three_prime_UTR	19592	19671	19592	ID=Msa1452220-mRNA-1:three_prime_utr;Parent=Msa1452220-mRNA-1

Gene Sequence

>Msa1452220

ATGTTGGAGGAAGACGAAGACGTAGTGTTGTTGTCATCGTCGTCTTCATCTGATTCCGATGAAGAAGTTGAAGTGTCATCGTCTTCTTCTGATTCCGAAATTGAACAAGTTTCACAACGGAAATCTCAGAATGTAGAAGCCCTAATCAAAGGTAACCTTATCGTCAAGAGACAATCGTTGCTGCCGAGAGTATATTCCACCAATGGAGCTGCCGCTATTTGCAGAAAACCGTTTAAACCACCATCTGATGCTTACAACGATAACAGTAAACAAGATCTTGCTCGTAGGCTTTCTGCTCGCAAAAGGTTTGTCCCATGGGGTTCTACCACTCCTATTTCTATTCCCACCTCCGCCACACCTTTGACTGAGTTGGATTTGAATATCTCCGATCACAAAGAGGAGGCTGTGAAACCCTCGCCGCCCCTGCCCCCTGGAATTGATCCTCTAATACTCTGGCAACCTCTTCCTTCTAATTCTAATTTCACAACAATAGCCGTTGATCCTTTGCTTGTTCAGAAGGGGTTCAATTCATGTTTGATTGTGTCGCTGGACTATGTGAGACACCCAATATCAATGGATGCATTTTGGCAGATGATATGGGGTGGTTTGGGGAAGACACTGCAGTCCATCACATTACTATATACTCTTATTTGTCAAGGTTTCGATGGGAAGCCTATGGTTAGAAAGGCCATCATCGTCACTCCTACCAGTCTCGTTAGCAATTGGGAAGCAGAAATTAAGAAGTGGGTTGGAGATAGAGTTCGCCTTGTTGCTCTTTGTGAAACCACAAGACAAGATGTTATCTCCGGGATTAACAGTTTTACAAGTCCCCAAGGCAAATTCCAGGTGCTCGTTGTTTCATACGAGACATTCCGAATGCATTCAGAGAAGTTTAGCTCTAGTGGCTCCTGTGATCTCCTCATCTGTGACGAGGCTCACAGACTGAAAAATGATCAGACAATAACAAACAAGGCATTGGCTGCTCTCCCGTGTAAACGTAGAGTTTTGCTGTCAGGAACTCCTTTGCAGAATGACTTGGAAGAATTCTTTGCAATGGTTAATTTTACTAATCCTGGAATATTGGGCGGCATTGCACATTTTCGACGTTACTTTGAGGCTCCAATAATTTGCGGAAGAGAACCTGCTGCTACTGCAGAAGAGAAGAAACTCGGTGCTGAACGCACTGCAGAATTAAGTGCCAAAGTTAATCAGTTCATATTAAGAAGGACTAATGCGTTGCTATCAAATCACTTACCACCGAAGATAATTGAAGTTGTTTGCTGCAAGTTGACTCCGCTACAATCAGATCTATATAAACATTTTATACAGTCCAAAAATGTTAAACGGGCGATTACTGAAGAACTGAAGCAATCGAAGATTTTGGCCTACATTACGGCTCTAAAAAAGTTATGCAATCATCCAAAGCTCATATATGATACCATACGAAGTGGGAGCCCAGGAACTTCAGGTTTTGAGGACTGCATCCGATTCTTCCCTCCAAATATGTTATCTGGACGGTCTGGATCATGGACAGGAGGGGATGGAGGCTGGGTTGAGCTTTCCGGTAAAATGCAAGTCTTGGCAAGGTTACTTCATCAATTACGCCAGAGAACAAATGATCGCATTGTCCTTGTCTCAAACTATACTCAGACTCTTGATCTTTTTGCTCAATTGTGCCGGGAACGAAAGTACCCTCACTTGAGGCTTGATGGCGCTACATCAATCAGTAAAAGGCAAAAGTTGGTCAACTGCTTGAACGACCCGTCTAAGGACGAATTTGTTTTTCTCTTAAGCAGCAAGGCTGGTGGTTGTGGACTCAATTTGATTGGGGCAAATCGACTCGTCTTGTTTGATCCTGATTGGAATCCAGCAAATGATAAACAAGCCGCAGCAAGAGTTTGGAGGGATGGACAGAAGAAAAGAGTTTACATTTATAGATTTTTGAGTGCCGGAACAATAGAAGAAAAGGTCTACCAGCGTCAGATGGCAAAAGAAGGGCTGCAAAAGGTCATTCAGAGGGAGCAAAACGACAGCGTCGCGGCACAGGGTAACTTTCTCTCGACAGAGGATCTTCGCAATTTGTTTACTTTCGATGAGGACGTCAAGTCAGAGATTCATGAAAATATGGGATGCAGTCGTTGCCAAAACAATGATGGGCTGCAAGACACTGATGTCTTATCATCAATGATTAATAGCGAATGTGGTGATGATGAAACCGCTGATATAGGTGGATTTGCTGAGATTGCAGGCTGCTTAGGGAATTTGAAAACATCAGAAAAGCAGGTAGGGAATCCATTAGAAGAAGATTTAAGTAGTTGGGGACATCATTTTTTCCCAACCTCTGTACCAGACGGTGTCCTTCAGGCTTCAGCTGGTGATGAGGTGACTTTTGTCTTCACAAACCAAGTTGATGGAAAGCTGGTACCGGTTGACTCCATAAGTCCCAAGCTACAGAAAAAGGAATTACACAAGCCAAGCCGCAACGTCGAGCGAAAATCCACCCCTTTTGCTTTACGCAATAAGCTAGTGCCACTACGTTCTGCATCCAATATTGCCAATGTGTCATGCTCATCTTCGATTGCTTGGACGAAGAAGGCAAAGAATTGTGAAAGAATTACTCAAAATATCGCCATGAGTGTAGCATTAAACACCAAACACTCTCTTGTAAATGAATTACCAAGACAGAAAAGATCATACCCTGCTGATTCCAATGATGGCCACTCTCTTGTAAATGAAATATCACCGAAAAAAGCATGTCATGTTGATAACAATGATGAAAATTTTGAGTAA

Protein sequence

>Msa1452220

MLEEDEDVVLLSSSSSSDSDEEVEVSSSSSDSEIEQVSQRKSQNVEALIKGNLIVKRQSLLPRVYSTNGAAAICRKPFKPPSDAYNDNSKQDLARRLSARKRFVPWGSTTPISIPTSATPLTELDLNISDHKEEAVKPSPPLPPGIDPLILWQPLPSNSNFTTIAVDPLLVQKGFNSCLIVSLDYVRHPISMDAFWQMIWGGLGKTLQSITLLYTLICQGFDGKPMVRKAIIVTPTSLVSNWEAEIKKWVGDRVRLVALCETTRQDVISGINSFTSPQGKFQVLVVSYETFRMHSEKFSSSGSCDLLICDEAHRLKNDQTITNKALAALPCKRRVLLSGTPLQNDLEEFFAMVNFTNPGILGGIAHFRRYFEAPIICGREPAATAEEKKLGAERTAELSAKVNQFILRRTNALLSNHLPPKIIEVVCCKLTPLQSDLYKHFIQSKNVKRAITEELKQSKILAYITALKKLCNHPKLIYDTIRSGSPGTSGFEDCIRFFPPNMLSGRSGSWTGGDGGWVELSGKMQVLARLLHQLRQRTNDRIVLVSNYTQTLDLFAQLCRERKYPHLRLDGATSISKRQKLVNCLNDPSKDEFVFLLSSKAGGCGLNLIGANRLVLFDPDWNPANDKQAAARVWRDGQKKRVYIYRFLSAGTIEEKVYQRQMAKEGLQKVIQREQNDSVAAQGNFLSTEDLRNLFTFDEDVKSEIHENMGCSRCQNNDGLQDTDVLSSMINSECGDDETADIGGFAEIAGCLGNLKTSEKQVGNPLEEDLSSWGHHFFPTSVPDGVLQASAGDEVTFVFTNQVDGKLVPVDSISPKLQKKELHKPSRNVERKSTPFALRNKLVPLRSASNIANVSCSSSIAWTKKAKNCERITQNIAMSVALNTKHSLVNELPRQKRSYPADSNDGHSLVNEISPKKACHVDNNDENFE*