AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1453980

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1453980 MtrunA17_Chr2g0333981 74.706 170 43 0 1 170 1 170 3.70e-92 265
Msa1453980 MtrunA17_Chr8g0379021 73.653 167 44 0 1 167 1 167 1.23e-89 259
Msa1453980 MtrunA17_Chr4g0071601 71.111 180 42 2 1 170 1 180 3.47e-79 233
Msa1453980 MtrunA17_Chr4g0018951 77.019 161 29 2 1 161 1 153 1.79e-76 226
Msa1453980 MtrunA17_Chr1g0206991 41.176 170 90 2 8 170 5 171 1.65e-42 140
Msa1453980 MtrunA17_Chr1g0206701 41.765 170 89 2 8 170 5 171 1.90e-41 139
Msa1453980 MtrunA17_Chr8g0355091 41.765 170 89 2 8 170 5 171 2.25e-41 139
Msa1453980 MtrunA17_Chr1g0206721 41.176 170 90 2 8 170 5 171 2.57e-41 139
Msa1453980 MtrunA17_Chr3g0099421 42.353 170 88 2 8 170 30 196 3.26e-41 139
Msa1453980 MtrunA17_Chr1g0149391 41.765 170 89 2 8 170 5 171 8.42e-41 137
Msa1453980 MtrunA17_Chr2g0292791 41.176 170 90 2 8 170 5 171 2.13e-40 136
Msa1453980 MtrunA17_Chr3g0119901 41.420 169 95 1 6 170 3 171 3.30e-39 132
Msa1453980 MtrunA17_Chr3g0085241 42.262 168 93 1 7 170 36 203 5.53e-39 133
Msa1453980 MtrunA17_Chr1g0208561 42.857 168 80 5 8 165 5 166 9.26e-37 127
Msa1453980 MtrunA17_Chr3g0089141 41.212 165 87 2 8 165 5 166 6.17e-36 124
Msa1453980 MtrunA17_Chr1g0208581 40.000 165 89 2 8 165 5 166 8.18e-35 122
Msa1453980 MtrunA17_Chr3g0099411 45.600 125 58 2 8 125 5 126 7.97e-34 119
Msa1453980 MtrunA17_Chr5g0422421 40.698 172 88 4 8 170 5 171 1.20e-33 119
Msa1453980 MtrunA17_Chr2g0300441 41.139 158 83 2 8 158 5 159 7.42e-33 117
Msa1453980 MtrunA17_Chr2g0325971 40.000 165 89 2 8 165 5 166 1.15e-32 116
Msa1453980 MtrunA17_Chr1g0206691 38.854 157 86 2 21 170 1 154 3.70e-32 114
Msa1453980 MtrunA17_Chr2g0317481 38.012 171 94 3 8 170 5 171 2.45e-31 113
Msa1453980 MtrunA17_Chr2g0317451 38.012 171 94 3 8 170 5 171 2.45e-31 113
Msa1453980 MtrunA17_Chr1g0188671 39.394 165 90 2 8 165 43 204 2.89e-31 114
Msa1453980 MtrunA17_Chr5g0419601 36.970 165 100 1 8 168 5 169 7.70e-31 112
Msa1453980 MtrunA17_Chr1g0187361 39.130 161 88 3 8 161 5 162 4.04e-30 110
Msa1453980 MtrunA17_Chr2g0300421 46.154 117 53 2 8 117 5 118 1.80e-28 103
Msa1453980 MtrunA17_Chr5g0422941 35.465 172 97 3 8 170 5 171 5.67e-28 104
Msa1453980 MtrunA17_Chr3g0089151 60.274 73 29 0 8 80 5 77 1.58e-27 100
Msa1453980 MtrunA17_Chr8g0356071 40.000 130 75 3 12 139 2 130 5.76e-27 99.8
Msa1453980 MtrunA17_Chr1g0169761 42.718 103 57 1 12 112 2 104 4.32e-25 95.5
Msa1453980 MtrunA17_Chr4g0074101 38.971 136 75 4 12 142 2 134 4.61e-25 95.9
Msa1453980 MtrunA17_Chr8g0376821 40.909 110 63 1 12 119 2 111 2.74e-24 93.6
Msa1453980 MtrunA17_Chr8g0357771 39.167 120 70 2 12 128 2 121 3.08e-24 93.2
Msa1453980 MtrunA17_Chr1g0175601 39.516 124 70 2 12 133 2 122 4.67e-24 92.8
Msa1453980 MtrunA17_Chr1g0175611 43.396 106 54 2 12 113 2 105 6.17e-24 92.0
Msa1453980 MtrunA17_Chr7g0238991 37.671 146 81 2 28 166 37 179 7.39e-24 94.0
Msa1453980 MtrunA17_Chr3g0111841 61.017 59 23 0 18 76 2 60 8.37e-23 86.3
Msa1453980 MtrunA17_Chr1g0187351 60.000 60 24 0 21 80 1 60 1.55e-22 85.9
Msa1453980 MtrunA17_Chr8g0345001 36.025 161 96 4 4 161 14 170 2.12e-22 88.6
Msa1453980 MtrunA17_Chr4g0052061 43.750 96 53 1 12 107 2 96 4.37e-22 87.0
Msa1453980 MtrunA17_Chr4g0052081 45.000 80 44 0 12 91 2 81 4.46e-21 85.1
Msa1453980 MtrunA17_Chr1g0180591 37.815 119 67 3 12 125 2 118 1.25e-20 84.0
Msa1453980 MtrunA17_Chr3g0111831 57.377 61 26 0 19 79 11 71 2.34e-20 80.5
Msa1453980 MtrunA17_Chr6g0474371 34.940 166 87 6 12 168 2 155 2.48e-19 80.9
Msa1453980 MtrunA17_Chr4g0061671 36.170 141 72 5 12 150 2 126 1.65e-18 78.6
Msa1453980 MtrunA17_Chr3g0077501 50.704 71 35 0 12 82 2 72 1.66e-18 79.3
Msa1453980 MtrunA17_Chr2g0284911 42.553 94 51 1 3 96 8 98 1.76e-18 80.1
Msa1453980 MtrunA17_Chr5g0427401 48.529 68 35 0 12 79 2 69 3.72e-18 78.6
Msa1453980 MtrunA17_Chr3g0093131 35.000 140 82 3 29 161 36 173 3.82e-18 77.8
Msa1453980 MtrunA17_Chr2g0279821 40.594 101 38 1 12 112 2 80 4.18e-18 78.6
Msa1453980 MtrunA17_Chr8g0380021 40.909 110 57 2 4 111 10 113 6.63e-18 78.2
Msa1453980 MtrunA17_Chr1g0173161 62.500 56 21 0 12 67 2 57 6.73e-18 74.3
Msa1453980 MtrunA17_Chr1g0159661 50.000 64 32 0 12 75 2 65 6.89e-18 76.6
Msa1453980 MtrunA17_Chr8g0351051 51.471 68 33 0 12 79 2 69 7.84e-18 78.2
Msa1453980 MtrunA17_Chr4g0020221 35.849 159 91 2 12 170 2 149 8.25e-18 78.2
Msa1453980 MtrunA17_Chr4g0049901 48.235 85 40 2 13 94 29 112 8.92e-18 77.8
Msa1453980 MtrunA17_Chr3g0097101 41.111 90 53 0 8 97 13 102 9.24e-18 77.8
Msa1453980 MtrunA17_Chr8g0366231 43.478 92 40 2 12 94 2 90 1.80e-17 77.0
Msa1453980 MtrunA17_Chr1g0204111 35.503 169 97 8 4 168 10 170 1.86e-17 77.0
Msa1453980 MtrunA17_Chr5g0425191 58.491 53 22 0 12 64 2 54 1.97e-17 73.6
Msa1453980 MtrunA17_Chr3g0125241 50.000 64 32 0 12 75 27 90 2.13e-17 75.9
Msa1453980 MtrunA17_Chr4g0044071 56.604 53 23 0 12 64 2 54 3.19e-17 73.2
Msa1453980 MtrunA17_Chr4g0057151 35.714 154 87 4 13 163 3 147 3.88e-17 75.5
Msa1453980 MtrunA17_Chr5g0427921 52.632 57 27 0 12 68 2 58 4.53e-17 71.2
Msa1453980 MtrunA17_Chr3g0134451 54.286 70 31 1 12 80 2 71 4.81e-17 76.6
Msa1453980 MtrunA17_Chr4g0049541 45.714 70 38 0 12 81 2 71 6.45e-17 75.1
Msa1453980 MtrunA17_Chr8g0351041 39.091 110 64 2 13 119 3 112 7.42e-17 73.6
Msa1453980 MtrunA17_Chr5g0412461 52.239 67 32 0 13 79 3 69 8.21e-17 74.7
Msa1453980 MtrunA17_Chr5g0412271 51.471 68 33 0 12 79 2 69 8.97e-17 74.7
Msa1453980 MtrunA17_Chr5g0411691 39.785 93 53 1 12 104 2 91 9.27e-17 75.1
Msa1453980 MtrunA17_Chr3g0111931 56.140 57 25 0 24 80 2 58 1.01e-16 72.0
Msa1453980 MtrunA17_Chr3g0142191 52.381 63 30 0 12 74 2 64 1.10e-16 74.7
Msa1453980 MtrunA17_Chr4g0061691 49.275 69 34 1 12 79 2 70 1.13e-16 74.7
Msa1453980 MtrunA17_Chr5g0404951 50.000 72 34 1 12 81 2 73 1.34e-16 74.3
Msa1453980 MtrunA17_Chr1g0164791 34.940 166 84 7 12 169 2 151 1.39e-16 74.3
Msa1453980 MtrunA17_Chr5g0420091 51.515 66 30 1 12 75 2 67 1.63e-16 73.9
Msa1453980 MtrunA17_Chr7g0246381 56.604 53 23 0 12 64 2 54 1.88e-16 70.1
Msa1453980 MtrunA17_Chr7g0220121 34.286 140 76 5 12 150 2 126 1.97e-16 74.3
Msa1453980 MtrunA17_Chr2g0308251 48.529 68 35 0 12 79 2 69 2.09e-16 70.5
Msa1453980 MtrunA17_Chr8g0351031 34.459 148 89 4 13 160 3 142 4.12e-16 72.8
Msa1453980 MtrunA17_Chr8g0377561 55.357 56 25 0 12 67 2 57 6.58e-16 69.3
Msa1453980 MtrunA17_Chr3g0122251 57.143 56 24 0 12 67 2 57 8.04e-16 72.4
Msa1453980 MtrunA17_Chr2g0302091 35.976 164 87 6 3 161 33 183 8.10e-16 71.6
Msa1453980 MtrunA17_Chr7g0220111 55.357 56 25 0 12 67 2 57 8.20e-16 72.4
Msa1453980 MtrunA17_Chr6g0455511 49.296 71 35 1 12 81 2 72 1.04e-15 72.4
Msa1453980 MtrunA17_Chr5g0420081 34.286 140 74 6 12 148 2 126 1.25e-15 72.0
Msa1453980 MtrunA17_Chr7g0246431 55.357 56 25 0 13 68 3 58 1.38e-15 71.2
Msa1453980 MtrunA17_Chr4g0060841 51.923 52 25 0 12 63 2 53 3.24e-13 66.2
Msa1453980 MtrunA17_Chr5g0417661 44.068 59 32 1 12 69 57 115 5.48e-13 62.8
Msa1453980 MtrunA17_Chr4g0018421 38.028 71 43 1 12 81 2 72 7.69e-13 63.9
Msa1453980 MtrunA17_Chr1g0166611 63.636 44 16 0 25 68 19 62 1.14e-12 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1453980 AT5G60440.1 41.615 161 81 3 8 158 3 160 5.25e-36 127
Msa1453980 AT2G24840.1 38.608 158 92 4 10 162 61 218 8.11e-32 115
Msa1453980 AT1G65360.1 45.185 135 69 3 8 138 3 136 5.40e-31 112
Msa1453980 AT4G36590.1 36.747 166 95 3 8 163 3 168 1.01e-27 104
Msa1453980 AT1G01530.1 50.562 89 39 1 8 91 3 91 4.49e-26 100
Msa1453980 AT2G34440.1 36.111 144 84 4 12 150 2 142 9.56e-23 89.7
Msa1453980 AT3G66656.1 46.875 96 50 1 12 107 2 96 8.94e-22 87.0
Msa1453980 AT1G72350.1 32.680 153 74 3 12 164 43 166 1.15e-21 88.2
Msa1453980 AT3G04100.1 33.735 166 94 5 8 161 10 171 1.46e-21 87.4
Msa1453980 AT5G10140.2 44.037 109 54 3 12 119 2 104 1.91e-20 83.6
Msa1453980 AT4G09960.1 34.161 161 89 5 12 170 2 147 3.96e-20 84.0
Msa1453980 AT1G28460.1 34.132 167 99 4 8 165 4 168 3.98e-20 83.2
Msa1453980 AT4G09960.6 34.161 161 89 5 12 170 3 148 4.03e-20 84.0
Msa1453980 AT5G10140.4 44.037 109 54 3 12 119 2 104 4.11e-20 82.8
Msa1453980 AT5G10140.1 44.037 109 54 3 12 119 2 104 4.53e-20 83.2
Msa1453980 AT5G10140.3 44.037 109 54 3 12 119 2 104 4.63e-20 82.8
Msa1453980 AT4G09960.5 34.161 161 89 5 12 170 12 157 5.09e-20 84.0
Msa1453980 AT4G09960.3 34.161 161 89 5 12 170 28 173 7.85e-20 84.0
Msa1453980 AT4G09960.2 37.589 141 71 5 12 150 2 127 1.59e-19 82.4
Msa1453980 AT3G54340.1 55.556 63 28 0 12 74 2 64 2.85e-19 82.0
Msa1453980 AT5G51870.5 51.899 79 38 0 8 86 21 99 4.05e-19 80.9
Msa1453980 AT4G09960.4 32.919 161 91 4 12 170 97 242 4.20e-19 82.8
Msa1453980 AT4G18960.1 32.941 170 91 5 9 173 15 166 1.01e-18 80.9
Msa1453980 AT5G51870.3 50.617 81 40 0 1 81 1 81 1.15e-18 80.1
Msa1453980 AT1G77980.1 50.000 70 34 1 12 80 2 71 1.43e-18 81.6
Msa1453980 AT5G51870.1 55.072 69 31 0 13 81 3 71 1.49e-18 79.3
Msa1453980 AT1G77950.3 50.000 70 34 1 12 80 2 71 1.50e-18 80.5
Msa1453980 AT1G77950.2 50.000 70 34 1 12 80 2 71 1.50e-18 80.5
Msa1453980 AT1G77950.1 50.000 70 34 1 12 80 2 71 1.50e-18 80.5
Msa1453980 AT1G77950.4 50.000 70 34 1 12 80 2 71 1.50e-18 80.5
Msa1453980 AT5G51870.2 52.703 74 35 0 13 86 3 76 1.64e-18 78.6
Msa1453980 AT4G37940.4 45.946 74 40 0 12 85 2 75 2.23e-18 79.3
Msa1453980 AT2G45660.2 34.783 138 77 2 13 150 3 127 2.36e-18 77.8
Msa1453980 AT4G37940.1 45.946 74 40 0 12 85 2 75 2.42e-18 79.3
Msa1453980 AT4G24540.1 55.882 68 30 0 12 79 2 69 2.54e-18 79.0
Msa1453980 AT2G42830.1 30.769 169 96 6 9 173 14 165 2.63e-18 79.7
Msa1453980 AT1G29962.1 31.977 172 99 5 8 165 4 171 2.88e-18 78.2
Msa1453980 AT2G42830.2 30.769 169 96 6 9 173 14 165 2.95e-18 79.3
Msa1453980 AT2G45650.1 43.878 98 33 1 12 109 2 77 3.10e-18 79.3
Msa1453980 AT4G37940.3 45.946 74 40 0 12 85 2 75 3.79e-18 77.8
Msa1453980 AT1G22130.1 50.000 70 34 1 12 80 2 71 4.10e-18 80.5
Msa1453980 AT4G22950.2 34.532 139 75 2 13 150 3 126 4.25e-18 77.4
Msa1453980 AT2G22630.1 47.297 74 39 0 12 85 2 75 4.88e-18 78.6
Msa1453980 AT2G22630.2 47.297 74 39 0 12 85 2 75 4.88e-18 78.6
Msa1453980 AT2G22540.3 53.731 67 31 0 13 79 3 69 4.96e-18 78.6
Msa1453980 AT2G22540.1 53.731 67 31 0 13 79 3 69 4.96e-18 78.6
Msa1453980 AT5G51870.4 46.067 89 44 1 13 101 3 87 5.18e-18 78.2
Msa1453980 AT5G13790.2 52.703 74 33 1 12 85 2 73 7.85e-18 78.6
Msa1453980 AT5G13790.1 52.703 74 33 1 12 85 2 73 8.11e-18 78.6
Msa1453980 AT2G45660.1 34.783 138 77 2 13 150 3 127 8.26e-18 77.8
Msa1453980 AT5G23260.4 29.268 164 99 4 6 164 12 163 8.90e-18 78.6
Msa1453980 AT3G57230.2 45.588 68 37 0 12 79 2 69 9.68e-18 75.9
Msa1453980 AT5G23260.1 46.250 80 41 1 6 83 12 91 1.02e-17 78.2
Msa1453980 AT5G51860.2 36.806 144 75 5 13 154 3 132 1.26e-17 77.0
Msa1453980 AT4G22950.3 34.532 139 75 2 13 150 3 126 1.36e-17 77.0
Msa1453980 AT4G22950.1 34.532 139 75 2 13 150 3 126 1.36e-17 77.0
Msa1453980 AT5G51860.1 36.806 144 75 5 13 154 3 132 1.50e-17 77.0
Msa1453980 AT2G22540.2 64.151 53 19 0 13 65 3 55 1.58e-17 77.4
Msa1453980 AT3G57390.3 51.471 68 33 0 12 79 2 69 2.53e-17 76.6
Msa1453980 AT3G58780.1 29.885 174 101 6 4 173 9 165 2.74e-17 77.0
Msa1453980 AT3G58780.5 29.885 174 101 6 4 173 15 171 3.14e-17 77.0
Msa1453980 AT3G57230.1 45.588 68 37 0 12 79 2 69 3.45e-17 76.6
Msa1453980 AT3G57230.4 45.588 68 37 0 12 79 2 69 3.45e-17 76.6
Msa1453980 AT5G23260.3 29.936 157 93 4 12 163 2 146 4.00e-17 76.3
Msa1453980 AT5G23260.2 29.747 158 94 4 12 164 2 147 4.08e-17 76.6
Msa1453980 AT3G58780.4 36.290 124 63 5 4 123 9 120 4.72e-17 76.6
Msa1453980 AT1G28450.1 32.530 166 98 5 8 161 4 167 5.01e-17 75.1
Msa1453980 AT3G57390.1 51.471 68 33 0 12 79 2 69 6.64e-17 75.9
Msa1453980 AT5G62165.6 38.053 113 60 2 13 119 3 111 6.65e-17 73.9
Msa1453980 AT5G62165.9 38.053 113 60 2 13 119 3 111 6.65e-17 73.9
Msa1453980 AT5G62165.7 38.053 113 60 2 13 119 3 111 6.65e-17 73.9
Msa1453980 AT5G62165.8 38.053 113 60 2 13 119 3 111 6.65e-17 73.9
Msa1453980 AT5G62165.13 38.053 113 60 2 13 119 3 111 6.65e-17 73.9
Msa1453980 AT5G62165.17 38.053 113 60 2 13 119 3 111 7.58e-17 73.9
Msa1453980 AT5G62165.12 38.053 113 60 2 13 119 3 111 7.58e-17 73.9
Msa1453980 AT5G62165.11 38.053 113 60 2 13 119 3 111 7.58e-17 73.9
Msa1453980 AT5G62165.14 45.455 77 42 0 13 89 3 79 8.57e-17 72.4
Msa1453980 AT3G58780.2 50.769 65 32 0 4 68 9 73 1.12e-16 75.1
Msa1453980 AT3G58780.3 50.769 65 32 0 4 68 9 73 1.22e-16 75.5
Msa1453980 AT3G30260.1 30.723 166 95 5 12 173 2 151 1.97e-16 74.7
Msa1453980 AT4G11880.2 53.333 60 28 0 13 72 3 62 2.40e-16 73.2
Msa1453980 AT4G11880.3 53.333 60 28 0 13 72 3 62 2.40e-16 73.2
Msa1453980 AT5G62165.10 38.053 113 60 2 13 119 3 111 2.99e-16 73.2
Msa1453980 AT5G62165.4 38.053 113 60 2 13 119 3 111 2.99e-16 73.2
Msa1453980 AT5G20240.2 48.611 72 35 1 12 81 2 73 3.85e-16 71.6
Msa1453980 AT5G62165.3 38.053 113 60 2 13 119 3 111 3.91e-16 73.2
Msa1453980 AT5G62165.1 38.053 113 60 2 13 119 3 111 3.91e-16 73.2
Msa1453980 AT5G62165.2 38.053 113 60 2 13 119 3 111 3.91e-16 73.2
Msa1453980 AT2G14210.1 39.604 101 40 2 12 112 2 81 4.07e-16 73.6
Msa1453980 AT2G14210.2 40.594 101 39 2 12 112 2 81 6.05e-16 73.2
Msa1453980 AT1G69120.2 49.231 65 30 1 12 76 2 63 6.28e-16 73.2
Msa1453980 AT5G15800.1 41.489 94 51 2 12 101 2 95 7.17e-16 73.2
Msa1453980 AT4G11880.4 58.182 55 23 0 13 67 3 57 7.79e-16 72.4
Msa1453980 AT4G11880.1 58.182 55 23 0 13 67 3 57 7.79e-16 72.4
Msa1453980 AT5G20240.1 48.611 72 35 1 12 81 2 73 7.83e-16 72.4
Msa1453980 AT5G60910.1 36.879 141 73 6 12 150 2 128 9.78e-16 72.8
Msa1453980 AT1G26310.1 54.386 57 26 0 12 68 2 58 1.01e-15 72.8
Msa1453980 AT3G02310.2 41.489 94 51 2 12 101 2 95 1.28e-15 71.6
Msa1453980 AT5G15800.2 41.489 94 51 2 12 101 2 95 1.58e-15 72.4
Msa1453980 AT1G69120.1 49.231 65 30 1 12 76 2 63 1.65e-15 72.4
Msa1453980 AT2G03710.3 53.571 56 26 0 12 67 2 57 1.68e-15 70.9
Msa1453980 AT1G24260.1 55.357 56 25 0 12 67 2 57 1.86e-15 72.0
Msa1453980 AT1G24260.3 55.357 56 25 0 12 67 2 57 1.89e-15 71.6
Msa1453980 AT1G24260.2 55.357 56 25 0 12 67 2 57 1.94e-15 72.0
Msa1453980 AT2G03710.1 53.571 56 26 0 12 67 2 57 2.18e-15 72.0
Msa1453980 AT2G03710.2 53.571 56 26 0 12 67 2 57 2.24e-15 72.0
Msa1453980 AT3G61120.1 44.286 70 39 0 12 81 2 71 2.48e-15 71.6
Msa1453980 AT3G02310.1 55.357 56 25 0 12 67 2 57 4.00e-15 71.2
Msa1453980 AT5G65070.4 43.478 69 38 1 12 79 2 70 6.26e-15 68.6
Msa1453980 AT5G65060.3 31.325 166 80 5 12 170 2 140 7.04e-15 69.3
Msa1453980 AT5G65060.1 31.325 166 80 5 12 170 2 140 8.88e-15 69.3
Msa1453980 AT1G71692.1 44.286 70 38 1 13 81 3 72 8.96e-15 69.7
Msa1453980 AT5G65050.2 44.928 69 37 1 12 79 2 70 9.25e-15 68.9
Msa1453980 AT5G65070.1 31.176 170 81 6 12 173 2 143 1.20e-14 68.9
Msa1453980 AT4G37435.1 53.571 56 26 0 12 67 2 57 1.83e-14 68.2
Msa1453980 AT5G65050.5 44.928 69 37 1 12 79 2 70 1.85e-14 68.2
Msa1453980 AT5G65050.1 44.928 69 37 1 12 79 2 70 1.87e-14 68.2
Msa1453980 AT5G65050.3 44.928 69 37 1 12 79 2 70 1.90e-14 68.6
Msa1453980 AT1G47760.1 47.458 59 31 0 12 70 2 60 2.67e-14 67.8
Msa1453980 AT5G65070.5 43.478 69 38 1 12 79 2 70 3.53e-14 67.8
Msa1453980 AT5G65070.2 43.478 69 38 1 12 79 2 70 3.54e-14 68.2
Msa1453980 AT5G65060.2 42.029 69 39 1 12 79 2 70 5.82e-14 67.0
Msa1453980 AT5G65070.3 47.368 57 30 0 12 68 2 58 7.57e-14 67.4
Msa1453980 AT1G18750.4 46.429 56 30 0 12 67 2 57 3.82e-13 66.6
Msa1453980 AT1G18750.3 46.429 56 30 0 12 67 2 57 4.43e-13 66.6
Msa1453980 AT1G18750.1 46.429 56 30 0 12 67 2 57 4.51e-13 66.6
Msa1453980 AT5G38620.1 27.108 166 93 6 13 171 6 150 8.48e-13 65.5
Msa1453980 AT1G69540.1 25.967 181 112 6 12 171 2 181 1.04e-12 65.1
Msa1453980 AT1G69540.2 25.967 181 112 6 12 171 2 181 1.87e-12 64.7
Msa1453980 AT2G03060.3 46.552 58 30 1 12 68 2 59 2.83e-12 64.3
Msa1453980 AT2G03060.7 46.552 58 30 1 12 68 2 59 2.83e-12 64.3
Msa1453980 AT2G03060.1 46.552 58 30 1 12 68 2 59 2.83e-12 64.3
Msa1453980 AT5G49490.1 36.709 79 46 1 8 82 41 119 2.83e-12 63.5
Msa1453980 AT2G03060.2 46.552 58 30 1 12 68 2 59 3.15e-12 63.9
Msa1453980 AT5G65080.2 41.667 60 35 0 6 65 3 62 6.12e-12 61.6
Msa1453980 AT5G65080.3 46.296 54 29 0 12 65 9 62 6.28e-12 61.6
Msa1453980 AT5G49420.1 34.177 79 48 1 8 82 3 81 1.34e-11 62.0
Msa1453980 AT1G17310.1 32.680 153 71 3 12 164 48 168 1.55e-11 60.8
Msa1453980 AT1G17310.2 32.680 153 71 3 12 164 59 179 1.89e-11 60.8
Msa1453980 AT1G31140.1 42.424 66 36 1 18 81 8 73 5.37e-11 59.3
Msa1453980 AT1G31140.2 42.424 66 36 1 18 81 8 73 5.61e-11 59.3

Find 26 sgRNAs with CRISPR-Local

Find 31 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACTAGCTGATGTTGAAATTT+TGG 0.117908 tig0034984:+8797 Msa1453980:CDS
TGAAGAGCTTGAACAATTTA+TGG 0.162069 tig0034984:+8875 Msa1453980:CDS
TAAAGAGCAAGCTTCTTAAA+AGG 0.200612 tig0034984:+8913 Msa1453980:CDS
TAGCTATATCAAAGGAAATA+TGG 0.289414 tig0034984:+8674 Msa1453980:CDS
GTACAATTTCACCATGAATA+TGG 0.297892 tig0034984:+8431 None:intergenic
TCTTTGGTTATCCATATTCA+TGG 0.348175 tig0034984:-8442 None:intergenic
CAAAGGAAATATGGAATTTG+AGG 0.375897 tig0034984:+8683 Msa1453980:CDS
TTCCTTTGATATAGCTATTG+AGG 0.388895 tig0034984:-8668 None:intergenic
GGCATTAAAGATGTTAGAGT+TGG 0.397789 tig0034984:+8764 Msa1453980:CDS
TTTGAGGATTCAAAATCAAC+AGG 0.408590 tig0034984:+8699 Msa1453980:CDS
TGAGAAAGTGACTTGTTTGT+TGG 0.422775 tig0034984:-8517 None:intergenic
GCTGACAAACTATTCTGCTT+TGG 0.441818 tig0034984:+8624 Msa1453980:CDS
ATTGAGGATTGTATCGGTGT+TGG 0.451013 tig0034984:-8652 None:intergenic
TTGAGGATTGTATCGGTGTT+GGG 0.452068 tig0034984:-8651 None:intergenic
AAAGAGCAAGCTTCTTAAAA+GGG 0.470494 tig0034984:+8914 Msa1453980:CDS
AAGCAGAATAGTTTGTCAGC+AGG 0.500375 tig0034984:-8621 None:intergenic
AAAGTACAATAGACAATATG+AGG 0.506411 tig0034984:+8740 Msa1453980:CDS
AGCAGAATAGTTTGTCAGCA+GGG 0.519077 tig0034984:-8620 None:intergenic
AACCAAAGAAAGAAAACCAC+AGG 0.525657 tig0034984:+8456 Msa1453980:CDS
TTCAATCTTCTTGCGCCCTG+TGG 0.560440 tig0034984:-8472 None:intergenic
ATCCTCAATAGCTATATCAA+AGG 0.568313 tig0034984:+8666 Msa1453980:CDS
GCAGAATAGTTTGTCAGCAG+GGG 0.610124 tig0034984:-8619 None:intergenic
ACTTTCTCAAAGAGAAGACA+AGG 0.611669 tig0034984:+8531 Msa1453980:CDS
ATAGCTATTGAGGATTGTAT+CGG 0.621531 tig0034984:-8658 None:intergenic
GTACAATAGACAATATGAGG+AGG 0.673698 tig0034984:+8743 Msa1453980:CDS
ACCAAAGAAAGAAAACCACA+GGG 0.726086 tig0034984:+8457 Msa1453980:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
! TAGCTATATCAAAGGAAATA+TGG + tig0034984:8674-8693 Msa1453980:CDS 25.0%
! AAAGTACAATAGACAATATG+AGG + tig0034984:8740-8759 Msa1453980:CDS 25.0%
ATAGCTATTGAGGATTGTAT+CGG - tig0034984:8661-8680 None:intergenic 30.0%
ATCCTCAATAGCTATATCAA+AGG + tig0034984:8666-8685 Msa1453980:CDS 30.0%
TTCCTTTGATATAGCTATTG+AGG - tig0034984:8671-8690 None:intergenic 30.0%
CAAAGGAAATATGGAATTTG+AGG + tig0034984:8683-8702 Msa1453980:CDS 30.0%
TTTGAGGATTCAAAATCAAC+AGG + tig0034984:8699-8718 Msa1453980:CDS 30.0%
! TTGTCTATTGTACTTTTCGT+AGG - tig0034984:8736-8755 None:intergenic 30.0%
! ACTAGCTGATGTTGAAATTT+TGG + tig0034984:8797-8816 Msa1453980:CDS 30.0%
ATCACCTTTCTTCAAAAACT+TGG - tig0034984:8823-8842 None:intergenic 30.0%
!! AGTTTTTGAAGAAAGGTGAT+TGG + tig0034984:8823-8842 Msa1453980:CDS 30.0%
TGAAGAGCTTGAACAATTTA+TGG + tig0034984:8875-8894 Msa1453980:CDS 30.0%
CTTGCTCTTTAACTCAAAAA+TGG - tig0034984:8904-8923 None:intergenic 30.0%
TAAAGAGCAAGCTTCTTAAA+AGG + tig0034984:8913-8932 Msa1453980:CDS 30.0%
AAAGAGCAAGCTTCTTAAAA+GGG + tig0034984:8914-8933 Msa1453980:CDS 30.0%
AACCAAAGAAAGAAAACCAC+AGG + tig0034984:8456-8475 Msa1453980:CDS 35.0%
ACCAAAGAAAGAAAACCACA+GGG + tig0034984:8457-8476 Msa1453980:CDS 35.0%
!! TGAGAAAGTGACTTGTTTGT+TGG - tig0034984:8520-8539 None:intergenic 35.0%
ACTTTCTCAAAGAGAAGACA+AGG + tig0034984:8531-8550 Msa1453980:CDS 35.0%
GTACAATAGACAATATGAGG+AGG + tig0034984:8743-8762 Msa1453980:CDS 35.0%
GGCATTAAAGATGTTAGAGT+TGG + tig0034984:8764-8783 Msa1453980:CDS 35.0%
!! TTGGCCAAGTTTTTGAAGAA+AGG + tig0034984:8816-8835 Msa1453980:CDS 35.0%
!! TTTTGAAGAAAGGTGATTGG+TGG + tig0034984:8826-8845 Msa1453980:CDS 35.0%
! AGCAGAATAGTTTGTCAGCA+GGG - tig0034984:8623-8642 None:intergenic 40.0%
! AAGCAGAATAGTTTGTCAGC+AGG - tig0034984:8624-8643 None:intergenic 40.0%
GCTGACAAACTATTCTGCTT+TGG + tig0034984:8624-8643 Msa1453980:CDS 40.0%
! TTGAGGATTGTATCGGTGTT+GGG - tig0034984:8654-8673 None:intergenic 40.0%
! ATTGAGGATTGTATCGGTGT+TGG - tig0034984:8655-8674 None:intergenic 40.0%
! GCCCTGTGGTTTTCTTTCTT+TGG - tig0034984:8461-8480 None:intergenic 45.0%
! GCAGAATAGTTTGTCAGCAG+GGG - tig0034984:8622-8641 None:intergenic 45.0%
TTCAATCTTCTTGCGCCCTG+TGG - tig0034984:8475-8494 None:intergenic 50.0%
Chromosome Type Strat End Strand Name
tig0034984 gene 8444 8965 8444 ID=Msa1453980;Name=Msa1453980
tig0034984 mRNA 8444 8965 8444 ID=Msa1453980-mRNA-1;Parent=Msa1453980;Name=Msa1453980-mRNA-1;_AED=0.01;_eAED=0.01;_QI=0|-1|0|1|-1|1|1|0|173
tig0034984 exon 8444 8965 8444 ID=Msa1453980-mRNA-1:exon:19432;Parent=Msa1453980-mRNA-1
tig0034984 CDS 8444 8965 8444 ID=Msa1453980-mRNA-1:cds;Parent=Msa1453980-mRNA-1
Gene Sequence

>Msa1453980

ATGAATATGGATAACCAAAGAAAGAAAACCACAGGGCGCAAGAAGATTGAAATCAAAAAGCTTGACAAAGAATCCAACAAACAAGTCACTTTCTCAAAGAGAAGACAAGGTTTGTTCAAAAAAGCAAGTGAACTTTGTGTCTTATGTGATGTTCAAGTAGCTATGATTGTGTTCTCCCCTGCTGACAAACTATTCTGCTTTGGTCAACCCAACACCGATACAATCCTCAATAGCTATATCAAAGGAAATATGGAATTTGAGGATTCAAAATCAACAGGAAATTCTTCAACCTACGAAAAGTACAATAGACAATATGAGGAGGCATTAAAGATGTTAGAGTTGGAGAAGAAGAAACTAGCTGATGTTGAAATTTTGGCCAAGTTTTTGAAGAAAGGTGATTGGTGGAATGATTCAATTGATGATATGAGTAGTGAAGAGCTTGAACAATTTATGGTGTCCATTTTTGAGTTAAAGAGCAAGCTTCTTAAAAGGGCTGATGAACTTATGATGTCTGTCATATAG
Protein sequence

>Msa1453980

MNMDNQRKKTTGRKKIEIKKLDKESNKQVTFSKRRQGLFKKASELCVLCDVQVAMIVFSPADKLFCFGQPNTDTILNSYIKGNMEFEDSKSTGNSSTYEKYNRQYEEALKMLELEKKKLADVEILAKFLKKGDWWNDSIDDMSSEELEQFMVSIFELKSKLLKRADELMMSVI*