AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1458700

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1458700 MtrunA17_Chr8g0354771 96.494 599 21 0 1 599 168 766 0.0 1197
Msa1458700 MtrunA17_Chr8g0354741 81.135 599 99 2 1 599 52 636 0.0 973
Msa1458700 MtrunA17_Chr3g0136151 49.007 604 288 10 1 596 170 761 0.0 556
Msa1458700 MtrunA17_Chr3g0143251 48.179 604 292 9 1 596 174 764 4.02e-176 518
Msa1458700 MtrunA17_Chr8g0369891 43.144 598 311 12 6 598 181 754 1.00e-150 452
Msa1458700 MtrunA17_Chr5g0407701 44.426 601 301 15 6 598 176 751 1.20e-147 444
Msa1458700 MtrunA17_Chr1g0204321 42.857 595 321 11 6 592 189 772 8.72e-142 430
Msa1458700 MtrunA17_Chr4g0076611 40.722 609 321 12 5 596 108 693 1.29e-140 424
Msa1458700 MtrunA17_Chr8g0377961 42.200 609 314 16 6 597 188 775 1.19e-139 424
Msa1458700 MtrunA17_Chr4g0057461 40.201 597 326 12 11 590 39 621 1.68e-137 414
Msa1458700 MtrunA17_Chr4g0037221 41.129 620 316 14 6 596 168 767 1.07e-136 416
Msa1458700 MtrunA17_Chr2g0300751 40.820 610 321 14 3 595 185 771 3.49e-136 415
Msa1458700 MtrunA17_Chr4g0026641 40.970 598 337 10 5 598 170 755 6.55e-136 414
Msa1458700 MtrunA17_Chr5g0401511 42.079 606 325 15 5 598 173 764 9.15e-136 414
Msa1458700 MtrunA17_Chr5g0423261 40.296 608 320 12 10 597 38 622 4.77e-135 407
Msa1458700 MtrunA17_Chr4g0057511 41.246 594 332 12 10 597 34 616 2.46e-134 405
Msa1458700 MtrunA17_Chr4g0057491 40.165 605 325 12 10 597 38 622 5.44e-134 405
Msa1458700 MtrunA17_Chr8g0344331 42.295 610 319 14 5 597 182 775 1.49e-133 409
Msa1458700 MtrunA17_Chr4g0057471 41.021 607 320 11 10 599 126 711 3.06e-133 406
Msa1458700 MtrunA17_Chr4g0020651 41.903 599 328 12 5 595 169 755 5.02e-133 407
Msa1458700 MtrunA17_Chr3g0120521 38.564 599 340 15 10 597 189 770 5.33e-131 402
Msa1458700 MtrunA17_Chr4g0070391 41.680 607 323 14 3 595 161 750 1.88e-129 397
Msa1458700 MtrunA17_Chr4g0057531 40.698 602 336 10 8 599 189 779 3.27e-128 395
Msa1458700 MtrunA17_Chr7g0262161 40.753 611 320 15 6 596 172 760 5.27e-127 391
Msa1458700 MtrunA17_Chr8g0334521 40.572 594 306 14 11 597 181 734 1.24e-126 389
Msa1458700 MtrunA17_Chr7g0266051 41.957 603 299 17 9 596 139 705 1.54e-125 385
Msa1458700 MtrunA17_Chr4g0057481 39.037 602 334 12 10 597 108 690 1.55e-125 385
Msa1458700 MtrunA17_Chr7g0246461 40.527 607 301 16 2 596 181 739 2.42e-125 386
Msa1458700 MtrunA17_Chr4g0057061 42.275 589 306 12 11 592 209 770 3.91e-124 384
Msa1458700 MtrunA17_Chr6g0470851 41.500 600 293 21 10 597 177 730 5.65e-124 382
Msa1458700 MtrunA17_Chr7g0250481 37.460 630 339 16 6 597 186 798 7.16e-124 384
Msa1458700 MtrunA17_Chr8g0351011 42.159 593 302 19 9 592 187 747 1.55e-123 382
Msa1458700 MtrunA17_Chr1g0170081 39.733 599 308 19 10 598 177 732 4.07e-123 380
Msa1458700 MtrunA17_Chr7g0250371 39.870 617 326 19 7 597 188 785 1.12e-121 378
Msa1458700 MtrunA17_Chr1g0152771 39.037 602 342 11 4 590 165 756 1.15e-121 377
Msa1458700 MtrunA17_Chr7g0246451 39.898 589 321 13 9 592 181 741 5.39e-121 375
Msa1458700 MtrunA17_Chr7g0227991 39.430 596 317 13 10 599 179 736 6.07e-121 375
Msa1458700 MtrunA17_Chr4g0053781 37.983 595 346 13 5 590 168 748 1.01e-120 375
Msa1458700 MtrunA17_Chr6g0470881 41.176 595 302 18 10 597 177 730 1.44e-120 374
Msa1458700 MtrunA17_Chr8g0334491 39.765 596 304 16 11 598 181 729 1.56e-120 374
Msa1458700 MtrunA17_Chr7g0250411 38.889 612 342 17 7 599 188 786 3.39e-120 374
Msa1458700 MtrunA17_Chr1g0146251 40.232 604 302 21 10 598 177 736 6.76e-120 372
Msa1458700 MtrunA17_Chr5g0439271 36.895 599 346 12 13 590 8 595 7.44e-118 362
Msa1458700 MtrunA17_Chr7g0250331 38.924 632 333 18 7 597 188 807 1.53e-117 368
Msa1458700 MtrunA17_Chr5g0398241 39.933 596 318 13 11 596 188 753 2.08e-117 366
Msa1458700 MtrunA17_Chr5g0398401 39.597 596 320 13 11 596 188 753 2.09e-116 363
Msa1458700 MtrunA17_Chr3g0079971 38.796 598 317 17 10 598 176 733 2.15e-116 363
Msa1458700 MtrunA17_Chr1g0146271 39.203 602 309 20 10 598 177 734 7.25e-116 361
Msa1458700 MtrunA17_Chr7g0250391 38.322 608 347 16 7 597 187 783 7.38e-116 363
Msa1458700 MtrunA17_Chr5g0398331 38.655 595 325 12 11 596 187 750 2.52e-115 360
Msa1458700 MtrunA17_Chr8g0345971 36.585 615 331 16 6 598 183 760 1.19e-114 359
Msa1458700 MtrunA17_Chr5g0398351 38.963 598 320 12 11 596 169 733 1.47e-110 362
Msa1458700 MtrunA17_Chr5g0398351 38.796 598 322 12 11 596 939 1504 5.57e-108 355
Msa1458700 MtrunA17_Chr1g0189561 37.624 606 341 13 4 596 179 760 1.09e-109 346
Msa1458700 MtrunA17_Chr1g0189251 36.484 603 332 17 6 592 182 749 2.48e-109 345
Msa1458700 MtrunA17_Chr7g0276151 35.974 606 341 14 6 596 182 755 1.82e-108 343
Msa1458700 MtrunA17_Chr8g0344971 38.374 615 336 14 5 599 171 762 1.93e-108 343
Msa1458700 MtrunA17_Chr7g0248871 37.397 607 341 17 4 596 182 763 4.34e-108 342
Msa1458700 MtrunA17_Chr2g0285121 38.019 626 332 19 5 599 185 785 6.88e-108 342
Msa1458700 MtrunA17_Chr8g0345981 36.529 605 332 18 9 592 180 753 8.33e-108 341
Msa1458700 MtrunA17_Chr2g0285111 37.681 621 340 17 5 599 189 788 1.97e-107 341
Msa1458700 MtrunA17_Chr8g0345991 35.420 607 342 15 9 596 178 753 2.44e-106 337
Msa1458700 MtrunA17_Chr5g0398311 37.500 592 332 9 11 596 187 746 2.98e-104 331
Msa1458700 MtrunA17_Chr2g0303881 36.007 611 325 18 11 596 156 725 5.30e-101 322
Msa1458700 MtrunA17_Chr3g0134621 36.106 601 324 15 6 590 173 729 1.77e-98 316
Msa1458700 MtrunA17_Chr8g0376841 44.526 411 206 9 9 417 191 581 9.22e-96 305
Msa1458700 MtrunA17_Chr8g0345961 34.944 621 341 17 6 596 169 756 3.99e-95 308
Msa1458700 MtrunA17_Chr5g0447171 35.441 522 269 11 128 599 7 510 4.95e-94 298
Msa1458700 MtrunA17_Chr3g0143241 49.518 311 141 6 1 307 174 472 2.39e-88 284
Msa1458700 MtrunA17_Chr2g0301011 37.740 469 220 11 10 477 79 476 9.54e-86 276
Msa1458700 MtrunA17_Chr7g0248861 38.819 474 259 13 4 466 185 638 5.87e-83 277
Msa1458700 MtrunA17_Chr7g0248861 48.947 190 92 3 4 193 675 859 3.71e-40 157
Msa1458700 MtrunA17_Chr4g0075331 34.891 599 306 26 6 549 121 690 8.18e-75 253
Msa1458700 MtrunA17_Chr4g0071871 33.762 622 346 26 5 581 197 797 7.14e-73 249
Msa1458700 MtrunA17_Chr2g0298601 34.194 620 342 25 7 581 199 797 1.86e-70 243
Msa1458700 MtrunA17_Chr4g0035881 40.431 371 160 8 51 417 4 317 1.37e-69 228
Msa1458700 MtrunA17_Chr3g0105451 44.369 293 142 7 312 598 3 280 1.99e-69 226
Msa1458700 MtrunA17_Chr7g0261691 41.158 311 168 7 5 307 44 347 4.04e-67 222
Msa1458700 MtrunA17_Chr2g0301911 39.474 342 174 10 10 347 48 360 7.18e-64 214
Msa1458700 MtrunA17_Chr3g0105461 59.259 189 68 3 14 202 150 329 6.96e-63 211
Msa1458700 MtrunA17_Chr7g0261701 40.345 290 165 4 307 596 8 289 2.00e-61 205
Msa1458700 MtrunA17_Chr8g0346361 39.130 345 183 8 256 597 177 497 1.21e-60 209
Msa1458700 MtrunA17_Chr8g0346361 53.608 194 69 4 11 203 23 196 3.03e-56 197
Msa1458700 MtrunA17_Chr3g0097061 45.833 240 107 5 10 245 79 299 2.70e-55 193
Msa1458700 MtrunA17_Chr3g0097061 43.103 116 59 1 378 493 332 440 3.45e-24 105
Msa1458700 MtrunA17_Chr8g0380961 30.669 613 341 24 5 561 226 810 2.72e-55 201
Msa1458700 MtrunA17_Chr7g0250441 42.349 281 152 7 323 599 11 285 5.64e-55 189
Msa1458700 MtrunA17_Chr2g0302951 30.016 613 346 20 5 561 218 803 3.08e-54 198
Msa1458700 MtrunA17_Chr6g0480721 38.966 290 165 6 304 592 317 595 9.58e-53 191
Msa1458700 MtrunA17_Chr6g0480721 43.810 210 113 2 11 220 108 312 2.43e-48 178
Msa1458700 MtrunA17_Chr2g0312841 53.107 177 67 3 10 185 27 188 4.19e-52 177
Msa1458700 MtrunA17_Chr7g0250461 39.785 279 154 8 7 278 188 459 1.20e-51 185
Msa1458700 MtrunA17_Chr4g0026651 51.282 195 87 4 5 193 117 309 5.35e-51 178
Msa1458700 MtrunA17_Chr3g0103071 39.033 269 148 5 99 360 1 260 5.09e-50 174
Msa1458700 MtrunA17_Chr3g0142981 47.895 190 62 4 17 202 32 188 2.02e-44 157
Msa1458700 MtrunA17_Chr5g0436021 50.000 166 73 2 14 179 31 186 2.23e-43 153
Msa1458700 MtrunA17_Chr4g0026661 37.354 257 152 5 344 598 12 261 3.66e-43 155
Msa1458700 MtrunA17_Chr2g0301031 39.535 258 143 7 344 598 1 248 3.97e-43 155
Msa1458700 MtrunA17_Chr2g0312861 38.645 251 139 8 344 590 1 240 7.98e-42 153
Msa1458700 MtrunA17_Chr4g0071191 37.229 231 132 6 298 526 31 250 2.05e-34 130
Msa1458700 MtrunA17_Chr2g0301921 37.037 216 124 6 386 598 1 207 2.02e-33 127
Msa1458700 MtrunA17_Chr3g0143231 61.538 91 33 1 327 417 1 89 2.54e-27 105
Msa1458700 MtrunA17_Chr3g0103081 38.095 147 86 4 452 597 1 143 1.18e-24 100
Msa1458700 MtrunA17_Chr3g0142971 59.770 87 33 1 327 413 1 85 2.41e-24 97.1
Msa1458700 MtrunA17_Chr3g0142961 38.571 140 80 4 424 558 1 139 6.97e-24 97.8
Msa1458700 MtrunA17_Chr3g0143221 36.872 179 90 7 424 596 1 162 1.51e-22 94.7
Msa1458700 MtrunA17_Chr2g0301021 29.286 280 106 9 10 281 159 354 1.92e-22 99.8
Msa1458700 MtrunA17_Chr8g0376851 33.758 157 97 5 441 592 13 167 9.64e-20 87.0
Msa1458700 MtrunA17_Chr5g0436031 30.921 152 103 2 442 592 26 176 1.05e-19 88.2
Msa1458700 MtrunA17_Chr5g0418921 40.157 127 73 2 323 447 11 136 4.29e-19 85.5
Msa1458700 MtrunA17_Chr7g0248851 35.333 150 88 5 452 596 1 146 7.73e-18 80.9
Msa1458700 MtrunA17_Chr3g0143011 65.306 49 17 0 141 189 2 50 1.82e-15 71.2
Msa1458700 MtrunA17_Chr3g0103061 49.383 81 35 2 10 88 183 259 2.02e-14 73.9
Msa1458700 MtrunA17_Chr3g0121211 53.226 62 27 1 128 187 17 78 3.06e-12 62.8
Msa1458700 MtrunA17_Chr5g0434941 47.297 74 36 2 105 176 2 74 4.75e-12 62.0
Msa1458700 MtrunA17_Chr5g0398341 36.264 91 58 0 386 476 1 91 1.11e-11 61.6
Msa1458700 MtrunA17_Chr3g0077671 46.479 71 36 2 378 446 238 308 2.71e-11 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1458700 AT1G20160.2 47.603 605 299 7 1 599 133 725 0.0 537
Msa1458700 AT1G20160.1 47.603 605 299 7 1 599 172 764 0.0 536
Msa1458700 AT1G20150.1 44.816 598 305 9 11 596 186 770 1.01e-159 476
Msa1458700 AT4G34980.1 41.941 608 324 11 6 596 163 758 2.82e-142 431
Msa1458700 AT2G04160.1 40.100 601 332 13 10 598 188 772 3.62e-134 410
Msa1458700 AT2G05920.1 40.728 604 319 15 5 592 165 745 9.14e-134 409
Msa1458700 AT5G59090.3 41.137 598 307 15 7 598 170 728 1.12e-133 408
Msa1458700 AT5G59090.1 41.137 598 307 15 7 598 172 730 1.76e-133 407
Msa1458700 AT5G59100.1 41.723 592 307 13 7 592 174 733 2.06e-133 407
Msa1458700 AT5G59090.2 41.304 598 301 15 7 598 172 725 2.76e-133 407
Msa1458700 AT5G67360.1 40.932 601 330 13 5 596 170 754 5.93e-132 404
Msa1458700 AT5G59810.1 39.399 599 335 12 11 598 195 776 4.24e-130 400
Msa1458700 AT3G14067.1 40.976 615 322 14 5 597 173 768 3.36e-129 397
Msa1458700 AT3G46840.1 41.611 596 307 17 7 596 174 734 3.54e-129 396
Msa1458700 AT5G51750.1 39.933 596 338 11 6 592 186 770 1.96e-128 395
Msa1458700 AT5G59120.1 40.871 597 306 17 7 596 171 727 3.87e-127 391
Msa1458700 AT1G04110.1 40.033 612 322 15 2 591 174 762 4.26e-126 389
Msa1458700 AT3G46850.1 40.741 594 308 16 11 596 177 734 1.15e-125 387
Msa1458700 AT5G59190.1 43.409 569 281 16 8 573 134 664 3.39e-125 385
Msa1458700 AT5G58840.1 41.206 597 279 17 7 596 175 706 1.09e-124 384
Msa1458700 AT5G03620.1 40.962 603 307 17 9 590 177 751 1.46e-123 382
Msa1458700 AT3G14240.1 40.065 619 341 15 1 599 164 772 5.58e-123 381
Msa1458700 AT5G45650.2 39.032 620 330 15 6 598 192 790 8.18e-122 379
Msa1458700 AT5G45650.1 39.032 620 330 15 6 598 192 790 8.18e-122 379
Msa1458700 AT5G58820.1 40.034 592 293 13 7 596 169 700 1.15e-121 376
Msa1458700 AT5G59130.3 38.926 596 313 16 7 596 136 686 8.63e-121 373
Msa1458700 AT5G59130.1 38.926 596 313 16 7 596 171 721 1.37e-120 374
Msa1458700 AT5G59130.4 38.926 596 313 16 7 596 175 725 2.94e-120 373
Msa1458700 AT5G58830.1 39.866 597 294 15 7 599 173 708 4.85e-120 372
Msa1458700 AT4G00230.1 41.990 593 304 17 9 592 178 739 5.31e-119 370
Msa1458700 AT4G10510.2 38.499 613 339 13 4 599 106 697 3.87e-116 362
Msa1458700 AT4G10510.4 38.499 613 339 13 4 599 121 712 4.07e-116 362
Msa1458700 AT5G59130.2 38.591 596 305 17 7 596 175 715 1.26e-115 361
Msa1458700 AT4G10510.1 38.499 613 339 13 4 599 165 756 2.23e-115 361
Msa1458700 AT4G10510.3 38.499 613 339 13 4 599 177 768 3.44e-115 361
Msa1458700 AT4G10550.4 37.401 631 322 17 4 599 121 713 1.35e-113 355
Msa1458700 AT4G10550.2 37.401 631 322 17 4 599 121 713 1.35e-113 355
Msa1458700 AT4G10550.1 37.380 626 329 16 4 599 177 769 7.10e-113 355
Msa1458700 AT1G01900.1 37.379 618 344 14 2 599 180 774 1.08e-112 354
Msa1458700 AT4G10550.3 37.380 626 329 16 4 599 193 785 1.17e-112 355
Msa1458700 AT5G11940.1 37.847 613 333 17 1 599 177 755 3.89e-112 353
Msa1458700 AT4G26330.2 38.158 608 339 17 4 592 128 717 6.23e-111 348
Msa1458700 AT4G26330.1 38.158 608 339 17 4 592 142 731 7.76e-111 349
Msa1458700 AT4G10540.1 37.299 622 342 15 1 599 170 766 1.67e-110 349
Msa1458700 AT1G20160.3 51.014 345 161 1 1 345 172 508 1.97e-110 342
Msa1458700 AT4G21630.1 37.357 613 308 16 8 597 195 754 8.80e-110 347
Msa1458700 AT4G10520.1 38.143 603 326 14 10 599 179 747 1.53e-109 346
Msa1458700 AT1G32940.4 38.825 613 335 16 6 599 123 714 1.61e-109 345
Msa1458700 AT1G32940.2 38.825 613 335 16 6 599 123 714 1.61e-109 345
Msa1458700 AT1G32940.1 38.825 613 335 16 6 599 174 765 5.92e-109 345
Msa1458700 AT1G66210.1 37.049 610 333 13 1 597 180 751 7.02e-109 344
Msa1458700 AT1G32970.1 39.071 581 306 14 40 599 172 725 1.15e-108 343
Msa1458700 AT4G21640.1 38.308 603 282 17 10 597 201 728 1.40e-108 343
Msa1458700 AT1G32960.1 37.886 615 342 17 4 599 175 768 2.49e-108 343
Msa1458700 AT4G21650.1 36.964 606 321 15 10 597 199 761 1.18e-107 341
Msa1458700 AT1G66220.1 35.726 599 342 10 8 599 185 747 7.37e-107 338
Msa1458700 AT5G67090.1 38.103 601 311 20 3 585 158 715 1.22e-106 338
Msa1458700 AT1G32950.2 38.374 615 338 17 4 599 121 713 4.57e-106 336
Msa1458700 AT1G32950.1 38.374 615 338 17 4 599 172 764 1.42e-105 336
Msa1458700 AT4G10530.1 36.755 604 324 17 10 599 179 738 3.19e-99 318
Msa1458700 AT4G15040.2 37.012 589 327 13 11 596 138 685 6.56e-99 316
Msa1458700 AT4G15040.1 37.012 589 327 13 11 596 138 685 6.56e-99 316
Msa1458700 AT5G45640.1 35.360 625 339 17 6 598 162 753 1.06e-98 317
Msa1458700 AT5G03620.2 44.712 416 206 10 9 417 177 575 1.25e-96 307
Msa1458700 AT5G58840.3 44.310 413 172 10 7 417 175 531 1.47e-96 306
Msa1458700 AT4G21323.1 34.910 613 329 20 1 590 222 787 5.60e-92 301
Msa1458700 AT4G00230.2 44.550 422 208 10 9 426 178 577 8.34e-91 292
Msa1458700 AT4G21326.1 33.770 610 350 17 4 599 121 690 6.82e-89 290
Msa1458700 AT1G32940.3 40.183 438 232 12 6 428 174 596 2.56e-76 254
Msa1458700 AT2G39850.1 35.058 599 323 23 11 573 165 733 2.78e-76 258
Msa1458700 AT2G19170.1 33.546 626 339 25 7 581 195 794 2.10e-75 256
Msa1458700 AT2G19170.2 33.546 626 339 25 7 581 195 794 2.10e-75 256
Msa1458700 AT4G30020.3 33.492 630 358 23 7 593 196 807 1.53e-73 251
Msa1458700 AT4G30020.1 33.492 630 358 23 7 593 196 807 1.53e-73 251
Msa1458700 AT4G30020.4 33.492 630 358 23 7 593 196 807 1.53e-73 251
Msa1458700 AT4G30020.2 33.492 630 358 23 7 593 196 807 1.53e-73 251
Msa1458700 AT5G58840.2 42.522 341 139 9 7 345 175 460 7.85e-70 234
Msa1458700 AT1G62340.1 32.034 590 336 21 6 549 212 782 6.31e-69 239
Msa1458700 AT1G30600.1 32.295 610 334 23 6 561 207 791 4.38e-65 228
Msa1458700 AT4G20430.3 30.363 606 335 21 5 552 228 804 7.13e-64 225
Msa1458700 AT4G20430.1 30.363 606 335 21 5 552 228 804 7.13e-64 225
Msa1458700 AT5G44530.1 32.190 612 315 25 5 552 214 789 7.35e-64 225
Msa1458700 AT4G20430.2 30.348 603 315 21 5 552 228 780 6.31e-61 217
Msa1458700 AT5G44530.2 30.926 637 315 26 5 552 214 814 4.54e-59 212
Msa1458700 AT1G32980.1 37.234 188 112 3 380 565 1 184 9.08e-35 130
Msa1458700 AT5G44530.3 29.829 409 206 18 5 358 214 596 1.01e-30 127
Msa1458700 AT5G59110.1 34.969 163 100 4 442 599 8 169 2.37e-23 97.8

Find 175 sgRNAs with CRISPR-Local

Find 244 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCAGATTCCTTTGTTATTA+TGG 0.141455 tig0039696:-17145 Msa1458700:CDS
CTCTGAAAACACAAGTTTAT+TGG 0.145713 tig0039696:+16895 Msa1458700:intergenic
TACCTGATTGTGTAACATTT+TGG 0.168485 tig0039696:-16686 Msa1458700:three_prime_UTR
GTTAACAATGCAAGTTATTA+TGG 0.204393 tig0039696:-19689 Msa1458700:CDS
GGCTCCAGGAGTTGCCATTT+TGG 0.213675 tig0039696:-17738 Msa1458700:CDS
GAATTATAGATTCTGGTAAA+TGG 0.235054 tig0039696:+16629 Msa1458700:intergenic
TCTGAAAACACAAGTTTATT+GGG 0.264618 tig0039696:+16896 Msa1458700:intergenic
ACGATGCATTCTCTTGTCTT+TGG 0.265128 tig0039696:-19011 Msa1458700:CDS
TTCCCAATCGGAACATTTCC+TGG 0.272040 tig0039696:+17689 Msa1458700:intergenic
ATTTCCTGGCTCATCACTAT+TGG 0.280047 tig0039696:+17703 Msa1458700:intergenic
TCCTGAGAATGAGACTTTAT+AGG 0.281617 tig0039696:+16856 Msa1458700:intergenic
TGGCTTCCTCATGTTATTGT+AGG 0.284039 tig0039696:+17282 Msa1458700:intergenic
TGCTCTGAAGAAGGCTGTTC+AGG 0.284215 tig0039696:-19605 Msa1458700:CDS
TCTCTATAGGAACACTAAAA+AGG 0.285277 tig0039696:-17027 Msa1458700:CDS
CAAACTCCTTTCCATCTTGA+TGG 0.285285 tig0039696:+20018 Msa1458700:intergenic
GGCAAAGTAATTTGAGCTAT+TGG 0.291437 tig0039696:+17255 Msa1458700:intergenic
GGGAATCATGGCAGCCAAAA+TGG 0.302680 tig0039696:+17724 Msa1458700:intergenic
GCTCGCGGTGGATACAATAT+TGG 0.307088 tig0039696:-16827 Msa1458700:CDS
CTTTATATTGTGTTTGGAAA+TGG 0.309478 tig0039696:-16659 Msa1458700:three_prime_UTR
CTTTGCCAACCCACATGAAA+TGG 0.312056 tig0039696:-17239 Msa1458700:CDS
GGCTAACTTTATATTGTGTT+TGG 0.312347 tig0039696:-16665 Msa1458700:three_prime_UTR
TATATTTGAATTATAGATTC+TGG 0.318118 tig0039696:+16622 Msa1458700:intergenic
TAAAATTGATACAGCTTGTT+AGG 0.320211 tig0039696:-20340 Msa1458700:five_prime_UTR
CATAAAATCTGGTACATCTA+TGG 0.323132 tig0039696:-17648 Msa1458700:CDS
GCATTTCCCTTCACAGAGAT+TGG 0.329807 tig0039696:-18546 Msa1458700:CDS
GTCATGGTTGTGTGTTCAGC+TGG 0.330264 tig0039696:-19437 Msa1458700:CDS
GGTAGTTGATGTTTGATATA+AGG 0.343352 tig0039696:+17056 Msa1458700:intergenic
TCCTTATTTGGCATAAAATC+TGG 0.344211 tig0039696:-17659 Msa1458700:CDS
ATGGCTTGCCCACATGTGAC+TGG 0.348668 tig0039696:-17629 Msa1458700:CDS
CTGTTCTGCATCAAGGGATA+TGG 0.349115 tig0039696:-20083 Msa1458700:five_prime_UTR
GTTTCAGAGATGAGGGTATA+GGG 0.349470 tig0039696:-20047 Msa1458700:five_prime_UTR
TCAACTATTGTCCTTGGAAA+TGG 0.362640 tig0039696:-19326 Msa1458700:CDS
GATATAATCTCAATATCTAT+TGG 0.367180 tig0039696:-19536 Msa1458700:CDS
TTTCCTGGCTCATCACTATT+GGG 0.370276 tig0039696:+17704 Msa1458700:intergenic
AGTTTCAGAGATGAGGGTAT+AGG 0.382132 tig0039696:-20048 Msa1458700:five_prime_UTR
TATCTAGGAACTTCTGTTGT+TGG 0.384215 tig0039696:+17956 Msa1458700:intergenic
TGAAATGCTCCAATGGCTAT+TGG 0.385801 tig0039696:+19476 Msa1458700:intergenic
TTGCAGCTTCTAATATTGAT+AGG 0.388979 tig0039696:-19358 Msa1458700:CDS
AATTGTTCACAATATGTAAC+AGG 0.393773 tig0039696:+20141 Msa1458700:intergenic
AGAATCTCTCGGTGAACCTT+TGG 0.394329 tig0039696:+19757 Msa1458700:intergenic
GTGAAATAGATCAAGAGAAT+TGG 0.395232 tig0039696:+16568 Msa1458700:intergenic
CCTAACAGAAAATATTCTTA+AGG 0.402582 tig0039696:-17885 Msa1458700:intron
AGTTATTATGGTTTAGCAAA+AGG 0.405138 tig0039696:-19677 Msa1458700:CDS
AGCCAAAATGTTACACAATC+AGG 0.407057 tig0039696:+16684 Msa1458700:intergenic
TCAAGAAATCTAATTGCAAC+AGG 0.415774 tig0039696:-19978 Msa1458700:intron
TTTCAGTCAACTATTGTCCT+TGG 0.420951 tig0039696:-19332 Msa1458700:CDS
ATCATCCATAGCCTTTAGTA+TGG 0.422452 tig0039696:+19577 Msa1458700:intergenic
CCTTGATGCAGAACAGAGAT+AGG 0.427891 tig0039696:+20090 Msa1458700:intergenic
GGTAGCAACAAGACTCATAT+TGG 0.433290 tig0039696:-19785 Msa1458700:CDS
TTGTTATAATCTAGTGATCC+AGG 0.435560 tig0039696:+18711 Msa1458700:intergenic
ACAGAGATTGGAAATCTTGA+AGG 0.437042 tig0039696:-18534 Msa1458700:CDS
AATGCATCGTTGAGCGTGTA+AGG 0.438597 tig0039696:+19024 Msa1458700:intergenic
CAACAGAAGTTCCTAGATAT+AGG 0.441287 tig0039696:-17952 Msa1458700:CDS
TGTTTGTGTTGTCAGGGTGC+TGG 0.441500 tig0039696:-19062 Msa1458700:intron
TTGATGTTTGATATAAGGTC+TGG 0.441987 tig0039696:+17061 Msa1458700:intergenic
ACCTTAACAACCAATCCTTC+AGG 0.442278 tig0039696:+16923 Msa1458700:intergenic
TGGCTTGCCCACATGTGACT+GGG 0.443894 tig0039696:-17628 Msa1458700:CDS
ACCTATAAAGTCTCATTCTC+AGG 0.447510 tig0039696:-16857 Msa1458700:CDS
ACCTGAAGGATTGGTTGTTA+AGG 0.448243 tig0039696:-16924 Msa1458700:CDS
CTCGCGGTGGATACAATATT+GGG 0.448385 tig0039696:-16826 Msa1458700:CDS
CCTATCTCTGTTCTGCATCA+AGG 0.450211 tig0039696:-20090 Msa1458700:five_prime_UTR
GGGTCTCTAACATGGCTTGA+TGG 0.458168 tig0039696:-16806 Msa1458700:CDS
ACGATGATCCGAATATTTCA+AGG 0.466507 tig0039696:-18659 Msa1458700:CDS
ACTCCTGGAGCCATGACATC+AGG 0.466836 tig0039696:+17749 Msa1458700:intergenic
CTCATCACTATTGGGAATCA+TGG 0.468371 tig0039696:+17712 Msa1458700:intergenic
AACTACCCGTCAATCTCTAT+AGG 0.469155 tig0039696:-17040 Msa1458700:CDS
AACTGCAGGAACTGTTATCC+TGG 0.471237 tig0039696:-18729 Msa1458700:intron
AAATCAGCATTAATGACAAC+AGG 0.473314 tig0039696:-17554 Msa1458700:intron
TAAGGTCTGGAGAGGTCCTT+GGG 0.474472 tig0039696:+17074 Msa1458700:intergenic
GTGTGTTCAGCTGGGAATGA+TGG 0.474923 tig0039696:-19428 Msa1458700:CDS
ATAAGGTCTGGAGAGGTCCT+TGG 0.476076 tig0039696:+17073 Msa1458700:intergenic
CATTAATGCTGATTTGATCA+TGG 0.476243 tig0039696:+17562 Msa1458700:intergenic
AAGCCTGATGTCATGGCTCC+AGG 0.476929 tig0039696:-17752 Msa1458700:CDS
TTTGCCAACCCACATGAAAT+GGG 0.478474 tig0039696:-17238 Msa1458700:CDS
ATTGGTGCAGGCCTATATCT+AGG 0.479424 tig0039696:+17941 Msa1458700:intergenic
TTGAATGATCCAATAGCCAT+TGG 0.481383 tig0039696:-19485 Msa1458700:CDS
GTAACAGGAAATATCAAGTA+AGG 0.481753 tig0039696:+20156 Msa1458700:intergenic
TAATTTGAGCTATTGGTCAC+TGG 0.483535 tig0039696:+17262 Msa1458700:intergenic
GTTATTCAAATAAAATCATA+AGG 0.485730 tig0039696:-17123 Msa1458700:CDS
GGCTATGGATGATGCTATCA+AGG 0.485872 tig0039696:-19567 Msa1458700:CDS
TCTCTGAAACTTGGTGACTC+TGG 0.493058 tig0039696:+20060 Msa1458700:intergenic
AACTCCCATTTCATGTGGGT+TGG 0.494917 tig0039696:+17234 Msa1458700:intergenic
AGCCAGGAAATGTTCCGATT+GGG 0.496846 tig0039696:-17691 Msa1458700:CDS
GATGAGAATGATGCAACAAT+TGG 0.497391 tig0039696:+17923 Msa1458700:intergenic
GCAGCCAAAATGGCAACTCC+TGG 0.501092 tig0039696:+17734 Msa1458700:intergenic
AAGATTTCCAATCTCTGTGA+AGG 0.501417 tig0039696:+18539 Msa1458700:intergenic
CAAAGATGTTTCATTTGATG+CGG 0.501786 tig0039696:-18571 Msa1458700:CDS
TATAAAACATGCTCTGAAGA+AGG 0.506929 tig0039696:-19614 Msa1458700:CDS
CTCCAACTCCCATTTCATGT+GGG 0.507765 tig0039696:+17230 Msa1458700:intergenic
GGTACAAGATGCAAGGGCCA+TGG 0.508074 tig0039696:-18619 Msa1458700:CDS
TAGGCAGCAATCCTAGTTGA+AGG 0.508301 tig0039696:+19635 Msa1458700:intergenic
CTATCTCTGTTCTGCATCAA+GGG 0.510602 tig0039696:-20089 Msa1458700:five_prime_UTR
CACACTGCATCAACAGCAGC+TGG 0.512459 tig0039696:-19719 Msa1458700:CDS
TCAAATCAGTACATGGAAGA+TGG 0.513729 tig0039696:-17592 Msa1458700:CDS
TCATGGTTGTGTGTTCAGCT+GGG 0.516185 tig0039696:-19436 Msa1458700:CDS
TTCCACCATACTAAAGGCTA+TGG 0.516816 tig0039696:-19582 Msa1458700:CDS
AACCCACATGAAATGGGAGT+TGG 0.521830 tig0039696:-17232 Msa1458700:CDS
TTTGTTTCAAAGACTAAACC+AGG 0.526441 tig0039696:+17181 Msa1458700:intergenic
CTAGATTATAACAAAATAGC+AGG 0.530540 tig0039696:-18702 Msa1458700:CDS
GAGCCAGGAAATGTTCCGAT+TGG 0.530842 tig0039696:-17692 Msa1458700:CDS
TTCACAACAGTGGAAGGATC+AGG 0.532190 tig0039696:+19404 Msa1458700:intergenic
GTACAAGATGCAAGGGCCAT+GGG 0.534218 tig0039696:-18618 Msa1458700:CDS
GTCACCAAGTTTCAGAGATG+AGG 0.535700 tig0039696:-20055 Msa1458700:five_prime_UTR
AGTGTTCCTATAGAGATTGA+CGG 0.535946 tig0039696:+17034 Msa1458700:intergenic
GTGTTCCTATAGAGATTGAC+GGG 0.536858 tig0039696:+17035 Msa1458700:intergenic
TTCAGGTTCCACCATACTAA+AGG 0.537004 tig0039696:-19588 Msa1458700:CDS
CCGAGAGATTCTGTTGGACA+TGG 0.541668 tig0039696:-19746 Msa1458700:CDS
CAGGTTAAGAAGTTAATGAA+AGG 0.542917 tig0039696:-20399 None:intergenic
TATTGTCAAGCCTGATGTCA+TGG 0.543633 tig0039696:-17759 Msa1458700:intron
ATACCCTCATCTCTGAAACT+TGG 0.546928 tig0039696:+20051 Msa1458700:intergenic
TATACTACACAAGATACATT+CGG 0.548103 tig0039696:-19806 Msa1458700:CDS
TGCAGAACAAAGAGGGGTCA+TGG 0.551521 tig0039696:-19453 Msa1458700:CDS
TAGGGAAGATTCCATCAAGA+TGG 0.551876 tig0039696:-20029 Msa1458700:five_prime_UTR
AAAGATGTTTCATTTGATGC+GGG 0.553510 tig0039696:-18570 Msa1458700:CDS
CATTTCATGCAGAACAAAGA+GGG 0.554303 tig0039696:-19460 Msa1458700:CDS
GGTGCATGCACCTGAAGGAT+TGG 0.555113 tig0039696:-16933 Msa1458700:CDS
AGCTAGTGGTACAAGATGCA+AGG 0.555931 tig0039696:-18626 Msa1458700:CDS
TCACCAAGTTTCAGAGATGA+GGG 0.556271 tig0039696:-20054 Msa1458700:five_prime_UTR
AGGTTAAGAAGTTAATGAAA+GGG 0.556301 tig0039696:-20398 None:intergenic
AATGCTGATTTGATCATGGA+AGG 0.556950 tig0039696:+17566 Msa1458700:intergenic
TTGAATAACCATAATAACAA+AGG 0.557279 tig0039696:+17137 Msa1458700:intergenic
TCTCCAACTCCCATTTCATG+TGG 0.558604 tig0039696:+17229 Msa1458700:intergenic
ATGGATGATGCTATCAAGGA+TGG 0.563249 tig0039696:-19563 Msa1458700:CDS
CTGAAAACACAAGTTTATTG+GGG 0.563471 tig0039696:+16897 Msa1458700:intergenic
TAATGCTACATATGTTGCAA+AGG 0.565127 tig0039696:-16954 Msa1458700:CDS
TTCTGCATGAAATGCTCCAA+TGG 0.566301 tig0039696:+19469 Msa1458700:intergenic
ATCCATAGCCTTTAGTATGG+TGG 0.566898 tig0039696:+19580 Msa1458700:intergenic
GGTCCTTGGGCAAGTGACAT+TGG 0.568134 tig0039696:+17087 Msa1458700:intergenic
GCTGCAGCCCCAGTCACATG+TGG 0.571667 tig0039696:+17620 Msa1458700:intergenic
ATTCCCAATAGTGATGAGCC+AGG 0.573812 tig0039696:-17707 Msa1458700:CDS
ACAAGAACAGTTACTAATGT+GGG 0.574305 tig0039696:-16983 Msa1458700:CDS
GAGGTGGTTCGCCTTCAACT+AGG 0.576185 tig0039696:-19646 Msa1458700:CDS
AGTCTCATTCTCAGGAAACA+AGG 0.576795 tig0039696:-16849 Msa1458700:CDS
CACAAGAACAGTTACTAATG+TGG 0.577553 tig0039696:-16984 Msa1458700:CDS
ACAATATTGGGTCTCTAACA+TGG 0.578524 tig0039696:-16814 Msa1458700:CDS
GGCTTGCCCACATGTGACTG+GGG 0.582705 tig0039696:-17627 Msa1458700:CDS
GTTGGAAGAATTGTAGCAGT+TGG 0.583165 tig0039696:+17974 Msa1458700:intergenic
CAGAGATTGGAAATCTTGAA+GGG 0.584814 tig0039696:-18533 Msa1458700:CDS
AATGATGCAACAATTGGTGC+AGG 0.584840 tig0039696:+17929 Msa1458700:intergenic
TCGCGCCAACATCAGAAGCT+AGG 0.587723 tig0039696:-18968 Msa1458700:intron
AGATTTCCAATCTCTGTGAA+GGG 0.588030 tig0039696:+18540 Msa1458700:intergenic
AAGATTCCATCAAGATGGAA+AGG 0.589925 tig0039696:-20024 Msa1458700:five_prime_UTR
AAGATGGAAAGGAGTTTGCA+TGG 0.590204 tig0039696:-20013 Msa1458700:exon
ACTCATATTGGAGGAGCCAA+AGG 0.592127 tig0039696:-19773 Msa1458700:CDS
AGGTACCTAGCTTCTGATGT+TGG 0.598308 tig0039696:+18963 Msa1458700:intergenic
GCATTCATCAAATCAGTACA+TGG 0.599169 tig0039696:-17599 Msa1458700:CDS
CCATGTCCAACAGAATCTCT+CGG 0.607349 tig0039696:+19746 Msa1458700:intergenic
GTTGCATCATTCTCATCTAG+AGG 0.607595 tig0039696:-17917 Msa1458700:CDS
ATTCTATGTGTGAGCAGATG+TGG 0.609226 tig0039696:+20295 Msa1458700:intergenic
AGCAACAAGACTCATATTGG+AGG 0.612583 tig0039696:-19782 Msa1458700:CDS
GCAAAAGGAACAGCAAGAGG+TGG 0.615763 tig0039696:-19662 Msa1458700:CDS
GGTTCACCGAGAGATTCTGT+TGG 0.616518 tig0039696:-19752 Msa1458700:CDS
CCACTCAAAGCTCTCAACCC+TGG 0.618114 tig0039696:-17199 Msa1458700:CDS
GCTGCAACTGTAAATATCCA+TGG 0.618925 tig0039696:+19374 Msa1458700:intergenic
CCAGGGTTGAGAGCTTTGAG+TGG 0.620715 tig0039696:+17199 Msa1458700:intergenic
TTGTCAATGAGACATAGTCT+TGG 0.620812 tig0039696:-16594 Msa1458700:three_prime_UTR
GCTAGTGGTACAAGATGCAA+GGG 0.620961 tig0039696:-18625 Msa1458700:CDS
AAGGAAAATCAAGAAGCTAG+TGG 0.623250 tig0039696:-18640 Msa1458700:CDS
GCATTTCATGCAGAACAAAG+AGG 0.625345 tig0039696:-19461 Msa1458700:CDS
CTGCAGCCCCAGTCACATGT+GGG 0.629991 tig0039696:+17621 Msa1458700:intergenic
TTCTCAGGAAACAAGGCTCG+CGG 0.633791 tig0039696:-16842 Msa1458700:CDS
AGACCAATGTCACTTGCCCA+AGG 0.643537 tig0039696:-17090 Msa1458700:CDS
GTTTGATATAAGGTCTGGAG+AGG 0.646826 tig0039696:+17066 Msa1458700:intergenic
TTAGCAAAAGGAACAGCAAG+AGG 0.651788 tig0039696:-19665 Msa1458700:CDS
GCAAAGGTGCATGCACCTGA+AGG 0.652036 tig0039696:-16938 Msa1458700:CDS
GCTGTGTTCACAACAGTGGA+AGG 0.652676 tig0039696:+19398 Msa1458700:intergenic
CTACAACCTACAATAACATG+AGG 0.655339 tig0039696:-17288 Msa1458700:CDS
TCAGGAAACAAGGCTCGCGG+TGG 0.656260 tig0039696:-16839 Msa1458700:CDS
TACAAGATGCAAGGGCCATG+GGG 0.678717 tig0039696:-18617 Msa1458700:CDS
ATTTCATGCAGAACAAAGAG+GGG 0.684145 tig0039696:-19459 Msa1458700:CDS
TGGTGCTGTGTTCACAACAG+TGG 0.687314 tig0039696:+19394 Msa1458700:intergenic
GCTGACGAATATCATCCCCA+TGG 0.696124 tig0039696:+18602 Msa1458700:intergenic
CTGTTGTGAACACAGCACCA+TGG 0.697754 tig0039696:-19391 Msa1458700:CDS
TTGTTTCAAAGACTAAACCA+GGG 0.699767 tig0039696:+17182 Msa1458700:intergenic
ATGGAAAGGAGTTTGCATGG+AGG 0.743477 tig0039696:-20010 Msa1458700:exon

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTCAAATAGTTTTAAATTT+TGG + tig0039696:18776-18795 Msa1458700:intergenic 10.0%
!! TTATATACTATGAAAAATTC+AGG + tig0039696:16753-16772 Msa1458700:intergenic 15.0%
!! AATTCTCTTAAAAAAAATAC+AGG - tig0039696:17095-17114 Msa1458700:CDS 15.0%
!! TTAATTAGAAGATTAGAAAA+AGG + tig0039696:19433-19452 Msa1458700:intergenic 15.0%
!! GTTATTCAAATAAAATCATA+AGG - tig0039696:19822-19841 Msa1458700:CDS 15.0%
!! TATATTTGAATTATAGATTC+TGG + tig0039696:20326-20345 Msa1458700:intergenic 15.0%
!! AATGAAAAACATTCAAAGAT+TGG - tig0039696:17021-17040 Msa1458700:CDS 20.0%
!! AAAAAATACAGGAAATTGAT+AGG - tig0039696:17106-17125 Msa1458700:CDS 20.0%
!! GATATAATCTCAATATCTAT+TGG - tig0039696:17409-17428 Msa1458700:intron 20.0%
!!! TAGTATACTTTTCTTATGTT+GGG + tig0039696:18185-18204 Msa1458700:intergenic 20.0%
!!! TTAGTATACTTTTCTTATGT+TGG + tig0039696:18186-18205 Msa1458700:intergenic 20.0%
!!! TTGATTTTCCTTGAAATATT+CGG + tig0039696:18297-18316 Msa1458700:intergenic 20.0%
!!! TAATATTGATAATGCTTACT+TGG + tig0039696:18466-18485 Msa1458700:intergenic 20.0%
!!! AAAATGCATTGACAATTTTT+AGG - tig0039696:18534-18553 Msa1458700:CDS 20.0%
!! AGATAATCACTGAAATAAAA+TGG + tig0039696:18807-18826 Msa1458700:intergenic 20.0%
!!! TTGTTTTCTCAAATTACTAT+TGG - tig0039696:19542-19561 Msa1458700:CDS 20.0%
!! TTGAATAACCATAATAACAA+AGG + tig0039696:19811-19830 Msa1458700:intergenic 20.0%
!! TAACAAGCTGTATCAATTTT+AGG + tig0039696:16606-16625 Msa0353070:intergenic 25.0%
!! TAAAATTGATACAGCTTGTT+AGG - tig0039696:16605-16624 Msa1458700:three_prime_UTR 25.0%
! AATTGTTCACAATATGTAAC+AGG + tig0039696:16807-16826 Msa1458700:intergenic 25.0%
! TATACTACACAAGATACATT+CGG - tig0039696:17139-17158 Msa1458700:CDS 25.0%
! GTTAACAATGCAAGTTATTA+TGG - tig0039696:17256-17275 Msa1458700:CDS 25.0%
! AGTTATTATGGTTTAGCAAA+AGG - tig0039696:17268-17287 Msa1458700:CDS 25.0%
! AGAGAAAATGATCAATAACA+AGG + tig0039696:18005-18024 Msa1458700:intergenic 25.0%
!! TGTTATTGATCATTTTCTCT+TGG - tig0039696:18005-18024 Msa1458700:intron 25.0%
! CTAGATTATAACAAAATAGC+AGG - tig0039696:18243-18262 Msa1458700:intron 25.0%
! ATTGAAATGACACAAAATTG+TGG - tig0039696:18594-18613 Msa1458700:CDS 25.0%
!!! TAGTTTTAAATTTTGGTCCA+AGG + tig0039696:18769-18788 Msa1458700:intergenic 25.0%
! GTAATTTATTATGTTTGCCT+TGG - tig0039696:18884-18903 Msa1458700:intron 25.0%
!! CCTTAAGAATATTTTCTGTT+AGG + tig0039696:19063-19082 Msa1458700:intergenic 25.0%
! CCTAACAGAAAATATTCTTA+AGG - tig0039696:19060-19079 Msa1458700:intron 25.0%
! TAAATAGATGAAATGCATGT+TGG + tig0039696:19105-19124 Msa1458700:intergenic 25.0%
!!! ATCAGATTCCTTTGTTATTA+TGG - tig0039696:19800-19819 Msa1458700:CDS 25.0%
! TCTGAAAACACAAGTTTATT+GGG + tig0039696:20052-20071 Msa1458700:intergenic 25.0%
! CTTTATATTGTGTTTGGAAA+TGG - tig0039696:20286-20305 Msa1458700:five_prime_UTR 25.0%
! GAATTATAGATTCTGGTAAA+TGG + tig0039696:20319-20338 Msa1458700:intergenic 25.0%
GTAACAGGAAATATCAAGTA+AGG + tig0039696:16792-16811 Msa1458700:intergenic 30.0%
TCAAGAAATCTAATTGCAAC+AGG - tig0039696:16967-16986 Msa1458700:CDS 30.0%
! TTCTTCAGAGCATGTTTTAT+AGG + tig0039696:17332-17351 Msa1458700:intergenic 30.0%
!! TATAAAACATGCTCTGAAGA+AGG - tig0039696:17331-17350 Msa1458700:intron 30.0%
TTGCAGCTTCTAATATTGAT+AGG - tig0039696:17587-17606 Msa1458700:CDS 30.0%
!! TTTTCTTTGTTTGTGTTGTC+AGG - tig0039696:17876-17895 Msa1458700:intron 30.0%
! TTTCTTTGTTTGTGTTGTCA+GGG - tig0039696:17877-17896 Msa1458700:intron 30.0%
! TTGATCATTTTCTCTTGGTA+TGG - tig0039696:18010-18029 Msa1458700:intron 30.0%
TCTTGGTATGGAATTTCATT+AGG - tig0039696:18022-18041 Msa1458700:intron 30.0%
TTACTGAATCTCAGTTGAAT+TGG + tig0039696:18048-18067 Msa1458700:intergenic 30.0%
TTGTTATAATCTAGTGATCC+AGG + tig0039696:18237-18256 Msa1458700:intergenic 30.0%
CAAAGATGTTTCATTTGATG+CGG - tig0039696:18374-18393 Msa1458700:intron 30.0%
AAAGATGTTTCATTTGATGC+GGG - tig0039696:18375-18394 Msa1458700:intron 30.0%
TGTTAGACTAACTTCATACT+TGG + tig0039696:18500-18519 Msa1458700:intergenic 30.0%
AAATGTGTGAGTCATTAACT+GGG + tig0039696:18659-18678 Msa1458700:intergenic 30.0%
!!! ACTGTGTCTTTTTTCAAATG+TGG - tig0039696:18692-18711 Msa1458700:CDS 30.0%
!!! CTGTGTCTTTTTTCAAATGT+GGG - tig0039696:18693-18712 Msa1458700:CDS 30.0%
!!! TGTGTCTTTTTTCAAATGTG+GGG - tig0039696:18694-18713 Msa1458700:CDS 30.0%
TTTATTATGTTTGCCTTGGT+TGG - tig0039696:18888-18907 Msa1458700:intron 30.0%
! ATTTTTCTACTTTCCAACCA+AGG + tig0039696:18904-18923 Msa1458700:intergenic 30.0%
!! GTCTATCATTTTTCTGTTAC+AGG - tig0039696:18945-18964 Msa1458700:intron 30.0%
! TATTTTCTGTTAGGCTTGAA+GGG + tig0039696:19054-19073 Msa1458700:intergenic 30.0%
! ATATTTTCTGTTAGGCTTGA+AGG + tig0039696:19055-19074 Msa1458700:intergenic 30.0%
! GATTTTATGCCAAATAAGGA+TGG + tig0039696:19286-19305 Msa1458700:intergenic 30.0%
! TCCTTATTTGGCATAAAATC+TGG - tig0039696:19286-19305 Msa1458700:intron 30.0%
! ACCAGATTTTATGCCAAATA+AGG + tig0039696:19290-19309 Msa1458700:intergenic 30.0%
CATAAAATCTGGTACATCTA+TGG - tig0039696:19297-19316 Msa1458700:intron 30.0%
!! CATTAATGCTGATTTGATCA+TGG + tig0039696:19386-19405 Msa1458700:intergenic 30.0%
AAATCAGCATTAATGACAAC+AGG - tig0039696:19391-19410 Msa1458700:CDS 30.0%
! AGAAGATTAGAAAAAGGTAC+TGG + tig0039696:19427-19446 Msa1458700:intergenic 30.0%
TTGTTTCAAAGACTAAACCA+GGG + tig0039696:19766-19785 Msa1458700:intergenic 30.0%
TTTGTTTCAAAGACTAAACC+AGG + tig0039696:19767-19786 Msa1458700:intergenic 30.0%
TTGATGTTTGATATAAGGTC+TGG + tig0039696:19887-19906 Msa1458700:intergenic 30.0%
! GGTAGTTGATGTTTGATATA+AGG + tig0039696:19892-19911 Msa1458700:intergenic 30.0%
TCTCTATAGGAACACTAAAA+AGG - tig0039696:19918-19937 Msa1458700:intron 30.0%
ACAAGAACAGTTACTAATGT+GGG - tig0039696:19962-19981 Msa1458700:intron 30.0%
TAATGCTACATATGTTGCAA+AGG - tig0039696:19991-20010 Msa1458700:CDS 30.0%
CTGAAAACACAAGTTTATTG+GGG + tig0039696:20051-20070 Msa1458700:intergenic 30.0%
! CTCTGAAAACACAAGTTTAT+TGG + tig0039696:20053-20072 Msa1458700:intergenic 30.0%
! TACCTGATTGTGTAACATTT+TGG - tig0039696:20259-20278 Msa1458700:five_prime_UTR 30.0%
GGCTAACTTTATATTGTGTT+TGG - tig0039696:20280-20299 Msa1458700:five_prime_UTR 30.0%
GTGAAATAGATCAAGAGAAT+TGG + tig0039696:20380-20399 Msa1458700:intergenic 30.0%
AAGATTCCATCAAGATGGAA+AGG - tig0039696:16921-16940 Msa1458700:CDS 35.0%
ATCATCCATAGCCTTTAGTA+TGG + tig0039696:17371-17390 Msa1458700:intergenic 35.0%
TTGAATGATCCAATAGCCAT+TGG - tig0039696:17460-17479 Msa1458700:intron 35.0%
CATTTCATGCAGAACAAAGA+GGG - tig0039696:17485-17504 Msa1458700:intron 35.0%
ATTTCATGCAGAACAAAGAG+GGG - tig0039696:17486-17505 Msa1458700:intron 35.0%
TTTCAGTCAACTATTGTCCT+TGG - tig0039696:17613-17632 Msa1458700:CDS 35.0%
TCAACTATTGTCCTTGGAAA+TGG - tig0039696:17619-17638 Msa1458700:CDS 35.0%
TTGAGATCAAGAGACTTACT+TGG + tig0039696:17654-17673 Msa1458700:intergenic 35.0%
!! CTGCGATAATTCTTTTAGCT+TGG + tig0039696:17683-17702 Msa1458700:intergenic 35.0%
TCTATGCTTCATAGGTAGTT+AGG + tig0039696:17707-17726 Msa1458700:intergenic 35.0%
! TGTATAACGAGTTCTGATAC+TGG - tig0039696:18131-18150 Msa1458700:intron 35.0%
ACGATGATCCGAATATTTCA+AGG - tig0039696:18286-18305 Msa1458700:intron 35.0%
AAGGAAAATCAAGAAGCTAG+TGG - tig0039696:18305-18324 Msa1458700:intron 35.0%
AGATTTCCAATCTCTGTGAA+GGG + tig0039696:18408-18427 Msa1458700:intergenic 35.0%
AAGATTTCCAATCTCTGTGA+AGG + tig0039696:18409-18428 Msa1458700:intergenic 35.0%
ACAGAGATTGGAAATCTTGA+AGG - tig0039696:18411-18430 Msa1458700:intron 35.0%
CAGAGATTGGAAATCTTGAA+GGG - tig0039696:18412-18431 Msa1458700:intron 35.0%
AATGTGTGAGTCATTAACTG+GGG + tig0039696:18658-18677 Msa1458700:intergenic 35.0%
CAAATGTGTGAGTCATTAAC+TGG + tig0039696:18660-18679 Msa1458700:intergenic 35.0%
!! AGTATAGGTTTGGAAGTGTT+TGG + tig0039696:18745-18764 Msa1458700:intergenic 35.0%
!! ATTTTGGTCCAAGGAAGTAT+AGG + tig0039696:18760-18779 Msa1458700:intergenic 35.0%
TATCTAGGAACTTCTGTTGT+TGG + tig0039696:18992-19011 Msa1458700:intergenic 35.0%
CAACAGAAGTTCCTAGATAT+AGG - tig0039696:18993-19012 Msa1458700:CDS 35.0%
GATGAGAATGATGCAACAAT+TGG + tig0039696:19025-19044 Msa1458700:intergenic 35.0%
CTTGCGTAACTATTGATACT+TGG + tig0039696:19129-19148 Msa1458700:intergenic 35.0%
CAAGTATCAATAGTTACGCA+AGG - tig0039696:19127-19146 Msa1458700:intron 35.0%
GCATTCATCAAATCAGTACA+TGG - tig0039696:19346-19365 Msa1458700:CDS 35.0%
TCAAATCAGTACATGGAAGA+TGG - tig0039696:19353-19372 Msa1458700:CDS 35.0%
!! AATGCTGATTTGATCATGGA+AGG + tig0039696:19382-19401 Msa1458700:intergenic 35.0%
! ACACTTTCAATCTGAGATGT+TGG + tig0039696:19463-19482 Msa1458700:intergenic 35.0%
CTACAACCTACAATAACATG+AGG - tig0039696:19657-19676 Msa1458700:CDS 35.0%
TAATTTGAGCTATTGGTCAC+TGG + tig0039696:19686-19705 Msa1458700:intergenic 35.0%
GGCAAAGTAATTTGAGCTAT+TGG + tig0039696:19693-19712 Msa1458700:intergenic 35.0%
AGTGTTCCTATAGAGATTGA+CGG + tig0039696:19914-19933 Msa1458700:intergenic 35.0%
CACAAGAACAGTTACTAATG+TGG - tig0039696:19961-19980 Msa1458700:intron 35.0%
ACCTATAAAGTCTCATTCTC+AGG - tig0039696:20088-20107 Msa1458700:five_prime_UTR 35.0%
TCCTGAGAATGAGACTTTAT+AGG + tig0039696:20092-20111 Msa1458700:intergenic 35.0%
ACAATATTGGGTCTCTAACA+TGG - tig0039696:20131-20150 Msa1458700:five_prime_UTR 35.0%
AGCCAAAATGTTACACAATC+AGG + tig0039696:20264-20283 Msa1458700:intergenic 35.0%
TTGTCAATGAGACATAGTCT+TGG - tig0039696:20351-20370 Msa1458700:five_prime_UTR 35.0%
ATTCTATGTGTGAGCAGATG+TGG + tig0039696:16653-16672 Msa1458700:intergenic 40.0%
CTATCTCTGTTCTGCATCAA+GGG - tig0039696:16856-16875 Msa1458700:CDS 40.0%
TCACCAAGTTTCAGAGATGA+GGG - tig0039696:16891-16910 Msa1458700:CDS 40.0%
!! ATACCCTCATCTCTGAAACT+TGG + tig0039696:16897-16916 Msa1458700:intergenic 40.0%
! AGTTTCAGAGATGAGGGTAT+AGG - tig0039696:16897-16916 Msa1458700:CDS 40.0%
! GTTTCAGAGATGAGGGTATA+GGG - tig0039696:16898-16917 Msa1458700:CDS 40.0%
TAGGGAAGATTCCATCAAGA+TGG - tig0039696:16916-16935 Msa1458700:CDS 40.0%
CAAACTCCTTTCCATCTTGA+TGG + tig0039696:16930-16949 Msa1458700:intergenic 40.0%
AAGATGGAAAGGAGTTTGCA+TGG - tig0039696:16932-16951 Msa1458700:CDS 40.0%
GGTAGCAACAAGACTCATAT+TGG - tig0039696:17160-17179 Msa1458700:CDS 40.0%
AGCAACAAGACTCATATTGG+AGG - tig0039696:17163-17182 Msa1458700:CDS 40.0%
TTAGCAAAAGGAACAGCAAG+AGG - tig0039696:17280-17299 Msa1458700:CDS 40.0%
! TTCAGGTTCCACCATACTAA+AGG - tig0039696:17357-17376 Msa1458700:intron 40.0%
TTCCACCATACTAAAGGCTA+TGG - tig0039696:17363-17382 Msa1458700:intron 40.0%
ATCCATAGCCTTTAGTATGG+TGG + tig0039696:17368-17387 Msa1458700:intergenic 40.0%
ATGGATGATGCTATCAAGGA+TGG - tig0039696:17382-17401 Msa1458700:intron 40.0%
TGAAATGCTCCAATGGCTAT+TGG + tig0039696:17472-17491 Msa1458700:intergenic 40.0%
TTCTGCATGAAATGCTCCAA+TGG + tig0039696:17479-17498 Msa1458700:intergenic 40.0%
GCATTTCATGCAGAACAAAG+AGG - tig0039696:17484-17503 Msa1458700:intron 40.0%
GCTGCAACTGTAAATATCCA+TGG + tig0039696:17574-17593 Msa1458700:intergenic 40.0%
! GGAAACGTTTTCCATTTCCA+AGG + tig0039696:17633-17652 Msa1458700:intergenic 40.0%
GTCTAGTGTCTATGCTTCAT+AGG + tig0039696:17715-17734 Msa1458700:intergenic 40.0%
ACGATGCATTCTCTTGTCTT+TGG - tig0039696:17934-17953 Msa1458700:CDS 40.0%
! TACTGGTTAGCAACAACTGT+TGG - tig0039696:18148-18167 Msa1458700:intron 40.0%
ACTGGTTAGCAACAACTGTT+GGG - tig0039696:18149-18168 Msa1458700:intron 40.0%
CTAAGTGTTCTTTGAACTGC+AGG - tig0039696:18202-18221 Msa1458700:intron 40.0%
TTGCAGAAACAATTACGCTG+TGG - tig0039696:18569-18588 Msa1458700:CDS 40.0%
CTTCCAAACCTATACTTCCT+TGG - tig0039696:18749-18768 Msa1458700:intron 40.0%
GTTGGAAGAATTGTAGCAGT+TGG + tig0039696:18974-18993 Msa1458700:intergenic 40.0%
AATGATGCAACAATTGGTGC+AGG + tig0039696:19019-19038 Msa1458700:intergenic 40.0%
GTTGCATCATTCTCATCTAG+AGG - tig0039696:19028-19047 Msa1458700:CDS 40.0%
GAAATGCATGTTGGAACACA+TGG + tig0039696:19096-19115 Msa1458700:intergenic 40.0%
TATTGTCAAGCCTGATGTCA+TGG - tig0039696:19186-19205 Msa1458700:intron 40.0%
CTCATCACTATTGGGAATCA+TGG + tig0039696:19236-19255 Msa1458700:intergenic 40.0%
TTTCCTGGCTCATCACTATT+GGG + tig0039696:19244-19263 Msa1458700:intergenic 40.0%
ATTTCCTGGCTCATCACTAT+TGG + tig0039696:19245-19264 Msa1458700:intergenic 40.0%
!! AAGGATGGCTTTTTCCCAAT+CGG + tig0039696:19271-19290 Msa1458700:intergenic 40.0%
GGGAAAAAGCCATCCTTATT+TGG - tig0039696:19274-19293 Msa1458700:intron 40.0%
TGGCTTCCTCATGTTATTGT+AGG + tig0039696:19666-19685 Msa1458700:intergenic 40.0%
TTTGCCAACCCACATGAAAT+GGG - tig0039696:19707-19726 Msa1458700:CDS 40.0%
GTTTGATATAAGGTCTGGAG+AGG + tig0039696:19882-19901 Msa1458700:intergenic 40.0%
AACTACCCGTCAATCTCTAT+AGG - tig0039696:19905-19924 Msa1458700:intron 40.0%
GTGTTCCTATAGAGATTGAC+GGG + tig0039696:19913-19932 Msa1458700:intergenic 40.0%
!! ACCTGAAGGATTGGTTGTTA+AGG - tig0039696:20021-20040 Msa1458700:five_prime_UTR 40.0%
ACCTTAACAACCAATCCTTC+AGG + tig0039696:20025-20044 Msa1458700:intergenic 40.0%
AGTCTCATTCTCAGGAAACA+AGG - tig0039696:20096-20115 Msa1458700:five_prime_UTR 40.0%
CCTTGATGCAGAACAGAGAT+AGG + tig0039696:16858-16877 Msa1458700:intergenic 45.0%
CCTATCTCTGTTCTGCATCA+AGG - tig0039696:16855-16874 Msa1458700:CDS 45.0%
CTGTTCTGCATCAAGGGATA+TGG - tig0039696:16862-16881 Msa1458700:CDS 45.0%
!! TCTCTGAAACTTGGTGACTC+TGG + tig0039696:16888-16907 Msa1458700:intergenic 45.0%
GTCACCAAGTTTCAGAGATG+AGG - tig0039696:16890-16909 Msa1458700:CDS 45.0%
ATGGAAAGGAGTTTGCATGG+AGG - tig0039696:16935-16954 Msa1458700:CDS 45.0%
ACTCATATTGGAGGAGCCAA+AGG - tig0039696:17172-17191 Msa1458700:CDS 45.0%
AGAATCTCTCGGTGAACCTT+TGG + tig0039696:17191-17210 Msa1458700:intergenic 45.0%
CCATGTCCAACAGAATCTCT+CGG + tig0039696:17202-17221 Msa1458700:intergenic 45.0%
TAGGCAGCAATCCTAGTTGA+AGG + tig0039696:17313-17332 Msa1458700:intergenic 45.0%
GGCTATGGATGATGCTATCA+AGG - tig0039696:17378-17397 Msa1458700:intron 45.0%
TCATGGTTGTGTGTTCAGCT+GGG - tig0039696:17509-17528 Msa1458700:intron 45.0%
TTCACAACAGTGGAAGGATC+AGG + tig0039696:17544-17563 Msa1458700:intergenic 45.0%
AATGCATCGTTGAGCGTGTA+AGG + tig0039696:17924-17943 Msa1458700:intergenic 45.0%
AGGTACCTAGCTTCTGATGT+TGG + tig0039696:17985-18004 Msa1458700:intergenic 45.0%
AACTGCAGGAACTGTTATCC+TGG - tig0039696:18216-18235 Msa1458700:intron 45.0%
AGCTAGTGGTACAAGATGCA+AGG - tig0039696:18319-18338 Msa1458700:intron 45.0%
GCTAGTGGTACAAGATGCAA+GGG - tig0039696:18320-18339 Msa1458700:intron 45.0%
GCATTTCCCTTCACAGAGAT+TGG - tig0039696:18399-18418 Msa1458700:intron 45.0%
AGTCATTAACTGGGGAATCC+AGG + tig0039696:18650-18669 Msa1458700:intergenic 45.0%
GCTCTTTGCAACTACAGATC+TGG + tig0039696:18723-18742 Msa1458700:intergenic 45.0%
! GGTCCAAGGAAGTATAGGTT+TGG + tig0039696:18755-18774 Msa1458700:intergenic 45.0%
ATTGGTGCAGGCCTATATCT+AGG + tig0039696:19007-19026 Msa1458700:intergenic 45.0%
ATTCCCAATAGTGATGAGCC+AGG - tig0039696:19238-19257 Msa1458700:intron 45.0%
AGCCAGGAAATGTTCCGATT+GGG - tig0039696:19254-19273 Msa1458700:intron 45.0%
TTCCCAATCGGAACATTTCC+TGG + tig0039696:19259-19278 Msa1458700:intergenic 45.0%
TGCCTGAAAATGACACGTGT+GGG + tig0039696:19495-19514 Msa1458700:intergenic 45.0%
!!! ACACGTGTCATTTTCAGGCA+CGG - tig0039696:19495-19514 Msa1458700:CDS 45.0%
CTTTGCCAACCCACATGAAA+TGG - tig0039696:19706-19725 Msa1458700:CDS 45.0%
AACTCCCATTTCATGTGGGT+TGG + tig0039696:19714-19733 Msa1458700:intergenic 45.0%
AACCCACATGAAATGGGAGT+TGG - tig0039696:19713-19732 Msa1458700:CDS 45.0%
CTCCAACTCCCATTTCATGT+GGG + tig0039696:19718-19737 Msa1458700:intergenic 45.0%
TCTCCAACTCCCATTTCATG+TGG + tig0039696:19719-19738 Msa1458700:intergenic 45.0%
CTCGCGGTGGATACAATATT+GGG - tig0039696:20119-20138 Msa1458700:five_prime_UTR 45.0%
GGTTCACCGAGAGATTCTGT+TGG - tig0039696:17193-17212 Msa1458700:CDS 50.0%
CCGAGAGATTCTGTTGGACA+TGG - tig0039696:17199-17218 Msa1458700:CDS 50.0%
GCAAAAGGAACAGCAAGAGG+TGG - tig0039696:17283-17302 Msa1458700:CDS 50.0%
!! TGCTCTGAAGAAGGCTGTTC+AGG - tig0039696:17340-17359 Msa1458700:intron 50.0%
TGCAGAACAAAGAGGGGTCA+TGG - tig0039696:17492-17511 Msa1458700:intron 50.0%
GTCATGGTTGTGTGTTCAGC+TGG - tig0039696:17508-17527 Msa1458700:intron 50.0%
GTGTGTTCAGCTGGGAATGA+TGG - tig0039696:17517-17536 Msa1458700:intron 50.0%
GCTGTGTTCACAACAGTGGA+AGG + tig0039696:17550-17569 Msa1458700:intergenic 50.0%
!! TGGTGCTGTGTTCACAACAG+TGG + tig0039696:17554-17573 Msa1458700:intergenic 50.0%
CTGTTGTGAACACAGCACCA+TGG - tig0039696:17554-17573 Msa1458700:intron 50.0%
TGTTTGTGTTGTCAGGGTGC+TGG - tig0039696:17883-17902 Msa1458700:intron 50.0%
GTACAAGATGCAAGGGCCAT+GGG - tig0039696:18327-18346 Msa1458700:intron 50.0%
TACAAGATGCAAGGGCCATG+GGG - tig0039696:18328-18347 Msa1458700:intron 50.0%
GCTGACGAATATCATCCCCA+TGG + tig0039696:18346-18365 Msa1458700:intergenic 50.0%
GGGAATCATGGCAGCCAAAA+TGG + tig0039696:19224-19243 Msa1458700:intergenic 50.0%
GAGCCAGGAAATGTTCCGAT+TGG - tig0039696:19253-19272 Msa1458700:intron 50.0%
AATGACACGTGTGGGACATC+AGG + tig0039696:19487-19506 Msa1458700:intergenic 50.0%
!!! GTCCCACACGTGTCATTTTC+AGG - tig0039696:19490-19509 Msa1458700:CDS 50.0%
GTGCCTGAAAATGACACGTG+TGG + tig0039696:19496-19515 Msa1458700:intergenic 50.0%
! AGACCAATGTCACTTGCCCA+AGG - tig0039696:19855-19874 Msa1458700:intron 50.0%
TAAGGTCTGGAGAGGTCCTT+GGG + tig0039696:19874-19893 Msa1458700:intergenic 50.0%
ATAAGGTCTGGAGAGGTCCT+TGG + tig0039696:19875-19894 Msa1458700:intergenic 50.0%
TTCTCAGGAAACAAGGCTCG+CGG - tig0039696:20103-20122 Msa1458700:five_prime_UTR 50.0%
GCTCGCGGTGGATACAATAT+TGG - tig0039696:20118-20137 Msa1458700:five_prime_UTR 50.0%
GGGTCTCTAACATGGCTTGA+TGG - tig0039696:20139-20158 Msa1458700:five_prime_UTR 50.0%
CACACTGCATCAACAGCAGC+TGG - tig0039696:17226-17245 Msa1458700:CDS 55.0%
GAGGTGGTTCGCCTTCAACT+AGG - tig0039696:17299-17318 Msa1458700:intron 55.0%
TCGCGCCAACATCAGAAGCT+AGG - tig0039696:17977-17996 Msa1458700:CDS 55.0%
GGTACAAGATGCAAGGGCCA+TGG - tig0039696:18326-18345 Msa1458700:intron 55.0%
GCAGTCACGATGTAGTTGCG+TGG - tig0039696:18623-18642 Msa1458700:CDS 55.0%
ACGATGTAGTTGCGTGGACC+TGG - tig0039696:18629-18648 Msa1458700:CDS 55.0%
AAGCCTGATGTCATGGCTCC+AGG - tig0039696:19193-19212 Msa1458700:intron 55.0%
ACTCCTGGAGCCATGACATC+AGG + tig0039696:19199-19218 Msa1458700:intergenic 55.0%
!! GGCTCCAGGAGTTGCCATTT+TGG - tig0039696:19207-19226 Msa1458700:intron 55.0%
GCAGCCAAAATGGCAACTCC+TGG + tig0039696:19214-19233 Msa1458700:intergenic 55.0%
! ATGGCTTGCCCACATGTGAC+TGG - tig0039696:19316-19335 Msa1458700:CDS 55.0%
! TGGCTTGCCCACATGTGACT+GGG - tig0039696:19317-19336 Msa1458700:CDS 55.0%
!! CCAGGGTTGAGAGCTTTGAG+TGG + tig0039696:19749-19768 Msa1458700:intergenic 55.0%
CCACTCAAAGCTCTCAACCC+TGG - tig0039696:19746-19765 Msa1458700:CDS 55.0%
GGTCCTTGGGCAAGTGACAT+TGG + tig0039696:19861-19880 Msa1458700:intergenic 55.0%
! GCAAAGGTGCATGCACCTGA+AGG - tig0039696:20007-20026 Msa1458700:exon 55.0%
GGTGCATGCACCTGAAGGAT+TGG - tig0039696:20012-20031 Msa1458700:exon 55.0%
GGCTTGCCCACATGTGACTG+GGG - tig0039696:19318-19337 Msa1458700:CDS 60.0%
CTGCAGCCCCAGTCACATGT+GGG + tig0039696:19327-19346 Msa1458700:intergenic 60.0%
TCAGGAAACAAGGCTCGCGG+TGG - tig0039696:20106-20125 Msa1458700:five_prime_UTR 60.0%
GCTGCAGCCCCAGTCACATG+TGG + tig0039696:19328-19347 Msa1458700:intergenic 65.0%
Chromosome Type Strat End Strand Name
tig0039696 gene 16555 20412 16555 ID=Msa1458700;Name=Msa1458700
tig0039696 mRNA 16555 20412 16555 ID=Msa1458700-mRNA-1;Parent=Msa1458700;Name=Msa1458700-mRNA-1;_AED=0.11;_eAED=0.11;_QI=396|1|1|1|1|1|7|208|599
tig0039696 exon 16555 17310 16555 ID=Msa1458700-mRNA-1:exon:21893;Parent=Msa1458700-mRNA-1
tig0039696 exon 17555 17771 17555 ID=Msa1458700-mRNA-1:exon:21892;Parent=Msa1458700-mRNA-1
tig0039696 exon 17886 18000 17886 ID=Msa1458700-mRNA-1:exon:21891;Parent=Msa1458700-mRNA-1
tig0039696 exon 18501 18743 18501 ID=Msa1458700-mRNA-1:exon:21890;Parent=Msa1458700-mRNA-1
tig0039696 exon 18969 19069 18969 ID=Msa1458700-mRNA-1:exon:21889;Parent=Msa1458700-mRNA-1
tig0039696 exon 19313 19850 19313 ID=Msa1458700-mRNA-1:exon:21888;Parent=Msa1458700-mRNA-1
tig0039696 exon 19979 20412 19979 ID=Msa1458700-mRNA-1:exon:21887;Parent=Msa1458700-mRNA-1
tig0039696 five_prime_UTR 20017 20412 20017 ID=Msa1458700-mRNA-1:five_prime_utr;Parent=Msa1458700-mRNA-1
tig0039696 CDS 19979 20016 19979 ID=Msa1458700-mRNA-1:cds;Parent=Msa1458700-mRNA-1
tig0039696 CDS 19313 19850 19313 ID=Msa1458700-mRNA-1:cds;Parent=Msa1458700-mRNA-1
tig0039696 CDS 18969 19069 18969 ID=Msa1458700-mRNA-1:cds;Parent=Msa1458700-mRNA-1
tig0039696 CDS 18501 18743 18501 ID=Msa1458700-mRNA-1:cds;Parent=Msa1458700-mRNA-1
tig0039696 CDS 17886 18000 17886 ID=Msa1458700-mRNA-1:cds;Parent=Msa1458700-mRNA-1
tig0039696 CDS 17555 17771 17555 ID=Msa1458700-mRNA-1:cds;Parent=Msa1458700-mRNA-1
tig0039696 CDS 16763 17310 16763 ID=Msa1458700-mRNA-1:cds;Parent=Msa1458700-mRNA-1
tig0039696 three_prime_UTR 16555 16762 16555 ID=Msa1458700-mRNA-1:three_prime_utr;Parent=Msa1458700-mRNA-1
Gene Sequence

>Msa1458700

ATGGAGGCTCATGATTTCAAGAAATCTAATTGCAACAGGAAATTGATAGGTGCAAGATACTATACTACACAAGATACATTCGGTAGCAACAAGACTCATATTGGAGGAGCCAAAGGTTCACCGAGAGATTCTGTTGGACATGGAACTCACACTGCATCAACAGCAGCTGGTGTCAATGTTAACAATGCAAGTTATTATGGTTTAGCAAAAGGAACAGCAAGAGGTGGTTCGCCTTCAACTAGGATTGCTGCCTATAAAACATGCTCTGAAGAAGGCTGTTCAGGTTCCACCATACTAAAGGCTATGGATGATGCTATCAAGGATGGAGTAGATATAATCTCAATATCTATTGGACTTAGCTCACTGATGCAATCAGATTATTTGAATGATCCAATAGCCATTGGAGCATTTCATGCAGAACAAAGAGGGGTCATGGTTGTGTGTTCAGCTGGGAATGATGGTCCTGATCCTTCCACTGTTGTGAACACAGCACCATGGATATTTACAGTTGCAGCTTCTAATATTGATAGGAACTTTCAGTCAACTATTGTCCTTGGAAATGGAAAACGTTTCCAAGGTGCTGGCATTAACTTCTCAAACCTTACACGCTCAACGATGCATTCTCTTGTCTTTGGAGATGAAGTTGCTGCTGAATTCGCGCCAACATCAGAAGCTAGGAACTGTTATCCTGGATCACTAGATTATAACAAAATAGCAGGCAGCATAGTTGTCTGTGTTGACGATGATCCGAATATTTCAAGGAAAATCAAGAAGCTAGTGGTACAAGATGCAAGGGCCATGGGGATGATATTCGTCAGCGAGAACAACAAAGATGTTTCATTTGATGCGGGTGCATTTCCCTTCACAGAGATTGGAAATCTTGAAGGGCAACAGATCTTTCAGTACATAAACTCAACCAAGAAACCAACTGCTACAATTCTTCCAACAACAGAAGTTCCTAGATATAGGCCTGCACCAATTGTTGCATCATTCTCATCTAGAGGCCCTTCAAGCCTAACAGAAAATATTCTTAAGCCTGATGTCATGGCTCCAGGAGTTGCCATTTTGGCTGCCATGATTCCCAATAGTGATGAGCCAGGAAATGTTCCGATTGGGAAAAAGCCATCCTTATTTGGCATAAAATCTGGTACATCTATGGCTTGCCCACATGTGACTGGGGCTGCAGCATTCATCAAATCAGTACATGGAAGATGGACTCCTTCCATGATCAAATCAGCATTAATGACAACAGCTACAACCTACAATAACATGAGGAAGCCAGTGACCAATAGCTCAAATTACTTTGCCAACCCACATGAAATGGGAGTTGGAGAAATTAATCCACTCAAAGCTCTCAACCCTGGTTTAGTCTTTGAAACAAATCTAGAAGACTACATCAGATTCCTTTGTTATTATGGTTATTCAAATAAAATCATAAGGTCAGTGTCGAAGACCAATGTCACTTGCCCAAGGACCTCTCCAGACCTTATATCAAACATCAACTACCCGTCAATCTCTATAGGAACACTAAAAAGGAATCAGAATGCAAAAGTGATCACAAGAACAGTTACTAATGTGGGAACATTTAATGCTACATATGTTGCAAAGGTGCATGCACCTGAAGGATTGGTTGTTAAGGTCATCCCCAATAAACTTGTGTTTTCAGAGAGTGTTCAAAGAATTACCTATAAAGTCTCATTCTCAGGAAACAAGGCTCGCGGTGGATACAATATTGGGTCTCTAACATGGCTTGATGGTCGACATTACGTTCATACACTATTTGCAGTCAAAGTTGAATAA
Protein sequence

>Msa1458700

MEAHDFKKSNCNRKLIGARYYTTQDTFGSNKTHIGGAKGSPRDSVGHGTHTASTAAGVNVNNASYYGLAKGTARGGSPSTRIAAYKTCSEEGCSGSTILKAMDDAIKDGVDIISISIGLSSLMQSDYLNDPIAIGAFHAEQRGVMVVCSAGNDGPDPSTVVNTAPWIFTVAASNIDRNFQSTIVLGNGKRFQGAGINFSNLTRSTMHSLVFGDEVAAEFAPTSEARNCYPGSLDYNKIAGSIVVCVDDDPNISRKIKKLVVQDARAMGMIFVSENNKDVSFDAGAFPFTEIGNLEGQQIFQYINSTKKPTATILPTTEVPRYRPAPIVASFSSRGPSSLTENILKPDVMAPGVAILAAMIPNSDEPGNVPIGKKPSLFGIKSGTSMACPHVTGAAAFIKSVHGRWTPSMIKSALMTTATTYNNMRKPVTNSSNYFANPHEMGVGEINPLKALNPGLVFETNLEDYIRFLCYYGYSNKIIRSVSKTNVTCPRTSPDLISNINYPSISIGTLKRNQNAKVITRTVTNVGTFNATYVAKVHAPEGLVVKVIPNKLVFSESVQRITYKVSFSGNKARGGYNIGSLTWLDGRHYVHTLFAVKVE*