Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1460940 | PNY08703.1 | 51.724 | 464 | 182 | 4 | 648 | 1072 | 183 | 643 | 1.14e-146 | 479 |
| Msa1460940 | PNY08703.1 | 70.779 | 1143 | 173 | 14 | 1 | 1068 | 53 | 1109 | 0.0 | 1577 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1460940 | sp|Q9FFN2|GLYT3_ARATH | 46.584 | 322 | 165 | 3 | 261 | 579 | 170 | 487 | 8.11e-93 | 309 |
| Msa1460940 | sp|Q9FFN2|GLYT3_ARATH | 41.108 | 343 | 172 | 3 | 771 | 1084 | 170 | 511 | 1.02e-83 | 284 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1460940 | A0A2K3P0E0 | 51.724 | 464 | 182 | 4 | 648 | 1072 | 183 | 643 | 5.44e-147 | 479 |
| Msa1460940 | A0A2K3P0E0 | 70.779 | 1143 | 173 | 14 | 1 | 1068 | 53 | 1109 | 0.0 | 1577 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1356550 | Msa1460940 | 0.905946 | 2.505324e-80 | -8.615850e-47 |
| Msa0383620 | Msa1460940 | 0.901605 | 2.262873e-78 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1460940 | MtrunA17_Chr3g0140131 | 89.597 | 596 | 43 | 3 | 1 | 593 | 1 | 580 | 0.0 | 1085 |
| Msa1460940 | MtrunA17_Chr3g0140131 | 50.965 | 518 | 200 | 7 | 622 | 1085 | 74 | 591 | 6.11e-171 | 515 |
| Msa1460940 | MtrunA17_Chr3g0140141 | 86.740 | 543 | 30 | 2 | 588 | 1088 | 10 | 552 | 0.0 | 940 |
| Msa1460940 | MtrunA17_Chr3g0140141 | 56.222 | 450 | 191 | 2 | 146 | 593 | 93 | 538 | 0.0 | 540 |
| Msa1460940 | MtrunA17_Chr1g0146181 | 63.350 | 603 | 181 | 8 | 1 | 593 | 1 | 573 | 0.0 | 756 |
| Msa1460940 | MtrunA17_Chr1g0146181 | 58.853 | 401 | 135 | 2 | 715 | 1085 | 184 | 584 | 2.03e-170 | 513 |
| Msa1460940 | MtrunA17_Chr7g0265381 | 86.686 | 353 | 47 | 0 | 235 | 587 | 2 | 354 | 0.0 | 654 |
| Msa1460940 | MtrunA17_Chr7g0265381 | 59.459 | 370 | 121 | 1 | 745 | 1085 | 2 | 371 | 5.17e-161 | 481 |
| Msa1460940 | MtrunA17_Chr8g0390121 | 64.062 | 384 | 137 | 1 | 211 | 593 | 213 | 596 | 0.0 | 544 |
| Msa1460940 | MtrunA17_Chr8g0390121 | 53.659 | 451 | 174 | 3 | 665 | 1085 | 162 | 607 | 7.85e-169 | 510 |
| Msa1460940 | MtrunA17_Chr1g0197381 | 56.440 | 427 | 167 | 5 | 180 | 593 | 114 | 534 | 5.27e-162 | 490 |
| Msa1460940 | MtrunA17_Chr1g0197381 | 57.377 | 366 | 121 | 2 | 749 | 1084 | 184 | 544 | 3.24e-146 | 449 |
| Msa1460940 | MtrunA17_Chr4g0055991 | 57.459 | 362 | 148 | 4 | 238 | 593 | 161 | 522 | 2.14e-139 | 431 |
| Msa1460940 | MtrunA17_Chr4g0055991 | 51.538 | 390 | 148 | 6 | 730 | 1084 | 149 | 532 | 1.26e-128 | 402 |
| Msa1460940 | MtrunA17_Chr7g0265451 | 44.417 | 403 | 199 | 8 | 205 | 593 | 110 | 501 | 9.56e-106 | 341 |
| Msa1460940 | MtrunA17_Chr7g0265451 | 41.622 | 370 | 171 | 6 | 750 | 1084 | 152 | 511 | 7.87e-91 | 301 |
| Msa1460940 | MtrunA17_Chr7g0265461 | 44.384 | 365 | 192 | 5 | 236 | 593 | 24 | 384 | 1.18e-97 | 315 |
| Msa1460940 | MtrunA17_Chr7g0265461 | 39.547 | 397 | 201 | 6 | 724 | 1084 | 1 | 394 | 1.01e-86 | 285 |
| Msa1460940 | MtrunA17_Chr3g0131051 | 41.192 | 369 | 202 | 4 | 236 | 593 | 113 | 477 | 1.76e-94 | 310 |
| Msa1460940 | MtrunA17_Chr3g0131051 | 40.260 | 385 | 196 | 6 | 732 | 1084 | 105 | 487 | 1.52e-90 | 299 |
| Msa1460940 | MtrunA17_Chr1g0179651 | 46.526 | 331 | 165 | 5 | 269 | 593 | 1 | 325 | 1.37e-91 | 296 |
| Msa1460940 | MtrunA17_Chr1g0179651 | 42.342 | 333 | 161 | 4 | 782 | 1084 | 4 | 335 | 2.77e-83 | 274 |
| Msa1460940 | MtrunA17_Chr3g0120131 | 41.667 | 384 | 204 | 5 | 226 | 593 | 89 | 468 | 5.91e-89 | 295 |
| Msa1460940 | MtrunA17_Chr3g0120131 | 38.684 | 380 | 191 | 4 | 746 | 1084 | 100 | 478 | 1.35e-80 | 271 |
| Msa1460940 | MtrunA17_Chr3g0119721 | 44.444 | 324 | 173 | 3 | 273 | 593 | 11 | 330 | 1.55e-87 | 286 |
| Msa1460940 | MtrunA17_Chr3g0119721 | 39.879 | 331 | 169 | 3 | 783 | 1084 | 11 | 340 | 2.71e-76 | 255 |
| Msa1460940 | MtrunA17_Chr3g0137491 | 46.372 | 317 | 162 | 4 | 268 | 579 | 50 | 363 | 3.77e-86 | 284 |
| Msa1460940 | MtrunA17_Chr3g0137491 | 39.233 | 339 | 173 | 5 | 778 | 1084 | 50 | 387 | 7.90e-75 | 253 |
| Msa1460940 | MtrunA17_Chr4g0064471 | 39.452 | 365 | 200 | 8 | 236 | 583 | 86 | 446 | 4.69e-78 | 264 |
| Msa1460940 | MtrunA17_Chr4g0064471 | 36.182 | 351 | 180 | 7 | 773 | 1084 | 121 | 466 | 1.84e-68 | 238 |
| Msa1460940 | MtrunA17_Chr4g0064411 | 39.167 | 360 | 200 | 7 | 236 | 580 | 80 | 435 | 2.68e-76 | 259 |
| Msa1460940 | MtrunA17_Chr4g0064411 | 32.918 | 401 | 217 | 11 | 731 | 1084 | 63 | 458 | 4.29e-62 | 219 |
| Msa1460940 | MtrunA17_Chr4g0064461 | 36.712 | 365 | 201 | 10 | 236 | 579 | 82 | 437 | 5.99e-68 | 236 |
| Msa1460940 | MtrunA17_Chr4g0064461 | 34.188 | 351 | 187 | 7 | 773 | 1084 | 116 | 461 | 9.49e-59 | 210 |
| Msa1460940 | MtrunA17_Chr5g0411991 | 34.783 | 345 | 208 | 8 | 255 | 593 | 68 | 401 | 3.89e-62 | 218 |
| Msa1460940 | MtrunA17_Chr5g0411991 | 33.077 | 390 | 206 | 12 | 726 | 1080 | 38 | 407 | 2.64e-56 | 201 |
| Msa1460940 | MtrunA17_Chr7g0253441 | 36.364 | 352 | 178 | 14 | 263 | 593 | 141 | 467 | 1.32e-53 | 195 |
| Msa1460940 | MtrunA17_Chr7g0253441 | 31.566 | 396 | 198 | 15 | 734 | 1083 | 108 | 476 | 1.14e-44 | 169 |
| Msa1460940 | MtrunA17_Chr5g0421571 | 37.383 | 214 | 119 | 6 | 770 | 978 | 126 | 329 | 7.20e-36 | 139 |
| Msa1460940 | MtrunA17_Chr5g0421571 | 35.398 | 226 | 130 | 7 | 255 | 475 | 121 | 335 | 4.29e-34 | 134 |
| Msa1460940 | MtrunA17_Chr8g0385671 | 28.617 | 311 | 193 | 9 | 281 | 569 | 50 | 353 | 3.42e-24 | 106 |
| Msa1460940 | MtrunA17_Chr8g0385651 | 28.344 | 314 | 190 | 10 | 281 | 569 | 50 | 353 | 7.39e-24 | 105 |
| Msa1460940 | MtrunA17_Chr4g0043801 | 28.014 | 282 | 166 | 7 | 323 | 581 | 163 | 430 | 1.22e-19 | 93.6 |
| Msa1460940 | MtrunA17_Chr2g0320251 | 25.625 | 320 | 202 | 9 | 277 | 569 | 85 | 395 | 2.81e-19 | 92.0 |
| Msa1460940 | MtrunA17_Chr4g0028201 | 25.392 | 319 | 176 | 10 | 279 | 557 | 105 | 401 | 2.88e-17 | 86.3 |
| Msa1460940 | MtrunA17_Chr7g0254391 | 26.545 | 275 | 172 | 6 | 322 | 579 | 190 | 451 | 7.03e-17 | 85.1 |
| Msa1460940 | MtrunA17_Chr3g0122631 | 25.704 | 284 | 175 | 9 | 323 | 585 | 119 | 387 | 1.70e-16 | 83.6 |
| Msa1460940 | MtrunA17_Chr4g0039811 | 30.493 | 223 | 139 | 6 | 372 | 581 | 224 | 443 | 2.38e-16 | 83.6 |
| Msa1460940 | MtrunA17_Chr3g0092341 | 25.368 | 272 | 188 | 6 | 318 | 579 | 185 | 451 | 7.56e-16 | 82.0 |
| Msa1460940 | MtrunA17_Chr6g0460631 | 26.351 | 296 | 177 | 10 | 314 | 587 | 177 | 453 | 5.49e-15 | 79.3 |
| Msa1460940 | MtrunA17_Chr8g0377331 | 25.161 | 310 | 188 | 10 | 303 | 585 | 93 | 385 | 1.55e-14 | 77.4 |
| Msa1460940 | MtrunA17_Chr1g0159421 | 24.771 | 327 | 213 | 11 | 275 | 576 | 68 | 386 | 2.02e-13 | 73.9 |
| Msa1460940 | MtrunA17_Chr1g0200871 | 25.000 | 328 | 185 | 12 | 303 | 581 | 115 | 430 | 4.46e-13 | 73.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1460940 | AT4G32790.1 | 51.282 | 585 | 245 | 10 | 15 | 593 | 30 | 580 | 0.0 | 573 |
| Msa1460940 | AT4G32790.1 | 47.538 | 528 | 226 | 8 | 608 | 1085 | 65 | 591 | 3.56e-156 | 477 |
| Msa1460940 | AT4G32790.3 | 51.282 | 585 | 245 | 10 | 15 | 593 | 30 | 580 | 0.0 | 573 |
| Msa1460940 | AT4G32790.3 | 47.538 | 528 | 226 | 8 | 608 | 1085 | 65 | 591 | 3.56e-156 | 477 |
| Msa1460940 | AT4G32790.2 | 51.282 | 585 | 245 | 10 | 15 | 593 | 30 | 580 | 0.0 | 573 |
| Msa1460940 | AT4G32790.2 | 47.538 | 528 | 226 | 8 | 608 | 1085 | 65 | 591 | 3.56e-156 | 477 |
| Msa1460940 | AT5G25820.1 | 48.523 | 643 | 277 | 13 | 1 | 593 | 1 | 639 | 0.0 | 568 |
| Msa1460940 | AT5G25820.1 | 55.024 | 418 | 154 | 5 | 705 | 1088 | 236 | 653 | 5.99e-158 | 484 |
| Msa1460940 | AT5G19670.1 | 63.049 | 387 | 142 | 1 | 208 | 593 | 208 | 594 | 0.0 | 546 |
| Msa1460940 | AT5G19670.1 | 56.359 | 401 | 145 | 1 | 715 | 1085 | 205 | 605 | 4.69e-167 | 506 |
| Msa1460940 | AT5G19670.2 | 63.049 | 387 | 142 | 1 | 208 | 593 | 208 | 594 | 0.0 | 546 |
| Msa1460940 | AT5G19670.2 | 56.359 | 401 | 145 | 1 | 715 | 1085 | 205 | 605 | 4.69e-167 | 506 |
| Msa1460940 | AT5G37000.1 | 60.519 | 385 | 150 | 2 | 210 | 593 | 155 | 538 | 5.61e-166 | 501 |
| Msa1460940 | AT5G37000.1 | 51.683 | 416 | 170 | 2 | 699 | 1084 | 134 | 548 | 3.08e-143 | 442 |
| Msa1460940 | AT5G11610.1 | 59.398 | 399 | 152 | 6 | 201 | 593 | 138 | 532 | 6.12e-161 | 488 |
| Msa1460940 | AT5G11610.1 | 55.062 | 405 | 152 | 5 | 713 | 1087 | 141 | 545 | 5.57e-155 | 472 |
| Msa1460940 | AT4G16745.2 | 56.499 | 377 | 158 | 4 | 222 | 592 | 141 | 517 | 3.47e-142 | 440 |
| Msa1460940 | AT4G16745.2 | 53.521 | 355 | 130 | 4 | 753 | 1072 | 162 | 516 | 9.95e-122 | 386 |
| Msa1460940 | AT4G16745.1 | 55.820 | 378 | 161 | 4 | 222 | 593 | 141 | 518 | 6.40e-141 | 435 |
| Msa1460940 | AT4G16745.1 | 54.768 | 367 | 131 | 4 | 753 | 1084 | 162 | 528 | 7.70e-133 | 414 |
| Msa1460940 | AT5G11610.2 | 56.270 | 311 | 127 | 5 | 201 | 506 | 138 | 444 | 2.21e-112 | 357 |
| Msa1460940 | AT5G11610.2 | 56.537 | 283 | 119 | 3 | 713 | 991 | 141 | 423 | 1.35e-108 | 347 |
| Msa1460940 | AT5G03795.1 | 46.584 | 322 | 165 | 3 | 261 | 579 | 170 | 487 | 8.25e-94 | 309 |
| Msa1460940 | AT5G03795.1 | 41.108 | 343 | 172 | 3 | 771 | 1084 | 170 | 511 | 1.04e-84 | 284 |
| Msa1460940 | AT5G25310.1 | 42.049 | 371 | 196 | 7 | 236 | 593 | 101 | 465 | 2.77e-86 | 287 |
| Msa1460940 | AT5G25310.1 | 35.116 | 430 | 236 | 7 | 692 | 1084 | 52 | 475 | 9.84e-75 | 256 |
| Msa1460940 | AT5G20260.2 | 41.457 | 357 | 194 | 6 | 236 | 580 | 85 | 438 | 1.36e-81 | 274 |
| Msa1460940 | AT5G20260.2 | 37.318 | 343 | 184 | 4 | 773 | 1084 | 119 | 461 | 4.34e-65 | 228 |
| Msa1460940 | AT3G07620.1 | 42.012 | 338 | 188 | 4 | 260 | 593 | 111 | 444 | 2.34e-80 | 270 |
| Msa1460940 | AT3G07620.1 | 37.302 | 378 | 201 | 6 | 741 | 1084 | 79 | 454 | 1.70e-73 | 251 |
| Msa1460940 | AT5G20260.3 | 44.268 | 314 | 167 | 4 | 272 | 580 | 23 | 333 | 1.26e-79 | 265 |
| Msa1460940 | AT5G20260.3 | 36.441 | 354 | 192 | 5 | 762 | 1084 | 5 | 356 | 3.90e-63 | 219 |
| Msa1460940 | AT5G20260.1 | 44.337 | 309 | 164 | 4 | 277 | 580 | 1 | 306 | 3.04e-79 | 263 |
| Msa1460940 | AT5G20260.1 | 37.386 | 329 | 175 | 4 | 787 | 1084 | 1 | 329 | 2.29e-62 | 216 |
| Msa1460940 | AT5G11130.1 | 35.520 | 442 | 249 | 10 | 149 | 580 | 34 | 449 | 2.44e-78 | 266 |
| Msa1460940 | AT5G11130.1 | 37.752 | 347 | 176 | 6 | 773 | 1084 | 131 | 472 | 2.81e-70 | 243 |
| Msa1460940 | AT5G11130.2 | 42.173 | 313 | 164 | 6 | 277 | 580 | 1 | 305 | 2.23e-76 | 255 |
| Msa1460940 | AT5G11130.2 | 38.138 | 333 | 166 | 6 | 787 | 1084 | 1 | 328 | 1.71e-68 | 233 |
| Msa1460940 | AT5G33290.1 | 40.533 | 338 | 185 | 5 | 258 | 583 | 141 | 474 | 3.14e-74 | 255 |
| Msa1460940 | AT5G33290.1 | 36.798 | 356 | 178 | 7 | 771 | 1084 | 144 | 494 | 1.24e-66 | 233 |
| Msa1460940 | AT3G42180.1 | 40.000 | 330 | 182 | 6 | 263 | 580 | 116 | 441 | 4.00e-72 | 248 |
| Msa1460940 | AT3G42180.1 | 35.593 | 354 | 181 | 8 | 773 | 1084 | 116 | 464 | 3.88e-61 | 217 |
| Msa1460940 | AT3G42180.4 | 40.823 | 316 | 171 | 6 | 277 | 580 | 1 | 312 | 1.04e-71 | 242 |
| Msa1460940 | AT3G42180.4 | 35.588 | 340 | 172 | 8 | 787 | 1084 | 1 | 335 | 7.75e-59 | 206 |
| Msa1460940 | AT5G11610.3 | 54.688 | 192 | 84 | 2 | 713 | 901 | 141 | 332 | 2.11e-67 | 231 |
| Msa1460940 | AT5G11610.3 | 55.959 | 193 | 81 | 3 | 201 | 389 | 138 | 330 | 8.90e-65 | 223 |
| Msa1460940 | AT4G38040.1 | 35.882 | 340 | 201 | 7 | 260 | 593 | 83 | 411 | 3.02e-62 | 219 |
| Msa1460940 | AT4G38040.1 | 34.085 | 355 | 188 | 10 | 760 | 1080 | 75 | 417 | 1.63e-54 | 196 |
| Msa1460940 | AT4G38040.2 | 35.185 | 324 | 193 | 7 | 260 | 577 | 83 | 395 | 2.76e-56 | 201 |
| Msa1460940 | AT4G38040.2 | 32.733 | 333 | 178 | 10 | 760 | 1058 | 75 | 395 | 6.39e-44 | 165 |
| Msa1460940 | AT5G61840.1 | 29.487 | 312 | 189 | 11 | 281 | 569 | 49 | 352 | 5.73e-25 | 109 |
| Msa1460940 | AT1G27440.1 | 29.299 | 314 | 187 | 11 | 281 | 569 | 46 | 349 | 1.45e-24 | 108 |
| Msa1460940 | AT1G67410.1 | 27.778 | 306 | 189 | 9 | 303 | 585 | 97 | 393 | 4.39e-22 | 100 |
| Msa1460940 | AT3G45400.1 | 26.667 | 270 | 182 | 6 | 323 | 582 | 157 | 420 | 2.25e-17 | 87.0 |
| Msa1460940 | AT3G45400.1 | 22.569 | 288 | 168 | 8 | 836 | 1079 | 160 | 436 | 1.38e-11 | 68.6 |
| Msa1460940 | AT3G03650.1 | 26.103 | 272 | 185 | 6 | 318 | 579 | 191 | 456 | 2.55e-17 | 87.0 |
| Msa1460940 | AT5G22940.1 | 27.068 | 266 | 151 | 10 | 321 | 557 | 153 | 404 | 7.50e-17 | 85.5 |
| Msa1460940 | AT5G22940.2 | 27.068 | 266 | 151 | 10 | 321 | 557 | 182 | 433 | 9.27e-17 | 85.1 |
| Msa1460940 | AT2G35100.1 | 27.798 | 277 | 164 | 9 | 323 | 579 | 130 | 390 | 2.65e-16 | 83.6 |
| Msa1460940 | AT5G44930.2 | 27.839 | 273 | 166 | 11 | 323 | 579 | 129 | 386 | 2.84e-14 | 77.0 |
| Msa1460940 | AT5G44930.1 | 27.839 | 273 | 166 | 11 | 323 | 579 | 129 | 386 | 2.84e-14 | 77.0 |
| Msa1460940 | AT5G44930.3 | 28.936 | 235 | 141 | 9 | 323 | 545 | 129 | 349 | 9.01e-14 | 75.1 |
| Msa1460940 | AT1G74680.1 | 25.763 | 295 | 194 | 8 | 300 | 579 | 129 | 413 | 1.04e-13 | 75.5 |
| Msa1460940 | AT1G21480.2 | 25.249 | 301 | 167 | 14 | 280 | 543 | 88 | 367 | 7.63e-12 | 69.3 |
| Msa1460940 | AT3G57630.2 | 25.298 | 336 | 196 | 10 | 302 | 584 | 388 | 721 | 8.20e-12 | 70.1 |
| Msa1460940 | AT3G57630.3 | 25.298 | 336 | 196 | 10 | 302 | 584 | 390 | 723 | 8.64e-12 | 70.1 |
| Msa1460940 | AT3G57630.1 | 25.298 | 336 | 196 | 10 | 302 | 584 | 390 | 723 | 8.64e-12 | 70.1 |
| Msa1460940 | AT5G16890.1 | 28.384 | 229 | 147 | 7 | 372 | 587 | 230 | 454 | 9.71e-12 | 69.3 |
| Msa1460940 | AT1G21480.1 | 24.706 | 340 | 197 | 15 | 280 | 581 | 88 | 406 | 1.13e-11 | 68.9 |
Find 215 sgRNAs with CRISPR-Local
Find 440 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAGAAATTGTTATGCATTAT+TGG | 0.130270 | tig0041156:+2205 | Msa1460940:CDS |
| TTGCCAGGAAACATTCTTTC+TGG | 0.156429 | tig0041156:+4042 | Msa1460940:CDS |
| TTGCTGGAAAGTACCCTTTC+TGG | 0.178781 | tig0041156:+7809 | Msa1460940:CDS |
| ACAAGTATACTCTTCAAATT+TGG | 0.181677 | tig0041156:-5068 | Msa1460940:intergenic |
| ACATGCTTCTTCATTCAATT+TGG | 0.207686 | tig0041156:+8812 | Msa1460940:CDS |
| GTTCGGTAATTCTAGCAAAA+TGG | 0.228394 | tig0041156:+2147 | Msa1460940:exon |
| AGATATGGTGAGTGCATTAT+TGG | 0.243789 | tig0041156:-3822 | Msa1460940:intergenic |
| GTATCCAAAGGATGGAATTT+TGG | 0.248671 | tig0041156:+6975 | Msa1460940:CDS |
| ACTATTTCAAGAACTGTTAT+AGG | 0.255962 | tig0041156:+2460 | Msa1460940:CDS |
| CTTTCTATCTAGCTGAAATA+AGG | 0.260693 | tig0041156:-2185 | Msa1460940:intergenic |
| CCCTAACACGAAACCTTCTT+TGG | 0.261843 | tig0041156:-4643 | Msa1460940:intergenic |
| TGAGATGAACTTAATGTTAC+AGG | 0.271164 | tig0041156:+7095 | Msa1460940:CDS |
| AATGCACTCACCATATCTTT+TGG | 0.271717 | tig0041156:+3827 | Msa1460940:CDS |
| TTCTTGTTGCTTGCCATGAT+TGG | 0.285262 | tig0041156:+4090 | Msa1460940:CDS |
| GCATTGCGGACGTAAGTTTC+AGG | 0.292210 | tig0041156:-4681 | Msa1460940:intergenic |
| GCTTCCAAAATTCCATCCTT+TGG | 0.316738 | tig0041156:-6979 | Msa1460940:intergenic |
| AATCTTTCATGAGCCATTAC+TGG | 0.318835 | tig0041156:+7591 | Msa1460940:CDS |
| AGGATGGTTTATGAAATTAA+TGG | 0.325831 | tig0041156:+7633 | Msa1460940:CDS |
| GCCTATGCTGTTGAAGTTAT+GGG | 0.334086 | tig0041156:+8415 | Msa1460940:CDS |
| GCCAAAGAAGGTTTCGTGTT+AGG | 0.334936 | tig0041156:+4642 | Msa1460940:CDS |
| CCCGTCACCACCCAGTTTAA+CGG | 0.336617 | tig0041156:-1879 | Msa1460940:intergenic |
| TCCCAGTGCTGCAGCAGAAT+TGG | 0.342443 | tig0041156:-4795 | Msa1460940:intergenic |
| GAAATGTCTCCTTGTTTAGA+AGG | 0.342954 | tig0041156:+7344 | Msa1460940:CDS |
| AGAGAGGAAAACCGTTAAAC+TGG | 0.343091 | tig0041156:+1868 | Msa1460940:five_prime_UTR |
| TAATGAAACTAGGGTGTATC+AGG | 0.349108 | tig0041156:+2429 | Msa1460940:CDS |
| CCATGCTTCGTATCGATCTA+TGG | 0.350992 | tig0041156:+2828 | Msa1460940:CDS |
| TCGAGCCTTCGAGAACTAAA+AGG | 0.353194 | tig0041156:-3945 | Msa1460940:intergenic |
| AGTTATTCAGATACTGCATT+AGG | 0.356535 | tig0041156:-4007 | Msa1460940:intergenic |
| GGCCTATGCTGTTGAAGTTA+TGG | 0.358693 | tig0041156:+8414 | Msa1460940:CDS |
| CATAAGGTAGGTCAAAATAT+TGG | 0.361514 | tig0041156:-2255 | Msa1460940:intergenic |
| AAGGAGACATTTCTGTATAA+AGG | 0.362991 | tig0041156:-7334 | Msa1460940:intergenic |
| CTTGAACCTCTCATCATTCA+TGG | 0.363012 | tig0041156:-2671 | Msa1460940:intergenic |
| TTGTCGTTGCCTGCCATGAT+TGG | 0.365407 | tig0041156:+7857 | Msa1460940:CDS |
| GTCCAATTCTGCTGCAGCAC+TGG | 0.365560 | tig0041156:+4793 | Msa1460940:CDS |
| TGAAACAAATCATACTTAAC+AGG | 0.366036 | tig0041156:-8790 | Msa1460940:intergenic |
| AAATATGTTGGTGCAATTGC+AGG | 0.369295 | tig0041156:-2538 | Msa1460940:intergenic |
| AAATCATAATAGTAATAGTT+TGG | 0.371376 | tig0041156:-1715 | Msa1460940:intergenic |
| GATGCAGAAGAGGGTGAAAA+AGG | 0.372286 | tig0041156:+8738 | Msa1460940:CDS |
| AAAGAACTTGAAACTGTTGT+TGG | 0.379151 | tig0041156:+6853 | Msa1460940:CDS |
| CCAAAGAAGGTTTCGTGTTA+GGG | 0.380908 | tig0041156:+4643 | Msa1460940:CDS |
| ATGTGTTCCGGTTATTATAT+CGG | 0.384281 | tig0041156:+4971 | Msa1460940:CDS |
| ACAATGTTTCCATGTTTAAG+AGG | 0.385952 | tig0041156:+3047 | Msa1460940:CDS |
| GACGGGATCACAGGGGAGTT+TGG | 0.391336 | tig0041156:+1896 | Msa1460940:five_prime_UTR |
| TTCGGTAATTCTAGCAAAAT+GGG | 0.391794 | tig0041156:+2148 | Msa1460940:exon |
| AAGTTGTAGCGAAGCAAAAC+AGG | 0.399508 | tig0041156:-1952 | Msa1460940:intergenic |
| TATTAGGAGCTATGAATTGA+TGG | 0.401389 | tig0041156:+3758 | Msa1460940:intron |
| ATTCCAGAAAGAATGTTTCC+TGG | 0.402130 | tig0041156:-4045 | Msa1460940:intergenic |
| GATAACATCAATATCAGATA+TGG | 0.403523 | tig0041156:+2786 | Msa1460940:CDS |
| AACTAAAAGGTAAGTAAAAC+AGG | 0.406328 | tig0041156:-3932 | Msa1460940:intergenic |
| CTCCTGTCTCCCTTCGACTT+TGG | 0.408538 | tig0041156:-4855 | Msa1460940:intergenic |
| CTTTGGCATCGGCATTGCAC+AGG | 0.408694 | tig0041156:-4626 | Msa1460940:intergenic |
| TTCAAGAACTGTTATAGGTA+TGG | 0.410809 | tig0041156:+2465 | Msa1460940:CDS |
| CCTTTCTGGAATAGAACTAA+TGG | 0.412966 | tig0041156:+7823 | Msa1460940:CDS |
| TTCACATGTTAATGTTTGTT+CGG | 0.416225 | tig0041156:+2130 | Msa1460940:five_prime_UTR |
| TTGCAGGAGTTACGAACTAA+TGG | 0.421471 | tig0041156:+7525 | Msa1460940:intron |
| CTTGCTTGCACCACAGCCTA+TGG | 0.423392 | tig0041156:+6915 | Msa1460940:CDS |
| CTGTTTACTTCATATCCCTT+TGG | 0.423620 | tig0041156:-4918 | Msa1460940:intergenic |
| AATTTCAGAGTCCTTTGATA+AGG | 0.425176 | tig0041156:-2641 | Msa1460940:intergenic |
| TCTGATATTGATGTTATCTC+TGG | 0.425688 | tig0041156:-2781 | Msa1460940:intergenic |
| AATCATGTTGACATGATTGC+TGG | 0.428416 | tig0041156:+7793 | Msa1460940:CDS |
| AAATTATCAGATATGATAAC+AGG | 0.429124 | tig0041156:-8598 | Msa1460940:intergenic |
| GATATCGTAACCACTTTCAA+TGG | 0.431342 | tig0041156:-7072 | Msa1460940:intergenic |
| ATGCGCCCTCTTGTTTCTGC+AGG | 0.435758 | tig0041156:-8206 | Msa1460940:intergenic |
| ATTCAAATTCACATAGTCAT+AGG | 0.436947 | tig0041156:+3982 | Msa1460940:CDS |
| CTGGGTGGTGACGGGATCAC+AGG | 0.437698 | tig0041156:+1887 | Msa1460940:five_prime_UTR |
| CATTCTTTCTGGAATAGAAC+AGG | 0.438384 | tig0041156:+4053 | Msa1460940:CDS |
| CCAATTGCTATATTTCGTAA+TGG | 0.441182 | tig0041156:-6784 | Msa1460940:intergenic |
| TACCTGGTACTAAGTAGTTC+CGG | 0.441893 | tig0041156:-1997 | Msa1460940:intergenic |
| TCTTGTTGCTTGCCATGATT+GGG | 0.443147 | tig0041156:+4091 | Msa1460940:CDS |
| GCATATATTCCCAAAAGATA+TGG | 0.445356 | tig0041156:-3837 | Msa1460940:intergenic |
| TTGACTTCGACGCTCCTATC+CGG | 0.449907 | tig0041156:+1978 | Msa1460940:five_prime_UTR |
| GTGGTTTGCACGGTTACGTT+CGG | 0.450034 | tig0041156:+8393 | Msa1460940:CDS |
| TCATGCTTCTTCTCAGCTAC+TGG | 0.450640 | tig0041156:+7122 | Msa1460940:CDS |
| ATGATAGCCTCGACAACTCT+TGG | 0.455452 | tig0041156:-4942 | Msa1460940:intergenic |
| AAATTGTCCGATATAATAAC+CGG | 0.456434 | tig0041156:-4978 | Msa1460940:intergenic |
| AGATATACTACTTTCTATAT+CGG | 0.457637 | tig0041156:+8699 | Msa1460940:CDS |
| AAGTATTGTGTTTGTCCAAA+GGG | 0.462941 | tig0041156:+4903 | Msa1460940:CDS |
| CCATTACGAAATATAGCAAT+TGG | 0.462987 | tig0041156:+6784 | Msa1460940:CDS |
| AGTAATGGCTCATGAAAGAT+TGG | 0.467395 | tig0041156:-7589 | Msa1460940:intergenic |
| GCTAATTACAATGCAACAAA+AGG | 0.468767 | tig0041156:+7009 | Msa1460940:CDS |
| TAAAACAAGTGAGCCTTCTC+AGG | 0.468856 | tig0041156:-7685 | Msa1460940:intergenic |
| CCGTTAAACTGGGTGGTGAC+GGG | 0.469909 | tig0041156:+1879 | Msa1460940:five_prime_UTR |
| TGCAATGCTGACATTGAAGT+AGG | 0.473832 | tig0041156:+8251 | Msa1460940:CDS |
| TCCAATTCTGCTGCAGCACT+GGG | 0.474071 | tig0041156:+4794 | Msa1460940:CDS |
| AAGTCTTGAATCATTCATAA+TGG | 0.476884 | tig0041156:-7305 | Msa1460940:intergenic |
| TTTGTTGGAGGAGTCGTAGT+AGG | 0.478425 | tig0041156:-2571 | Msa1460940:intergenic |
| TCAGTCAACTATTTCAAGAA+AGG | 0.478581 | tig0041156:-1764 | Msa1460940:intergenic |
| CATTAGTTCTATTCCAGAAA+GGG | 0.480682 | tig0041156:-7822 | Msa1460940:intergenic |
| GGAGGAGTCGTAGTAGGTGG+TGG | 0.482493 | tig0041156:-2565 | Msa1460940:intergenic |
| TTGGAATTCTTCGAAATCGT+GGG | 0.483498 | tig0041156:-7042 | Msa1460940:intergenic |
| TGAATTTGTTTGATTCAAGA+AGG | 0.484049 | tig0041156:-2386 | Msa1460940:intergenic |
| ATCCGCTGCTTTGTTTCTGA+AGG | 0.485576 | tig0041156:-4585 | Msa1460940:intergenic |
| ATACTACTACTGCTACTACT+AGG | 0.488403 | tig0041156:-2310 | Msa1460940:intergenic |
| CACGAAACCTTCTTTGGCAT+CGG | 0.488915 | tig0041156:-4637 | Msa1460940:intergenic |
| CCATTAGTTCTATTCCAGAA+AGG | 0.489751 | tig0041156:-7823 | Msa1460940:intergenic |
| GAACCTGACATGAAAATATC+CGG | 0.492022 | tig0041156:+8446 | Msa1460940:CDS |
| TGTCGTTGCCTGCCATGATT+GGG | 0.496163 | tig0041156:+7858 | Msa1460940:CDS |
| TATCATCTACGAATGTGTTC+CGG | 0.497702 | tig0041156:+4959 | Msa1460940:CDS |
| GATCCCGACATGAAAATCTT+CGG | 0.498201 | tig0041156:+4825 | Msa1460940:CDS |
| ATTGAAGTAGGATTCAAGAT+AGG | 0.499492 | tig0041156:+8263 | Msa1460940:CDS |
| TTGGTGCAATTGCAGGAGAA+AGG | 0.500094 | tig0041156:-2531 | Msa1460940:intergenic |
| ACCGTTAAACTGGGTGGTGA+CGG | 0.501873 | tig0041156:+1878 | Msa1460940:five_prime_UTR |
| GGGATGGTTCATGAGGTTGA+TGG | 0.503275 | tig0041156:+3866 | Msa1460940:CDS |
| TGCCAAAGTCGAAGGGAGAC+AGG | 0.505775 | tig0041156:+4853 | Msa1460940:CDS |
| CTCTCTCTTGACGAGGACTT+AGG | 0.511856 | tig0041156:-1845 | Msa1460940:intergenic |
| AAAGCGGTGCTGTTGATGTT+CGG | 0.512776 | tig0041156:-1926 | Msa1460940:intergenic |
| CCGTTGGACAATGGCACCAT+AGG | 0.513558 | tig0041156:-6931 | Msa1460940:intergenic |
| AGAGAACTTGTAGTCACCTT+AGG | 0.515465 | tig0041156:-2748 | Msa1460940:intergenic |
| TGCAATGCCGATGCCAAAGA+AGG | 0.516481 | tig0041156:+4630 | Msa1460940:CDS |
| CATAGGCTGTGGTGCAAGCA+AGG | 0.518096 | tig0041156:-6914 | Msa1460940:intergenic |
| CGGTATGCTGCCAAAGTCGA+AGG | 0.519063 | tig0041156:+4845 | Msa1460940:CDS |
| TTTGGAATTCTTCGAAATCG+TGG | 0.519198 | tig0041156:-7043 | Msa1460940:intergenic |
| TTTGACATGCGGCAACGGAC+CGG | 0.520389 | tig0041156:-8465 | Msa1460940:intergenic |
| TATATCGGAAGAGAAATACT+TGG | 0.523659 | tig0041156:+8714 | Msa1460940:CDS |
| TTGACAAAGTTAATGAAACT+AGG | 0.524328 | tig0041156:+2419 | Msa1460940:CDS |
| TTCTATCGTAACTGTGCCTA+AGG | 0.524738 | tig0041156:+2732 | Msa1460940:CDS |
| TGAAATATATCATACTTGAC+AGG | 0.528197 | tig0041156:-5170 | Msa1460940:intergenic |
| AAAATCCCACCAGAGACCTC+GGG | 0.528554 | tig0041156:+4706 | Msa1460940:CDS |
| CAAGTATTGTGTTTGTCCAA+AGG | 0.529308 | tig0041156:+4902 | Msa1460940:CDS |
| TGACAAAGTTAATGAAACTA+GGG | 0.529960 | tig0041156:+2420 | Msa1460940:CDS |
| GGTACTAGAATGTTACCATA+AGG | 0.530086 | tig0041156:-2271 | Msa1460940:intergenic |
| CAAAATCCCACCAGAGACCT+CGG | 0.534597 | tig0041156:+4705 | Msa1460940:CDS |
| GCACCAGCTGTAACTGATGT+TGG | 0.535323 | tig0041156:+3001 | Msa1460940:CDS |
| TGGTGCAATTGCAGGAGAAA+GGG | 0.536210 | tig0041156:-2530 | Msa1460940:intergenic |
| TGGGTGGTGACGGGATCACA+GGG | 0.536718 | tig0041156:+1888 | Msa1460940:five_prime_UTR |
| CAATCATACACACCCAATCA+TGG | 0.540398 | tig0041156:-7870 | Msa1460940:intergenic |
| GATAGGAGCGTCGAAGTCAA+AGG | 0.543430 | tig0041156:-1975 | Msa1460940:intergenic |
| TGTCACGAAAGATGCAAAGA+AGG | 0.544340 | tig0041156:+3905 | Msa1460940:CDS |
| ACTATGTAGACACGATTGCC+AGG | 0.544464 | tig0041156:+4027 | Msa1460940:CDS |
| GTTTCATTAACTTTGTCAAG+AGG | 0.544763 | tig0041156:-2415 | Msa1460940:intergenic |
| GAGGCAGATGGTGAATCTGC+AGG | 0.549099 | tig0041156:-2340 | Msa1460940:intergenic |
| GTTGGAGGAGTCGTAGTAGG+TGG | 0.551151 | tig0041156:-2568 | Msa1460940:intergenic |
| CTAGGATATGAATATGATGT+AGG | 0.551756 | tig0041156:-2292 | Msa1460940:intergenic |
| TGTAACTTGATCTAATGAAG+AGG | 0.552542 | tig0041156:-6815 | Msa1460940:intergenic |
| TAACTTGTGTTTAGAGGCCA+AGG | 0.552851 | tig0041156:+2924 | Msa1460940:intron |
| AGGATAGGCCTCTGAGATGG+AGG | 0.552992 | tig0041156:-8356 | Msa1460940:intergenic |
| TTATAGGTATGGATTTGTCA+AGG | 0.554759 | tig0041156:+2476 | Msa1460940:CDS |
| TGAATCAAAGAATGTTCCGT+TGG | 0.556899 | tig0041156:-6947 | Msa1460940:intergenic |
| CTAAATATTTCAGAGGCAGA+TGG | 0.559848 | tig0041156:-2352 | Msa1460940:intergenic |
| TTTCCAACATCAGTTACAGC+TGG | 0.565642 | tig0041156:-3004 | Msa1460940:intergenic |
| GGAAATAATGAAAGCGAAGT+CGG | 0.566698 | tig0041156:+7264 | Msa1460940:CDS |
| AAAGTGTATGTATACAGAGA+AGG | 0.569010 | tig0041156:+3792 | Msa1460940:CDS |
| TTTGGGAATATATGCTTCCG+AGG | 0.569999 | tig0041156:+3845 | Msa1460940:CDS |
| TTTGGCATCGGCATTGCACA+GGG | 0.570167 | tig0041156:-4625 | Msa1460940:intergenic |
| GAATATATGCTTCCGAGGGA+TGG | 0.570587 | tig0041156:+3850 | Msa1460940:CDS |
| GGTCCGTTGCCGCATGTCAA+AGG | 0.571024 | tig0041156:+8467 | Msa1460940:CDS |
| TTACCTTTGACATGCGGCAA+CGG | 0.571758 | tig0041156:-8470 | Msa1460940:intergenic |
| TGTTGATCAAGAGCTACTGC+AGG | 0.571864 | tig0041156:+2958 | Msa1460940:CDS |
| AAAGTTTATATCTACGCGGA+TGG | 0.572641 | tig0041156:+7559 | Msa1460940:CDS |
| GAATATATGCATCTGAAGGA+TGG | 0.574640 | tig0041156:+7617 | Msa1460940:CDS |
| AAGTGTATGTATACAGAGAA+GGG | 0.575386 | tig0041156:+3793 | Msa1460940:CDS |
| ATCATTTGCTGTGTTTATCG+AGG | 0.581032 | tig0041156:+8654 | Msa1460940:CDS |
| TTTCATGAGCCATTACTGGA+TGG | 0.581573 | tig0041156:+7595 | Msa1460940:CDS |
| GGTGGTGGAGTTAAATATGT+TGG | 0.587903 | tig0041156:-2550 | Msa1460940:intergenic |
| CAGGCTCCTGCAGAAACAAG+AGG | 0.589588 | tig0041156:+8200 | Msa1460940:intron |
| ATCCGGAACTACTTAGTACC+AGG | 0.590736 | tig0041156:+1995 | Msa1460940:five_prime_UTR |
| GCTAGGATAGGCCTCTGAGA+TGG | 0.591727 | tig0041156:-8359 | Msa1460940:intergenic |
| GCATATATTCCATCCAGTAA+TGG | 0.592220 | tig0041156:-7604 | Msa1460940:intergenic |
| TATAGGTATGGATTTGTCAA+GGG | 0.593146 | tig0041156:+2477 | Msa1460940:CDS |
| AGAAGGTTTCGTGTTAGGGA+AGG | 0.594067 | tig0041156:+4647 | Msa1460940:CDS |
| CAATTCAAAACCTCAAACAA+AGG | 0.598510 | tig0041156:-8628 | Msa1460940:intergenic |
| CTTGAATCATTCATAATGGT+AGG | 0.599228 | tig0041156:-7301 | Msa1460940:intergenic |
| CGGTGCTGTTGATGTTCGGT+CGG | 0.599965 | tig0041156:-1922 | Msa1460940:intergenic |
| CCATAGATCGATACGAAGCA+TGG | 0.600941 | tig0041156:-2828 | Msa1460940:intergenic |
| AATACTTGGAGATGCAGAAG+AGG | 0.601267 | tig0041156:+8728 | Msa1460940:CDS |
| ATTGTTACTAAATATTTCAG+AGG | 0.604096 | tig0041156:-2359 | Msa1460940:intergenic |
| GAATGCTAAAATAAGTGCAA+AGG | 0.604187 | tig0041156:-2233 | Msa1460940:intergenic |
| TGCAACAATCTTGAACTGAA+AGG | 0.604634 | tig0041156:-7712 | Msa1460940:intergenic |
| AAGAATGTTCCGTTGGACAA+TGG | 0.607241 | tig0041156:-6940 | Msa1460940:intergenic |
| GGTACTAAGTAGTTCCGGAT+AGG | 0.608134 | tig0041156:-1992 | Msa1460940:intergenic |
| TGATCTAATGAAGAGGCTTG+AGG | 0.611504 | tig0041156:-6808 | Msa1460940:intergenic |
| GATGTAAATTTAACATCACA+AGG | 0.611554 | tig0041156:+6880 | Msa1460940:CDS |
| TTGGGAATATATGCTTCCGA+GGG | 0.611986 | tig0041156:+3846 | Msa1460940:CDS |
| AGGCTCCTGCAGAAACAAGA+GGG | 0.613269 | tig0041156:+8201 | Msa1460940:intron |
| CTTCCGAGGGATGGTTCATG+AGG | 0.614198 | tig0041156:+3859 | Msa1460940:CDS |
| CTGATTCCATGAATGATGAG+AGG | 0.615025 | tig0041156:+2665 | Msa1460940:CDS |
| TCCAACAAAAGCCTTATCAA+AGG | 0.617266 | tig0041156:+2630 | Msa1460940:CDS |
| TGGTTTATGAAATTAATGGA+AGG | 0.619306 | tig0041156:+7637 | Msa1460940:CDS |
| CATACACACCCAATCATGGC+AGG | 0.619634 | tig0041156:-7866 | Msa1460940:intergenic |
| CTAGAATGTTACCATAAGGT+AGG | 0.624119 | tig0041156:-2267 | Msa1460940:intergenic |
| TACCACTGAAGATCCTGAGA+AGG | 0.624963 | tig0041156:+7672 | Msa1460940:CDS |
| GAGAGGAAAACCGTTAAACT+GGG | 0.625968 | tig0041156:+1869 | Msa1460940:five_prime_UTR |
| GAGTTCTTCAGCTGTTAATG+TGG | 0.627481 | tig0041156:+7243 | Msa1460940:CDS |
| TAAAAGGTAAGTAAAACAGG+TGG | 0.627827 | tig0041156:-3929 | Msa1460940:intergenic |
| ATACTTGGAGATGCAGAAGA+GGG | 0.628365 | tig0041156:+8729 | Msa1460940:CDS |
| GACAATGGCACCATAGGCTG+TGG | 0.632056 | tig0041156:-6925 | Msa1460940:intergenic |
| TGATACCTACCTTCTAAACA+AGG | 0.633883 | tig0041156:-7353 | Msa1460940:intergenic |
| GATGGAATATATGCATCTGA+AGG | 0.636209 | tig0041156:+7613 | Msa1460940:CDS |
| TTCAAAACCTCAAACAAAGG+AGG | 0.637644 | tig0041156:-8625 | Msa1460940:intergenic |
| AAACAGTCCAAGAGTTGTCG+AGG | 0.637998 | tig0041156:+4935 | Msa1460940:CDS |
| TTTGCATTACCTTTGACATG+CGG | 0.638411 | tig0041156:-8476 | Msa1460940:intergenic |
| TTAACAGCTGAAGAACTCGC+CGG | 0.640548 | tig0041156:-7238 | Msa1460940:intergenic |
| CAACCTCATGAACCATCCCT+CGG | 0.641247 | tig0041156:-3862 | Msa1460940:intergenic |
| CCTATGGTGCCATTGTCCAA+CGG | 0.644498 | tig0041156:+6931 | Msa1460940:CDS |
| TCAACAGCTGAAGACCACCT+TGG | 0.647646 | tig0041156:-2941 | Msa1460940:intergenic |
| GAAGCAAAACAGGACAAAAG+CGG | 0.649758 | tig0041156:-1942 | Msa1460940:intergenic |
| GGATAGGCCTCTGAGATGGA+GGG | 0.650350 | tig0041156:-8355 | Msa1460940:intergenic |
| GGTATGCTGCCAAAGTCGAA+GGG | 0.651268 | tig0041156:+4846 | Msa1460940:CDS |
| AAAATGATACCTCTTAAACA+TGG | 0.651495 | tig0041156:-3056 | Msa1460940:intergenic |
| CTTGTGTTTAGAGGCCAAGG+TGG | 0.652459 | tig0041156:+2927 | Msa1460940:intron |
| TCAATTGTAGAATTAACCAA+AGG | 0.654066 | tig0041156:-6715 | Msa1460940:intergenic |
| TCCCATAACTTCAACAGCAT+AGG | 0.660350 | tig0041156:-8416 | Msa1460940:intergenic |
| CACCTTCAGAAACAAAGCAG+CGG | 0.660959 | tig0041156:+4583 | Msa1460940:CDS |
| AAAAGGTAAGTAAAACAGGT+GGG | 0.663973 | tig0041156:-3928 | Msa1460940:intergenic |
| AGTGCTGCAGCAGAATTGGA+CGG | 0.667835 | tig0041156:-4791 | Msa1460940:intergenic |
| AAATCCCACCAGAGACCTCG+GGG | 0.668344 | tig0041156:+4707 | Msa1460940:CDS |
| GAGATGAACTTAATGTTACA+GGG | 0.668384 | tig0041156:+7096 | Msa1460940:CDS |
| TCTTTCTGGAATAGAACAGG+AGG | 0.675736 | tig0041156:+4056 | Msa1460940:CDS |
| AGCCTTCTCAGGATCTTCAG+TGG | 0.682128 | tig0041156:-7674 | Msa1460940:intergenic |
| GTGGCAACCCTCCATCTCAG+AGG | 0.689727 | tig0041156:+8348 | Msa1460940:CDS |
| ATGTAAATTTAACATCACAA+GGG | 0.691088 | tig0041156:+6881 | Msa1460940:CDS |
| AGGAAAACCGTTAAACTGGG+TGG | 0.722168 | tig0041156:+1872 | Msa1460940:five_prime_UTR |
| GGGTGGTGACGGGATCACAG+GGG | 0.738108 | tig0041156:+1889 | Msa1460940:five_prime_UTR |
| GCTCAAAGTTTATATCTACG+CGG | 0.770194 | tig0041156:+7555 | Msa1460940:CDS |
| AATCCCACCAGAGACCTCGG+GGG | 0.792669 | tig0041156:+4708 | Msa1460940:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTACATACTTAAAAATATTT+TGG | + | tig0041156:5595-5614 | Msa1460940:intron | 10.0% |
| !!! | TACATACTTAAAAATATTTT+GGG | + | tig0041156:5596-5615 | Msa1460940:intron | 10.0% |
| !! | AAATCATAATAGTAATAGTT+TGG | - | tig0041156:1718-1737 | Msa0141340:intergenic | 15.0% |
| !!! | TTTTATTATTATGGTATTTC+TGG | + | tig0041156:3075-3094 | Msa1460940:intron | 15.0% |
| !!! | ACAGAGATATTTTTTATTTA+TGG | + | tig0041156:3209-3228 | Msa1460940:intron | 15.0% |
| !! | ATTTCACAGAATAAATATAT+TGG | - | tig0041156:4263-4282 | Msa1460940:intergenic | 15.0% |
| !!! | AACTAAATTGATGATTTATT+TGG | + | tig0041156:4493-4512 | Msa1460940:intron | 15.0% |
| !! | AAGAAATTGTTATGCATTAT+TGG | + | tig0041156:2205-2224 | Msa1460940:CDS | 20.0% |
| !! | ATTGTTACTAAATATTTCAG+AGG | - | tig0041156:2362-2381 | Msa1460940:intergenic | 20.0% |
| !!! | TCATTGGATAAAATTTTTGT+TGG | - | tig0041156:2589-2608 | Msa1460940:intergenic | 20.0% |
| !!! | TGTAGAAATTTTAGAATCAT+TGG | - | tig0041156:2605-2624 | Msa1460940:intergenic | 20.0% |
| !!! | GAGGTATCATTTTATTATTA+TGG | + | tig0041156:3066-3085 | Msa1460940:intron | 20.0% |
| !! | AGCATTAAATTGTAAATTGT+TGG | - | tig0041156:3145-3164 | Msa1460940:intergenic | 20.0% |
| !!! | ATAAACTGAAAACAACTTTT+GGG | - | tig0041156:3343-3362 | Msa1460940:intergenic | 20.0% |
| !!! | AATAAACTGAAAACAACTTT+TGG | - | tig0041156:3344-3363 | Msa1460940:intergenic | 20.0% |
| !! | ATATCAGTGTATTTATTGAT+CGG | + | tig0041156:3606-3625 | Msa1460940:intron | 20.0% |
| !!! | ATCACAAATTTTCAATTTCA+AGG | + | tig0041156:4413-4432 | Msa1460940:intron | 20.0% |
| !!! | TCAATTTAGTTTCAAATTGT+AGG | - | tig0041156:4484-4503 | Msa1460940:intergenic | 20.0% |
| !! | TATATTATGCAAAGAAAGAA+GGG | - | tig0041156:4541-4560 | Msa1460940:intergenic | 20.0% |
| !!! | TACGAAGTTCAAAATATTTT+TGG | - | tig0041156:5648-5667 | Msa1460940:intergenic | 20.0% |
| !! | ACAAAAAAAGGAGATAAATT+GGG | + | tig0041156:5708-5727 | Msa1460940:intron | 20.0% |
| !!! | AGTTTATTAAACCATTTTAC+TGG | + | tig0041156:5929-5948 | Msa1460940:intron | 20.0% |
| !! | GAAGAAAAAAACTTACTATT+TGG | - | tig0041156:6658-6677 | Msa1460940:intergenic | 20.0% |
| !! | ATGTAAATTTAACATCACAA+GGG | + | tig0041156:6881-6900 | Msa1460940:CDS | 20.0% |
| !!! | TTTTAATGTTTTGTAGAAAC+CGG | + | tig0041156:7219-7238 | Msa1460940:intron | 20.0% |
| !! | ATAAGATTCAATTAGAATCT+TGG | - | tig0041156:7454-7473 | Msa1460940:intergenic | 20.0% |
| !! | TTCAATCATAAATAATGGTT+AGG | - | tig0041156:8121-8140 | Msa1460940:intergenic | 20.0% |
| !! | AATGGTTCAATCATAAATAA+TGG | - | tig0041156:8126-8145 | Msa1460940:intergenic | 20.0% |
| !! | AAATTATCAGATATGATAAC+AGG | - | tig0041156:8601-8620 | Msa1460940:intergenic | 20.0% |
| !! | AGATATACTACTTTCTATAT+CGG | + | tig0041156:8699-8718 | Msa1460940:CDS | 20.0% |
| ! | GATATGATAGAAATAGAAAG+TGG | - | tig0041156:2058-2077 | Msa1460940:intergenic | 25.0% |
| ! | TTCACATGTTAATGTTTGTT+CGG | + | tig0041156:2130-2149 | Msa1460940:five_prime_UTR | 25.0% |
| !! | TGAATTTGTTTGATTCAAGA+AGG | - | tig0041156:2389-2408 | Msa1460940:intergenic | 25.0% |
| ! | TTGACAAAGTTAATGAAACT+AGG | + | tig0041156:2419-2438 | Msa1460940:CDS | 25.0% |
| ! | TGACAAAGTTAATGAAACTA+GGG | + | tig0041156:2420-2439 | Msa1460940:CDS | 25.0% |
| ! | ACTATTTCAAGAACTGTTAT+AGG | + | tig0041156:2460-2479 | Msa1460940:CDS | 25.0% |
| !! | TTGGATAAAATTTTTGTTGG+AGG | - | tig0041156:2586-2605 | Msa1460940:intergenic | 25.0% |
| ! | GATAACATCAATATCAGATA+TGG | + | tig0041156:2786-2805 | Msa1460940:CDS | 25.0% |
| ! | AAAATGATACCTCTTAAACA+TGG | - | tig0041156:3059-3078 | Msa1460940:intergenic | 25.0% |
| !! | ATTGTGAACTACATTTTGTT+TGG | + | tig0041156:3184-3203 | Msa1460940:intron | 25.0% |
| ! | TTATGGTTTAGATGATAAAC+AGG | + | tig0041156:3226-3245 | Msa1460940:intron | 25.0% |
| !!! | TATAGAAGTACTTTATGCAT+AGG | + | tig0041156:3517-3536 | Msa1460940:intron | 25.0% |
| ! | TATTAAGCTGTTTATCCAAA+AGG | + | tig0041156:3574-3593 | Msa1460940:intron | 25.0% |
| ! | ATTAAGCTGTTTATCCAAAA+GGG | + | tig0041156:3575-3594 | Msa1460940:intron | 25.0% |
| !!! | TGATGTCTTTCTCTTTTTTT+TGG | + | tig0041156:3663-3682 | Msa1460940:intron | 25.0% |
| ! | AATTCATAGCTCCTAATAAT+TGG | - | tig0041156:3756-3775 | Msa1460940:intergenic | 25.0% |
| ! | AACTAAAAGGTAAGTAAAAC+AGG | - | tig0041156:3935-3954 | Msa1460940:intergenic | 25.0% |
| ! | ATTCAAATTCACATAGTCAT+AGG | + | tig0041156:3982-4001 | Msa1460940:CDS | 25.0% |
| !!! | GAAAATTTGTGATCACTTTT+GGG | - | tig0041156:4406-4425 | Msa1460940:intergenic | 25.0% |
| !! | TGAAAATTTGTGATCACTTT+TGG | - | tig0041156:4407-4426 | Msa1460940:intergenic | 25.0% |
| ! | GTATATTATGCAAAGAAAGA+AGG | - | tig0041156:4542-4561 | Msa1460940:intergenic | 25.0% |
| ! | TTCTTTGCATAATATACCTT+TGG | + | tig0041156:4545-4564 | Msa1460940:intron | 25.0% |
| ! | AAATTGTCCGATATAATAAC+CGG | - | tig0041156:4981-5000 | Msa1460940:intergenic | 25.0% |
| !!! | TTTTTTCGAGGTTTTGAATT+GGG | + | tig0041156:5010-5029 | Msa1460940:CDS | 25.0% |
| ! | ACAAGTATACTCTTCAAATT+TGG | - | tig0041156:5071-5090 | Msa1460940:intergenic | 25.0% |
| !!! | TTTGAAGATACCTCTTTTTT+GGG | - | tig0041156:5100-5119 | Msa1460940:intergenic | 25.0% |
| !!! | ATTTGAAGATACCTCTTTTT+TGG | - | tig0041156:5101-5120 | Msa1460940:intergenic | 25.0% |
| ! | TGAAATATATCATACTTGAC+AGG | - | tig0041156:5173-5192 | Msa1460940:intergenic | 25.0% |
| ! | GACATTGTAAATCAATATCT+AGG | - | tig0041156:5364-5383 | Msa1460940:intergenic | 25.0% |
| ! | AATGTCATATAACATAGTCA+TGG | + | tig0041156:5518-5537 | Msa1460940:intron | 25.0% |
| !!! | TTGGGAATATTTTTAAACCT+TGG | + | tig0041156:5614-5633 | Msa1460940:intron | 25.0% |
| !!! | TGGGAATATTTTTAAACCTT+GGG | + | tig0041156:5615-5634 | Msa1460940:intron | 25.0% |
| ! | CAACTTAAAAATGTACAACA+AGG | + | tig0041156:5683-5702 | Msa1460940:intron | 25.0% |
| ! | GACAAAAAAAGGAGATAAAT+TGG | + | tig0041156:5707-5726 | Msa1460940:intron | 25.0% |
| ! | TTCTTATTGGTCAAAAACAA+TGG | - | tig0041156:5845-5864 | Msa1460940:intergenic | 25.0% |
| !!! | TTGTTTTTCTCACTTCTTAT+TGG | - | tig0041156:5858-5877 | Msa1460940:intergenic | 25.0% |
| ! | AATAAGAAGTGAGAAAAACA+AGG | + | tig0041156:5857-5876 | Msa1460940:intron | 25.0% |
| ! | ATCATGAAATGGTTCATATT+TGG | - | tig0041156:6442-6461 | Msa1460940:intergenic | 25.0% |
| ! | AAATATGAACCATTTCATGA+TGG | + | tig0041156:6441-6460 | Msa1460940:intron | 25.0% |
| ! | AATATGAACCATTTCATGAT+GGG | + | tig0041156:6442-6461 | Msa1460940:intron | 25.0% |
| ! | GAAAATGAATCAAGGTTTAA+TGG | - | tig0041156:6483-6502 | Msa1460940:intergenic | 25.0% |
| !!! | AGAAGATTAGTTTCATTGTT+AGG | + | tig0041156:6589-6608 | Msa1460940:intron | 25.0% |
| !!! | CAATGTAAAACTTTTGATTC+TGG | - | tig0041156:6689-6708 | Msa1460940:intergenic | 25.0% |
| !! | CAGAATCAAAAGTTTTACAT+TGG | + | tig0041156:6687-6706 | Msa1460940:intron | 25.0% |
| ! | TCAATTGTAGAATTAACCAA+AGG | - | tig0041156:6718-6737 | Msa1460940:intergenic | 25.0% |
| ! | GATGTAAATTTAACATCACA+AGG | + | tig0041156:6880-6899 | Msa1460940:CDS | 25.0% |
| ! | TGATTCAAAAATGTATCCAA+AGG | + | tig0041156:6963-6982 | Msa1460940:CDS | 25.0% |
| ! | AAGTCTTGAATCATTCATAA+TGG | - | tig0041156:7308-7327 | Msa1460940:intergenic | 25.0% |
| ! | ATTAGAATCTTGGTCAATTA+TGG | - | tig0041156:7444-7463 | Msa1460940:intergenic | 25.0% |
| ! | AGGATGGTTTATGAAATTAA+TGG | + | tig0041156:7633-7652 | Msa1460940:CDS | 25.0% |
| ! | TGGTTTATGAAATTAATGGA+AGG | + | tig0041156:7637-7656 | Msa1460940:CDS | 25.0% |
| !!! | ATAGTTTTTGTTTGTGCTAA+GGG | - | tig0041156:7934-7953 | Msa1460940:intergenic | 25.0% |
| !!! | TATAGTTTTTGTTTGTGCTA+AGG | - | tig0041156:7935-7954 | Msa1460940:intergenic | 25.0% |
| !!! | TTTGTTTGAGGTTTTGAATT+GGG | + | tig0041156:8630-8649 | Msa1460940:CDS | 25.0% |
| ! | TGAAACAAATCATACTTAAC+AGG | - | tig0041156:8793-8812 | Msa1460940:intergenic | 25.0% |
| TCAGTCAACTATTTCAAGAA+AGG | - | tig0041156:1767-1786 | Msa0141340:intergenic | 30.0% | |
| TTCGGTAATTCTAGCAAAAT+GGG | + | tig0041156:2148-2167 | Msa1460940:exon | 30.0% | |
| CTTTCTATCTAGCTGAAATA+AGG | - | tig0041156:2188-2207 | Msa1460940:intergenic | 30.0% | |
| GAATGCTAAAATAAGTGCAA+AGG | - | tig0041156:2236-2255 | Msa1460940:intergenic | 30.0% | |
| CATAAGGTAGGTCAAAATAT+TGG | - | tig0041156:2258-2277 | Msa1460940:intergenic | 30.0% | |
| !!! | CAATATTTTGACCTACCTTA+TGG | + | tig0041156:2256-2275 | Msa1460940:CDS | 30.0% |
| CTAGGATATGAATATGATGT+AGG | - | tig0041156:2295-2314 | Msa1460940:intergenic | 30.0% | |
| GTTTCATTAACTTTGTCAAG+AGG | - | tig0041156:2418-2437 | Msa1460940:intergenic | 30.0% | |
| TTCAAGAACTGTTATAGGTA+TGG | + | tig0041156:2465-2484 | Msa1460940:CDS | 30.0% | |
| TTATAGGTATGGATTTGTCA+AGG | + | tig0041156:2476-2495 | Msa1460940:CDS | 30.0% | |
| TATAGGTATGGATTTGTCAA+GGG | + | tig0041156:2477-2496 | Msa1460940:CDS | 30.0% | |
| AATTTCAGAGTCCTTTGATA+AGG | - | tig0041156:2644-2663 | Msa1460940:intergenic | 30.0% | |
| TCTGATATTGATGTTATCTC+TGG | - | tig0041156:2784-2803 | Msa1460940:intergenic | 30.0% | |
| ATGGAAACATTGTGAAAAAG+AGG | - | tig0041156:3040-3059 | Msa1460940:intergenic | 30.0% | |
| ACAATGTTTCCATGTTTAAG+AGG | + | tig0041156:3047-3066 | Msa1460940:CDS | 30.0% | |
| !!! | GGTATTTCTGGTTTTGAAAA+TGG | + | tig0041156:3087-3106 | Msa1460940:intron | 30.0% |
| TATTAGGAGCTATGAATTGA+TGG | + | tig0041156:3758-3777 | Msa1460940:intron | 30.0% | |
| AAAGTGTATGTATACAGAGA+AGG | + | tig0041156:3792-3811 | Msa1460940:CDS | 30.0% | |
| AAGTGTATGTATACAGAGAA+GGG | + | tig0041156:3793-3812 | Msa1460940:CDS | 30.0% | |
| GCATATATTCCCAAAAGATA+TGG | - | tig0041156:3840-3859 | Msa1460940:intergenic | 30.0% | |
| AAAAGGTAAGTAAAACAGGT+GGG | - | tig0041156:3931-3950 | Msa1460940:intergenic | 30.0% | |
| TAAAAGGTAAGTAAAACAGG+TGG | - | tig0041156:3932-3951 | Msa1460940:intergenic | 30.0% | |
| AGTTATTCAGATACTGCATT+AGG | - | tig0041156:4010-4029 | Msa1460940:intergenic | 30.0% | |
| !!! | TTTTCTGTGTCAGTTTGTTA+AGG | + | tig0041156:4143-4162 | Msa1460940:intron | 30.0% |
| ACGATTTCAGGGAATAAATT+GGG | + | tig0041156:4377-4396 | Msa1460940:intron | 30.0% | |
| ! | ATTGTAGGTGTCACATAATT+TGG | - | tig0041156:4469-4488 | Msa1460940:intergenic | 30.0% |
| ! | AAGTATTGTGTTTGTCCAAA+GGG | + | tig0041156:4903-4922 | Msa1460940:CDS | 30.0% |
| ATGTGTTCCGGTTATTATAT+CGG | + | tig0041156:4971-4990 | Msa1460940:CDS | 30.0% | |
| CAATTCAAAACCTCGAAAAA+AGG | - | tig0041156:5011-5030 | Msa1460940:intergenic | 30.0% | |
| !!! | CTTTTTTCGAGGTTTTGAAT+TGG | + | tig0041156:5009-5028 | Msa1460940:CDS | 30.0% |
| !!! | ATCGTTTGCTGTTTTTGTTT+TGG | + | tig0041156:5034-5053 | Msa1460940:CDS | 30.0% |
| ACATGATACTCCATTCTATT+TGG | + | tig0041156:5192-5211 | Msa1460940:intron | 30.0% | |
| AAAATCCTGTTTACTCTACA+TGG | - | tig0041156:5277-5296 | Msa1460940:intergenic | 30.0% | |
| GAACTTCGTATCTATGAAAA+TGG | + | tig0041156:5658-5677 | Msa1460940:intron | 30.0% | |
| TACAACAAGGTGACAAAAAA+AGG | + | tig0041156:5696-5715 | Msa1460940:intron | 30.0% | |
| GATAAATTGGGAATTGAGTT+TGG | + | tig0041156:5720-5739 | Msa1460940:intron | 30.0% | |
| !!! | AACCACTTTTTGACAACTTT+TGG | + | tig0041156:5760-5779 | Msa1460940:intron | 30.0% |
| TGTTACATCTACCAGTAAAA+TGG | - | tig0041156:5943-5962 | Msa1460940:intergenic | 30.0% | |
| AAAACATAGGAGTAGAAGAT+CGG | - | tig0041156:6022-6041 | Msa1460940:intergenic | 30.0% | |
| ! | CCTATGTTTTTCTATGCAAA+CGG | + | tig0041156:6032-6051 | Msa1460940:intron | 30.0% |
| ATTTCCTAACATATGCACTT+AGG | + | tig0041156:6173-6192 | Msa1460940:intron | 30.0% | |
| TTTCCTAACATATGCACTTA+GGG | + | tig0041156:6174-6193 | Msa1460940:intron | 30.0% | |
| TATGTTCTGTCTGTTTCAAA+AGG | - | tig0041156:6242-6261 | Msa1460940:intergenic | 30.0% | |
| !! | ATTTGGTGAAGGTTTTTGAT+GGG | - | tig0041156:6373-6392 | Msa1460940:intergenic | 30.0% |
| !! | AATTTGGTGAAGGTTTTTGA+TGG | - | tig0041156:6374-6393 | Msa1460940:intergenic | 30.0% |
| ! | AAAGTTGCTAAATTTGGTGA+AGG | - | tig0041156:6384-6403 | Msa1460940:intergenic | 30.0% |
| GGTACAAAAGTTGCTAAATT+TGG | - | tig0041156:6390-6409 | Msa1460940:intergenic | 30.0% | |
| ! | TTTTGTACCTGATCTCAAAT+GGG | + | tig0041156:6401-6420 | Msa1460940:intron | 30.0% |
| AAGGTTTAATGGAAACTTCA+TGG | - | tig0041156:6472-6491 | Msa1460940:intergenic | 30.0% | |
| ! | AACCTTGATTCATTTTCTTG+TGG | + | tig0041156:6486-6505 | Msa1460940:intron | 30.0% |
| TACCACAAGAAAATGAATCA+AGG | - | tig0041156:6491-6510 | Msa1460940:intergenic | 30.0% | |
| TACATTCTGCAATTGTAACA+TGG | + | tig0041156:6528-6547 | Msa1460940:intron | 30.0% | |
| ! | TTTTACATTGGATACACCTT+TGG | + | tig0041156:6699-6718 | Msa1460940:CDS | 30.0% |
| CCAATTGCTATATTTCGTAA+TGG | - | tig0041156:6787-6806 | Msa1460940:intergenic | 30.0% | |
| CCATTACGAAATATAGCAAT+TGG | + | tig0041156:6784-6803 | Msa1460940:CDS | 30.0% | |
| TGTAACTTGATCTAATGAAG+AGG | - | tig0041156:6818-6837 | Msa1460940:intergenic | 30.0% | |
| AAAGAACTTGAAACTGTTGT+TGG | + | tig0041156:6853-6872 | Msa1460940:CDS | 30.0% | |
| TCAAAAATGTATCCAAAGGA+TGG | + | tig0041156:6967-6986 | Msa1460940:CDS | 30.0% | |
| GCTAATTACAATGCAACAAA+AGG | + | tig0041156:7009-7028 | Msa1460940:CDS | 30.0% | |
| TGAGATGAACTTAATGTTAC+AGG | + | tig0041156:7095-7114 | Msa1460940:CDS | 30.0% | |
| GAGATGAACTTAATGTTACA+GGG | + | tig0041156:7096-7115 | Msa1460940:CDS | 30.0% | |
| CATCTACACATTGTAACAAA+TGG | - | tig0041156:7166-7185 | Msa1460940:intergenic | 30.0% | |
| ! | CATTTGTTACAATGTGTAGA+TGG | + | tig0041156:7164-7183 | Msa1460940:intron | 30.0% |
| CTTGAATCATTCATAATGGT+AGG | - | tig0041156:7304-7323 | Msa1460940:intergenic | 30.0% | |
| AAGGAGACATTTCTGTATAA+AGG | - | tig0041156:7337-7356 | Msa1460940:intergenic | 30.0% | |
| ! | GTAGTTATGTTAGTTTCCTT+CGG | + | tig0041156:7496-7515 | Msa1460940:intron | 30.0% |
| !! | CATTAGTTCTATTCCAGAAA+GGG | - | tig0041156:7825-7844 | Msa1460940:intergenic | 30.0% |
| !! | TAGTTTTTGTTTGTGCTAAG+GGG | - | tig0041156:7933-7952 | Msa1460940:intergenic | 30.0% |
| TGCTTCTATTTAAGTCTAGA+AGG | + | tig0041156:8003-8022 | Msa1460940:intron | 30.0% | |
| ! | TGATGTAACCTATTTGCTTT+TGG | + | tig0041156:8070-8089 | Msa1460940:intron | 30.0% |
| ACTATAGTCCAAAAGCAAAT+AGG | - | tig0041156:8081-8100 | Msa1460940:intergenic | 30.0% | |
| ATTAACAAGCACAATTTCTC+AGG | + | tig0041156:8181-8200 | Msa1460940:intron | 30.0% | |
| ATTGAAGTAGGATTCAAGAT+AGG | + | tig0041156:8263-8282 | Msa1460940:CDS | 30.0% | |
| !! | TTTTATTCCTCCTTTGTTTG+AGG | + | tig0041156:8618-8637 | Msa1460940:CDS | 30.0% |
| CAATTCAAAACCTCAAACAA+AGG | - | tig0041156:8631-8650 | Msa1460940:intergenic | 30.0% | |
| !!! | CTTTGTTTGAGGTTTTGAAT+TGG | + | tig0041156:8629-8648 | Msa1460940:CDS | 30.0% |
| TATATCGGAAGAGAAATACT+TGG | + | tig0041156:8714-8733 | Msa1460940:CDS | 30.0% | |
| ! | AGGTGCAAGAACATTTTATT+TGG | + | tig0041156:8758-8777 | Msa1460940:CDS | 30.0% |
| ACATGCTTCTTCATTCAATT+TGG | + | tig0041156:8812-8831 | Msa1460940:CDS | 30.0% | |
| !! | AGAAATAGAAAGTACCTACC+TGG | - | tig0041156:2016-2035 | Msa1460940:intergenic | 35.0% |
| TGAGTGAGAACTAAGAAACA+TGG | - | tig0041156:2083-2102 | Msa1460940:intergenic | 35.0% | |
| GTTCGGTAATTCTAGCAAAA+TGG | + | tig0041156:2147-2166 | Msa1460940:exon | 35.0% | |
| CTAGAATGTTACCATAAGGT+AGG | - | tig0041156:2270-2289 | Msa1460940:intergenic | 35.0% | |
| GGTACTAGAATGTTACCATA+AGG | - | tig0041156:2274-2293 | Msa1460940:intergenic | 35.0% | |
| ATACTACTACTGCTACTACT+AGG | - | tig0041156:2313-2332 | Msa1460940:intergenic | 35.0% | |
| CTAAATATTTCAGAGGCAGA+TGG | - | tig0041156:2355-2374 | Msa1460940:intergenic | 35.0% | |
| TAATGAAACTAGGGTGTATC+AGG | + | tig0041156:2429-2448 | Msa1460940:CDS | 35.0% | |
| AAATATGTTGGTGCAATTGC+AGG | - | tig0041156:2541-2560 | Msa1460940:intergenic | 35.0% | |
| ! | TTTGATAAGGCTTTTGTTGG+AGG | - | tig0041156:2631-2650 | Msa1460940:intergenic | 35.0% |
| ! | TCCAACAAAAGCCTTATCAA+AGG | + | tig0041156:2630-2649 | Msa1460940:CDS | 35.0% |
| ! | TCCTTTGATAAGGCTTTTGT+TGG | - | tig0041156:2634-2653 | Msa1460940:intergenic | 35.0% |
| ! | ACATTGACGTCGTCTTTTAA+TGG | - | tig0041156:2697-2716 | Msa1460940:intergenic | 35.0% |
| ! | TGTTGCTAACTTGTGTTTAG+AGG | + | tig0041156:2918-2937 | Msa1460940:intron | 35.0% |
| ! | TGTGAAAAAGAGGAGCATAA+AGG | - | tig0041156:3030-3049 | Msa1460940:intergenic | 35.0% |
| ATATATGACACAAGCACTTG+TGG | + | tig0041156:3278-3297 | Msa1460940:intron | 35.0% | |
| !! | ACTGAAAACAACTTTTGGGT+AGG | - | tig0041156:3339-3358 | Msa1460940:intergenic | 35.0% |
| ! | TGATATTCTGTAGACCCTTT+TGG | - | tig0041156:3592-3611 | Msa1460940:intergenic | 35.0% |
| CACCTTAACTGCCAATTATT+AGG | + | tig0041156:3742-3761 | Msa1460940:intron | 35.0% | |
| CTCCTAATAATTGGCAGTTA+AGG | - | tig0041156:3747-3766 | Msa1460940:intergenic | 35.0% | |
| AGATATGGTGAGTGCATTAT+TGG | - | tig0041156:3825-3844 | Msa1460940:intergenic | 35.0% | |
| ! | AATGCACTCACCATATCTTT+TGG | + | tig0041156:3827-3846 | Msa1460940:CDS | 35.0% |
| ! | ATGCACTCACCATATCTTTT+GGG | + | tig0041156:3828-3847 | Msa1460940:CDS | 35.0% |
| !!! | ACTTACCTTTTAGTTCTCGA+AGG | + | tig0041156:3940-3959 | Msa1460940:CDS | 35.0% |
| ATTCCAGAAAGAATGTTTCC+TGG | - | tig0041156:4048-4067 | Msa1460940:intergenic | 35.0% | |
| !! | CATTCTTTCTGGAATAGAAC+AGG | + | tig0041156:4053-4072 | Msa1460940:CDS | 35.0% |
| GAGAAAAACATACCCAATCA+TGG | - | tig0041156:4106-4125 | Msa1460940:intergenic | 35.0% | |
| GACGATTTCAGGGAATAAAT+TGG | + | tig0041156:4376-4395 | Msa1460940:intron | 35.0% | |
| !!! | AGCGTTTTTCTCTTTGAAAC+CGG | - | tig0041156:4738-4757 | Msa1460940:intergenic | 35.0% |
| !!! | AAAACGCTTGCATTTTTTGC+AGG | + | tig0041156:4750-4769 | Msa1460940:CDS | 35.0% |
| ! | ATACCGAAGATTTTCATGTC+GGG | - | tig0041156:4831-4850 | Msa1460940:intergenic | 35.0% |
| ! | CATACCGAAGATTTTCATGT+CGG | - | tig0041156:4832-4851 | Msa1460940:intergenic | 35.0% |
| ! | CAAGTATTGTGTTTGTCCAA+AGG | + | tig0041156:4902-4921 | Msa1460940:CDS | 35.0% |
| CTGTTTACTTCATATCCCTT+TGG | - | tig0041156:4921-4940 | Msa1460940:intergenic | 35.0% | |
| TATCATCTACGAATGTGTTC+CGG | + | tig0041156:4959-4978 | Msa1460940:CDS | 35.0% | |
| TTCAAAACCTCGAAAAAAGG+AGG | - | tig0041156:5008-5027 | Msa1460940:intergenic | 35.0% | |
| !!! | TGCTGTTTTTGTTTTGGAGA+AGG | + | tig0041156:5040-5059 | Msa1460940:CDS | 35.0% |
| TTGTTTCCATCCCAAAAAAG+AGG | + | tig0041156:5087-5106 | Msa1460940:CDS | 35.0% | |
| !!! | AAGATACCTCTTTTTTGGGA+TGG | - | tig0041156:5096-5115 | Msa1460940:intergenic | 35.0% |
| ! | AAGTACAGCAGCATTTTCTT+TGG | + | tig0041156:5138-5157 | Msa1460940:CDS | 35.0% |
| ACCATATGATTCACAAGACA+CGG | - | tig0041156:5480-5499 | Msa1460940:intergenic | 35.0% | |
| !!! | TATTTTTGGCAGTATTCCCA+AGG | - | tig0041156:5634-5653 | Msa1460940:intergenic | 35.0% |
| GTCCAAAAGTTGTCAAAAAG+TGG | - | tig0041156:5765-5784 | Msa1460940:intergenic | 35.0% | |
| AAAACAATGGAGAGAGGAAA+AGG | - | tig0041156:5832-5851 | Msa1460940:intergenic | 35.0% | |
| ! | CCATTTGATGACAACTTTGT+TGG | - | tig0041156:5886-5905 | Msa1460940:intergenic | 35.0% |
| CCAACAAAGTTGTCATCAAA+TGG | + | tig0041156:5883-5902 | Msa1460940:intron | 35.0% | |
| TAGAAGATCGGAGAAAAATG+AGG | - | tig0041156:6010-6029 | Msa1460940:intergenic | 35.0% | |
| CCGTTTGCATAGAAAAACAT+AGG | - | tig0041156:6035-6054 | Msa1460940:intergenic | 35.0% | |
| AGAGAGAAATAACGTGTTAC+CGG | - | tig0041156:6315-6334 | Msa1460940:intergenic | 35.0% | |
| ! | CTTTTGTACCTGATCTCAAA+TGG | + | tig0041156:6400-6419 | Msa1460940:intron | 35.0% |
| TGCAATTGTAACATGGATCT+GGG | + | tig0041156:6535-6554 | Msa1460940:intron | 35.0% | |
| TGAATCAAAGAATGTTCCGT+TGG | - | tig0041156:6950-6969 | Msa1460940:intergenic | 35.0% | |
| ! | GTATCCAAAGGATGGAATTT+TGG | + | tig0041156:6975-6994 | Msa1460940:CDS | 35.0% |
| TTGGAATTCTTCGAAATCGT+GGG | - | tig0041156:7045-7064 | Msa1460940:intergenic | 35.0% | |
| ! | TTTGGAATTCTTCGAAATCG+TGG | - | tig0041156:7046-7065 | Msa1460940:intergenic | 35.0% |
| ! | CACTTTCAATGGCTTCTTTT+TGG | - | tig0041156:7064-7083 | Msa1460940:intergenic | 35.0% |
| CAAAAAGAAGCCATTGAAAG+TGG | + | tig0041156:7062-7081 | Msa1460940:CDS | 35.0% | |
| GATATCGTAACCACTTTCAA+TGG | - | tig0041156:7075-7094 | Msa1460940:intergenic | 35.0% | |
| GGAAATAATGAAAGCGAAGT+CGG | + | tig0041156:7264-7283 | Msa1460940:CDS | 35.0% | |
| ! | GAAATGTCTCCTTGTTTAGA+AGG | + | tig0041156:7344-7363 | Msa1460940:CDS | 35.0% |
| TGATACCTACCTTCTAAACA+AGG | - | tig0041156:7356-7375 | Msa1460940:intergenic | 35.0% | |
| TGAGCTAAATCACTGCATTA+AGG | + | tig0041156:7413-7432 | Msa1460940:intron | 35.0% | |
| GCTCAAAGTTTATATCTACG+CGG | + | tig0041156:7555-7574 | Msa1460940:CDS | 35.0% | |
| AAAGTTTATATCTACGCGGA+TGG | + | tig0041156:7559-7578 | Msa1460940:CDS | 35.0% | |
| AGTAATGGCTCATGAAAGAT+TGG | - | tig0041156:7592-7611 | Msa1460940:intergenic | 35.0% | |
| AATCTTTCATGAGCCATTAC+TGG | + | tig0041156:7591-7610 | Msa1460940:CDS | 35.0% | |
| GCATATATTCCATCCAGTAA+TGG | - | tig0041156:7607-7626 | Msa1460940:intergenic | 35.0% | |
| GATGGAATATATGCATCTGA+AGG | + | tig0041156:7613-7632 | Msa1460940:CDS | 35.0% | |
| GAATATATGCATCTGAAGGA+TGG | + | tig0041156:7617-7636 | Msa1460940:CDS | 35.0% | |
| TGCAACAATCTTGAACTGAA+AGG | - | tig0041156:7715-7734 | Msa1460940:intergenic | 35.0% | |
| AATCATGTTGACATGATTGC+TGG | + | tig0041156:7793-7812 | Msa1460940:CDS | 35.0% | |
| !! | CCATTAGTTCTATTCCAGAA+AGG | - | tig0041156:7826-7845 | Msa1460940:intergenic | 35.0% |
| !! | CCTTTCTGGAATAGAACTAA+TGG | + | tig0041156:7823-7842 | Msa1460940:CDS | 35.0% |
| CCAAATGCATGACGAAAAAT+GGG | - | tig0041156:7963-7982 | Msa1460940:intergenic | 35.0% | |
| TCCAAATGCATGACGAAAAA+TGG | - | tig0041156:7964-7983 | Msa1460940:intergenic | 35.0% | |
| TAACCATCTCACTCAAATAC+AGG | + | tig0041156:8035-8054 | Msa1460940:intron | 35.0% | |
| AACCATCTCACTCAAATACA+GGG | + | tig0041156:8036-8055 | Msa1460940:intron | 35.0% | |
| ACTGATGCGACTGAAATTAA+TGG | - | tig0041156:8144-8163 | Msa1460940:intergenic | 35.0% | |
| GAGAATCCTGTCAAAAATCT+AGG | + | tig0041156:8326-8345 | Msa1460940:CDS | 35.0% | |
| AATCCTGTCAAAAATCTAGG+TGG | + | tig0041156:8329-8348 | Msa1460940:CDS | 35.0% | |
| GAACCTGACATGAAAATATC+CGG | + | tig0041156:8446-8465 | Msa1460940:CDS | 35.0% | |
| TTTGCATTACCTTTGACATG+CGG | - | tig0041156:8479-8498 | Msa1460940:intergenic | 35.0% | |
| CAAATTCTGTATCTGTGCAA+GGG | + | tig0041156:8523-8542 | Msa1460940:intron | 35.0% | |
| TTCAAAACCTCAAACAAAGG+AGG | - | tig0041156:8628-8647 | Msa1460940:intergenic | 35.0% | |
| !! | ATCATTTGCTGTGTTTATCG+AGG | + | tig0041156:8654-8673 | Msa1460940:CDS | 35.0% |
| AGAGAGGAAAACCGTTAAAC+TGG | + | tig0041156:1868-1887 | Msa1460940:five_prime_UTR | 40.0% | |
| GAGAGGAAAACCGTTAAACT+GGG | + | tig0041156:1869-1888 | Msa1460940:five_prime_UTR | 40.0% | |
| GAAGCAAAACAGGACAAAAG+CGG | - | tig0041156:1945-1964 | Msa1460940:intergenic | 40.0% | |
| AAGTTGTAGCGAAGCAAAAC+AGG | - | tig0041156:1955-1974 | Msa1460940:intergenic | 40.0% | |
| TACCTGGTACTAAGTAGTTC+CGG | - | tig0041156:2000-2019 | Msa1460940:intergenic | 40.0% | |
| ! | GTTTCTTAGTTCTCACTCAC+TGG | + | tig0041156:2084-2103 | Msa1460940:intron | 40.0% |
| !! | GGTGGTGGAGTTAAATATGT+TGG | - | tig0041156:2553-2572 | Msa1460940:intergenic | 40.0% |
| CTGATTCCATGAATGATGAG+AGG | + | tig0041156:2665-2684 | Msa1460940:CDS | 40.0% | |
| CTTGAACCTCTCATCATTCA+TGG | - | tig0041156:2674-2693 | Msa1460940:intergenic | 40.0% | |
| TTCTATCGTAACTGTGCCTA+AGG | + | tig0041156:2732-2751 | Msa1460940:CDS | 40.0% | |
| AGAGAACTTGTAGTCACCTT+AGG | - | tig0041156:2751-2770 | Msa1460940:intergenic | 40.0% | |
| ! | TAACTTGTGTTTAGAGGCCA+AGG | + | tig0041156:2924-2943 | Msa1460940:intron | 40.0% |
| TTTCCAACATCAGTTACAGC+TGG | - | tig0041156:3007-3026 | Msa1460940:intergenic | 40.0% | |
| TTTGGGAATATATGCTTCCG+AGG | + | tig0041156:3845-3864 | Msa1460940:CDS | 40.0% | |
| TTGGGAATATATGCTTCCGA+GGG | + | tig0041156:3846-3865 | Msa1460940:CDS | 40.0% | |
| TGTCACGAAAGATGCAAAGA+AGG | + | tig0041156:3905-3924 | Msa1460940:CDS | 40.0% | |
| TTGCCAGGAAACATTCTTTC+TGG | + | tig0041156:4042-4061 | Msa1460940:CDS | 40.0% | |
| !! | TCTTTCTGGAATAGAACAGG+AGG | + | tig0041156:4056-4075 | Msa1460940:CDS | 40.0% |
| ! | TTCTTGTTGCTTGCCATGAT+TGG | + | tig0041156:4090-4109 | Msa1460940:CDS | 40.0% |
| ! | TCTTGTTGCTTGCCATGATT+GGG | + | tig0041156:4091-4110 | Msa1460940:CDS | 40.0% |
| CAAAGGGACTTACATGATCA+AGG | - | tig0041156:4355-4374 | Msa1460940:intergenic | 40.0% | |
| TTCCCTGAAATCGTCTCAAA+GGG | - | tig0041156:4371-4390 | Msa1460940:intergenic | 40.0% | |
| ATTCCCTGAAATCGTCTCAA+AGG | - | tig0041156:4372-4391 | Msa1460940:intergenic | 40.0% | |
| CCAAAGAAGGTTTCGTGTTA+GGG | + | tig0041156:4643-4662 | Msa1460940:CDS | 40.0% | |
| GATCCCGACATGAAAATCTT+CGG | + | tig0041156:4825-4844 | Msa1460940:CDS | 40.0% | |
| !! | TTTTGTGCCTCCTTTTTTCG+AGG | + | tig0041156:4998-5017 | Msa1460940:CDS | 40.0% |
| CTCTGCTGTACCAAATAGAA+TGG | - | tig0041156:5205-5224 | Msa1460940:intergenic | 40.0% | |
| ACACTCCATGTAGAGTAAAC+AGG | + | tig0041156:5269-5288 | Msa1460940:intron | 40.0% | |
| AATCCTATTCCTTCGCTGAT+TGG | + | tig0041156:5436-5455 | Msa1460940:intron | 40.0% | |
| ATTAAACTGCCAATCAGCGA+AGG | - | tig0041156:5448-5467 | Msa1460940:intergenic | 40.0% | |
| ACCGTGTCTTGTGAATCATA+TGG | + | tig0041156:5476-5495 | Msa1460940:intron | 40.0% | |
| GTCTTGTGAATCATATGGTG+TGG | + | tig0041156:5481-5500 | Msa1460940:intron | 40.0% | |
| !! | CTAGTGTGCGTTTGGAATTT+TGG | + | tig0041156:5563-5582 | Msa1460940:intron | 40.0% |
| TGGTCAAAAACAATGGAGAG+AGG | - | tig0041156:5838-5857 | Msa1460940:intergenic | 40.0% | |
| !! | ACGTTTTTGGGCAGAAGTTA+AGG | + | tig0041156:6059-6078 | Msa1460940:intron | 40.0% |
| ACAAATCCTTTCTCCACTGT+CGG | + | tig0041156:6275-6294 | Msa1460940:intron | 40.0% | |
| ! | AAGCAAACCCATTTGAGATC+AGG | - | tig0041156:6411-6430 | Msa1460940:intergenic | 40.0% |
| ATGGATCACCCATCATGAAA+TGG | - | tig0041156:6453-6472 | Msa1460940:intergenic | 40.0% | |
| CTGCAATTGTAACATGGATC+TGG | + | tig0041156:6534-6553 | Msa1460940:intron | 40.0% | |
| TGATCTAATGAAGAGGCTTG+AGG | - | tig0041156:6811-6830 | Msa1460940:intergenic | 40.0% | |
| AAGAATGTTCCGTTGGACAA+TGG | - | tig0041156:6943-6962 | Msa1460940:intergenic | 40.0% | |
| GCTTCCAAAATTCCATCCTT+TGG | - | tig0041156:6982-7001 | Msa1460940:intergenic | 40.0% | |
| GAGTTCTTCAGCTGTTAATG+TGG | + | tig0041156:7243-7262 | Msa1460940:CDS | 40.0% | |
| ! | TGTCTCCTTGTTTAGAAGGT+AGG | + | tig0041156:7348-7367 | Msa1460940:intron | 40.0% |
| TTGCAGGAGTTACGAACTAA+TGG | + | tig0041156:7525-7544 | Msa1460940:intron | 40.0% | |
| TTTCATGAGCCATTACTGGA+TGG | + | tig0041156:7595-7614 | Msa1460940:CDS | 40.0% | |
| TAAAACAAGTGAGCCTTCTC+AGG | - | tig0041156:7688-7707 | Msa1460940:intergenic | 40.0% | |
| CAATCATACACACCCAATCA+TGG | - | tig0041156:7873-7892 | Msa1460940:intergenic | 40.0% | |
| !! | CCCATTTTTCGTCATGCATT+TGG | + | tig0041156:7960-7979 | Msa1460940:intron | 40.0% |
| TTCCCTGTATTTGAGTGAGA+TGG | - | tig0041156:8041-8060 | Msa1460940:intergenic | 40.0% | |
| TGCAATGCTGACATTGAAGT+AGG | + | tig0041156:8251-8270 | Msa1460940:CDS | 40.0% | |
| ! | TTGCCACCTAGATTTTTGAC+AGG | - | tig0041156:8335-8354 | Msa1460940:intergenic | 40.0% |
| CCAGCAAAAAATGCTAGGAT+AGG | - | tig0041156:8374-8393 | Msa1460940:intergenic | 40.0% | |
| !!! | CCTATCCTAGCATTTTTTGC+TGG | + | tig0041156:8371-8390 | Msa1460940:CDS | 40.0% |
| !!! | ATCCTAGCATTTTTTGCTGG+TGG | + | tig0041156:8374-8393 | Msa1460940:CDS | 40.0% |
| AACCACCAGCAAAAAATGCT+AGG | - | tig0041156:8379-8398 | Msa1460940:intergenic | 40.0% | |
| !!! | TTTTTTGCTGGTGGTTTGCA+CGG | + | tig0041156:8383-8402 | Msa1460940:CDS | 40.0% |
| GCCTATGCTGTTGAAGTTAT+GGG | + | tig0041156:8415-8434 | Msa1460940:CDS | 40.0% | |
| TCCCATAACTTCAACAGCAT+AGG | - | tig0041156:8419-8438 | Msa1460940:intergenic | 40.0% | |
| GCAAATTCTGTATCTGTGCA+AGG | + | tig0041156:8522-8541 | Msa1460940:intron | 40.0% | |
| AATACTTGGAGATGCAGAAG+AGG | + | tig0041156:8728-8747 | Msa1460940:CDS | 40.0% | |
| ATACTTGGAGATGCAGAAGA+GGG | + | tig0041156:8729-8748 | Msa1460940:CDS | 40.0% | |
| AGGAAAACCGTTAAACTGGG+TGG | + | tig0041156:1872-1891 | Msa1460940:five_prime_UTR | 45.0% | |
| !! | AAAGCGGTGCTGTTGATGTT+CGG | - | tig0041156:1929-1948 | Msa1460940:intergenic | 45.0% |
| GGTACTAAGTAGTTCCGGAT+AGG | - | tig0041156:1995-2014 | Msa1460940:intergenic | 45.0% | |
| ATCCGGAACTACTTAGTACC+AGG | + | tig0041156:1995-2014 | Msa1460940:five_prime_UTR | 45.0% | |
| GGAACTACTTAGTACCAGGT+AGG | + | tig0041156:1999-2018 | Msa1460940:intron | 45.0% | |
| TGGTGCAATTGCAGGAGAAA+GGG | - | tig0041156:2533-2552 | Msa1460940:intergenic | 45.0% | |
| TTGGTGCAATTGCAGGAGAA+AGG | - | tig0041156:2534-2553 | Msa1460940:intergenic | 45.0% | |
| TTTGTTGGAGGAGTCGTAGT+AGG | - | tig0041156:2574-2593 | Msa1460940:intergenic | 45.0% | |
| CCATAGATCGATACGAAGCA+TGG | - | tig0041156:2831-2850 | Msa1460940:intergenic | 45.0% | |
| ! | CCATGCTTCGTATCGATCTA+TGG | + | tig0041156:2828-2847 | Msa1460940:CDS | 45.0% |
| TGTTGATCAAGAGCTACTGC+AGG | + | tig0041156:2958-2977 | Msa1460940:CDS | 45.0% | |
| AAGCACTTGTGGCACTGTTA+GGG | + | tig0041156:3289-3308 | Msa1460940:intron | 45.0% | |
| ! | AAGCCTTATCCCACTAAGTG+GGG | - | tig0041156:3467-3486 | Msa1460940:intergenic | 45.0% |
| ! | CAAGCCTTATCCCACTAAGT+GGG | - | tig0041156:3468-3487 | Msa1460940:intergenic | 45.0% |
| GAATATATGCTTCCGAGGGA+TGG | + | tig0041156:3850-3869 | Msa1460940:CDS | 45.0% | |
| TCGAGCCTTCGAGAACTAAA+AGG | - | tig0041156:3948-3967 | Msa1460940:intergenic | 45.0% | |
| !!! | TTTTAGTTCTCGAAGGCTCG+AGG | + | tig0041156:3947-3966 | Msa1460940:CDS | 45.0% |
| ACTATGTAGACACGATTGCC+AGG | + | tig0041156:4027-4046 | Msa1460940:CDS | 45.0% | |
| !! | AGTCCCTTTGAGACGATTTC+AGG | + | tig0041156:4365-4384 | Msa1460940:intron | 45.0% |
| !! | GTCCCTTTGAGACGATTTCA+GGG | + | tig0041156:4366-4385 | Msa1460940:intron | 45.0% |
| CACCTTCAGAAACAAAGCAG+CGG | + | tig0041156:4583-4602 | Msa1460940:CDS | 45.0% | |
| !! | ATCCGCTGCTTTGTTTCTGA+AGG | - | tig0041156:4588-4607 | Msa1460940:intergenic | 45.0% |
| CACGAAACCTTCTTTGGCAT+CGG | - | tig0041156:4640-4659 | Msa1460940:intergenic | 45.0% | |
| GCCAAAGAAGGTTTCGTGTT+AGG | + | tig0041156:4642-4661 | Msa1460940:CDS | 45.0% | |
| CCCTAACACGAAACCTTCTT+TGG | - | tig0041156:4646-4665 | Msa1460940:intergenic | 45.0% | |
| AGAAGGTTTCGTGTTAGGGA+AGG | + | tig0041156:4647-4666 | Msa1460940:CDS | 45.0% | |
| ! | TGGTGGGATTTTGTGCATTG+CGG | - | tig0041156:4698-4717 | Msa1460940:intergenic | 45.0% |
| !!! | ACGCTTGCATTTTTTGCAGG+CGG | + | tig0041156:4753-4772 | Msa1460940:CDS | 45.0% |
| !!! | TTTTTTGCAGGCGGTATGCA+CGG | + | tig0041156:4762-4781 | Msa1460940:CDS | 45.0% |
| AAACAGTCCAAGAGTTGTCG+AGG | + | tig0041156:4935-4954 | Msa1460940:CDS | 45.0% | |
| ATGATAGCCTCGACAACTCT+TGG | - | tig0041156:4945-4964 | Msa1460940:intergenic | 45.0% | |
| TAGCATCACTAGTGTGCGTT+TGG | + | tig0041156:5555-5574 | Msa1460940:intron | 45.0% | |
| AGAGAGGAAAAGGAAGAGAG+AGG | - | tig0041156:5822-5841 | Msa1460940:intergenic | 45.0% | |
| ! | TGCAAACGGTGACACGTTTT+TGG | + | tig0041156:6046-6065 | Msa1460940:intron | 45.0% |
| ! | GCAAACGGTGACACGTTTTT+GGG | + | tig0041156:6047-6066 | Msa1460940:intron | 45.0% |
| GTGCCCTAAGTGCATATGTT+AGG | - | tig0041156:6180-6199 | Msa1460940:intergenic | 45.0% | |
| ! | TTGATGGGTGAGTGAAGTGA+AGG | - | tig0041156:6358-6377 | Msa1460940:intergenic | 45.0% |
| TCATGCTTCTTCTCAGCTAC+TGG | + | tig0041156:7122-7141 | Msa1460940:CDS | 45.0% | |
| TCTCAGCTACTGGTATGTAC+TGG | + | tig0041156:7132-7151 | Msa1460940:intron | 45.0% | |
| TTAACAGCTGAAGAACTCGC+CGG | - | tig0041156:7241-7260 | Msa1460940:intergenic | 45.0% | |
| TACCACTGAAGATCCTGAGA+AGG | + | tig0041156:7672-7691 | Msa1460940:CDS | 45.0% | |
| !! | TTGCTGGAAAGTACCCTTTC+TGG | + | tig0041156:7809-7828 | Msa1460940:CDS | 45.0% |
| CAGTCGCATCAGTAATTGAG+TGG | + | tig0041156:8151-8170 | Msa1460940:intron | 45.0% | |
| GGCCTATGCTGTTGAAGTTA+TGG | + | tig0041156:8414-8433 | Msa1460940:CDS | 45.0% | |
| ! | GGACCGGATATTTTCATGTC+AGG | - | tig0041156:8452-8471 | Msa1460940:intergenic | 45.0% |
| TTACCTTTGACATGCGGCAA+CGG | - | tig0041156:8473-8492 | Msa1460940:intergenic | 45.0% | |
| CAAACTACATCGAGCTCATG+AGG | + | tig0041156:8495-8514 | Msa1460940:intron | 45.0% | |
| GATGCAGAAGAGGGTGAAAA+AGG | + | tig0041156:8738-8757 | Msa1460940:CDS | 45.0% | |
| !!! | TATTATATTTTTTTACAAAA+AGG | - | tig0041156:5307-5326 | Msa1460940:intergenic | 5.0% |
| CTCTCTCTTGACGAGGACTT+AGG | - | tig0041156:1848-1867 | Msa0141340:intergenic | 50.0% | |
| ACCGTTAAACTGGGTGGTGA+CGG | + | tig0041156:1878-1897 | Msa1460940:five_prime_UTR | 50.0% | |
| !! | GATAGGAGCGTCGAAGTCAA+AGG | - | tig0041156:1978-1997 | Msa1460940:intergenic | 50.0% |
| TTGACTTCGACGCTCCTATC+CGG | + | tig0041156:1978-1997 | Msa1460940:five_prime_UTR | 50.0% | |
| CTTGTGTTTAGAGGCCAAGG+TGG | + | tig0041156:2927-2946 | Msa1460940:intron | 50.0% | |
| TCAACAGCTGAAGACCACCT+TGG | - | tig0041156:2944-2963 | Msa1460940:intergenic | 50.0% | |
| GCACCAGCTGTAACTGATGT+TGG | + | tig0041156:3001-3020 | Msa1460940:CDS | 50.0% | |
| CAAGCACTTGTGGCACTGTT+AGG | + | tig0041156:3288-3307 | Msa1460940:intron | 50.0% | |
| ! | GCACTGTTAGGGAGAGCATA+TGG | + | tig0041156:3300-3319 | Msa1460940:intron | 50.0% |
| AAGTAGCTGACCCCACTTAG+TGG | + | tig0041156:3454-3473 | Msa1460940:intron | 50.0% | |
| AGTAGCTGACCCCACTTAGT+GGG | + | tig0041156:3455-3474 | Msa1460940:intron | 50.0% | |
| TGACCCCACTTAGTGGGATA+AGG | + | tig0041156:3461-3480 | Msa1460940:intron | 50.0% | |
| ! | CCAAGCCTTATCCCACTAAG+TGG | - | tig0041156:3469-3488 | Msa1460940:intergenic | 50.0% |
| CCACTTAGTGGGATAAGGCT+TGG | + | tig0041156:3466-3485 | Msa1460940:intron | 50.0% | |
| CAACCTCATGAACCATCCCT+CGG | - | tig0041156:3865-3884 | Msa1460940:intergenic | 50.0% | |
| GGGATGGTTCATGAGGTTGA+TGG | + | tig0041156:3866-3885 | Msa1460940:CDS | 50.0% | |
| ACCTTTGGACTGCAATCTGC+AGG | + | tig0041156:4560-4579 | Msa1460940:intron | 50.0% | |
| !! | TTTGGCATCGGCATTGCACA+GGG | - | tig0041156:4628-4647 | Msa1460940:intergenic | 50.0% |
| TGCAATGCCGATGCCAAAGA+AGG | + | tig0041156:4630-4649 | Msa1460940:CDS | 50.0% | |
| GCATTGCGGACGTAAGTTTC+AGG | - | tig0041156:4684-4703 | Msa1460940:intergenic | 50.0% | |
| CAAAATCCCACCAGAGACCT+CGG | + | tig0041156:4705-4724 | Msa1460940:CDS | 50.0% | |
| AAAATCCCACCAGAGACCTC+GGG | + | tig0041156:4706-4725 | Msa1460940:CDS | 50.0% | |
| AGTGCTGCAGCAGAATTGGA+CGG | - | tig0041156:4794-4813 | Msa1460940:intergenic | 50.0% | |
| TCCAATTCTGCTGCAGCACT+GGG | + | tig0041156:4794-4813 | Msa1460940:CDS | 50.0% | |
| GGTATGCTGCCAAAGTCGAA+GGG | + | tig0041156:4846-4865 | Msa1460940:CDS | 50.0% | |
| CTGCCAATCAGCGAAGGAAT+AGG | - | tig0041156:5442-5461 | Msa1460940:intergenic | 50.0% | |
| ! | AATGCACCGACAGTGGAGAA+AGG | - | tig0041156:6284-6303 | Msa1460940:intergenic | 50.0% |
| ! | TCATGAGAATGCACCGACAG+TGG | - | tig0041156:6291-6310 | Msa1460940:intergenic | 50.0% |
| GTCGGTGCATTCTCATGATC+CGG | + | tig0041156:6293-6312 | Msa1460940:intron | 50.0% | |
| !! | CCTATGGTGCCATTGTCCAA+CGG | + | tig0041156:6931-6950 | Msa1460940:CDS | 50.0% |
| !! | TTTCCTTCGGTGTCTCTTGC+AGG | + | tig0041156:7509-7528 | Msa1460940:intron | 50.0% |
| AGCCTTCTCAGGATCTTCAG+TGG | - | tig0041156:7677-7696 | Msa1460940:intergenic | 50.0% | |
| TTGTCGTTGCCTGCCATGAT+TGG | + | tig0041156:7857-7876 | Msa1460940:CDS | 50.0% | |
| TGTCGTTGCCTGCCATGATT+GGG | + | tig0041156:7858-7877 | Msa1460940:CDS | 50.0% | |
| CATACACACCCAATCATGGC+AGG | - | tig0041156:7869-7888 | Msa1460940:intergenic | 50.0% | |
| AGGCTCCTGCAGAAACAAGA+GGG | + | tig0041156:8201-8220 | Msa1460940:intron | 50.0% | |
| ! | GTGGTTTGCACGGTTACGTT+CGG | + | tig0041156:8393-8412 | Msa1460940:CDS | 50.0% |
| CGAAGTTAATAGTCCGCGTG+TGG | + | tig0041156:8549-8568 | Msa1460940:intron | 50.0% | |
| TAATAGTCCGCGTGTGGTAG+AGG | + | tig0041156:8555-8574 | Msa1460940:intron | 50.0% | |
| AATATCGCCTCTACCACACG+CGG | - | tig0041156:8565-8584 | Msa1460940:intergenic | 50.0% | |
| CCTCTCTCTCTCTCTTGACG+AGG | - | tig0041156:1855-1874 | Msa0141340:intergenic | 55.0% | |
| CCTCGTCAAGAGAGAGAGAG+AGG | + | tig0041156:1852-1871 | Msa1460940:five_prime_UTR | 55.0% | |
| CCCGTCACCACCCAGTTTAA+CGG | - | tig0041156:1882-1901 | Msa1460940:intergenic | 55.0% | |
| CCGTTAAACTGGGTGGTGAC+GGG | + | tig0041156:1879-1898 | Msa1460940:five_prime_UTR | 55.0% | |
| !! | CGGTGCTGTTGATGTTCGGT+CGG | - | tig0041156:1925-1944 | Msa1460940:intergenic | 55.0% |
| GAGGCAGATGGTGAATCTGC+AGG | - | tig0041156:2343-2362 | Msa1460940:intergenic | 55.0% | |
| GTTGGAGGAGTCGTAGTAGG+TGG | - | tig0041156:2571-2590 | Msa1460940:intergenic | 55.0% | |
| CTTCCGAGGGATGGTTCATG+AGG | + | tig0041156:3859-3878 | Msa1460940:CDS | 55.0% | |
| GCCTGCAGATTGCAGTCCAA+AGG | - | tig0041156:4564-4583 | Msa1460940:intergenic | 55.0% | |
| !! | CTTTGGCATCGGCATTGCAC+AGG | - | tig0041156:4629-4648 | Msa1460940:intergenic | 55.0% |
| AAATCCCACCAGAGACCTCG+GGG | + | tig0041156:4707-4726 | Msa1460940:CDS | 55.0% | |
| GTCCAATTCTGCTGCAGCAC+TGG | + | tig0041156:4793-4812 | Msa1460940:CDS | 55.0% | |
| TCCCAGTGCTGCAGCAGAAT+TGG | - | tig0041156:4798-4817 | Msa1460940:intergenic | 55.0% | |
| CGGTATGCTGCCAAAGTCGA+AGG | + | tig0041156:4845-4864 | Msa1460940:CDS | 55.0% | |
| TGCCAAAGTCGAAGGGAGAC+AGG | + | tig0041156:4853-4872 | Msa1460940:CDS | 55.0% | |
| CTCCTGTCTCCCTTCGACTT+TGG | - | tig0041156:4858-4877 | Msa1460940:intergenic | 55.0% | |
| CATAGGCTGTGGTGCAAGCA+AGG | - | tig0041156:6917-6936 | Msa1460940:intergenic | 55.0% | |
| CTTGCTTGCACCACAGCCTA+TGG | + | tig0041156:6915-6934 | Msa1460940:CDS | 55.0% | |
| GACAATGGCACCATAGGCTG+TGG | - | tig0041156:6928-6947 | Msa1460940:intergenic | 55.0% | |
| CCGTTGGACAATGGCACCAT+AGG | - | tig0041156:6934-6953 | Msa1460940:intergenic | 55.0% | |
| ACTCCTGCAAGAGACACCGA+AGG | - | tig0041156:7515-7534 | Msa1460940:intergenic | 55.0% | |
| CAGGCTCCTGCAGAAACAAG+AGG | + | tig0041156:8200-8219 | Msa1460940:intron | 55.0% | |
| !! | ATGCGCCCTCTTGTTTCTGC+AGG | - | tig0041156:8209-8228 | Msa1460940:intergenic | 55.0% |
| !! | GGATAGGCCTCTGAGATGGA+GGG | - | tig0041156:8358-8377 | Msa1460940:intergenic | 55.0% |
| !! | AGGATAGGCCTCTGAGATGG+AGG | - | tig0041156:8359-8378 | Msa1460940:intergenic | 55.0% |
| ! | GCTAGGATAGGCCTCTGAGA+TGG | - | tig0041156:8362-8381 | Msa1460940:intergenic | 55.0% |
| TTTGACATGCGGCAACGGAC+CGG | - | tig0041156:8468-8487 | Msa1460940:intergenic | 55.0% | |
| !! | TGGGTGGTGACGGGATCACA+GGG | + | tig0041156:1888-1907 | Msa1460940:five_prime_UTR | 60.0% |
| GACGGGATCACAGGGGAGTT+TGG | + | tig0041156:1896-1915 | Msa1460940:five_prime_UTR | 60.0% | |
| GGAGGAGTCGTAGTAGGTGG+TGG | - | tig0041156:2568-2587 | Msa1460940:intergenic | 60.0% | |
| AATCCCACCAGAGACCTCGG+GGG | + | tig0041156:4708-4727 | Msa1460940:CDS | 60.0% | |
| TTGAAACCGGTCTTCCCCCG+AGG | - | tig0041156:4725-4744 | Msa1460940:intergenic | 60.0% | |
| GTGGCAACCCTCCATCTCAG+AGG | + | tig0041156:8348-8367 | Msa1460940:CDS | 60.0% | |
| GGTCCGTTGCCGCATGTCAA+AGG | + | tig0041156:8467-8486 | Msa1460940:CDS | 60.0% | |
| !! | CTGGGTGGTGACGGGATCAC+AGG | + | tig0041156:1887-1906 | Msa1460940:five_prime_UTR | 65.0% |
| !! | GGGTGGTGACGGGATCACAG+GGG | + | tig0041156:1889-1908 | Msa1460940:five_prime_UTR | 65.0% |
| CTTCCCCCGAGGTCTCTGGT+GGG | - | tig0041156:4714-4733 | Msa1460940:intergenic | 65.0% | |
| TCTTCCCCCGAGGTCTCTGG+TGG | - | tig0041156:4715-4734 | Msa1460940:intergenic | 65.0% | |
| CAGAGACCTCGGGGGAAGAC+CGG | + | tig0041156:4716-4735 | Msa1460940:CDS | 65.0% | |
| CGGTCTTCCCCCGAGGTCTC+TGG | - | tig0041156:4718-4737 | Msa1460940:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0041156 | gene | 1680 | 8861 | 1680 | ID=Msa1460940;Name=Msa1460940 |
| tig0041156 | mRNA | 1680 | 8861 | 1680 | ID=Msa1460940-mRNA-1;Parent=Msa1460940;Name=Msa1460940-mRNA-1;_AED=0.20;_eAED=0.20;_QI=375|0.77|0.6|1|0.88|0.8|10|0|1088 |
| tig0041156 | exon | 1680 | 2016 | 1680 | ID=Msa1460940-mRNA-1:exon:22956;Parent=Msa1460940-mRNA-1 |
| tig0041156 | exon | 2128 | 2849 | 2128 | ID=Msa1460940-mRNA-1:exon:22957;Parent=Msa1460940-mRNA-1 |
| tig0041156 | exon | 2938 | 3068 | 2938 | ID=Msa1460940-mRNA-1:exon:22958;Parent=Msa1460940-mRNA-1 |
| tig0041156 | exon | 3764 | 4112 | 3764 | ID=Msa1460940-mRNA-1:exon:22959;Parent=Msa1460940-mRNA-1 |
| tig0041156 | exon | 4582 | 5177 | 4582 | ID=Msa1460940-mRNA-1:exon:22960;Parent=Msa1460940-mRNA-1 |
| tig0041156 | exon | 6690 | 7143 | 6690 | ID=Msa1460940-mRNA-1:exon:22961;Parent=Msa1460940-mRNA-1 |
| tig0041156 | exon | 7235 | 7365 | 7235 | ID=Msa1460940-mRNA-1:exon:22962;Parent=Msa1460940-mRNA-1 |
| tig0041156 | exon | 7531 | 7879 | 7531 | ID=Msa1460940-mRNA-1:exon:22963;Parent=Msa1460940-mRNA-1 |
| tig0041156 | exon | 8203 | 8488 | 8203 | ID=Msa1460940-mRNA-1:exon:22964;Parent=Msa1460940-mRNA-1 |
| tig0041156 | exon | 8575 | 8861 | 8575 | ID=Msa1460940-mRNA-1:exon:22965;Parent=Msa1460940-mRNA-1 |
| tig0041156 | five_prime_UTR | 1680 | 2016 | 1680 | ID=Msa1460940-mRNA-1:five_prime_utr;Parent=Msa1460940-mRNA-1 |
| tig0041156 | five_prime_UTR | 2128 | 2165 | 2128 | ID=Msa1460940-mRNA-1:five_prime_utr;Parent=Msa1460940-mRNA-1 |
| tig0041156 | CDS | 2166 | 2849 | 2166 | ID=Msa1460940-mRNA-1:cds;Parent=Msa1460940-mRNA-1 |
| tig0041156 | CDS | 2938 | 3068 | 2938 | ID=Msa1460940-mRNA-1:cds;Parent=Msa1460940-mRNA-1 |
| tig0041156 | CDS | 3764 | 4112 | 3764 | ID=Msa1460940-mRNA-1:cds;Parent=Msa1460940-mRNA-1 |
| tig0041156 | CDS | 4582 | 5177 | 4582 | ID=Msa1460940-mRNA-1:cds;Parent=Msa1460940-mRNA-1 |
| tig0041156 | CDS | 6690 | 7143 | 6690 | ID=Msa1460940-mRNA-1:cds;Parent=Msa1460940-mRNA-1 |
| tig0041156 | CDS | 7235 | 7365 | 7235 | ID=Msa1460940-mRNA-1:cds;Parent=Msa1460940-mRNA-1 |
| tig0041156 | CDS | 7531 | 7879 | 7531 | ID=Msa1460940-mRNA-1:cds;Parent=Msa1460940-mRNA-1 |
| tig0041156 | CDS | 8203 | 8488 | 8203 | ID=Msa1460940-mRNA-1:cds;Parent=Msa1460940-mRNA-1 |
| tig0041156 | CDS | 8575 | 8861 | 8575 | ID=Msa1460940-mRNA-1:cds;Parent=Msa1460940-mRNA-1 |
| Gene Sequence |
| Protein sequence |
