AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1462030


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1462030 MtrunA17_Chr6g0484111 94.118 289 15 1 1 287 110 398 0.0 568
Msa1462030 MtrunA17_Chr6g0484131 93.426 289 17 1 1 287 110 398 0.0 559
Msa1462030 MtrunA17_Chr6g0484121 92.734 289 19 1 1 287 110 398 0.0 555
Msa1462030 MtrunA17_Chr8g0391211 71.379 290 78 4 1 287 180 467 7.13e-148 426
Msa1462030 MtrunA17_Chr8g0391221 70.345 290 81 4 1 287 109 396 2.25e-146 419
Msa1462030 MtrunA17_Chr4g0072691 50.362 276 128 5 7 276 86 358 2.78e-90 280
Msa1462030 MtrunA17_Chr4g0048161 47.163 282 140 5 7 281 118 397 2.55e-82 259
Msa1462030 MtrunA17_Chr2g0281171 46.099 282 143 5 7 281 119 398 7.12e-82 258
Msa1462030 MtrunA17_Chr2g0304831 47.687 281 135 6 7 279 117 393 4.13e-81 256
Msa1462030 MtrunA17_Chr4g0059411 50.237 211 100 4 1 209 99 306 3.45e-65 213
Msa1462030 MtrunA17_Chr7g0271691 36.458 288 171 7 1 284 101 380 5.21e-47 164
Msa1462030 MtrunA17_Chr7g0271681 35.424 271 160 8 9 270 34 298 6.74e-40 145
Msa1462030 MtrunA17_Chr7g0271671 34.672 274 165 9 9 274 125 392 2.43e-37 139
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1462030 AT1G73805.1 56.207 290 114 6 1 287 106 385 3.76e-106 316
Msa1462030 AT5G57580.1 48.727 275 134 4 7 276 116 388 4.86e-85 268
Msa1462030 AT4G25800.1 46.429 280 143 4 2 276 100 377 7.06e-82 258
Msa1462030 AT4G25800.2 46.429 280 143 4 2 276 100 377 7.06e-82 258
Msa1462030 AT2G18750.3 45.588 272 143 4 7 275 120 389 1.76e-80 255
Msa1462030 AT2G18750.2 45.588 272 143 4 7 275 120 389 1.76e-80 255
Msa1462030 AT2G18750.1 45.588 272 143 4 7 275 120 389 1.76e-80 255
Msa1462030 AT2G24300.1 45.290 276 144 4 8 278 65 338 6.76e-74 236
Msa1462030 AT2G24300.3 45.290 276 144 4 8 278 116 389 1.59e-73 236
Msa1462030 AT2G24300.2 45.290 276 144 4 8 278 112 385 1.87e-73 236
Msa1462030 AT4G31000.1 44.765 277 142 5 7 278 115 385 9.28e-73 233
Msa1462030 AT5G62570.4 42.205 263 141 6 1 257 102 359 3.10e-67 214
Msa1462030 AT5G62570.1 40.569 281 156 6 1 275 102 377 5.21e-67 217
Msa1462030 AT5G62570.2 40.569 281 156 6 1 275 87 362 5.91e-67 216
Msa1462030 AT4G31000.2 40.794 277 137 6 7 278 110 364 1.01e-60 201
Msa1462030 AT5G26920.3 37.722 281 154 7 1 275 102 367 1.13e-58 193
Msa1462030 AT5G26920.1 37.722 281 154 7 1 275 102 367 1.66e-57 193
Msa1462030 AT5G26920.2 37.367 281 147 8 1 275 102 359 4.98e-54 184
Msa1462030 AT5G62570.3 46.597 191 96 4 1 189 102 288 4.65e-51 170

Find 71 sgRNAs with CRISPR-Local

Find 220 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCAACAAGACTTATGCTTAT+AGG 0.200523 tig0041859:+3318 Msa1462030:intergenic
GGATAAAGTGCAGGAAGTTT+AGG 0.251346 tig0041859:-3053 Msa1462030:CDS
GAAGACTTGTTGGAACAATT+TGG 0.268874 tig0041859:+3280 Msa1462030:intergenic
GGGAAGAGACCATTACTTTC+TGG 0.273521 tig0041859:-3147 Msa1462030:CDS
GCTTTAATTAATTTGCATAT+TGG 0.279068 tig0041859:+415 Msa1462030:intergenic
ACCACAATCTCTAGCTTTAT+AGG 0.281295 tig0041859:+3252 Msa1462030:intergenic
TTGGAGAAGCATACACAAAA+TGG 0.297191 tig0041859:-185 Msa1462030:CDS
GTAGAGCTATATAGACAAAT+TGG 0.314437 tig0041859:-208 Msa1462030:intron
TATATTGTACCTTGTTCATT+TGG 0.318312 tig0041859:+350 Msa1462030:intergenic
CACATGATGAAAACGAGAAT+TGG 0.319514 tig0041859:-3212 Msa1462030:CDS
GATAAAGTGCAGGAAGTTTA+GGG 0.344313 tig0041859:-3052 Msa1462030:CDS
ACATGGGGAGCAAGATTTAT+AGG 0.357699 tig0041859:-471 Msa1462030:CDS
CTAGAGATTGTGGTACTTGA+TGG 0.361616 tig0041859:-3243 Msa1462030:CDS
GACTGAGGCATTTGTTGTTA+AGG 0.376185 tig0041859:-2974 Msa1462030:CDS
CCACAATCTCTAGCTTTATA+GGG 0.385020 tig0041859:+3253 Msa1462030:intergenic
ATATATACCTCTCTTAGCTT+TGG 0.385685 tig0041859:+1075 Msa1462030:intergenic
ATAGGGTAAGGAAGACTTGT+TGG 0.390458 tig0041859:+3270 Msa1462030:intergenic
GAAGTTTAGGGTTGCAGTTA+AGG 0.391787 tig0041859:-3040 Msa1462030:CDS
AGAGGTGGAATTGCACCAAT+TGG 0.409164 tig0041859:-3105 Msa1462030:CDS
GTGTGGCGCCTAGAGAAGAT+AGG 0.412903 tig0041859:-1183 Msa1462030:CDS
TACATAGTGAAGGAAAGAAC+TGG 0.419237 tig0041859:-3168 Msa1462030:intron
GAGGTGGAATTGCACCAATT+GGG 0.439927 tig0041859:-3104 Msa1462030:CDS
CATCTTTCCCTATCTTCTCT+AGG 0.450984 tig0041859:+1175 Msa1462030:intergenic
ATGGGAGTAATCAAAGTGTT+AGG 0.455811 tig0041859:-3011 Msa1462030:CDS
ATCTCTAGCTTTATAGGGTA+AGG 0.456668 tig0041859:+3258 Msa1462030:intergenic
TTAATTAAAGCTAATATCAA+TGG 0.468078 tig0041859:-403 Msa1462030:CDS
CACAAAATGGGATGAGTTGG+AGG 0.470432 tig0041859:-172 Msa1462030:CDS
GCATATTGGATTCAGAAGAA+TGG 0.478493 tig0041859:+429 Msa1462030:intergenic
GATGAGTTGGAGGAAATTGA+TGG 0.483767 tig0041859:-162 Msa1462030:CDS
CAATTCCACCTCTCATAGTA+AGG 0.486241 tig0041859:+3115 Msa1462030:intergenic
TTGGCTCAAGTACTCTCTGC+TGG 0.488877 tig0041859:+369 Msa1462030:intergenic
CCACCACAAAATGATGGCTA+AGG 0.503068 tig0041859:-1145 Msa1462030:CDS
TGGAGAAGCATACACAAAAT+GGG 0.514297 tig0041859:-184 Msa1462030:CDS
CACACATCATCGCCAAGCAT+TGG 0.517632 tig0041859:+1201 Msa1462030:intergenic
AAACACCATCCACCAATGCT+TGG 0.521377 tig0041859:-1213 Msa1462030:CDS
CCCTATAAAGCTAGAGATTG+TGG 0.525360 tig0041859:-3253 Msa1462030:CDS
AACATTGCTTTGTTAACCCA+AGG 0.527734 tig0041859:-126 None:intergenic
ATTCTAGCTGGATAAAGTGC+AGG 0.537572 tig0041859:-3062 Msa1462030:CDS
GTGAACTCTATGTCCCCAAT+TGG 0.542652 tig0041859:+3090 Msa1462030:intergenic
CACCACAAAATGATGGCTAA+GGG 0.548210 tig0041859:-1144 Msa1462030:CDS
AGCTATATAGACAAATTGGT+TGG 0.548813 tig0041859:-204 Msa1462030:CDS
AGTTCACAGATAATTCTAGC+TGG 0.556731 tig0041859:-3074 Msa1462030:CDS
ACATCATCGCCAAGCATTGG+TGG 0.557359 tig0041859:+1204 Msa1462030:intergenic
ATACACAAAATGGGATGAGT+TGG 0.560256 tig0041859:-175 Msa1462030:CDS
TTCAGAAGAATGGTAAATTG+AGG 0.561852 tig0041859:+439 Msa1462030:intergenic
GTTGCAGTTAAGGTGAGTCA+TGG 0.564275 tig0041859:-3030 Msa1462030:CDS
CATCGCCAAGCATTGGTGGA+TGG 0.571915 tig0041859:+1208 Msa1462030:intergenic
CTAGAGAAGATAGGGAAAGA+TGG 0.572158 tig0041859:-1174 Msa1462030:CDS
ATGAGTTGGAGGAAATTGAT+GGG 0.572531 tig0041859:-161 Msa1462030:CDS
TTCAATTCTCCAGAAAGTAA+TGG 0.573973 tig0041859:+3138 Msa1462030:intergenic
AGTAGAATACTTGACATTGA+AGG 0.580462 tig0041859:-3345 Msa1462030:CDS
AGGTGGAATTGCACCAATTG+GGG 0.581694 tig0041859:-3103 Msa1462030:CDS
CAAAGTGTTAGGATTCAAGA+AGG 0.583699 tig0041859:-3000 Msa1462030:CDS
TGTGGCGCCTAGAGAAGATA+GGG 0.589096 tig0041859:-1182 Msa1462030:CDS
AGCTTTCCACCACAAAATGA+TGG 0.589747 tig0041859:-1151 Msa1462030:CDS
CAATGCTTGGCGATGATGTG+TGG 0.590954 tig0041859:-1200 Msa1462030:CDS
TTGCAGTTAAGGTGAGTCAT+GGG 0.592429 tig0041859:-3029 Msa1462030:CDS
GAATTGAACCTTACTATGAG+AGG 0.607156 tig0041859:-3123 Msa1462030:CDS
TGAGTTGGAGGAAATTGATG+GGG 0.615793 tig0041859:-160 Msa1462030:CDS
TTGAACCTTACTATGAGAGG+TGG 0.618381 tig0041859:-3120 Msa1462030:CDS
GCATGCAATGACTTGTGACA+TGG 0.626229 tig0041859:-488 Msa1462030:CDS
ACATAGTGAAGGAAAGAACT+GGG 0.634050 tig0041859:-3167 Msa1462030:intron
AGCAAGATTTATAGGTACAG+TGG 0.636654 tig0041859:-463 Msa1462030:CDS
GTACTTGAGCCAAATGAACA+AGG 0.651863 tig0041859:-359 Msa1462030:intron
ACCACAAAATGATGGCTAAG+GGG 0.658660 tig0041859:-1143 Msa1462030:CDS
TGATACTCCAAAGCTAAGAG+AGG 0.665341 tig0041859:-1082 Msa1462030:intron
CATGCAATGACTTGTGACAT+GGG 0.667953 tig0041859:-487 Msa1462030:CDS
TGGGGATGTCTGATAGAATG+TGG 0.679640 tig0041859:-525 Msa1462030:CDS
TTTGTTGTTAAGGATCATCG+TGG 0.682651 tig0041859:-2964 Msa1462030:CDS
GATTCAAGAAGGCATGACTG+AGG 0.696401 tig0041859:-2989 Msa1462030:CDS
ATGCAATGACTTGTGACATG+GGG 0.729736 tig0041859:-486 Msa1462030:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTTTAATAAAATTAA+CGG + tig0041859:1000-1019 Msa1462030:intergenic 0.0%
!! CATCTAATTAATATATTTAA+GGG + tig0041859:721-740 Msa1462030:intergenic 10.0%
!!! AACTAAAAAATGAATTATTT+TGG - tig0041859:937-956 Msa1462030:intron 10.0%
!!! TTTTATTAAAAAAAAAGGTT+AGG - tig0041859:1004-1023 Msa1462030:intron 10.0%
!! TTTATTAAAAAAAAAGGTTA+GGG - tig0041859:1005-1024 Msa1462030:intron 10.0%
!! AATTTAATTAAAAAACGTTA+GGG + tig0041859:1938-1957 Msa1462030:intergenic 10.0%
!! AAATTTAATTAAAAAACGTT+AGG + tig0041859:1939-1958 Msa1462030:intergenic 10.0%
!!! CGTTTTTTAATTAAATTTAA+CGG - tig0041859:1941-1960 Msa1462030:intron 10.0%
!!! AACTAAAAAATGAATTATTT+TGG + tig0041859:937-956 Msa1462030:intergenic 10.0%
!! ATTATCATAATTCATAAACT+TGG - tig0041859:546-565 Msa1462030:intron 15.0%
!! CCATCTAATTAATATATTTA+AGG + tig0041859:722-741 Msa1462030:intergenic 15.0%
!! CCTTAAATATATTAATTAGA+TGG - tig0041859:719-738 Msa1462030:intron 15.0%
!! TTTGTCAAAAAAAAAAAGTT+GGG + tig0041859:746-765 Msa1462030:intergenic 15.0%
!! TTATATTTAGTATTTACACA+AGG - tig0041859:815-834 Msa1462030:intron 15.0%
!! TCTAACTATTTATTTAGTAT+CGG - tig0041859:903-922 Msa1462030:intron 15.0%
!!! ATAATTCATTTTTTAGTTAG+AGG + tig0041859:2038-2057 Msa1462030:intergenic 15.0%
!!! TTTTAATAAAATTAACGGAA+AGG + tig0041859:995-1014 Msa1462030:intergenic 15.0%
!! TTTGCAAAAAAATGAAAAAA+GGG - tig0041859:1536-1555 Msa1462030:intron 15.0%
!!! TTGTTTTTGTAAAATTAGAA+AGG - tig0041859:1664-1683 Msa1462030:intron 15.0%
!!! TGTTTTTGTAAAATTAGAAA+GGG - tig0041859:1665-1684 Msa1462030:intron 15.0%
!! TTTAATTAAATTTAACGGAA+AGG - tig0041859:1946-1965 Msa1462030:intron 15.0%
!!! ATAATTCATTTTTTAGTTAG+AGG - tig0041859:2038-2057 Msa1462030:intron 15.0%
!! TCTAACTATTTATTTAGTAT+CGG + tig0041859:903-922 Msa1462030:intergenic 15.0%
!!! ATAAATATTTTTGCATGTTA+AGG - tig0041859:2155-2174 Msa1462030:intron 15.0%
!! AGGTATATATCTTTATAATT+AGG - tig0041859:2411-2430 Msa1462030:intron 15.0%
!! GGTATATATCTTTATAATTA+GGG - tig0041859:2412-2431 Msa1462030:intron 15.0%
!! GTATATATCTTTATAATTAG+GGG - tig0041859:2413-2432 Msa1462030:intron 15.0%
!! TTAATTAAAGCTAATATCAA+TGG - tig0041859:3070-3089 Msa1462030:CDS 15.0%
!! CATAAACTTGGTATAATATA+AGG - tig0041859:558-577 Msa1462030:intron 20.0%
!!! CATGACTTAATTTTTTGTTT+AGG - tig0041859:600-619 Msa1462030:intron 20.0%
!! GATATTATTGCAATATAGAT+TGG - tig0041859:625-644 Msa1462030:intron 20.0%
!! TTGTCAAAAAAAAAAAGTTG+GGG + tig0041859:745-764 Msa1462030:intergenic 20.0%
!! CTTTGTCAAAAAAAAAAAGT+TGG + tig0041859:747-766 Msa1462030:intergenic 20.0%
!!! CTTTTTTTTTTTGACAAAGA+TGG - tig0041859:748-767 Msa1462030:intron 20.0%
!! GATACTAAATAAATAGTTAG+AGG + tig0041859:2069-2088 Msa1462030:intergenic 20.0%
!!! TTTTAGGGATTTGAAAAATT+GGG + tig0041859:1413-1432 Msa1462030:intergenic 20.0%
!!! ATTTTAGGGATTTGAAAAAT+TGG + tig0041859:1414-1433 Msa1462030:intergenic 20.0%
!!! AATTTTACAAGAGAAATTTG+GGG + tig0041859:1445-1464 Msa1462030:intergenic 20.0%
!!! GAATTTTACAAGAGAAATTT+GGG + tig0041859:1446-1465 Msa1462030:intergenic 20.0%
!! CTTTGCAAAAAAATGAAAAA+AGG - tig0041859:1535-1554 Msa1462030:intron 20.0%
!! AAATTTGAAAAAATCCAGAT+TGG + tig0041859:1834-1853 Msa1462030:intergenic 20.0%
!!! AAATTTTGTTTTTGATTGCT+GGG - tig0041859:1848-1867 Msa1462030:intron 20.0%
!!! CTTTCTCTTTTGAATTATTT+TGG + tig0041859:2005-2024 Msa1462030:intergenic 20.0%
!! TAATTCAAAAGAGAAAGTTA+AGG - tig0041859:2008-2027 Msa1462030:intron 20.0%
!! AATTCAAAAGAGAAAGTTAA+GGG - tig0041859:2009-2028 Msa1462030:intron 20.0%
!! GATACTAAATAAATAGTTAG+AGG - tig0041859:2069-2088 Msa1462030:intron 20.0%
!!! TACATCAAAGTATTTAAAGT+AGG + tig0041859:2113-2132 Msa1462030:intergenic 20.0%
!!! TCTTTATGCTAATTTTGTTT+AGG - tig0041859:2475-2494 Msa1462030:intron 20.0%
!! AAGAAATTGATCTTGTATAA+TGG + tig0041859:2594-2613 Msa1462030:intergenic 20.0%
!!! TAAGTTTAAGTTCAAATTTG+AGG + tig0041859:2634-2653 Msa1462030:intergenic 20.0%
!!! ATTTATCTGAAATCAGATTT+TGG - tig0041859:2922-2941 Msa1462030:intron 20.0%
!!! TTTATCTGAAATCAGATTTT+GGG - tig0041859:2923-2942 Msa1462030:intron 20.0%
!!! GCTTTAATTAATTTGCATAT+TGG + tig0041859:3061-3080 Msa1462030:intergenic 20.0%
!! TTACATTATATGCTAGATAT+TGG - tig0041859:3199-3218 Msa1462030:CDS 20.0%
! ATTCAACAAATACATAGTGA+AGG - tig0041859:295-314 Msa1462030:intron 25.0%
! TACTTATTTCCAACTAACTT+TGG - tig0041859:673-692 Msa1462030:intron 25.0%
! AAAAAAAGACCAAAGTTAGT+TGG + tig0041859:685-704 Msa1462030:intergenic 25.0%
! TTAGTATTTACACAAGGAAA+TGG - tig0041859:821-840 Msa1462030:intron 25.0%
!!! CTTTTTGTGACACTTTTTTT+AGG + tig0041859:849-868 Msa1462030:intergenic 25.0%
! CACAAAAAGTAGTACTTTAA+AGG - tig0041859:860-879 Msa1462030:intron 25.0%
!!! CTATTTATTTAGTATCGGTT+TGG - tig0041859:908-927 Msa1462030:intron 25.0%
! ATTTATTCAGATGAAGAGAA+GGG + tig0041859:1235-1254 Msa1462030:intergenic 25.0%
! AATTTATTCAGATGAAGAGA+AGG + tig0041859:1236-1255 Msa1462030:intergenic 25.0%
! TTCTCTTCATCTGAATAAAT+TGG - tig0041859:1235-1254 Msa1462030:intron 25.0%
! ATTTGAAAAATTGGGATTTG+AGG + tig0041859:1405-1424 Msa1462030:intergenic 25.0%
!! CGAATTTTACAAGAGAAATT+TGG + tig0041859:1447-1466 Msa1462030:intergenic 25.0%
! TTCTCTTGTAAAATTCGAAT+TGG - tig0041859:1450-1469 Msa1462030:intron 25.0%
!!! TTTTTTTGCAAAGAAGAAGA+AGG + tig0041859:1528-1547 Msa1462030:intergenic 25.0%
! TTGTAAAATTAGAAAGGGTT+AGG - tig0041859:1670-1689 Msa1462030:intron 25.0%
! TGTAAAATTAGAAAGGGTTA+GGG - tig0041859:1671-1690 Msa1462030:intron 25.0%
! ATGTTGTTGCTAATTTATGA+AGG - tig0041859:1723-1742 Msa1462030:intron 25.0%
!!! CAAATTTTGTTTTTGATTGC+TGG - tig0041859:1847-1866 Msa1462030:intron 25.0%
!!! TATTTTCTTGTTGCTATTGA+TGG - tig0041859:1892-1911 Msa1462030:intron 25.0%
!!! CTATTTATTTAGTATCGGTT+TGG + tig0041859:908-927 Msa1462030:intergenic 25.0%
! TATATTGTACCTTGTTCATT+TGG + tig0041859:3126-3145 Msa1462030:intergenic 25.0%
!!! GTCCTCTAATTCATTTTAAT+TGG - tig0041859:3221-3240 Msa1462030:CDS 25.0%
! CACCAATTAAAATGAATTAG+AGG + tig0041859:3226-3245 Msa1462030:intergenic 25.0%
!! CTATATAGCTCTACAAATTT+AGG + tig0041859:3259-3278 Msa1462030:intergenic 25.0%
AGTAGAATACTTGACATTGA+AGG - tig0041859:128-147 Msa1462030:CDS 30.0%
TCAACAAGACTTATGCTTAT+AGG + tig0041859:158-177 Msa1462030:intergenic 30.0%
TTCAATTCTCCAGAAAGTAA+TGG + tig0041859:338-357 Msa1462030:intergenic 30.0%
AAAACTACAACAACAGAAGT+GGG + tig0041859:776-795 Msa1462030:intergenic 30.0%
TTGTTGTGTAGTTTATGGAA+AGG + tig0041859:1180-1199 Msa1462030:intergenic 30.0%
! AGTTGTTGTTGTGTAGTTTA+TGG + tig0041859:1185-1204 Msa1462030:intergenic 30.0%
CTATTCTTCTTCTTTGAACA+GGG - tig0041859:1488-1507 Msa1462030:intron 30.0%
TATTCTTCTTCTTTGAACAG+GGG - tig0041859:1489-1508 Msa1462030:intron 30.0%
TCTCACAAGAAAATCAATCT+GGG + tig0041859:1580-1599 Msa1462030:intergenic 30.0%
ATCTCACAAGAAAATCAATC+TGG + tig0041859:1581-1600 Msa1462030:intergenic 30.0%
TTGTTGCTAATTTATGAAGG+AGG - tig0041859:1726-1745 Msa1462030:intron 30.0%
ATATATACCTCTCTTAGCTT+TGG + tig0041859:2401-2420 Msa1462030:intergenic 30.0%
TTAGCATAAAGATAGACTCT+AGG + tig0041859:2467-2486 Msa1462030:intergenic 30.0%
ATGCTAATTGCACATGTTAA+AGG + tig0041859:2831-2850 Msa1462030:intergenic 30.0%
TTCAGAAGAATGGTAAATTG+AGG + tig0041859:3037-3056 Msa1462030:intergenic 30.0%
AGCATATAATGTAATCCACA+AGG + tig0041859:3193-3212 Msa1462030:intergenic 30.0%
! TAGCTCTACAAATTTAGGAA+TGG + tig0041859:3254-3273 Msa1462030:intergenic 30.0%
GTAGAGCTATATAGACAAAT+TGG - tig0041859:3265-3284 Msa1462030:CDS 30.0%
AGCTATATAGACAAATTGGT+TGG - tig0041859:3269-3288 Msa1462030:CDS 30.0%
!! GAAGACTTGTTGGAACAATT+TGG + tig0041859:196-215 Msa1462030:intergenic 35.0%
!! ATCTCTAGCTTTATAGGGTA+AGG + tig0041859:218-237 Msa1462030:intergenic 35.0%
!! CCACAATCTCTAGCTTTATA+GGG + tig0041859:223-242 Msa1462030:intergenic 35.0%
!! ACCACAATCTCTAGCTTTAT+AGG + tig0041859:224-243 Msa1462030:intergenic 35.0%
! CAATTCTCGTTTTCATCATG+TGG + tig0041859:263-282 Msa1462030:intergenic 35.0%
CACATGATGAAAACGAGAAT+TGG - tig0041859:261-280 Msa1462030:intron 35.0%
TACATAGTGAAGGAAAGAAC+TGG - tig0041859:305-324 Msa1462030:intron 35.0%
ACATAGTGAAGGAAAGAACT+GGG - tig0041859:306-325 Msa1462030:intron 35.0%
GAATTGAACCTTACTATGAG+AGG - tig0041859:350-369 Msa1462030:intron 35.0%
AGTTCACAGATAATTCTAGC+TGG - tig0041859:399-418 Msa1462030:CDS 35.0%
GATAAAGTGCAGGAAGTTTA+GGG - tig0041859:421-440 Msa1462030:CDS 35.0%
! ATGGGAGTAATCAAAGTGTT+AGG - tig0041859:462-481 Msa1462030:CDS 35.0%
! CAAAGTGTTAGGATTCAAGA+AGG - tig0041859:473-492 Msa1462030:CDS 35.0%
!! TTTGTTGTTAAGGATCATCG+TGG - tig0041859:509-528 Msa1462030:CDS 35.0%
AAACTACAACAACAGAAGTG+GGG + tig0041859:775-794 Msa1462030:intergenic 35.0%
CAAAACTACAACAACAGAAG+TGG + tig0041859:777-796 Msa1462030:intergenic 35.0%
GAAGAAAAGGATGAAGAGAA+GGG + tig0041859:1096-1115 Msa1462030:intergenic 35.0%
AGAAGAAAAGGATGAAGAGA+AGG + tig0041859:1097-1116 Msa1462030:intergenic 35.0%
GAGTGGAAAAGAAGAAGAAA+AGG + tig0041859:1109-1128 Msa1462030:intergenic 35.0%
! TGGATTGTTGTTGTTGTTGA+AGG + tig0041859:1131-1150 Msa1462030:intergenic 35.0%
! AGATTGATGTGTTGTTGTTG+TGG + tig0041859:1151-1170 Msa1462030:intergenic 35.0%
ATTTATGAAGGAGGAAGAGA+GGG + tig0041859:1735-1754 Msa1462030:intergenic 35.0%
TGAAGAGAAGGGATTTATGA+AGG + tig0041859:1224-1243 Msa1462030:intergenic 35.0%
AGAACGCAAGAAAGAAAGAA+AGG - tig0041859:1290-1309 Msa1462030:intron 35.0%
GAACGCAAGAAAGAAAGAAA+GGG - tig0041859:1291-1310 Msa1462030:intron 35.0%
AACGCAAGAAAGAAAGAAAG+GGG - tig0041859:1292-1311 Msa1462030:intron 35.0%
CGAATAGAATAAGCTGTTGA+AGG - tig0041859:1323-1342 Msa1462030:intron 35.0%
ATAGAATAAGCTGTTGAAGG+AGG - tig0041859:1326-1345 Msa1462030:intron 35.0%
! TTGGGGATTTGAGGATTTTA+GGG + tig0041859:1428-1447 Msa1462030:intergenic 35.0%
! TTTGGGGATTTGAGGATTTT+AGG + tig0041859:1429-1448 Msa1462030:intergenic 35.0%
AAGAGAAATTTGGGGATTTG+AGG + tig0041859:1437-1456 Msa1462030:intergenic 35.0%
CCTGTTCAAAGAAGAAGAAT+AGG + tig0041859:1490-1509 Msa1462030:intergenic 35.0%
CCTATTCTTCTTCTTTGAAC+AGG - tig0041859:1487-1506 Msa1462030:intron 35.0%
ATTCTTCTTCTTTGAACAGG+GGG - tig0041859:1490-1509 Msa1462030:intron 35.0%
GAGTTTCTTGTTCAGATTGA+TGG - tig0041859:1628-1647 Msa1462030:intron 35.0%
ATTAGAAAGGGTTAGGGATT+TGG - tig0041859:1677-1696 Msa1462030:intron 35.0%
AATTTATGAAGGAGGAAGAG+AGG - tig0041859:1734-1753 Msa1462030:intron 35.0%
ATTTATGAAGGAGGAAGAGA+GGG - tig0041859:1735-1754 Msa1462030:intron 35.0%
! TGTTGTTGTTGTTGTTGTTG+TGG - tig0041859:1765-1784 Msa1462030:intron 35.0%
! ATCCAGATTGGCTGTTAAAT+TGG + tig0041859:1822-1841 Msa1462030:intergenic 35.0%
GAAAGGACCAAAATGTGTAA+CGG - tig0041859:1963-1982 Msa1462030:intron 35.0%
! TTTCTCTCCGTTACACATTT+TGG + tig0041859:1973-1992 Msa1462030:intergenic 35.0%
! TGTAACGGAGAGAAAGTTAA+GGG - tig0041859:1978-1997 Msa1462030:intron 35.0%
! AAGATAGACTCTAGGAAATG+TGG + tig0041859:2459-2478 Msa1462030:intergenic 35.0%
! TGAAATCAGATTTTGGGCAT+GGG - tig0041859:2929-2948 Msa1462030:intron 35.0%
AGCAAGATTTATAGGTACAG+TGG - tig0041859:3010-3029 Msa1462030:CDS 35.0%
GCATATTGGATTCAGAAGAA+TGG + tig0041859:3047-3066 Msa1462030:intergenic 35.0%
! TGTAGTCTTACTTTACCTTG+TGG - tig0041859:3175-3194 Msa1462030:intron 35.0%
! TTGGAGAAGCATACACAAAA+TGG - tig0041859:3288-3307 Msa1462030:CDS 35.0%
! TGGAGAAGCATACACAAAAT+GGG - tig0041859:3289-3308 Msa1462030:CDS 35.0%
ATACACAAAATGGGATGAGT+TGG - tig0041859:3298-3317 Msa1462030:CDS 35.0%
! ATGAGTTGGAGGAAATTGAT+GGG - tig0041859:3312-3331 Msa1462030:CDS 35.0%
ATAGGGTAAGGAAGACTTGT+TGG + tig0041859:206-225 Msa1462030:intergenic 40.0%
CCCTATAAAGCTAGAGATTG+TGG - tig0041859:220-239 Msa1462030:intron 40.0%
CTAGAGATTGTGGTACTTGA+TGG - tig0041859:230-249 Msa1462030:intron 40.0%
TTGAACCTTACTATGAGAGG+TGG - tig0041859:353-372 Msa1462030:intron 40.0%
CAATTCCACCTCTCATAGTA+AGG + tig0041859:361-380 Msa1462030:intergenic 40.0%
! ATTCTAGCTGGATAAAGTGC+AGG - tig0041859:411-430 Msa1462030:CDS 40.0%
GGATAAAGTGCAGGAAGTTT+AGG - tig0041859:420-439 Msa1462030:CDS 40.0%
! GAAGTTTAGGGTTGCAGTTA+AGG - tig0041859:433-452 Msa1462030:CDS 40.0%
TTGCAGTTAAGGTGAGTCAT+GGG - tig0041859:444-463 Msa1462030:CDS 40.0%
!! GACTGAGGCATTTGTTGTTA+AGG - tig0041859:499-518 Msa1462030:CDS 40.0%
CAGTAACGTGACAAAGTTAG+AGG + tig0041859:964-983 Msa1462030:intergenic 40.0%
GAAGGAGGAAAAGAAGGATA+CGG + tig0041859:1074-1093 Msa1462030:intergenic 40.0%
AAAAGGATGAAGAGAAGGGA+AGG + tig0041859:1092-1111 Msa1462030:intergenic 40.0%
! TGTTGTTGTTGTTGAAGGAG+TGG + tig0041859:1126-1145 Msa1462030:intergenic 40.0%
GATTTATGAAGGAGGAAGAG+AGG + tig0041859:1213-1232 Msa1462030:intergenic 40.0%
AGAGAAGGGATTTATGAAGG+AGG + tig0041859:1221-1240 Msa1462030:intergenic 40.0%
AGAAAGAAAGAAAGGGGTAG+AGG - tig0041859:1298-1317 Msa1462030:intron 40.0%
AAAGGGTTAGGGATTTGGAA+AGG - tig0041859:1682-1701 Msa1462030:intron 40.0%
AAGGGTTAGGGATTTGGAAA+GGG - tig0041859:1683-1702 Msa1462030:intron 40.0%
TTTGGAAAGGGAAGAAGAAG+AGG - tig0041859:1695-1714 Msa1462030:intron 40.0%
AGCCAATTTAACAGCCAATC+TGG - tig0041859:1817-1836 Msa1462030:intron 40.0%
TGGGTTTGTGTATGAGTTTC+TGG - tig0041859:1867-1886 Msa1462030:intron 40.0%
GGGTTTGTGTATGAGTTTCT+GGG - tig0041859:1868-1887 Msa1462030:intron 40.0%
! GTGTAACGGAGAGAAAGTTA+AGG - tig0041859:1977-1996 Msa1462030:intron 40.0%
CATCTTTCCCTATCTTCTCT+AGG + tig0041859:2301-2320 Msa1462030:intergenic 40.0%
CTAGAGAAGATAGGGAAAGA+TGG - tig0041859:2299-2318 Msa1462030:intron 40.0%
AGCTTTCCACCACAAAATGA+TGG - tig0041859:2322-2341 Msa1462030:intron 40.0%
CACCACAAAATGATGGCTAA+GGG - tig0041859:2329-2348 Msa1462030:intron 40.0%
ACCACAAAATGATGGCTAAG+GGG - tig0041859:2330-2349 Msa1462030:intron 40.0%
TGATACTCCAAAGCTAAGAG+AGG - tig0041859:2391-2410 Msa1462030:intron 40.0%
! CTGAAATCAGATTTTGGGCA+TGG - tig0041859:2928-2947 Msa1462030:intron 40.0%
! GAAATCAGATTTTGGGCATG+GGG - tig0041859:2930-2949 Msa1462030:intron 40.0%
! CATGCAATGACTTGTGACAT+GGG - tig0041859:2986-3005 Msa1462030:CDS 40.0%
! ATGCAATGACTTGTGACATG+GGG - tig0041859:2987-3006 Msa1462030:CDS 40.0%
ACATGGGGAGCAAGATTTAT+AGG - tig0041859:3002-3021 Msa1462030:CDS 40.0%
GTACTTGAGCCAAATGAACA+AGG - tig0041859:3114-3133 Msa1462030:CDS 40.0%
TGTGAGTCTTGAGTAGTAGA+TGG + tig0041859:3153-3172 Msa1462030:intergenic 40.0%
! GATGAGTTGGAGGAAATTGA+TGG - tig0041859:3311-3330 Msa1462030:CDS 40.0%
! TGAGTTGGAGGAAATTGATG+GGG - tig0041859:3313-3332 Msa1462030:CDS 40.0%
GGGAAGAGACCATTACTTTC+TGG - tig0041859:326-345 Msa1462030:intron 45.0%
AGAGGTGGAATTGCACCAAT+TGG - tig0041859:368-387 Msa1462030:CDS 45.0%
GAGGTGGAATTGCACCAATT+GGG - tig0041859:369-388 Msa1462030:CDS 45.0%
AGGTGGAATTGCACCAATTG+GGG - tig0041859:370-389 Msa1462030:CDS 45.0%
GTGAACTCTATGTCCCCAAT+TGG + tig0041859:386-405 Msa1462030:intergenic 45.0%
GTTGCAGTTAAGGTGAGTCA+TGG - tig0041859:443-462 Msa1462030:CDS 45.0%
! GATTCAAGAAGGCATGACTG+AGG - tig0041859:484-503 Msa1462030:CDS 45.0%
TACGGTGGTAGCATGAAGAA+GGG + tig0041859:1056-1075 Msa1462030:intergenic 45.0%
ATACGGTGGTAGCATGAAGA+AGG + tig0041859:1057-1076 Msa1462030:intergenic 45.0%
AGAAGGGAAGGAGGAAAAGA+AGG + tig0041859:1080-1099 Msa1462030:intergenic 45.0%
TCATCTCACGCAACTACAAC+TGG - tig0041859:1362-1381 Msa1462030:intron 45.0%
AAACACCATCCACCAATGCT+TGG - tig0041859:2260-2279 Msa1462030:intron 45.0%
! CCTTAGCCATCATTTTGTGG+TGG + tig0041859:2331-2350 Msa1462030:intergenic 45.0%
CCACCACAAAATGATGGCTA+AGG - tig0041859:2328-2347 Msa1462030:intron 45.0%
! TCCCCTTAGCCATCATTTTG+TGG + tig0041859:2334-2353 Msa1462030:intergenic 45.0%
TGGGGATGTCTGATAGAATG+TGG - tig0041859:2948-2967 Msa1462030:intron 45.0%
! GCATGCAATGACTTGTGACA+TGG - tig0041859:2985-3004 Msa1462030:CDS 45.0%
! CACAAAATGGGATGAGTTGG+AGG - tig0041859:3301-3320 Msa1462030:CDS 45.0%
!!! GTTAATTTTATTAAAAAAAA+AGG - tig0041859:999-1018 Msa1462030:intron 5.0%
!! AATCTAATATATTTAATTAA+AGG + tig0041859:2857-2876 Msa1462030:intergenic 5.0%
ACGGTGGTAGCATGAAGAAG+GGG + tig0041859:1055-1074 Msa1462030:intergenic 50.0%
GGAGGAAAAGAAGGATACGG+TGG + tig0041859:1071-1090 Msa1462030:intergenic 50.0%
AGGATGAAGAGAAGGGAAGG+AGG + tig0041859:1089-1108 Msa1462030:intergenic 50.0%
GGAAAGGGAAGAAGAAGAGG+AGG - tig0041859:1698-1717 Msa1462030:intron 50.0%
!! ACATCATCGCCAAGCATTGG+TGG + tig0041859:2272-2291 Msa1462030:intergenic 50.0%
CACACATCATCGCCAAGCAT+TGG + tig0041859:2275-2294 Msa1462030:intergenic 50.0%
CAATGCTTGGCGATGATGTG+TGG - tig0041859:2273-2292 Msa1462030:intron 50.0%
TGTGGCGCCTAGAGAAGATA+GGG - tig0041859:2291-2310 Msa1462030:intron 50.0%
TTGGCTCAAGTACTCTCTGC+TGG + tig0041859:3107-3126 Msa1462030:intergenic 50.0%
CGGTGGTAGCATGAAGAAGG+GGG + tig0041859:1054-1073 Msa1462030:intergenic 55.0%
!! CATCGCCAAGCATTGGTGGA+TGG + tig0041859:2268-2287 Msa1462030:intergenic 55.0%
GTGTGGCGCCTAGAGAAGAT+AGG - tig0041859:2290-2309 Msa1462030:intron 55.0%
Chromosome Type Strat End Strand Name
tig0041859 gene 128 3367 128 ID=Msa1462030;Name=Msa1462030
tig0041859 mRNA 128 3367 128 ID=Msa1462030-mRNA-1;Parent=Msa1462030;Name=Msa1462030-mRNA-1;_AED=0.17;_eAED=0.17;_QI=0|0.75|0.4|1|0.75|0.6|5|0|287
tig0041859 exon 3185 3367 3185 ID=Msa1462030-mRNA-1:exon:23464;Parent=Msa1462030-mRNA-1
tig0041859 exon 2959 3178 2959 ID=Msa1462030-mRNA-1:exon:23463;Parent=Msa1462030-mRNA-1
tig0041859 exon 1083 1243 1083 ID=Msa1462030-mRNA-1:exon:23462;Parent=Msa1462030-mRNA-1
tig0041859 exon 360 557 360 ID=Msa1462030-mRNA-1:exon:23461;Parent=Msa1462030-mRNA-1
tig0041859 exon 128 226 128 ID=Msa1462030-mRNA-1:exon:23460;Parent=Msa1462030-mRNA-1
tig0041859 CDS 3185 3367 3185 ID=Msa1462030-mRNA-1:cds;Parent=Msa1462030-mRNA-1
tig0041859 CDS 2959 3178 2959 ID=Msa1462030-mRNA-1:cds;Parent=Msa1462030-mRNA-1
tig0041859 CDS 1083 1243 1083 ID=Msa1462030-mRNA-1:cds;Parent=Msa1462030-mRNA-1
tig0041859 CDS 360 557 360 ID=Msa1462030-mRNA-1:cds;Parent=Msa1462030-mRNA-1
tig0041859 CDS 128 226 128 ID=Msa1462030-mRNA-1:cds;Parent=Msa1462030-mRNA-1
Gene Sequence

>Msa1462030

AGTAGAATACTTGACATTGAAGGTAAACCTATAAGCATAAGTCTTGTTGACAAAACAAACAATAACCAAATTGTTCCAACAAGTCTTCCTTACCCTATAAAGCTAGAGATTGTGGTACTTGATGGAGATTTTCCACATGATGAAAACGAGAATTGGACTAGTGAAGAATTCAACAAATACATAGAAAGAACTGGGAAGAGACCATTACTTTCTGGAGAATTGAACCTTACTATGAGAGGTGGAATTGCACCAATTGGGGACATAGAGTTCACAGATAATTCTAGCTGGATAAAGTGCAGGAAGTTTAGGGTTGCAGTTAAGGTGAGTCATGGGAGTAATCAAAGTGTTAGGATTCAAGAAGGCATGACTGAGGCATTTGTTGTTAAGGATCATCGTGGAGAATTGTACAAAAAACACCATCCACCAATGCTTGGCGATGATGTGTGGCGCCTAGAGAAGATAGGGAAAGATGGAGCTTTCCACCACAAAATGATGGCTAAGGGGATCAAAACAGTGCAAGACTTTCTTAAATTAGCAGTTATTGATACTCCAAAGCTAAGAGAGATTTTGGGCATGGGGATGTCTGATAGAATGTGGAAAGTCACAATAAAGCATGCAATGACTTGTGACATGGGGAGCAAGATTTATAGGTACAGTGGACCTCAATTTACCATTCTTCTGAATCCAATATGCAAATTAATTAAAGCTAATATCAATGGACAAGAATTTTCCAGCAGAGAGTACTTGAGCCAAATGAACAAGAGCTATATAGACAAATTGGTTGGAGAAGCATACACAAAATGGGATGAGTTGGAGGAAATTGATGGGGTTTTAAATGATAACATTGCTTTGTTAACCCAA

Protein sequence

>Msa1462030

SRILDIEGKPISISLVDKTNNNQIVPTSLPYPIKLEIVVLDGDFPHDENENWTSEEFNKYIERTGKRPLLSGELNLTMRGGIAPIGDIEFTDNSSWIKCRKFRVAVKVSHGSNQSVRIQEGMTEAFVVKDHRGELYKKHHPPMLGDDVWRLEKIGKDGAFHHKMMAKGIKTVQDFLKLAVIDTPKLREILGMGMSDRMWKVTIKHAMTCDMGSKIYRYSGPQFTILLNPICKLIKANINGQEFSSREYLSQMNKSYIDKLVGEAYTKWDELEEIDGVLNDNIALLTQ