Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1462030 | XP_039683138.1 | 94.118 | 289 | 15 | 1 | 1 | 287 | 110 | 398 | 0.0 | 568 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1462030 | sp|Q9C9T2|SARD1_ARATH | 56.207 | 290 | 114 | 6 | 1 | 287 | 106 | 385 | 3.70e-105 | 316 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1462030 | A0A396HLL0 | 94.118 | 289 | 15 | 1 | 1 | 287 | 110 | 398 | 0.0 | 568 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0679550 | Msa1462030 | 0.804969 | 1.673851e-49 | -8.615850e-47 |
Msa0188050 | Msa1462030 | 0.802994 | 4.307221e-49 | -8.615850e-47 |
Msa0998460 | Msa1462030 | 0.803304 | 3.716075e-49 | -8.615850e-47 |
Msa0525610 | Msa1462030 | 0.802872 | 4.564599e-49 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1462030 | MtrunA17_Chr6g0484111 | 94.118 | 289 | 15 | 1 | 1 | 287 | 110 | 398 | 0.0 | 568 |
Msa1462030 | MtrunA17_Chr6g0484131 | 93.426 | 289 | 17 | 1 | 1 | 287 | 110 | 398 | 0.0 | 559 |
Msa1462030 | MtrunA17_Chr6g0484121 | 92.734 | 289 | 19 | 1 | 1 | 287 | 110 | 398 | 0.0 | 555 |
Msa1462030 | MtrunA17_Chr8g0391211 | 71.379 | 290 | 78 | 4 | 1 | 287 | 180 | 467 | 7.13e-148 | 426 |
Msa1462030 | MtrunA17_Chr8g0391221 | 70.345 | 290 | 81 | 4 | 1 | 287 | 109 | 396 | 2.25e-146 | 419 |
Msa1462030 | MtrunA17_Chr4g0072691 | 50.362 | 276 | 128 | 5 | 7 | 276 | 86 | 358 | 2.78e-90 | 280 |
Msa1462030 | MtrunA17_Chr4g0048161 | 47.163 | 282 | 140 | 5 | 7 | 281 | 118 | 397 | 2.55e-82 | 259 |
Msa1462030 | MtrunA17_Chr2g0281171 | 46.099 | 282 | 143 | 5 | 7 | 281 | 119 | 398 | 7.12e-82 | 258 |
Msa1462030 | MtrunA17_Chr2g0304831 | 47.687 | 281 | 135 | 6 | 7 | 279 | 117 | 393 | 4.13e-81 | 256 |
Msa1462030 | MtrunA17_Chr4g0059411 | 50.237 | 211 | 100 | 4 | 1 | 209 | 99 | 306 | 3.45e-65 | 213 |
Msa1462030 | MtrunA17_Chr7g0271691 | 36.458 | 288 | 171 | 7 | 1 | 284 | 101 | 380 | 5.21e-47 | 164 |
Msa1462030 | MtrunA17_Chr7g0271681 | 35.424 | 271 | 160 | 8 | 9 | 270 | 34 | 298 | 6.74e-40 | 145 |
Msa1462030 | MtrunA17_Chr7g0271671 | 34.672 | 274 | 165 | 9 | 9 | 274 | 125 | 392 | 2.43e-37 | 139 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1462030 | AT1G73805.1 | 56.207 | 290 | 114 | 6 | 1 | 287 | 106 | 385 | 3.76e-106 | 316 |
Msa1462030 | AT5G57580.1 | 48.727 | 275 | 134 | 4 | 7 | 276 | 116 | 388 | 4.86e-85 | 268 |
Msa1462030 | AT4G25800.1 | 46.429 | 280 | 143 | 4 | 2 | 276 | 100 | 377 | 7.06e-82 | 258 |
Msa1462030 | AT4G25800.2 | 46.429 | 280 | 143 | 4 | 2 | 276 | 100 | 377 | 7.06e-82 | 258 |
Msa1462030 | AT2G18750.3 | 45.588 | 272 | 143 | 4 | 7 | 275 | 120 | 389 | 1.76e-80 | 255 |
Msa1462030 | AT2G18750.2 | 45.588 | 272 | 143 | 4 | 7 | 275 | 120 | 389 | 1.76e-80 | 255 |
Msa1462030 | AT2G18750.1 | 45.588 | 272 | 143 | 4 | 7 | 275 | 120 | 389 | 1.76e-80 | 255 |
Msa1462030 | AT2G24300.1 | 45.290 | 276 | 144 | 4 | 8 | 278 | 65 | 338 | 6.76e-74 | 236 |
Msa1462030 | AT2G24300.3 | 45.290 | 276 | 144 | 4 | 8 | 278 | 116 | 389 | 1.59e-73 | 236 |
Msa1462030 | AT2G24300.2 | 45.290 | 276 | 144 | 4 | 8 | 278 | 112 | 385 | 1.87e-73 | 236 |
Msa1462030 | AT4G31000.1 | 44.765 | 277 | 142 | 5 | 7 | 278 | 115 | 385 | 9.28e-73 | 233 |
Msa1462030 | AT5G62570.4 | 42.205 | 263 | 141 | 6 | 1 | 257 | 102 | 359 | 3.10e-67 | 214 |
Msa1462030 | AT5G62570.1 | 40.569 | 281 | 156 | 6 | 1 | 275 | 102 | 377 | 5.21e-67 | 217 |
Msa1462030 | AT5G62570.2 | 40.569 | 281 | 156 | 6 | 1 | 275 | 87 | 362 | 5.91e-67 | 216 |
Msa1462030 | AT4G31000.2 | 40.794 | 277 | 137 | 6 | 7 | 278 | 110 | 364 | 1.01e-60 | 201 |
Msa1462030 | AT5G26920.3 | 37.722 | 281 | 154 | 7 | 1 | 275 | 102 | 367 | 1.13e-58 | 193 |
Msa1462030 | AT5G26920.1 | 37.722 | 281 | 154 | 7 | 1 | 275 | 102 | 367 | 1.66e-57 | 193 |
Msa1462030 | AT5G26920.2 | 37.367 | 281 | 147 | 8 | 1 | 275 | 102 | 359 | 4.98e-54 | 184 |
Msa1462030 | AT5G62570.3 | 46.597 | 191 | 96 | 4 | 1 | 189 | 102 | 288 | 4.65e-51 | 170 |
Find 71 sgRNAs with CRISPR-Local
Find 220 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TCAACAAGACTTATGCTTAT+AGG | 0.200523 | tig0041859:+3318 | Msa1462030:intergenic |
GGATAAAGTGCAGGAAGTTT+AGG | 0.251346 | tig0041859:-3053 | Msa1462030:CDS |
GAAGACTTGTTGGAACAATT+TGG | 0.268874 | tig0041859:+3280 | Msa1462030:intergenic |
GGGAAGAGACCATTACTTTC+TGG | 0.273521 | tig0041859:-3147 | Msa1462030:CDS |
GCTTTAATTAATTTGCATAT+TGG | 0.279068 | tig0041859:+415 | Msa1462030:intergenic |
ACCACAATCTCTAGCTTTAT+AGG | 0.281295 | tig0041859:+3252 | Msa1462030:intergenic |
TTGGAGAAGCATACACAAAA+TGG | 0.297191 | tig0041859:-185 | Msa1462030:CDS |
GTAGAGCTATATAGACAAAT+TGG | 0.314437 | tig0041859:-208 | Msa1462030:intron |
TATATTGTACCTTGTTCATT+TGG | 0.318312 | tig0041859:+350 | Msa1462030:intergenic |
CACATGATGAAAACGAGAAT+TGG | 0.319514 | tig0041859:-3212 | Msa1462030:CDS |
GATAAAGTGCAGGAAGTTTA+GGG | 0.344313 | tig0041859:-3052 | Msa1462030:CDS |
ACATGGGGAGCAAGATTTAT+AGG | 0.357699 | tig0041859:-471 | Msa1462030:CDS |
CTAGAGATTGTGGTACTTGA+TGG | 0.361616 | tig0041859:-3243 | Msa1462030:CDS |
GACTGAGGCATTTGTTGTTA+AGG | 0.376185 | tig0041859:-2974 | Msa1462030:CDS |
CCACAATCTCTAGCTTTATA+GGG | 0.385020 | tig0041859:+3253 | Msa1462030:intergenic |
ATATATACCTCTCTTAGCTT+TGG | 0.385685 | tig0041859:+1075 | Msa1462030:intergenic |
ATAGGGTAAGGAAGACTTGT+TGG | 0.390458 | tig0041859:+3270 | Msa1462030:intergenic |
GAAGTTTAGGGTTGCAGTTA+AGG | 0.391787 | tig0041859:-3040 | Msa1462030:CDS |
AGAGGTGGAATTGCACCAAT+TGG | 0.409164 | tig0041859:-3105 | Msa1462030:CDS |
GTGTGGCGCCTAGAGAAGAT+AGG | 0.412903 | tig0041859:-1183 | Msa1462030:CDS |
TACATAGTGAAGGAAAGAAC+TGG | 0.419237 | tig0041859:-3168 | Msa1462030:intron |
GAGGTGGAATTGCACCAATT+GGG | 0.439927 | tig0041859:-3104 | Msa1462030:CDS |
CATCTTTCCCTATCTTCTCT+AGG | 0.450984 | tig0041859:+1175 | Msa1462030:intergenic |
ATGGGAGTAATCAAAGTGTT+AGG | 0.455811 | tig0041859:-3011 | Msa1462030:CDS |
ATCTCTAGCTTTATAGGGTA+AGG | 0.456668 | tig0041859:+3258 | Msa1462030:intergenic |
TTAATTAAAGCTAATATCAA+TGG | 0.468078 | tig0041859:-403 | Msa1462030:CDS |
CACAAAATGGGATGAGTTGG+AGG | 0.470432 | tig0041859:-172 | Msa1462030:CDS |
GCATATTGGATTCAGAAGAA+TGG | 0.478493 | tig0041859:+429 | Msa1462030:intergenic |
GATGAGTTGGAGGAAATTGA+TGG | 0.483767 | tig0041859:-162 | Msa1462030:CDS |
CAATTCCACCTCTCATAGTA+AGG | 0.486241 | tig0041859:+3115 | Msa1462030:intergenic |
TTGGCTCAAGTACTCTCTGC+TGG | 0.488877 | tig0041859:+369 | Msa1462030:intergenic |
CCACCACAAAATGATGGCTA+AGG | 0.503068 | tig0041859:-1145 | Msa1462030:CDS |
TGGAGAAGCATACACAAAAT+GGG | 0.514297 | tig0041859:-184 | Msa1462030:CDS |
CACACATCATCGCCAAGCAT+TGG | 0.517632 | tig0041859:+1201 | Msa1462030:intergenic |
AAACACCATCCACCAATGCT+TGG | 0.521377 | tig0041859:-1213 | Msa1462030:CDS |
CCCTATAAAGCTAGAGATTG+TGG | 0.525360 | tig0041859:-3253 | Msa1462030:CDS |
AACATTGCTTTGTTAACCCA+AGG | 0.527734 | tig0041859:-126 | None:intergenic |
ATTCTAGCTGGATAAAGTGC+AGG | 0.537572 | tig0041859:-3062 | Msa1462030:CDS |
GTGAACTCTATGTCCCCAAT+TGG | 0.542652 | tig0041859:+3090 | Msa1462030:intergenic |
CACCACAAAATGATGGCTAA+GGG | 0.548210 | tig0041859:-1144 | Msa1462030:CDS |
AGCTATATAGACAAATTGGT+TGG | 0.548813 | tig0041859:-204 | Msa1462030:CDS |
AGTTCACAGATAATTCTAGC+TGG | 0.556731 | tig0041859:-3074 | Msa1462030:CDS |
ACATCATCGCCAAGCATTGG+TGG | 0.557359 | tig0041859:+1204 | Msa1462030:intergenic |
ATACACAAAATGGGATGAGT+TGG | 0.560256 | tig0041859:-175 | Msa1462030:CDS |
TTCAGAAGAATGGTAAATTG+AGG | 0.561852 | tig0041859:+439 | Msa1462030:intergenic |
GTTGCAGTTAAGGTGAGTCA+TGG | 0.564275 | tig0041859:-3030 | Msa1462030:CDS |
CATCGCCAAGCATTGGTGGA+TGG | 0.571915 | tig0041859:+1208 | Msa1462030:intergenic |
CTAGAGAAGATAGGGAAAGA+TGG | 0.572158 | tig0041859:-1174 | Msa1462030:CDS |
ATGAGTTGGAGGAAATTGAT+GGG | 0.572531 | tig0041859:-161 | Msa1462030:CDS |
TTCAATTCTCCAGAAAGTAA+TGG | 0.573973 | tig0041859:+3138 | Msa1462030:intergenic |
AGTAGAATACTTGACATTGA+AGG | 0.580462 | tig0041859:-3345 | Msa1462030:CDS |
AGGTGGAATTGCACCAATTG+GGG | 0.581694 | tig0041859:-3103 | Msa1462030:CDS |
CAAAGTGTTAGGATTCAAGA+AGG | 0.583699 | tig0041859:-3000 | Msa1462030:CDS |
TGTGGCGCCTAGAGAAGATA+GGG | 0.589096 | tig0041859:-1182 | Msa1462030:CDS |
AGCTTTCCACCACAAAATGA+TGG | 0.589747 | tig0041859:-1151 | Msa1462030:CDS |
CAATGCTTGGCGATGATGTG+TGG | 0.590954 | tig0041859:-1200 | Msa1462030:CDS |
TTGCAGTTAAGGTGAGTCAT+GGG | 0.592429 | tig0041859:-3029 | Msa1462030:CDS |
GAATTGAACCTTACTATGAG+AGG | 0.607156 | tig0041859:-3123 | Msa1462030:CDS |
TGAGTTGGAGGAAATTGATG+GGG | 0.615793 | tig0041859:-160 | Msa1462030:CDS |
TTGAACCTTACTATGAGAGG+TGG | 0.618381 | tig0041859:-3120 | Msa1462030:CDS |
GCATGCAATGACTTGTGACA+TGG | 0.626229 | tig0041859:-488 | Msa1462030:CDS |
ACATAGTGAAGGAAAGAACT+GGG | 0.634050 | tig0041859:-3167 | Msa1462030:intron |
AGCAAGATTTATAGGTACAG+TGG | 0.636654 | tig0041859:-463 | Msa1462030:CDS |
GTACTTGAGCCAAATGAACA+AGG | 0.651863 | tig0041859:-359 | Msa1462030:intron |
ACCACAAAATGATGGCTAAG+GGG | 0.658660 | tig0041859:-1143 | Msa1462030:CDS |
TGATACTCCAAAGCTAAGAG+AGG | 0.665341 | tig0041859:-1082 | Msa1462030:intron |
CATGCAATGACTTGTGACAT+GGG | 0.667953 | tig0041859:-487 | Msa1462030:CDS |
TGGGGATGTCTGATAGAATG+TGG | 0.679640 | tig0041859:-525 | Msa1462030:CDS |
TTTGTTGTTAAGGATCATCG+TGG | 0.682651 | tig0041859:-2964 | Msa1462030:CDS |
GATTCAAGAAGGCATGACTG+AGG | 0.696401 | tig0041859:-2989 | Msa1462030:CDS |
ATGCAATGACTTGTGACATG+GGG | 0.729736 | tig0041859:-486 | Msa1462030:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TTTTTTTTTAATAAAATTAA+CGG | + | tig0041859:1000-1019 | Msa1462030:intergenic | 0.0% |
!! | CATCTAATTAATATATTTAA+GGG | + | tig0041859:721-740 | Msa1462030:intergenic | 10.0% |
!!! | AACTAAAAAATGAATTATTT+TGG | - | tig0041859:937-956 | Msa1462030:intron | 10.0% |
!!! | TTTTATTAAAAAAAAAGGTT+AGG | - | tig0041859:1004-1023 | Msa1462030:intron | 10.0% |
!! | TTTATTAAAAAAAAAGGTTA+GGG | - | tig0041859:1005-1024 | Msa1462030:intron | 10.0% |
!! | AATTTAATTAAAAAACGTTA+GGG | + | tig0041859:1938-1957 | Msa1462030:intergenic | 10.0% |
!! | AAATTTAATTAAAAAACGTT+AGG | + | tig0041859:1939-1958 | Msa1462030:intergenic | 10.0% |
!!! | CGTTTTTTAATTAAATTTAA+CGG | - | tig0041859:1941-1960 | Msa1462030:intron | 10.0% |
!!! | AACTAAAAAATGAATTATTT+TGG | + | tig0041859:937-956 | Msa1462030:intergenic | 10.0% |
!! | ATTATCATAATTCATAAACT+TGG | - | tig0041859:546-565 | Msa1462030:intron | 15.0% |
!! | CCATCTAATTAATATATTTA+AGG | + | tig0041859:722-741 | Msa1462030:intergenic | 15.0% |
!! | CCTTAAATATATTAATTAGA+TGG | - | tig0041859:719-738 | Msa1462030:intron | 15.0% |
!! | TTTGTCAAAAAAAAAAAGTT+GGG | + | tig0041859:746-765 | Msa1462030:intergenic | 15.0% |
!! | TTATATTTAGTATTTACACA+AGG | - | tig0041859:815-834 | Msa1462030:intron | 15.0% |
!! | TCTAACTATTTATTTAGTAT+CGG | - | tig0041859:903-922 | Msa1462030:intron | 15.0% |
!!! | ATAATTCATTTTTTAGTTAG+AGG | + | tig0041859:2038-2057 | Msa1462030:intergenic | 15.0% |
!!! | TTTTAATAAAATTAACGGAA+AGG | + | tig0041859:995-1014 | Msa1462030:intergenic | 15.0% |
!! | TTTGCAAAAAAATGAAAAAA+GGG | - | tig0041859:1536-1555 | Msa1462030:intron | 15.0% |
!!! | TTGTTTTTGTAAAATTAGAA+AGG | - | tig0041859:1664-1683 | Msa1462030:intron | 15.0% |
!!! | TGTTTTTGTAAAATTAGAAA+GGG | - | tig0041859:1665-1684 | Msa1462030:intron | 15.0% |
!! | TTTAATTAAATTTAACGGAA+AGG | - | tig0041859:1946-1965 | Msa1462030:intron | 15.0% |
!!! | ATAATTCATTTTTTAGTTAG+AGG | - | tig0041859:2038-2057 | Msa1462030:intron | 15.0% |
!! | TCTAACTATTTATTTAGTAT+CGG | + | tig0041859:903-922 | Msa1462030:intergenic | 15.0% |
!!! | ATAAATATTTTTGCATGTTA+AGG | - | tig0041859:2155-2174 | Msa1462030:intron | 15.0% |
!! | AGGTATATATCTTTATAATT+AGG | - | tig0041859:2411-2430 | Msa1462030:intron | 15.0% |
!! | GGTATATATCTTTATAATTA+GGG | - | tig0041859:2412-2431 | Msa1462030:intron | 15.0% |
!! | GTATATATCTTTATAATTAG+GGG | - | tig0041859:2413-2432 | Msa1462030:intron | 15.0% |
!! | TTAATTAAAGCTAATATCAA+TGG | - | tig0041859:3070-3089 | Msa1462030:CDS | 15.0% |
!! | CATAAACTTGGTATAATATA+AGG | - | tig0041859:558-577 | Msa1462030:intron | 20.0% |
!!! | CATGACTTAATTTTTTGTTT+AGG | - | tig0041859:600-619 | Msa1462030:intron | 20.0% |
!! | GATATTATTGCAATATAGAT+TGG | - | tig0041859:625-644 | Msa1462030:intron | 20.0% |
!! | TTGTCAAAAAAAAAAAGTTG+GGG | + | tig0041859:745-764 | Msa1462030:intergenic | 20.0% |
!! | CTTTGTCAAAAAAAAAAAGT+TGG | + | tig0041859:747-766 | Msa1462030:intergenic | 20.0% |
!!! | CTTTTTTTTTTTGACAAAGA+TGG | - | tig0041859:748-767 | Msa1462030:intron | 20.0% |
!! | GATACTAAATAAATAGTTAG+AGG | + | tig0041859:2069-2088 | Msa1462030:intergenic | 20.0% |
!!! | TTTTAGGGATTTGAAAAATT+GGG | + | tig0041859:1413-1432 | Msa1462030:intergenic | 20.0% |
!!! | ATTTTAGGGATTTGAAAAAT+TGG | + | tig0041859:1414-1433 | Msa1462030:intergenic | 20.0% |
!!! | AATTTTACAAGAGAAATTTG+GGG | + | tig0041859:1445-1464 | Msa1462030:intergenic | 20.0% |
!!! | GAATTTTACAAGAGAAATTT+GGG | + | tig0041859:1446-1465 | Msa1462030:intergenic | 20.0% |
!! | CTTTGCAAAAAAATGAAAAA+AGG | - | tig0041859:1535-1554 | Msa1462030:intron | 20.0% |
!! | AAATTTGAAAAAATCCAGAT+TGG | + | tig0041859:1834-1853 | Msa1462030:intergenic | 20.0% |
!!! | AAATTTTGTTTTTGATTGCT+GGG | - | tig0041859:1848-1867 | Msa1462030:intron | 20.0% |
!!! | CTTTCTCTTTTGAATTATTT+TGG | + | tig0041859:2005-2024 | Msa1462030:intergenic | 20.0% |
!! | TAATTCAAAAGAGAAAGTTA+AGG | - | tig0041859:2008-2027 | Msa1462030:intron | 20.0% |
!! | AATTCAAAAGAGAAAGTTAA+GGG | - | tig0041859:2009-2028 | Msa1462030:intron | 20.0% |
!! | GATACTAAATAAATAGTTAG+AGG | - | tig0041859:2069-2088 | Msa1462030:intron | 20.0% |
!!! | TACATCAAAGTATTTAAAGT+AGG | + | tig0041859:2113-2132 | Msa1462030:intergenic | 20.0% |
!!! | TCTTTATGCTAATTTTGTTT+AGG | - | tig0041859:2475-2494 | Msa1462030:intron | 20.0% |
!! | AAGAAATTGATCTTGTATAA+TGG | + | tig0041859:2594-2613 | Msa1462030:intergenic | 20.0% |
!!! | TAAGTTTAAGTTCAAATTTG+AGG | + | tig0041859:2634-2653 | Msa1462030:intergenic | 20.0% |
!!! | ATTTATCTGAAATCAGATTT+TGG | - | tig0041859:2922-2941 | Msa1462030:intron | 20.0% |
!!! | TTTATCTGAAATCAGATTTT+GGG | - | tig0041859:2923-2942 | Msa1462030:intron | 20.0% |
!!! | GCTTTAATTAATTTGCATAT+TGG | + | tig0041859:3061-3080 | Msa1462030:intergenic | 20.0% |
!! | TTACATTATATGCTAGATAT+TGG | - | tig0041859:3199-3218 | Msa1462030:CDS | 20.0% |
! | ATTCAACAAATACATAGTGA+AGG | - | tig0041859:295-314 | Msa1462030:intron | 25.0% |
! | TACTTATTTCCAACTAACTT+TGG | - | tig0041859:673-692 | Msa1462030:intron | 25.0% |
! | AAAAAAAGACCAAAGTTAGT+TGG | + | tig0041859:685-704 | Msa1462030:intergenic | 25.0% |
! | TTAGTATTTACACAAGGAAA+TGG | - | tig0041859:821-840 | Msa1462030:intron | 25.0% |
!!! | CTTTTTGTGACACTTTTTTT+AGG | + | tig0041859:849-868 | Msa1462030:intergenic | 25.0% |
! | CACAAAAAGTAGTACTTTAA+AGG | - | tig0041859:860-879 | Msa1462030:intron | 25.0% |
!!! | CTATTTATTTAGTATCGGTT+TGG | - | tig0041859:908-927 | Msa1462030:intron | 25.0% |
! | ATTTATTCAGATGAAGAGAA+GGG | + | tig0041859:1235-1254 | Msa1462030:intergenic | 25.0% |
! | AATTTATTCAGATGAAGAGA+AGG | + | tig0041859:1236-1255 | Msa1462030:intergenic | 25.0% |
! | TTCTCTTCATCTGAATAAAT+TGG | - | tig0041859:1235-1254 | Msa1462030:intron | 25.0% |
! | ATTTGAAAAATTGGGATTTG+AGG | + | tig0041859:1405-1424 | Msa1462030:intergenic | 25.0% |
!! | CGAATTTTACAAGAGAAATT+TGG | + | tig0041859:1447-1466 | Msa1462030:intergenic | 25.0% |
! | TTCTCTTGTAAAATTCGAAT+TGG | - | tig0041859:1450-1469 | Msa1462030:intron | 25.0% |
!!! | TTTTTTTGCAAAGAAGAAGA+AGG | + | tig0041859:1528-1547 | Msa1462030:intergenic | 25.0% |
! | TTGTAAAATTAGAAAGGGTT+AGG | - | tig0041859:1670-1689 | Msa1462030:intron | 25.0% |
! | TGTAAAATTAGAAAGGGTTA+GGG | - | tig0041859:1671-1690 | Msa1462030:intron | 25.0% |
! | ATGTTGTTGCTAATTTATGA+AGG | - | tig0041859:1723-1742 | Msa1462030:intron | 25.0% |
!!! | CAAATTTTGTTTTTGATTGC+TGG | - | tig0041859:1847-1866 | Msa1462030:intron | 25.0% |
!!! | TATTTTCTTGTTGCTATTGA+TGG | - | tig0041859:1892-1911 | Msa1462030:intron | 25.0% |
!!! | CTATTTATTTAGTATCGGTT+TGG | + | tig0041859:908-927 | Msa1462030:intergenic | 25.0% |
! | TATATTGTACCTTGTTCATT+TGG | + | tig0041859:3126-3145 | Msa1462030:intergenic | 25.0% |
!!! | GTCCTCTAATTCATTTTAAT+TGG | - | tig0041859:3221-3240 | Msa1462030:CDS | 25.0% |
! | CACCAATTAAAATGAATTAG+AGG | + | tig0041859:3226-3245 | Msa1462030:intergenic | 25.0% |
!! | CTATATAGCTCTACAAATTT+AGG | + | tig0041859:3259-3278 | Msa1462030:intergenic | 25.0% |
AGTAGAATACTTGACATTGA+AGG | - | tig0041859:128-147 | Msa1462030:CDS | 30.0% | |
TCAACAAGACTTATGCTTAT+AGG | + | tig0041859:158-177 | Msa1462030:intergenic | 30.0% | |
TTCAATTCTCCAGAAAGTAA+TGG | + | tig0041859:338-357 | Msa1462030:intergenic | 30.0% | |
AAAACTACAACAACAGAAGT+GGG | + | tig0041859:776-795 | Msa1462030:intergenic | 30.0% | |
TTGTTGTGTAGTTTATGGAA+AGG | + | tig0041859:1180-1199 | Msa1462030:intergenic | 30.0% | |
! | AGTTGTTGTTGTGTAGTTTA+TGG | + | tig0041859:1185-1204 | Msa1462030:intergenic | 30.0% |
CTATTCTTCTTCTTTGAACA+GGG | - | tig0041859:1488-1507 | Msa1462030:intron | 30.0% | |
TATTCTTCTTCTTTGAACAG+GGG | - | tig0041859:1489-1508 | Msa1462030:intron | 30.0% | |
TCTCACAAGAAAATCAATCT+GGG | + | tig0041859:1580-1599 | Msa1462030:intergenic | 30.0% | |
ATCTCACAAGAAAATCAATC+TGG | + | tig0041859:1581-1600 | Msa1462030:intergenic | 30.0% | |
TTGTTGCTAATTTATGAAGG+AGG | - | tig0041859:1726-1745 | Msa1462030:intron | 30.0% | |
ATATATACCTCTCTTAGCTT+TGG | + | tig0041859:2401-2420 | Msa1462030:intergenic | 30.0% | |
TTAGCATAAAGATAGACTCT+AGG | + | tig0041859:2467-2486 | Msa1462030:intergenic | 30.0% | |
ATGCTAATTGCACATGTTAA+AGG | + | tig0041859:2831-2850 | Msa1462030:intergenic | 30.0% | |
TTCAGAAGAATGGTAAATTG+AGG | + | tig0041859:3037-3056 | Msa1462030:intergenic | 30.0% | |
AGCATATAATGTAATCCACA+AGG | + | tig0041859:3193-3212 | Msa1462030:intergenic | 30.0% | |
! | TAGCTCTACAAATTTAGGAA+TGG | + | tig0041859:3254-3273 | Msa1462030:intergenic | 30.0% |
GTAGAGCTATATAGACAAAT+TGG | - | tig0041859:3265-3284 | Msa1462030:CDS | 30.0% | |
AGCTATATAGACAAATTGGT+TGG | - | tig0041859:3269-3288 | Msa1462030:CDS | 30.0% | |
!! | GAAGACTTGTTGGAACAATT+TGG | + | tig0041859:196-215 | Msa1462030:intergenic | 35.0% |
!! | ATCTCTAGCTTTATAGGGTA+AGG | + | tig0041859:218-237 | Msa1462030:intergenic | 35.0% |
!! | CCACAATCTCTAGCTTTATA+GGG | + | tig0041859:223-242 | Msa1462030:intergenic | 35.0% |
!! | ACCACAATCTCTAGCTTTAT+AGG | + | tig0041859:224-243 | Msa1462030:intergenic | 35.0% |
! | CAATTCTCGTTTTCATCATG+TGG | + | tig0041859:263-282 | Msa1462030:intergenic | 35.0% |
CACATGATGAAAACGAGAAT+TGG | - | tig0041859:261-280 | Msa1462030:intron | 35.0% | |
TACATAGTGAAGGAAAGAAC+TGG | - | tig0041859:305-324 | Msa1462030:intron | 35.0% | |
ACATAGTGAAGGAAAGAACT+GGG | - | tig0041859:306-325 | Msa1462030:intron | 35.0% | |
GAATTGAACCTTACTATGAG+AGG | - | tig0041859:350-369 | Msa1462030:intron | 35.0% | |
AGTTCACAGATAATTCTAGC+TGG | - | tig0041859:399-418 | Msa1462030:CDS | 35.0% | |
GATAAAGTGCAGGAAGTTTA+GGG | - | tig0041859:421-440 | Msa1462030:CDS | 35.0% | |
! | ATGGGAGTAATCAAAGTGTT+AGG | - | tig0041859:462-481 | Msa1462030:CDS | 35.0% |
! | CAAAGTGTTAGGATTCAAGA+AGG | - | tig0041859:473-492 | Msa1462030:CDS | 35.0% |
!! | TTTGTTGTTAAGGATCATCG+TGG | - | tig0041859:509-528 | Msa1462030:CDS | 35.0% |
AAACTACAACAACAGAAGTG+GGG | + | tig0041859:775-794 | Msa1462030:intergenic | 35.0% | |
CAAAACTACAACAACAGAAG+TGG | + | tig0041859:777-796 | Msa1462030:intergenic | 35.0% | |
GAAGAAAAGGATGAAGAGAA+GGG | + | tig0041859:1096-1115 | Msa1462030:intergenic | 35.0% | |
AGAAGAAAAGGATGAAGAGA+AGG | + | tig0041859:1097-1116 | Msa1462030:intergenic | 35.0% | |
GAGTGGAAAAGAAGAAGAAA+AGG | + | tig0041859:1109-1128 | Msa1462030:intergenic | 35.0% | |
! | TGGATTGTTGTTGTTGTTGA+AGG | + | tig0041859:1131-1150 | Msa1462030:intergenic | 35.0% |
! | AGATTGATGTGTTGTTGTTG+TGG | + | tig0041859:1151-1170 | Msa1462030:intergenic | 35.0% |
ATTTATGAAGGAGGAAGAGA+GGG | + | tig0041859:1735-1754 | Msa1462030:intergenic | 35.0% | |
TGAAGAGAAGGGATTTATGA+AGG | + | tig0041859:1224-1243 | Msa1462030:intergenic | 35.0% | |
AGAACGCAAGAAAGAAAGAA+AGG | - | tig0041859:1290-1309 | Msa1462030:intron | 35.0% | |
GAACGCAAGAAAGAAAGAAA+GGG | - | tig0041859:1291-1310 | Msa1462030:intron | 35.0% | |
AACGCAAGAAAGAAAGAAAG+GGG | - | tig0041859:1292-1311 | Msa1462030:intron | 35.0% | |
CGAATAGAATAAGCTGTTGA+AGG | - | tig0041859:1323-1342 | Msa1462030:intron | 35.0% | |
ATAGAATAAGCTGTTGAAGG+AGG | - | tig0041859:1326-1345 | Msa1462030:intron | 35.0% | |
! | TTGGGGATTTGAGGATTTTA+GGG | + | tig0041859:1428-1447 | Msa1462030:intergenic | 35.0% |
! | TTTGGGGATTTGAGGATTTT+AGG | + | tig0041859:1429-1448 | Msa1462030:intergenic | 35.0% |
AAGAGAAATTTGGGGATTTG+AGG | + | tig0041859:1437-1456 | Msa1462030:intergenic | 35.0% | |
CCTGTTCAAAGAAGAAGAAT+AGG | + | tig0041859:1490-1509 | Msa1462030:intergenic | 35.0% | |
CCTATTCTTCTTCTTTGAAC+AGG | - | tig0041859:1487-1506 | Msa1462030:intron | 35.0% | |
ATTCTTCTTCTTTGAACAGG+GGG | - | tig0041859:1490-1509 | Msa1462030:intron | 35.0% | |
GAGTTTCTTGTTCAGATTGA+TGG | - | tig0041859:1628-1647 | Msa1462030:intron | 35.0% | |
ATTAGAAAGGGTTAGGGATT+TGG | - | tig0041859:1677-1696 | Msa1462030:intron | 35.0% | |
AATTTATGAAGGAGGAAGAG+AGG | - | tig0041859:1734-1753 | Msa1462030:intron | 35.0% | |
ATTTATGAAGGAGGAAGAGA+GGG | - | tig0041859:1735-1754 | Msa1462030:intron | 35.0% | |
! | TGTTGTTGTTGTTGTTGTTG+TGG | - | tig0041859:1765-1784 | Msa1462030:intron | 35.0% |
! | ATCCAGATTGGCTGTTAAAT+TGG | + | tig0041859:1822-1841 | Msa1462030:intergenic | 35.0% |
GAAAGGACCAAAATGTGTAA+CGG | - | tig0041859:1963-1982 | Msa1462030:intron | 35.0% | |
! | TTTCTCTCCGTTACACATTT+TGG | + | tig0041859:1973-1992 | Msa1462030:intergenic | 35.0% |
! | TGTAACGGAGAGAAAGTTAA+GGG | - | tig0041859:1978-1997 | Msa1462030:intron | 35.0% |
! | AAGATAGACTCTAGGAAATG+TGG | + | tig0041859:2459-2478 | Msa1462030:intergenic | 35.0% |
! | TGAAATCAGATTTTGGGCAT+GGG | - | tig0041859:2929-2948 | Msa1462030:intron | 35.0% |
AGCAAGATTTATAGGTACAG+TGG | - | tig0041859:3010-3029 | Msa1462030:CDS | 35.0% | |
GCATATTGGATTCAGAAGAA+TGG | + | tig0041859:3047-3066 | Msa1462030:intergenic | 35.0% | |
! | TGTAGTCTTACTTTACCTTG+TGG | - | tig0041859:3175-3194 | Msa1462030:intron | 35.0% |
! | TTGGAGAAGCATACACAAAA+TGG | - | tig0041859:3288-3307 | Msa1462030:CDS | 35.0% |
! | TGGAGAAGCATACACAAAAT+GGG | - | tig0041859:3289-3308 | Msa1462030:CDS | 35.0% |
ATACACAAAATGGGATGAGT+TGG | - | tig0041859:3298-3317 | Msa1462030:CDS | 35.0% | |
! | ATGAGTTGGAGGAAATTGAT+GGG | - | tig0041859:3312-3331 | Msa1462030:CDS | 35.0% |
ATAGGGTAAGGAAGACTTGT+TGG | + | tig0041859:206-225 | Msa1462030:intergenic | 40.0% | |
CCCTATAAAGCTAGAGATTG+TGG | - | tig0041859:220-239 | Msa1462030:intron | 40.0% | |
CTAGAGATTGTGGTACTTGA+TGG | - | tig0041859:230-249 | Msa1462030:intron | 40.0% | |
TTGAACCTTACTATGAGAGG+TGG | - | tig0041859:353-372 | Msa1462030:intron | 40.0% | |
CAATTCCACCTCTCATAGTA+AGG | + | tig0041859:361-380 | Msa1462030:intergenic | 40.0% | |
! | ATTCTAGCTGGATAAAGTGC+AGG | - | tig0041859:411-430 | Msa1462030:CDS | 40.0% |
GGATAAAGTGCAGGAAGTTT+AGG | - | tig0041859:420-439 | Msa1462030:CDS | 40.0% | |
! | GAAGTTTAGGGTTGCAGTTA+AGG | - | tig0041859:433-452 | Msa1462030:CDS | 40.0% |
TTGCAGTTAAGGTGAGTCAT+GGG | - | tig0041859:444-463 | Msa1462030:CDS | 40.0% | |
!! | GACTGAGGCATTTGTTGTTA+AGG | - | tig0041859:499-518 | Msa1462030:CDS | 40.0% |
CAGTAACGTGACAAAGTTAG+AGG | + | tig0041859:964-983 | Msa1462030:intergenic | 40.0% | |
GAAGGAGGAAAAGAAGGATA+CGG | + | tig0041859:1074-1093 | Msa1462030:intergenic | 40.0% | |
AAAAGGATGAAGAGAAGGGA+AGG | + | tig0041859:1092-1111 | Msa1462030:intergenic | 40.0% | |
! | TGTTGTTGTTGTTGAAGGAG+TGG | + | tig0041859:1126-1145 | Msa1462030:intergenic | 40.0% |
GATTTATGAAGGAGGAAGAG+AGG | + | tig0041859:1213-1232 | Msa1462030:intergenic | 40.0% | |
AGAGAAGGGATTTATGAAGG+AGG | + | tig0041859:1221-1240 | Msa1462030:intergenic | 40.0% | |
AGAAAGAAAGAAAGGGGTAG+AGG | - | tig0041859:1298-1317 | Msa1462030:intron | 40.0% | |
AAAGGGTTAGGGATTTGGAA+AGG | - | tig0041859:1682-1701 | Msa1462030:intron | 40.0% | |
AAGGGTTAGGGATTTGGAAA+GGG | - | tig0041859:1683-1702 | Msa1462030:intron | 40.0% | |
TTTGGAAAGGGAAGAAGAAG+AGG | - | tig0041859:1695-1714 | Msa1462030:intron | 40.0% | |
AGCCAATTTAACAGCCAATC+TGG | - | tig0041859:1817-1836 | Msa1462030:intron | 40.0% | |
TGGGTTTGTGTATGAGTTTC+TGG | - | tig0041859:1867-1886 | Msa1462030:intron | 40.0% | |
GGGTTTGTGTATGAGTTTCT+GGG | - | tig0041859:1868-1887 | Msa1462030:intron | 40.0% | |
! | GTGTAACGGAGAGAAAGTTA+AGG | - | tig0041859:1977-1996 | Msa1462030:intron | 40.0% |
CATCTTTCCCTATCTTCTCT+AGG | + | tig0041859:2301-2320 | Msa1462030:intergenic | 40.0% | |
CTAGAGAAGATAGGGAAAGA+TGG | - | tig0041859:2299-2318 | Msa1462030:intron | 40.0% | |
AGCTTTCCACCACAAAATGA+TGG | - | tig0041859:2322-2341 | Msa1462030:intron | 40.0% | |
CACCACAAAATGATGGCTAA+GGG | - | tig0041859:2329-2348 | Msa1462030:intron | 40.0% | |
ACCACAAAATGATGGCTAAG+GGG | - | tig0041859:2330-2349 | Msa1462030:intron | 40.0% | |
TGATACTCCAAAGCTAAGAG+AGG | - | tig0041859:2391-2410 | Msa1462030:intron | 40.0% | |
! | CTGAAATCAGATTTTGGGCA+TGG | - | tig0041859:2928-2947 | Msa1462030:intron | 40.0% |
! | GAAATCAGATTTTGGGCATG+GGG | - | tig0041859:2930-2949 | Msa1462030:intron | 40.0% |
! | CATGCAATGACTTGTGACAT+GGG | - | tig0041859:2986-3005 | Msa1462030:CDS | 40.0% |
! | ATGCAATGACTTGTGACATG+GGG | - | tig0041859:2987-3006 | Msa1462030:CDS | 40.0% |
ACATGGGGAGCAAGATTTAT+AGG | - | tig0041859:3002-3021 | Msa1462030:CDS | 40.0% | |
GTACTTGAGCCAAATGAACA+AGG | - | tig0041859:3114-3133 | Msa1462030:CDS | 40.0% | |
TGTGAGTCTTGAGTAGTAGA+TGG | + | tig0041859:3153-3172 | Msa1462030:intergenic | 40.0% | |
! | GATGAGTTGGAGGAAATTGA+TGG | - | tig0041859:3311-3330 | Msa1462030:CDS | 40.0% |
! | TGAGTTGGAGGAAATTGATG+GGG | - | tig0041859:3313-3332 | Msa1462030:CDS | 40.0% |
GGGAAGAGACCATTACTTTC+TGG | - | tig0041859:326-345 | Msa1462030:intron | 45.0% | |
AGAGGTGGAATTGCACCAAT+TGG | - | tig0041859:368-387 | Msa1462030:CDS | 45.0% | |
GAGGTGGAATTGCACCAATT+GGG | - | tig0041859:369-388 | Msa1462030:CDS | 45.0% | |
AGGTGGAATTGCACCAATTG+GGG | - | tig0041859:370-389 | Msa1462030:CDS | 45.0% | |
GTGAACTCTATGTCCCCAAT+TGG | + | tig0041859:386-405 | Msa1462030:intergenic | 45.0% | |
GTTGCAGTTAAGGTGAGTCA+TGG | - | tig0041859:443-462 | Msa1462030:CDS | 45.0% | |
! | GATTCAAGAAGGCATGACTG+AGG | - | tig0041859:484-503 | Msa1462030:CDS | 45.0% |
TACGGTGGTAGCATGAAGAA+GGG | + | tig0041859:1056-1075 | Msa1462030:intergenic | 45.0% | |
ATACGGTGGTAGCATGAAGA+AGG | + | tig0041859:1057-1076 | Msa1462030:intergenic | 45.0% | |
AGAAGGGAAGGAGGAAAAGA+AGG | + | tig0041859:1080-1099 | Msa1462030:intergenic | 45.0% | |
TCATCTCACGCAACTACAAC+TGG | - | tig0041859:1362-1381 | Msa1462030:intron | 45.0% | |
AAACACCATCCACCAATGCT+TGG | - | tig0041859:2260-2279 | Msa1462030:intron | 45.0% | |
! | CCTTAGCCATCATTTTGTGG+TGG | + | tig0041859:2331-2350 | Msa1462030:intergenic | 45.0% |
CCACCACAAAATGATGGCTA+AGG | - | tig0041859:2328-2347 | Msa1462030:intron | 45.0% | |
! | TCCCCTTAGCCATCATTTTG+TGG | + | tig0041859:2334-2353 | Msa1462030:intergenic | 45.0% |
TGGGGATGTCTGATAGAATG+TGG | - | tig0041859:2948-2967 | Msa1462030:intron | 45.0% | |
! | GCATGCAATGACTTGTGACA+TGG | - | tig0041859:2985-3004 | Msa1462030:CDS | 45.0% |
! | CACAAAATGGGATGAGTTGG+AGG | - | tig0041859:3301-3320 | Msa1462030:CDS | 45.0% |
!!! | GTTAATTTTATTAAAAAAAA+AGG | - | tig0041859:999-1018 | Msa1462030:intron | 5.0% |
!! | AATCTAATATATTTAATTAA+AGG | + | tig0041859:2857-2876 | Msa1462030:intergenic | 5.0% |
ACGGTGGTAGCATGAAGAAG+GGG | + | tig0041859:1055-1074 | Msa1462030:intergenic | 50.0% | |
GGAGGAAAAGAAGGATACGG+TGG | + | tig0041859:1071-1090 | Msa1462030:intergenic | 50.0% | |
AGGATGAAGAGAAGGGAAGG+AGG | + | tig0041859:1089-1108 | Msa1462030:intergenic | 50.0% | |
GGAAAGGGAAGAAGAAGAGG+AGG | - | tig0041859:1698-1717 | Msa1462030:intron | 50.0% | |
!! | ACATCATCGCCAAGCATTGG+TGG | + | tig0041859:2272-2291 | Msa1462030:intergenic | 50.0% |
CACACATCATCGCCAAGCAT+TGG | + | tig0041859:2275-2294 | Msa1462030:intergenic | 50.0% | |
CAATGCTTGGCGATGATGTG+TGG | - | tig0041859:2273-2292 | Msa1462030:intron | 50.0% | |
TGTGGCGCCTAGAGAAGATA+GGG | - | tig0041859:2291-2310 | Msa1462030:intron | 50.0% | |
TTGGCTCAAGTACTCTCTGC+TGG | + | tig0041859:3107-3126 | Msa1462030:intergenic | 50.0% | |
CGGTGGTAGCATGAAGAAGG+GGG | + | tig0041859:1054-1073 | Msa1462030:intergenic | 55.0% | |
!! | CATCGCCAAGCATTGGTGGA+TGG | + | tig0041859:2268-2287 | Msa1462030:intergenic | 55.0% |
GTGTGGCGCCTAGAGAAGAT+AGG | - | tig0041859:2290-2309 | Msa1462030:intron | 55.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
tig0041859 | gene | 128 | 3367 | 128 | ID=Msa1462030;Name=Msa1462030 |
tig0041859 | mRNA | 128 | 3367 | 128 | ID=Msa1462030-mRNA-1;Parent=Msa1462030;Name=Msa1462030-mRNA-1;_AED=0.17;_eAED=0.17;_QI=0|0.75|0.4|1|0.75|0.6|5|0|287 |
tig0041859 | exon | 3185 | 3367 | 3185 | ID=Msa1462030-mRNA-1:exon:23464;Parent=Msa1462030-mRNA-1 |
tig0041859 | exon | 2959 | 3178 | 2959 | ID=Msa1462030-mRNA-1:exon:23463;Parent=Msa1462030-mRNA-1 |
tig0041859 | exon | 1083 | 1243 | 1083 | ID=Msa1462030-mRNA-1:exon:23462;Parent=Msa1462030-mRNA-1 |
tig0041859 | exon | 360 | 557 | 360 | ID=Msa1462030-mRNA-1:exon:23461;Parent=Msa1462030-mRNA-1 |
tig0041859 | exon | 128 | 226 | 128 | ID=Msa1462030-mRNA-1:exon:23460;Parent=Msa1462030-mRNA-1 |
tig0041859 | CDS | 3185 | 3367 | 3185 | ID=Msa1462030-mRNA-1:cds;Parent=Msa1462030-mRNA-1 |
tig0041859 | CDS | 2959 | 3178 | 2959 | ID=Msa1462030-mRNA-1:cds;Parent=Msa1462030-mRNA-1 |
tig0041859 | CDS | 1083 | 1243 | 1083 | ID=Msa1462030-mRNA-1:cds;Parent=Msa1462030-mRNA-1 |
tig0041859 | CDS | 360 | 557 | 360 | ID=Msa1462030-mRNA-1:cds;Parent=Msa1462030-mRNA-1 |
tig0041859 | CDS | 128 | 226 | 128 | ID=Msa1462030-mRNA-1:cds;Parent=Msa1462030-mRNA-1 |
Gene Sequence |
Protein sequence |