Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1463340 | KAG5090122.1 | 77.333 | 525 | 65 | 4 | 1 | 513 | 1456 | 1938 | 0.0 | 771 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1463340 | sp|Q9FR53|TOR_ARATH | 56.654 | 526 | 148 | 11 | 1 | 513 | 1417 | 1875 | 8.52e-171 | 536 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1463340 | A0A371FXB6 | 71.971 | 553 | 90 | 7 | 1 | 513 | 6 | 533 | 0.0 | 741 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1380260 | Msa1463340 | 0.822542 | 2.240403e-53 | -8.615850e-47 |
| Msa1429080 | Msa1463340 | 0.808071 | 3.708979e-50 | -8.615850e-47 |
| Msa0620430 | Msa1463340 | 0.889712 | 1.895480e-73 | -8.615850e-47 |
| Msa0698980 | Msa1463340 | 0.810470 | 1.134320e-50 | -8.615850e-47 |
| Msa0711190 | Msa1463340 | 0.893031 | 9.175791e-75 | -8.615850e-47 |
| Msa0754420 | Msa1463340 | 0.808346 | 3.239951e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1463340 | MtrunA17_Chr5g0393901 | 89.619 | 289 | 22 | 1 | 233 | 513 | 1578 | 1866 | 2.73e-170 | 532 |
| Msa1463340 | MtrunA17_Chr5g0393901 | 100.000 | 175 | 0 | 0 | 1 | 175 | 1406 | 1580 | 1.08e-111 | 364 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1463340 | AT1G50030.1 | 56.654 | 526 | 148 | 11 | 1 | 513 | 1417 | 1875 | 8.66e-172 | 536 |
| Msa1463340 | AT1G50030.2 | 72.318 | 289 | 70 | 3 | 233 | 513 | 1562 | 1848 | 8.46e-133 | 426 |
| Msa1463340 | AT1G50030.2 | 86.429 | 140 | 19 | 0 | 1 | 140 | 1417 | 1556 | 1.48e-72 | 251 |
Find 130 sgRNAs with CRISPR-Local
Find 429 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGGCCAAAGCTTGGCATAAA+TGG | 0.104012 | tig0043159:-5920 | Msa1463340:CDS |
| CTCTCTCACGGCATGGTTAT+TGG | 0.185996 | tig0043159:+1534 | Msa1463340:intergenic |
| CTACTCAGTATGCAAATAAA+TGG | 0.210367 | tig0043159:-5941 | Msa1463340:CDS |
| TCACAAATATGAACTGAATA+TGG | 0.214537 | tig0043159:+6779 | Msa1463340:intergenic |
| GCAGGTTTGGCAGGCACTTT+TGG | 0.229035 | tig0043159:-6647 | Msa1463340:intron |
| TGCTGGATATTTGCTGAAAC+TGG | 0.256915 | tig0043159:-7159 | Msa1463340:CDS |
| GTGAAAACCGTTTGTGTAAC+TGG | 0.271547 | tig0043159:+6166 | Msa1463340:intergenic |
| CTTGAGGTGGGCCATGATAT+TGG | 0.284477 | tig0043159:+6386 | Msa1463340:intergenic |
| GGCAACAGAGCTTGCTGCTT+TGG | 0.287402 | tig0043159:-8714 | Msa1463340:intron |
| AGGCGTTGACGGGAGTTTAC+AGG | 0.295888 | tig0043159:-5772 | Msa1463340:intron |
| GTGATCTATGTAAGGAATAT+TGG | 0.297888 | tig0043159:-9158 | Msa1463340:CDS |
| GTAGTAATGGTACCTTCTTC+AGG | 0.303047 | tig0043159:-8892 | Msa1463340:CDS |
| GCGCAGCTTCTTGCTGAGTT+TGG | 0.309963 | tig0043159:+7197 | Msa1463340:intergenic |
| GATTACTGTACGCTTCCTAT+TGG | 0.334503 | tig0043159:-7671 | Msa1463340:CDS |
| GTGTATCCTGGCAATGATTT+GGG | 0.335684 | tig0043159:+1558 | Msa1463340:intergenic |
| AGTGTATCCTGGCAATGATT+TGG | 0.353602 | tig0043159:+1557 | Msa1463340:intergenic |
| CAAGGGAAAATCCTTTCGTT+AGG | 0.371423 | tig0043159:+1611 | Msa1463340:intergenic |
| CTGGTTGACGAATCCATAAA+AGG | 0.372558 | tig0043159:-6062 | Msa1463340:intron |
| ATGTCTCATTACACTTTAAG+AGG | 0.372652 | tig0043159:-5876 | Msa1463340:CDS |
| AGAGTTGATACAATCACTTT+TGG | 0.380307 | tig0043159:-1515 | Msa1463340:CDS |
| TGCCCATTTATGCCAAGCTT+TGG | 0.408321 | tig0043159:+5917 | Msa1463340:intergenic |
| GTTTACCTCAACATTGCTCT+TGG | 0.411093 | tig0043159:+7583 | Msa1463340:intergenic |
| TACTTTAGTTAAACTTCTAC+AGG | 0.423112 | tig0043159:-6524 | Msa1463340:intron |
| ATGGGTTGTTGCAGTTGTGC+TGG | 0.424807 | tig0043159:-6824 | Msa1463340:intron |
| CCACCATTGGTGCTATTTCA+AGG | 0.425523 | tig0043159:+9112 | Msa1463340:intergenic |
| ACAAACTGTGCTGCAATGTC+AGG | 0.426005 | tig0043159:+5849 | Msa1463340:intergenic |
| GTGGTCACTTTCCCCTGGAC+TGG | 0.430692 | tig0043159:-6081 | Msa1463340:CDS |
| GCCCGTGTTTATCTGAAACT+TGG | 0.441147 | tig0043159:-6113 | Msa1463340:CDS |
| AGCAAGAAGCTGCGCAATGC+AGG | 0.441285 | tig0043159:-7189 | Msa1463340:CDS |
| TGGCAGTGGTCACTTTCCCC+TGG | 0.441653 | tig0043159:-6086 | Msa1463340:CDS |
| TTGTTGCAGTTGTGCTGGAA+TGG | 0.442157 | tig0043159:-6819 | Msa1463340:intron |
| CAAATAAATGGGCCAAAGCT+TGG | 0.443379 | tig0043159:-5929 | Msa1463340:CDS |
| ATGTGGACTCAGCGTATAGA+AGG | 0.446332 | tig0043159:-7608 | Msa1463340:CDS |
| TAACTAAAGTAGATCTTGCT+TGG | 0.447259 | tig0043159:+6536 | Msa1463340:intergenic |
| TGTTGCAGTTGTGCTGGAAT+GGG | 0.447995 | tig0043159:-6818 | Msa1463340:intron |
| TGCTTGGAACATGGGAGAAT+GGG | 0.448994 | tig0043159:-9005 | Msa1463340:CDS |
| GGCCAAAGCTTGGCATAAAT+GGG | 0.449902 | tig0043159:-5919 | Msa1463340:CDS |
| AGCGTAGAGAAGCATTTATT+AGG | 0.450996 | tig0043159:-6315 | Msa1463340:CDS |
| TGAGCGTGCTTACAGCAATA+TGG | 0.454199 | tig0043159:-7822 | Msa1463340:CDS |
| CACAAATATGAACTGAATAT+GGG | 0.459912 | tig0043159:+6780 | Msa1463340:intergenic |
| ATGGATTCGTCAACCAGTCC+AGG | 0.460547 | tig0043159:+6068 | Msa1463340:intergenic |
| TTTAGGCTGCTAATGCTGCT+TGG | 0.462403 | tig0043159:-9021 | Msa1463340:intron |
| TCAGCAACTCTATCTCCAAT+AGG | 0.464185 | tig0043159:+7656 | Msa1463340:intergenic |
| AGATGAAGCTGAAGCAAGAT+GGG | 0.468492 | tig0043159:-7124 | Msa1463340:CDS |
| AGAAGCATTTATTAGGCTAC+AGG | 0.469205 | tig0043159:-6308 | Msa1463340:intron |
| TGTGTAACTGGCTGAATGTT+GGG | 0.472374 | tig0043159:+6178 | Msa1463340:intergenic |
| AAGGGAAAATCCTTTCGTTA+GGG | 0.476987 | tig0043159:+1612 | Msa1463340:intergenic |
| TGAAAGAGCTAGAAAATGTC+TGG | 0.480660 | tig0043159:-8735 | Msa1463340:CDS |
| GAGACACATATTCTGCCATT+TGG | 0.481990 | tig0043159:+8981 | Msa1463340:intergenic |
| AGGCGAGTTACTGCATCAGC+AGG | 0.484196 | tig0043159:+9132 | Msa1463340:intergenic |
| CATGTTTCAATGTCTTCAGC+TGG | 0.485980 | tig0043159:+6601 | Msa1463340:intergenic |
| AATCCTCTCCAAGTGACCAT+TGG | 0.486454 | tig0043159:+6341 | Msa1463340:intergenic |
| AGAGTTAAGTGATCTATGTA+AGG | 0.493318 | tig0043159:-9166 | Msa1463340:CDS |
| TACTCAGTATGCAAATAAAT+GGG | 0.494595 | tig0043159:-5940 | Msa1463340:CDS |
| CTGCTTGGAACATGGGAGAA+TGG | 0.495014 | tig0043159:-9006 | Msa1463340:CDS |
| GAGATGAAGCTGAAGCAAGA+TGG | 0.495147 | tig0043159:-7125 | Msa1463340:CDS |
| TGAAACTTGGCTCCTGGCAG+TGG | 0.496735 | tig0043159:-6100 | Msa1463340:CDS |
| GCAAATTCGAAAGGCGTTGA+CGG | 0.507189 | tig0043159:-5783 | Msa1463340:CDS |
| AGCTACTGCAGAAGTTCAAA+TGG | 0.508312 | tig0043159:-1635 | Msa1463340:CDS |
| ATGGTTATTGGAGTGTATCC+TGG | 0.508970 | tig0043159:+1546 | Msa1463340:intergenic |
| GTTTGTTGTTGCTGCTGTCA+CGG | 0.511129 | tig0043159:-5832 | Msa1463340:CDS |
| TTTATCTGAAACTTGGCTCC+TGG | 0.513103 | tig0043159:-6106 | Msa1463340:CDS |
| TTCTGCCCCAAATCATTGCC+AGG | 0.514073 | tig0043159:-1564 | Msa1463340:CDS |
| CCTGAAAATGTCCAATATCA+TGG | 0.515098 | tig0043159:-6397 | Msa1463340:CDS |
| TTAAAGTTCCAATGGTCACT+TGG | 0.520180 | tig0043159:-6349 | Msa1463340:CDS |
| AGGGGAAAGTGACCACTGCC+AGG | 0.521097 | tig0043159:+6088 | Msa1463340:intergenic |
| TTGTGTAACTGGCTGAATGT+TGG | 0.522606 | tig0043159:+6177 | Msa1463340:intergenic |
| CAAATTCGAAAGGCGTTGAC+GGG | 0.523214 | tig0043159:-5782 | Msa1463340:CDS |
| CATTCAGCCAGTTACACAAA+CGG | 0.526722 | tig0043159:-6173 | Msa1463340:CDS |
| TAGTAATGGTACCTTCTTCA+GGG | 0.527288 | tig0043159:-8891 | Msa1463340:CDS |
| CCTTGCTGCATTAGCTCGAT+GGG | 0.527437 | tig0043159:-9190 | Msa1463340:CDS |
| TTTGTTGTTGCTGCTGTCAC+GGG | 0.528749 | tig0043159:-5831 | Msa1463340:CDS |
| TGCTAATGCTGCTTGGAACA+TGG | 0.529842 | tig0043159:-9014 | Msa1463340:CDS |
| GCCTTGCTGCATTAGCTCGA+TGG | 0.532070 | tig0043159:-9191 | Msa1463340:CDS |
| GCTGGATATTTGCTGAAACT+GGG | 0.533365 | tig0043159:-7158 | Msa1463340:CDS |
| CATGGGAGAATGGGACCAAA+TGG | 0.538428 | tig0043159:-8996 | Msa1463340:CDS |
| TAGAGTTGCTGAAGAGCGAC+GGG | 0.543605 | tig0043159:-7645 | Msa1463340:CDS |
| TGGCCCACCTCAAGTAATGC+TGG | 0.544670 | tig0043159:-6377 | Msa1463340:CDS |
| GATATTTGCTGAAACTGGGG+TGG | 0.546302 | tig0043159:-7154 | Msa1463340:CDS |
| GTTTCAATGTCTTCAGCTGG+TGG | 0.548792 | tig0043159:+6604 | Msa1463340:intergenic |
| CAGTTGTGCTGGAATGGGAG+CGG | 0.551949 | tig0043159:-6813 | Msa1463340:CDS |
| AGTTGTGCTGGAATGGGAGC+GGG | 0.552639 | tig0043159:-6812 | Msa1463340:CDS |
| GAACTTCTGCAGTAGCTCCA+TGG | 0.553999 | tig0043159:+1641 | Msa1463340:intergenic |
| GCAATGCAGGTGTTAGCTGC+TGG | 0.556807 | tig0043159:-7176 | Msa1463340:CDS |
| CTGGATATTTGCTGAAACTG+GGG | 0.562295 | tig0043159:-7157 | Msa1463340:CDS |
| ATAGAGTTGCTGAAGAGCGA+CGG | 0.562877 | tig0043159:-7646 | Msa1463340:CDS |
| ACGGGCAAGGAGAGAACACT+TGG | 0.563268 | tig0043159:+6130 | Msa1463340:intergenic |
| GCAACTATCTGAACTAGAAG+AGG | 0.566343 | tig0043159:-7789 | Msa1463340:intron |
| GCTAATGCTGCTTGGAACAT+GGG | 0.568423 | tig0043159:-9013 | Msa1463340:CDS |
| TGGATTCGTCAACCAGTCCA+GGG | 0.568998 | tig0043159:+6069 | Msa1463340:intergenic |
| TACGCCAGCATTACTTGAGG+TGG | 0.574268 | tig0043159:+6373 | Msa1463340:intergenic |
| TGATAGAACAGCCCTGAAGA+AGG | 0.578293 | tig0043159:+8880 | Msa1463340:intergenic |
| GTTCAAATGGCCCTAACGAA+AGG | 0.581772 | tig0043159:-1622 | Msa1463340:CDS |
| GTTCCAATGGTCACTTGGAG+AGG | 0.583823 | tig0043159:-6344 | Msa1463340:CDS |
| GAAACAAAACTTCGAAGCGC+GGG | 0.585545 | tig0043159:-8941 | Msa1463340:CDS |
| AGTAGTGACGGAAGTAGTAA+TGG | 0.586657 | tig0043159:-8905 | Msa1463340:CDS |
| CCCTTGTTAATATCAATACG+TGG | 0.589199 | tig0043159:-1594 | Msa1463340:CDS |
| GGCGAGTTACTGCATCAGCA+GGG | 0.593423 | tig0043159:+9133 | Msa1463340:intergenic |
| TGATTGTATCAACTCTCTCA+CGG | 0.596904 | tig0043159:+1522 | Msa1463340:intergenic |
| TCGCCTTGAAATAGCACCAA+TGG | 0.596976 | tig0043159:-9115 | Msa1463340:intron |
| GCATGTGCAGCAAATTCGAA+AGG | 0.604366 | tig0043159:-5792 | Msa1463340:CDS |
| AGGAGCCAAGAGCAATGTTG+AGG | 0.609879 | tig0043159:-7588 | Msa1463340:intron |
| TTGACACTATGGTTCAACCA+TGG | 0.610661 | tig0043159:-1658 | Msa1463340:CDS |
| AATTGGGCAAAATCATCCAC+AGG | 0.613670 | tig0043159:-1488 | None:intergenic |
| ATATTTGCTGAAACTGGGGT+GGG | 0.616643 | tig0043159:-7153 | Msa1463340:CDS |
| GTATCAACTCTCTCACGGCA+TGG | 0.616689 | tig0043159:+1527 | Msa1463340:intergenic |
| TGGCGTACTTAAAGTTCCAA+TGG | 0.617493 | tig0043159:-6357 | Msa1463340:CDS |
| AAGTACGCCAGCATTACTTG+AGG | 0.617542 | tig0043159:+6370 | Msa1463340:intergenic |
| AATAATGCCTCGAGTAGTGA+CGG | 0.619781 | tig0043159:-8917 | Msa1463340:CDS |
| TCTATCAGTTCGCAGAGGAA+AGG | 0.621838 | tig0043159:-8864 | Msa1463340:intron |
| AAATGGCAGAATATGTGTCT+CGG | 0.622239 | tig0043159:-8979 | Msa1463340:CDS |
| CAAACTGTGCTGCAATGTCA+GGG | 0.623667 | tig0043159:+5850 | Msa1463340:intergenic |
| GGGCTCTTATTCGCAACATG+TGG | 0.623752 | tig0043159:-7625 | Msa1463340:CDS |
| CCCATCGAGCTAATGCAGCA+AGG | 0.629018 | tig0043159:+9190 | Msa1463340:intergenic |
| GTTTCAGATAAACACGGGCA+AGG | 0.631611 | tig0043159:+6117 | Msa1463340:intergenic |
| GCCAAGTTTCAGATAAACAC+GGG | 0.636919 | tig0043159:+6112 | Msa1463340:intergenic |
| GCCACGTATTGATATTAACA+AGG | 0.638572 | tig0043159:+1593 | Msa1463340:intergenic |
| ACGCCAGCATTACTTGAGGT+GGG | 0.640480 | tig0043159:+6374 | Msa1463340:intergenic |
| CAGCTGAAGACATTGAAACA+TGG | 0.643766 | tig0043159:-6600 | Msa1463340:CDS |
| TGTATCCTGGCAATGATTTG+GGG | 0.649338 | tig0043159:+1559 | Msa1463340:intergenic |
| ACTACTTCCGTCACTACTCG+AGG | 0.650136 | tig0043159:+8910 | Msa1463340:intergenic |
| TATGTGTCTCGGTTAGATGA+TGG | 0.651604 | tig0043159:-8968 | Msa1463340:CDS |
| CCACGTATTGATATTAACAA+GGG | 0.655647 | tig0043159:+1594 | Msa1463340:intergenic |
| TACTGAGACAGAAAATGGAG+AGG | 0.656601 | tig0043159:-7220 | Msa1463340:intron |
| GCGAGTTACTGCATCAGCAG+GGG | 0.659527 | tig0043159:+9134 | Msa1463340:intergenic |
| AGCCAAGTTTCAGATAAACA+CGG | 0.663507 | tig0043159:+6111 | Msa1463340:intergenic |
| TGAAACAAAACTTCGAAGCG+CGG | 0.666150 | tig0043159:-8942 | Msa1463340:CDS |
| GGATTCGTCAACCAGTCCAG+GGG | 0.695129 | tig0043159:+6070 | Msa1463340:intergenic |
| GATGAAGCTGAAGCAAGATG+GGG | 0.702416 | tig0043159:-7123 | Msa1463340:CDS |
| GCTGTTCTATCAGTTCGCAG+AGG | 0.760452 | tig0043159:-8869 | Msa1463340:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTATTTTTTTTAATAAAAAA+AGG | - | tig0043159:8004-8023 | Msa1463340:intron | 0.0% |
| !!! | TATTTTTTTTAATAAAAAAA+GGG | - | tig0043159:8005-8024 | Msa1463340:intron | 0.0% |
| !!! | TATTTTTGATATAATTTGAT+TGG | - | tig0043159:2521-2540 | Msa1463340:intron | 10.0% |
| !! | ATTAATTAATTGACTAAAAA+AGG | - | tig0043159:5112-5131 | Msa1463340:intron | 10.0% |
| !!! | TTTTTTTACTTAAATATTAG+TGG | - | tig0043159:6230-6249 | Msa1463340:intron | 10.0% |
| !!! | AAAAAAAACTACAAATATTT+TGG | + | tig0043159:6682-6701 | Msa1463340:intergenic | 10.0% |
| !! | AAAAGAAGTTATAAAATTAA+TGG | - | tig0043159:6847-6866 | Msa1463340:intron | 10.0% |
| !! | AAATAATAATGAATTATTAG+AGG | - | tig0043159:6990-7009 | Msa1463340:intron | 10.0% |
| !!! | TTTTTTTTTCAAAGATTTAT+AGG | + | tig0043159:7959-7978 | Msa1463340:intergenic | 10.0% |
| !! | AATATAATTAGACATTAAAT+TGG | - | tig0043159:8204-8223 | Msa1463340:intron | 10.0% |
| !!! | AATTTAAGTTATTAGTAGAA+GGG | + | tig0043159:2376-2395 | Msa1463340:intergenic | 15.0% |
| !!! | AAATTTAAGTTATTAGTAGA+AGG | + | tig0043159:2377-2396 | Msa1463340:intergenic | 15.0% |
| !!! | CTACTAATAACTTAAATTTT+TGG | - | tig0043159:2378-2397 | Msa1463340:intron | 15.0% |
| !!! | GCTTATTTTTAATATTGATT+TGG | + | tig0043159:2624-2643 | Msa1463340:intergenic | 15.0% |
| !!! | TTGTAAAATCTAATTTTACT+TGG | + | tig0043159:2770-2789 | Msa1463340:intergenic | 15.0% |
| !!! | TAAACAATTTTCAATGTTAT+CGG | + | tig0043159:3292-3311 | Msa1463340:intergenic | 15.0% |
| !! | AATTTAACATTTGACAAATT+TGG | - | tig0043159:3978-3997 | Msa1463340:intron | 15.0% |
| !! | ATTTAACATTTGACAAATTT+GGG | - | tig0043159:3979-3998 | Msa1463340:intron | 15.0% |
| !!! | TCAATATTATTTTCTGTTAA+AGG | + | tig0043159:4672-4691 | Msa1463340:intergenic | 15.0% |
| !! | ACAACAATTGAAAAAAAATT+AGG | - | tig0043159:5241-5260 | Msa1463340:intron | 15.0% |
| !! | TGATAGAATTAAATTAAAAC+CGG | - | tig0043159:5291-5310 | Msa1463340:intron | 15.0% |
| !! | TATCAAATAAAATGCATTTA+AGG | + | tig0043159:5391-5410 | Msa1463340:intergenic | 15.0% |
| !!! | TTACTTTATTTTTGTTGAAA+AGG | - | tig0043159:5533-5552 | Msa1463340:intron | 15.0% |
| !! | TCTATAACAAAAAATATGAA+AGG | - | tig0043159:5563-5582 | Msa1463340:intron | 15.0% |
| !! | TTTAATAAATCTATTGAGTA+AGG | + | tig0043159:6430-6449 | Msa1463340:intergenic | 15.0% |
| !! | TAGATTTATTAAAATATCCA+TGG | - | tig0043159:6437-6456 | Msa1463340:intron | 15.0% |
| !!! | TTTCAACATTTCATTTTTAT+TGG | - | tig0043159:6498-6517 | Msa1463340:intron | 15.0% |
| !! | TTATATTCTATTGCTTAATA+TGG | + | tig0043159:7182-7201 | Msa1463340:intergenic | 15.0% |
| !! | AGTTAATCTATTATATAGAT+AGG | + | tig0043159:7287-7306 | Msa1463340:intergenic | 15.0% |
| !! | AAAATTGAAAATAATTACCA+TGG | - | tig0043159:7393-7412 | Msa1463340:intron | 15.0% |
| !! | AAATTGAAAATAATTACCAT+GGG | - | tig0043159:7394-7413 | Msa1463340:intron | 15.0% |
| !!! | TTTTTTACTAAAATAGACAA+TGG | - | tig0043159:7900-7919 | Msa1463340:intron | 15.0% |
| !! | TATAGGTTAAACAAATTAAA+AGG | + | tig0043159:7942-7961 | Msa1463340:intergenic | 15.0% |
| !!! | AAACATTGTTTAACTTATAA+AGG | - | tig0043159:7976-7995 | Msa1463340:intron | 15.0% |
| !! | TTATCTATATATCTTTGTAA+AGG | + | tig0043159:8357-8376 | Msa1463340:intergenic | 15.0% |
| !!! | AGATTTTGTATTTGATAAAT+AGG | - | tig0043159:8817-8836 | Msa1463340:intron | 15.0% |
| !!! | TAATTGGACTATTGTTTTTT+TGG | - | tig0043159:1643-1662 | Msa1463340:CDS | 20.0% |
| !! | GTTATCATTGAATATAAAGA+AGG | - | tig0043159:2109-2128 | Msa1463340:intron | 20.0% |
| !! | AAATGAATATAATCAGTACA+AGG | + | tig0043159:2467-2486 | Msa1463340:intergenic | 20.0% |
| !! | CATGCTTAAACATTATTTAT+GGG | - | tig0043159:3195-3214 | Msa1463340:intron | 20.0% |
| !! | ATTGAAAATTGTTTATTCCA+AGG | - | tig0043159:3297-3316 | Msa1463340:intron | 20.0% |
| !! | ATTAGAACAATAACAGAAAT+AGG | + | tig0043159:4947-4966 | Msa1463340:intergenic | 20.0% |
| !!! | TGGACAACAAAATTAAATTT+TGG | - | tig0043159:4999-5018 | Msa1463340:intron | 20.0% |
| !! | ATTATAAATGCATTGTATCA+AGG | + | tig0043159:5141-5160 | Msa1463340:intergenic | 20.0% |
| !!! | ATTTTGGTTTCTTTACTTTT+TGG | + | tig0043159:5614-5633 | Msa1463340:intergenic | 20.0% |
| !! | TTCTAAATCTACATTTATAC+CGG | + | tig0043159:5827-5846 | Msa1463340:intergenic | 20.0% |
| !! | AAACATAAATGAACAATGTT+TGG | - | tig0043159:5933-5952 | Msa1463340:CDS | 20.0% |
| !!! | TTGTAGCAATATTTTTTAAG+AGG | + | tig0043159:6092-6111 | Msa1463340:intergenic | 20.0% |
| !! | TAAAAATGAAATGTTGAAAG+AGG | + | tig0043159:6497-6516 | Msa1463340:intergenic | 20.0% |
| !! | ACATAATAATTCAGAATAGA+AGG | - | tig0043159:6628-6647 | Msa1463340:CDS | 20.0% |
| !! | CATAATAATTCAGAATAGAA+GGG | - | tig0043159:6629-6648 | Msa1463340:CDS | 20.0% |
| !!! | TCCACACAATAAATTATTTT+CGG | + | tig0043159:6656-6675 | Msa1463340:intergenic | 20.0% |
| !! | TAGGTAGATAAAAAATAAGT+AGG | + | tig0043159:6738-6757 | Msa1463340:intergenic | 20.0% |
| !! | AAAAAATAAGATTCGTAACT+AGG | + | tig0043159:6782-6801 | Msa1463340:intergenic | 20.0% |
| !! | ATAAGAAATAAGAATGTGAA+TGG | - | tig0043159:6823-6842 | Msa1463340:intron | 20.0% |
| !! | TAAGAAATAAGAATGTGAAT+GGG | - | tig0043159:6824-6843 | Msa1463340:intron | 20.0% |
| !! | ATATTTGCATCAATGAAAAA+TGG | + | tig0043159:7028-7047 | Msa1463340:intergenic | 20.0% |
| !!! | AACTATTTTTCATGTGAATT+AGG | + | tig0043159:7155-7174 | Msa1463340:intergenic | 20.0% |
| !! | AATTGAAAATAATTACCATG+GGG | - | tig0043159:7395-7414 | Msa1463340:intron | 20.0% |
| !!! | AGTGTTTGTAGTATAAATTT+TGG | + | tig0043159:7453-7472 | Msa1463340:intergenic | 20.0% |
| !! | AGAAAAGAAAGATAGTTTAA+AGG | - | tig0043159:7603-7622 | Msa1463340:CDS | 20.0% |
| !!! | AGTTTTGTTACATTCTTAAT+TGG | - | tig0043159:8505-8524 | Msa1463340:intron | 20.0% |
| !!! | TTTTAAATCTCACAATTTAC+TGG | - | tig0043159:8573-8592 | Msa1463340:intron | 20.0% |
| !! | TTTAAATCTCACAATTTACT+GGG | - | tig0043159:8574-8593 | Msa1463340:intron | 20.0% |
| !!! | ACTTCATAATAGATTTTGTT+AGG | - | tig0043159:8738-8757 | Msa1463340:CDS | 20.0% |
| !! | GTAAAATAGCTTATATTTCT+TGG | - | tig0043159:8786-8805 | Msa1463340:intron | 20.0% |
| !!! | ATACTTTTGTTTATGTGTGA+TGG | - | tig0043159:1603-1622 | Msa1463340:CDS | 25.0% |
| !!! | GACTATTGTTTTTTTGGTTT+AGG | - | tig0043159:1649-1668 | Msa1463340:CDS | 25.0% |
| !! | GATACTTTTATCACTGTTTT+TGG | - | tig0043159:2138-2157 | Msa1463340:intron | 25.0% |
| !!! | TTTTATCACTGTTTTTGGAA+AGG | - | tig0043159:2143-2162 | Msa1463340:intron | 25.0% |
| !!! | TTTATCACTGTTTTTGGAAA+GGG | - | tig0043159:2144-2163 | Msa1463340:intron | 25.0% |
| ! | ACTGGAGAAAATACAAAATA+TGG | + | tig0043159:2205-2224 | Msa1463340:intergenic | 25.0% |
| !!! | TTTTGTGGTGTTATTTTCTA+CGG | + | tig0043159:2683-2702 | Msa1463340:intergenic | 25.0% |
| ! | AAAACATCCATAATAAAGCT+AGG | - | tig0043159:2732-2751 | Msa1463340:intron | 25.0% |
| ! | GCATGCTTAAACATTATTTA+TGG | - | tig0043159:3194-3213 | Msa1463340:intron | 25.0% |
| ! | TTATTCCAAGGTCATAATAT+TGG | - | tig0043159:3309-3328 | Msa1463340:intron | 25.0% |
| ! | ATAATCCAATATTATGACCT+TGG | + | tig0043159:3317-3336 | Msa1463340:intergenic | 25.0% |
| ! | AAGGTCATAATATTGGATTA+TGG | - | tig0043159:3316-3335 | Msa1463340:intron | 25.0% |
| ! | TTTAGACTGAATGATAATTG+CGG | + | tig0043159:3392-3411 | Msa1463340:intergenic | 25.0% |
| !!! | AGTAAATATTTGCTGGTTTT+CGG | - | tig0043159:3746-3765 | Msa1463340:intron | 25.0% |
| ! | TTCATTCAACGAAACATTAT+AGG | - | tig0043159:3773-3792 | Msa1463340:intron | 25.0% |
| ! | CACAAATATGAACTGAATAT+GGG | + | tig0043159:3910-3929 | Msa1463340:intergenic | 25.0% |
| ! | TCACAAATATGAACTGAATA+TGG | + | tig0043159:3911-3930 | Msa1463340:intergenic | 25.0% |
| ! | TACTTTAGTTAAACTTCTAC+AGG | - | tig0043159:4163-4182 | Msa1463340:intron | 25.0% |
| ! | GAACGAAAATAAATTGAGTA+TGG | + | tig0043159:4248-4267 | Msa1463340:intergenic | 25.0% |
| !! | ATGACAACTTAAACCTTTTA+TGG | + | tig0043159:4641-4660 | Msa1463340:intergenic | 25.0% |
| ! | TACTCAGTATGCAAATAAAT+GGG | - | tig0043159:4747-4766 | Msa1463340:intron | 25.0% |
| ! | AAATTGAAGGGATATTTATG+TGG | + | tig0043159:4980-4999 | Msa1463340:intergenic | 25.0% |
| ! | ACATAAATATCCCTTCAATT+TGG | - | tig0043159:4979-4998 | Msa1463340:intron | 25.0% |
| !!! | ATTTTGTTGTCCAAATTGAA+GGG | + | tig0043159:4992-5011 | Msa1463340:intergenic | 25.0% |
| !!! | AATTTTGTTGTCCAAATTGA+AGG | + | tig0043159:4993-5012 | Msa1463340:intergenic | 25.0% |
| !! | TTTAAGTACACACTCAATTT+TGG | - | tig0043159:5169-5188 | Msa1463340:intron | 25.0% |
| !!! | TTCAACTTTTTTTAGACAAC+CGG | + | tig0043159:5313-5332 | Msa1463340:intergenic | 25.0% |
| ! | AACCTCTATTTATTTGCTTA+GGG | + | tig0043159:5346-5365 | Msa1463340:intergenic | 25.0% |
| ! | AAACCTCTATTTATTTGCTT+AGG | + | tig0043159:5347-5366 | Msa1463340:intergenic | 25.0% |
| ! | AAGAGATGTAAGGAATTAAA+CGG | - | tig0043159:5500-5519 | Msa1463340:intron | 25.0% |
| ! | GTAAAGAAACCAAAATTTCA+AGG | - | tig0043159:5618-5637 | Msa1463340:intron | 25.0% |
| ! | ATAAGAACCAAGAATTTATC+CGG | - | tig0043159:5805-5824 | Msa1463340:CDS | 25.0% |
| ! | ATTTATACCGGATAAATTCT+TGG | + | tig0043159:5815-5834 | Msa1463340:intergenic | 25.0% |
| ! | TACTGTGTAACCAAAAAAAA+TGG | - | tig0043159:6182-6201 | Msa1463340:CDS | 25.0% |
| ! | ACTGTGTAACCAAAAAAAAT+GGG | - | tig0043159:6183-6202 | Msa1463340:CDS | 25.0% |
| !!! | AGTAAATTCCCCATTTTTTT+TGG | + | tig0043159:6195-6214 | Msa1463340:intergenic | 25.0% |
| ! | AATAAATCTATTGAGTAAGG+AGG | + | tig0043159:6427-6446 | Msa1463340:intergenic | 25.0% |
| ! | ACCGAAAATAATTTATTGTG+TGG | - | tig0043159:6652-6671 | Msa1463340:intron | 25.0% |
| !! | AGTTAGAAAGAAGTACATAT+AGG | - | tig0043159:6890-6909 | Msa1463340:intron | 25.0% |
| ! | AAGAAAGATAGTTTAAAGGT+TGG | - | tig0043159:7607-7626 | Msa1463340:CDS | 25.0% |
| ! | ATAGTGTGCTTAAATAGATT+AGG | + | tig0043159:7845-7864 | Msa1463340:intergenic | 25.0% |
| ! | TATTTAACTCATAAGTGCAA+TGG | - | tig0043159:7876-7895 | Msa1463340:intron | 25.0% |
| ! | TAGACATTAAATTGGTATAG+TGG | - | tig0043159:8212-8231 | Msa1463340:intron | 25.0% |
| !!! | GATAATAGTCTACTTTTCAA+TGG | - | tig0043159:8372-8391 | Msa1463340:intron | 25.0% |
| ! | TTAAATCTCACAATTTACTG+GGG | - | tig0043159:8575-8594 | Msa1463340:intron | 25.0% |
| !! | CTATATTTGAGTTCTGTTTA+TGG | - | tig0043159:8619-8638 | Msa1463340:intron | 25.0% |
| ! | TGAAGTCAGAAACATATTAT+TGG | + | tig0043159:8724-8743 | Msa1463340:intergenic | 25.0% |
| AGAGTTAAGTGATCTATGTA+AGG | - | tig0043159:1521-1540 | Msa1463340:CDS | 30.0% | |
| GTGATCTATGTAAGGAATAT+TGG | - | tig0043159:1529-1548 | Msa1463340:CDS | 30.0% | |
| ! | AAAAGTATAAAACCCACCAT+TGG | + | tig0043159:1591-1610 | Msa1463340:intergenic | 30.0% |
| TACAGTGATTCCTATCTATT+TGG | - | tig0043159:1903-1922 | Msa1463340:intron | 30.0% | |
| ! | CTTCGTTAAATTTTTCGTAC+AGG | - | tig0043159:2004-2023 | Msa1463340:intron | 30.0% |
| !!! | TTATCACTGTTTTTGGAAAG+GGG | - | tig0043159:2145-2164 | Msa1463340:intron | 30.0% |
| AAAATGATGTCAAATCTGTG+TGG | + | tig0043159:2230-2249 | Msa1463340:intergenic | 30.0% | |
| ATAAAAGTCAAATTGCGGAA+GGG | + | tig0043159:2431-2450 | Msa1463340:intergenic | 30.0% | |
| TCAGCATAAAAGTCAAATTG+CGG | + | tig0043159:2436-2455 | Msa1463340:intergenic | 30.0% | |
| GCATACAAAGTCATCAAAAT+CGG | - | tig0043159:2543-2562 | Msa1463340:intron | 30.0% | |
| TAAGCAAAATCACAAAAGCA+TGG | - | tig0043159:2639-2658 | Msa1463340:intron | 30.0% | |
| ! | AAGCAAAATCACAAAAGCAT+GGG | - | tig0043159:2640-2659 | Msa1463340:intron | 30.0% |
| !!! | GTGTTATTTTCTACGGATTT+TGG | + | tig0043159:2676-2695 | Msa1463340:intergenic | 30.0% |
| ! | TTACCTTACTGTAGATTTTG+TGG | + | tig0043159:2698-2717 | Msa1463340:intergenic | 30.0% |
| !! | GCAGATAAATCAGCTATTTT+GGG | + | tig0043159:2795-2814 | Msa1463340:intergenic | 30.0% |
| ! | TGCAGATAAATCAGCTATTT+TGG | + | tig0043159:2796-2815 | Msa1463340:intergenic | 30.0% |
| ATAGTGTTACATCAAGTGAA+TGG | + | tig0043159:2956-2975 | Msa1463340:intergenic | 30.0% | |
| TAACACTATTACCGTAACTT+GGG | - | tig0043159:2967-2986 | Msa1463340:intron | 30.0% | |
| ! | TATTTATGGGTGATTTTCTG+AGG | - | tig0043159:3208-3227 | Msa1463340:intron | 30.0% |
| ATTAATTAATGACCTCCTGT+AGG | - | tig0043159:3365-3384 | Msa1463340:intron | 30.0% | |
| AGTCAATGCAAAACAAAAAG+TGG | - | tig0043159:3430-3449 | Msa1463340:intron | 30.0% | |
| ATTGATACTGAGACAGAAAA+TGG | - | tig0043159:3462-3481 | Msa1463340:intron | 30.0% | |
| AACACAGAAACCAATTGTTT+GGG | + | tig0043159:3629-3648 | Msa1463340:intergenic | 30.0% | |
| AAACACAGAAACCAATTGTT+TGG | + | tig0043159:3630-3649 | Msa1463340:intergenic | 30.0% | |
| ! | AATTGGTTTCTGTGTTTGAA+GGG | - | tig0043159:3633-3652 | Msa1463340:intron | 30.0% |
| !!! | GCAATTGAGAGAGTTTTTTT+TGG | + | tig0043159:3669-3688 | Msa1463340:intergenic | 30.0% |
| AAACCAGCAAATATTTACTC+TGG | + | tig0043159:3745-3764 | Msa1463340:intergenic | 30.0% | |
| TAACTAAAGTAGATCTTGCT+TGG | + | tig0043159:4154-4173 | Msa1463340:intergenic | 30.0% | |
| AAATTCCATAGCCAAATTCT+AGG | + | tig0043159:4480-4499 | Msa1463340:intergenic | 30.0% | |
| CTACTCAGTATGCAAATAAA+TGG | - | tig0043159:4746-4765 | Msa1463340:intron | 30.0% | |
| ATGTCTCATTACACTTTAAG+AGG | - | tig0043159:4811-4830 | Msa1463340:intron | 30.0% | |
| AGTCAGGAAATACAAAAACA+AGG | + | tig0043159:5036-5055 | Msa1463340:intergenic | 30.0% | |
| GGTTGTCTAAAAAAAGTTGA+AGG | - | tig0043159:5312-5331 | Msa1463340:intron | 30.0% | |
| CCTTTCTAACATATAAGAGA+TGG | + | tig0043159:5874-5893 | Msa1463340:intergenic | 30.0% | |
| CCATCTCTTATATGTTAGAA+AGG | - | tig0043159:5871-5890 | Msa1463340:CDS | 30.0% | |
| !! | AGTAGTGAATCATTTTTCCA+TGG | - | tig0043159:5906-5925 | Msa1463340:CDS | 30.0% |
| TTCATTTATGTTTGTGACCA+TGG | + | tig0043159:5926-5945 | Msa1463340:intergenic | 30.0% | |
| !! | TTTTAAGAGGTATGCTACTA+TGG | + | tig0043159:6079-6098 | Msa1463340:intergenic | 30.0% |
| TATGAAGAAGCTTCCTAAAT+GGG | - | tig0043159:6154-6173 | Msa1463340:CDS | 30.0% | |
| CTGTGTAACCAAAAAAAATG+GGG | - | tig0043159:6184-6203 | Msa1463340:CDS | 30.0% | |
| !!! | TTTTAGAAGTGTCACATGTT+CGG | - | tig0043159:6350-6369 | Msa1463340:CDS | 30.0% |
| TATTAAAATATCCATGGTGC+TGG | - | tig0043159:6443-6462 | Msa1463340:intron | 30.0% | |
| !!! | CACCATTTTTTTACAGGTTT+CGG | - | tig0043159:7077-7096 | Msa1463340:intron | 30.0% |
| !! | TTGGAGAAAGTGTTAATCAA+TGG | - | tig0043159:7424-7443 | Msa1463340:intron | 30.0% |
| !! | TAATTTGCTTGATGTTCATG+TGG | - | tig0043159:7742-7761 | Msa1463340:intron | 30.0% |
| GGAGGAAATATGAAATCTAT+TGG | - | tig0043159:7763-7782 | Msa1463340:intron | 30.0% | |
| !!! | TATTGGTTTTTACTTGACGT+AGG | - | tig0043159:7780-7799 | Msa1463340:intron | 30.0% |
| AAGACAATGGGTCTAAAAAT+AGG | - | tig0043159:8055-8074 | Msa1463340:intron | 30.0% | |
| !!! | ATGCATTAGTCTTTTGTTGT+AGG | - | tig0043159:8164-8183 | Msa1463340:intron | 30.0% |
| ACATTAAATTGGTATAGTGG+AGG | - | tig0043159:8215-8234 | Msa1463340:intron | 30.0% | |
| ! | CATTAAATTGGTATAGTGGA+GGG | - | tig0043159:8216-8235 | Msa1463340:intron | 30.0% |
| ATGCAAGCATTATGCATATA+TGG | + | tig0043159:8317-8336 | Msa1463340:intergenic | 30.0% | |
| ATATGCATAATGCTTGCATA+TGG | - | tig0043159:8318-8337 | Msa1463340:intron | 30.0% | |
| !! | TCTTTTCAGCAATGCTTTTT+TGG | - | tig0043159:8425-8444 | Msa1463340:intron | 30.0% |
| ! | AATGCTATTTGTCATACTGA+CGG | + | tig0043159:8664-8683 | Msa1463340:intergenic | 30.0% |
| GATAAATAGGAATGCTTTCT+TGG | - | tig0043159:8830-8849 | Msa1463340:intron | 30.0% | |
| ! | CTTTACATGAGTTTTCTACA+TGG | - | tig0043159:8918-8937 | Msa1463340:CDS | 30.0% |
| TGCTTAAGAATCAAAGGAAA+AGG | + | tig0043159:8981-9000 | Msa1463340:intergenic | 30.0% | |
| ! | CCACGTATTGATATTAACAA+GGG | + | tig0043159:9096-9115 | Msa1463340:intergenic | 30.0% |
| !!! | AGAGTTGATACAATCACTTT+TGG | - | tig0043159:9172-9191 | Msa1463340:CDS | 30.0% |
| !!! | AATCACTTTTGGTTCGAATT+GGG | - | tig0043159:9183-9202 | Msa1463340:CDS | 30.0% |
| !! | CATTTTCTACTGGCTGTAAT+TGG | - | tig0043159:1627-1646 | Msa1463340:CDS | 35.0% |
| AAATGGCAGAATATGTGTCT+CGG | - | tig0043159:1708-1727 | Msa1463340:intron | 35.0% | |
| TAGTAATGGTACCTTCTTCA+GGG | - | tig0043159:1796-1815 | Msa1463340:intron | 35.0% | |
| CATCATACTGCCAAATAGAT+AGG | + | tig0043159:1916-1935 | Msa1463340:intergenic | 35.0% | |
| TGAAAGAGCTAGAAAATGTC+TGG | - | tig0043159:1952-1971 | Msa1463340:intron | 35.0% | |
| CTCTAACTAACATGCAAGAT+TGG | + | tig0043159:2329-2348 | Msa1463340:intergenic | 35.0% | |
| AGTTATTAGTAGAAGGGCTT+GGG | + | tig0043159:2370-2389 | Msa1463340:intergenic | 35.0% | |
| AAGTTATTAGTAGAAGGGCT+TGG | + | tig0043159:2371-2390 | Msa1463340:intergenic | 35.0% | |
| CATAAAAGTCAAATTGCGGA+AGG | + | tig0043159:2432-2451 | Msa1463340:intergenic | 35.0% | |
| ! | TTTGGTGTATTGCAGATGAT+TGG | + | tig0043159:2606-2625 | Msa1463340:intergenic | 35.0% |
| ! | AGCAAAATCACAAAAGCATG+GGG | - | tig0043159:2641-2660 | Msa1463340:intron | 35.0% |
| ACACCACAAAATCTACAGTA+AGG | - | tig0043159:2692-2711 | Msa1463340:intron | 35.0% | |
| !! | TGTCACTCCTAGCTTTATTA+TGG | + | tig0043159:2742-2761 | Msa1463340:intergenic | 35.0% |
| GTAACACTATTACCGTAACT+TGG | - | tig0043159:2966-2985 | Msa1463340:intron | 35.0% | |
| AAGAAGATAAGCCCAAGTTA+CGG | + | tig0043159:2981-3000 | Msa1463340:intergenic | 35.0% | |
| ! | AGAGAGATTATGTTGATGAG+TGG | - | tig0043159:3341-3360 | Msa1463340:intron | 35.0% |
| ! | CAATTGGTTTCTGTGTTTGA+AGG | - | tig0043159:3632-3651 | Msa1463340:intron | 35.0% |
| ATGCCAGAGTAAATATTTGC+TGG | - | tig0043159:3739-3758 | Msa1463340:intron | 35.0% | |
| AATTTAGTGCCTATGGCTAT+GGG | - | tig0043159:3845-3864 | Msa1463340:intron | 35.0% | |
| !! | AAAAAGCATCACAAAGTCAG+AGG | + | tig0043159:4019-4038 | Msa1463340:intergenic | 35.0% |
| ! | TCTGACTTTGTGATGCTTTT+TGG | - | tig0043159:4018-4037 | Msa1463340:intron | 35.0% |
| CTTCTCTTTGCAGAAAAAGT+GGG | - | tig0043159:4120-4139 | Msa1463340:intron | 35.0% | |
| GAAAGAAACCATCATATACC+AGG | + | tig0043159:4202-4221 | Msa1463340:intergenic | 35.0% | |
| !! | CATTTTCAGGAGTTATCTCA+GGG | + | tig0043159:4280-4299 | Msa1463340:intergenic | 35.0% |
| !! | ACATTTTCAGGAGTTATCTC+AGG | + | tig0043159:4281-4300 | Msa1463340:intergenic | 35.0% |
| ! | CCATGATATTGGACATTTTC+AGG | + | tig0043159:4293-4312 | Msa1463340:intergenic | 35.0% |
| CCTGAAAATGTCCAATATCA+TGG | - | tig0043159:4290-4309 | Msa1463340:intron | 35.0% | |
| TTAAAGTTCCAATGGTCACT+TGG | - | tig0043159:4338-4357 | Msa1463340:intron | 35.0% | |
| !! | AGCGTAGAGAAGCATTTATT+AGG | - | tig0043159:4372-4391 | Msa1463340:intron | 35.0% |
| !! | AGAAGCATTTATTAGGCTAC+AGG | - | tig0043159:4379-4398 | Msa1463340:intron | 35.0% |
| GCTTTATCTTGCCTAGAATT+TGG | - | tig0043159:4466-4485 | Msa1463340:intron | 35.0% | |
| AGCCAAGTTTCAGATAAACA+CGG | + | tig0043159:4579-4598 | Msa1463340:intergenic | 35.0% | |
| TGAAGGGATATTTATGTGGA+TGG | + | tig0043159:4976-4995 | Msa1463340:intergenic | 35.0% | |
| GACCCTAAGCAAATAAATAG+AGG | - | tig0043159:5341-5360 | Msa1463340:intron | 35.0% | |
| !! | CTGCTTTTGAAAGAGATGTA+AGG | - | tig0043159:5490-5509 | Msa1463340:intron | 35.0% |
| ! | GAGGAAGATCCTTGAAATTT+TGG | + | tig0043159:5630-5649 | Msa1463340:intergenic | 35.0% |
| GATCTTACGCAAAAATCAGA+GGG | - | tig0043159:5657-5676 | Msa1463340:intron | 35.0% | |
| CTATGAAGAAGCTTCCTAAA+TGG | - | tig0043159:6153-6172 | Msa1463340:CDS | 35.0% | |
| ATGAAGAAGCTTCCTAAATG+GGG | - | tig0043159:6155-6174 | Msa1463340:CDS | 35.0% | |
| ACACAGTAAATTCCCCATTT+AGG | + | tig0043159:6170-6189 | Msa1463340:intergenic | 35.0% | |
| CGCACATTAAACTGATATAG+TGG | - | tig0043159:6279-6298 | Msa1463340:intron | 35.0% | |
| ! | CAAGATTTGTTTGGTCTGTT+AGG | - | tig0043159:6373-6392 | Msa1463340:CDS | 35.0% |
| CGAAACCTGTAAAAAAATGG+TGG | + | tig0043159:7079-7098 | Msa1463340:intergenic | 35.0% | |
| GTCCGAAACCTGTAAAAAAA+TGG | + | tig0043159:7082-7101 | Msa1463340:intergenic | 35.0% | |
| TCCTTTATGCAAGAAGACAA+TGG | - | tig0043159:8042-8061 | Msa1463340:intron | 35.0% | |
| CCTTTATGCAAGAAGACAAT+GGG | - | tig0043159:8043-8062 | Msa1463340:intron | 35.0% | |
| ! | AACTTTAAAGAGTCTTGCAC+TGG | - | tig0043159:8474-8493 | Msa1463340:intron | 35.0% |
| !! | CAAACTAGAGTGCTGATAAT+TGG | - | tig0043159:8549-8568 | Msa1463340:intron | 35.0% |
| GAAAGCAATGTGAAACAAGT+GGG | + | tig0043159:8702-8721 | Msa1463340:intergenic | 35.0% | |
| TCAGCATGCTTAAGAATCAA+AGG | + | tig0043159:8987-9006 | Msa1463340:intergenic | 35.0% | |
| ! | TTCTTCGACTTTTGACACTA+TGG | - | tig0043159:9018-9037 | Msa1463340:CDS | 35.0% |
| AAGGGAAAATCCTTTCGTTA+GGG | + | tig0043159:9078-9097 | Msa1463340:intergenic | 35.0% | |
| CCCTTGTTAATATCAATACG+TGG | - | tig0043159:9093-9112 | Msa1463340:intron | 35.0% | |
| ! | GCCACGTATTGATATTAACA+AGG | + | tig0043159:9097-9116 | Msa1463340:intergenic | 35.0% |
| TGATTGTATCAACTCTCTCA+CGG | + | tig0043159:9168-9187 | Msa1463340:intergenic | 35.0% | |
| !!! | CAATCACTTTTGGTTCGAAT+TGG | - | tig0043159:9182-9201 | Msa1463340:CDS | 35.0% |
| CTTGAAATAGCACCAATGGT+GGG | - | tig0043159:1576-1595 | Msa1463340:CDS | 40.0% | |
| !!! | GTGTGATGGACATTTTCTAC+TGG | - | tig0043159:1617-1636 | Msa1463340:CDS | 40.0% |
| GAGACACATATTCTGCCATT+TGG | + | tig0043159:1709-1728 | Msa1463340:intergenic | 40.0% | |
| TATGTGTCTCGGTTAGATGA+TGG | - | tig0043159:1719-1738 | Msa1463340:intron | 40.0% | |
| TGAAACAAAACTTCGAAGCG+CGG | - | tig0043159:1745-1764 | Msa1463340:intron | 40.0% | |
| AATAATGCCTCGAGTAGTGA+CGG | - | tig0043159:1770-1789 | Msa1463340:intron | 40.0% | |
| ! | AGTAGTGACGGAAGTAGTAA+TGG | - | tig0043159:1782-1801 | Msa1463340:intron | 40.0% |
| GTAGTAATGGTACCTTCTTC+AGG | - | tig0043159:1795-1814 | Msa1463340:intron | 40.0% | |
| GATAACACGCAAAATGACTG+AGG | + | tig0043159:2095-2114 | Msa1463340:intergenic | 40.0% | |
| !!! | CTGTTTTTGGAAAGGGGATA+TGG | - | tig0043159:2151-2170 | Msa1463340:intron | 40.0% |
| TAACGTAAGCACTAAGCACA+TGG | + | tig0043159:2262-2281 | Msa1463340:intergenic | 40.0% | |
| AATTGCGGAAGGGTTATGTA+CGG | + | tig0043159:2421-2440 | Msa1463340:intergenic | 40.0% | |
| GTGTATTGCAGATGATTGGT+AGG | + | tig0043159:2602-2621 | Msa1463340:intergenic | 40.0% | |
| GAGGTGCAAACAAATTGTGA+AGG | + | tig0043159:2828-2847 | Msa1463340:intergenic | 40.0% | |
| GCAACTATCTGAACTAGAAG+AGG | - | tig0043159:2898-2917 | Msa1463340:intron | 40.0% | |
| CGTACAGTAATCAATCACCT+GGG | + | tig0043159:3008-3027 | Msa1463340:intergenic | 40.0% | |
| GATTACTGTACGCTTCCTAT+TGG | - | tig0043159:3016-3035 | Msa1463340:intron | 40.0% | |
| TCAGCAACTCTATCTCCAAT+AGG | + | tig0043159:3034-3053 | Msa1463340:intergenic | 40.0% | |
| GTTTACCTCAACATTGCTCT+TGG | + | tig0043159:3107-3126 | Msa1463340:intergenic | 40.0% | |
| ACATTTACACAGTTTCCCCA+TGG | - | tig0043159:3161-3180 | Msa1463340:intron | 40.0% | |
| GCGTCTTTCAAGACTTCAAA+TGG | - | tig0043159:3241-3260 | Msa1463340:intron | 40.0% | |
| AATGATAATTGCGGACCTAC+AGG | + | tig0043159:3383-3402 | Msa1463340:intergenic | 40.0% | |
| TACTGAGACAGAAAATGGAG+AGG | - | tig0043159:3467-3486 | Msa1463340:intron | 40.0% | |
| ! | TGCTGGATATTTGCTGAAAC+TGG | - | tig0043159:3528-3547 | Msa1463340:intron | 40.0% |
| ! | GCTGGATATTTGCTGAAACT+GGG | - | tig0043159:3529-3548 | Msa1463340:intron | 40.0% |
| ! | CTGGATATTTGCTGAAACTG+GGG | - | tig0043159:3530-3549 | Msa1463340:intron | 40.0% |
| ! | ATATTTGCTGAAACTGGGGT+GGG | - | tig0043159:3534-3553 | Msa1463340:intron | 40.0% |
| AGATGAAGCTGAAGCAAGAT+GGG | - | tig0043159:3563-3582 | Msa1463340:intron | 40.0% | |
| ! | TTTCTGTGTTTGAAGGGTGT+TGG | - | tig0043159:3639-3658 | Msa1463340:intron | 40.0% |
| AATCTTCGAACCCTTTCAGA+TGG | - | tig0043159:3800-3819 | Msa1463340:intron | 40.0% | |
| ! | GAGGTTTGTTCCATCTGAAA+GGG | + | tig0043159:3813-3832 | Msa1463340:intergenic | 40.0% |
| ! | AGAGGTTTGTTCCATCTGAA+AGG | + | tig0043159:3814-3833 | Msa1463340:intergenic | 40.0% |
| CTAAATTGGCAAGACTTCAG+AGG | + | tig0043159:3832-3851 | Msa1463340:intergenic | 40.0% | |
| TCTTGCCAATTTAGTGCCTA+TGG | - | tig0043159:3838-3857 | Msa1463340:intron | 40.0% | |
| CATAGCCATAGGCACTAAAT+TGG | + | tig0043159:3846-3865 | Msa1463340:intergenic | 40.0% | |
| CAATTTAGTGCCTATGGCTA+TGG | - | tig0043159:3844-3863 | Msa1463340:intron | 40.0% | |
| !! | ACTTTGTGATGCTTTTTGGC+AGG | - | tig0043159:4022-4041 | Msa1463340:intron | 40.0% |
| CATGTTTCAATGTCTTCAGC+TGG | + | tig0043159:4089-4108 | Msa1463340:intergenic | 40.0% | |
| CAGCTGAAGACATTGAAACA+TGG | - | tig0043159:4087-4106 | Msa1463340:intron | 40.0% | |
| GCTTCTCTTTGCAGAAAAAG+TGG | - | tig0043159:4119-4138 | Msa1463340:intron | 40.0% | |
| TGGCGTACTTAAAGTTCCAA+TGG | - | tig0043159:4330-4349 | Msa1463340:intron | 40.0% | |
| TCAAGTGCATGTTACACAAG+AGG | + | tig0043159:4416-4435 | Msa1463340:intergenic | 40.0% | |
| TCTAGGCAAGATAAAGCAGA+TGG | + | tig0043159:4463-4482 | Msa1463340:intergenic | 40.0% | |
| TCTTGCCTAGAATTTGGCTA+TGG | - | tig0043159:4472-4491 | Msa1463340:intron | 40.0% | |
| TGTGTAACTGGCTGAATGTT+GGG | + | tig0043159:4512-4531 | Msa1463340:intergenic | 40.0% | |
| TTGTGTAACTGGCTGAATGT+TGG | + | tig0043159:4513-4532 | Msa1463340:intergenic | 40.0% | |
| CATTCAGCCAGTTACACAAA+CGG | - | tig0043159:4514-4533 | Msa1463340:intron | 40.0% | |
| GTGAAAACCGTTTGTGTAAC+TGG | + | tig0043159:4524-4543 | Msa1463340:intergenic | 40.0% | |
| ! | ACACAAACGGTTTTCACAAG+TGG | - | tig0043159:4527-4546 | Msa1463340:intron | 40.0% |
| GCCAAGTTTCAGATAAACAC+GGG | + | tig0043159:4578-4597 | Msa1463340:intergenic | 40.0% | |
| ! | TTTATCTGAAACTTGGCTCC+TGG | - | tig0043159:4581-4600 | Msa1463340:intron | 40.0% |
| CTGGTTGACGAATCCATAAA+AGG | - | tig0043159:4625-4644 | Msa1463340:intron | 40.0% | |
| CAAATAAATGGGCCAAAGCT+TGG | - | tig0043159:4758-4777 | Msa1463340:intron | 40.0% | |
| TTTCCTGACTCAAAGACACT+AGG | - | tig0043159:5046-5065 | Msa1463340:intron | 40.0% | |
| ATTCCTAGTGTCTTTGAGTC+AGG | + | tig0043159:5052-5071 | Msa1463340:intergenic | 40.0% | |
| !! | CGCACGGGTTTGTTAAAATA+CGG | - | tig0043159:5075-5094 | Msa1463340:intron | 40.0% |
| ATTTCAAGGATCTTCCTCAG+AGG | - | tig0043159:5632-5651 | Msa1463340:intron | 40.0% | |
| GGATCTTACGCAAAAATCAG+AGG | - | tig0043159:5656-5675 | Msa1463340:intron | 40.0% | |
| ! | CATGTTCGGCAAGATTTGTT+TGG | - | tig0043159:6364-6383 | Msa1463340:CDS | 40.0% |
| !!! | ACGAGCCACCATTTTTTTAC+AGG | - | tig0043159:7071-7090 | Msa1463340:intron | 40.0% |
| AATTACCATGGGGAGTTGTT+TGG | - | tig0043159:7405-7424 | Msa1463340:intron | 40.0% | |
| TTTGCTTGATGTTCATGTGG+AGG | - | tig0043159:7745-7764 | Msa1463340:intron | 40.0% | |
| CCCATTGTCTTCTTGCATAA+AGG | + | tig0043159:8046-8065 | Msa1463340:intergenic | 40.0% | |
| TTTGCAGCATCGTTTAAGCA+TGG | + | tig0043159:8533-8552 | Msa1463340:intergenic | 40.0% | |
| GGAAAGCAATGTGAAACAAG+TGG | + | tig0043159:8703-8722 | Msa1463340:intergenic | 40.0% | |
| ! | GTTTTCTACATGGACTCTTC+TGG | - | tig0043159:8928-8947 | Msa1463340:CDS | 40.0% |
| TTGACACTATGGTTCAACCA+TGG | - | tig0043159:9029-9048 | Msa1463340:intron | 40.0% | |
| AGCTACTGCAGAAGTTCAAA+TGG | - | tig0043159:9052-9071 | Msa1463340:intron | 40.0% | |
| CAAGGGAAAATCCTTTCGTT+AGG | + | tig0043159:9079-9098 | Msa1463340:intergenic | 40.0% | |
| TGTATCCTGGCAATGATTTG+GGG | + | tig0043159:9131-9150 | Msa1463340:intergenic | 40.0% | |
| GTGTATCCTGGCAATGATTT+GGG | + | tig0043159:9132-9151 | Msa1463340:intergenic | 40.0% | |
| AGTGTATCCTGGCAATGATT+TGG | + | tig0043159:9133-9152 | Msa1463340:intergenic | 40.0% | |
| ATGGTTATTGGAGTGTATCC+TGG | + | tig0043159:9144-9163 | Msa1463340:intergenic | 40.0% | |
| TCGCCTTGAAATAGCACCAA+TGG | - | tig0043159:1572-1591 | Msa1463340:CDS | 45.0% | |
| !! | CCACCATTGGTGCTATTTCA+AGG | + | tig0043159:1578-1597 | Msa1463340:intergenic | 45.0% |
| CCTTGAAATAGCACCAATGG+TGG | - | tig0043159:1575-1594 | Msa1463340:CDS | 45.0% | |
| TTTAGGCTGCTAATGCTGCT+TGG | - | tig0043159:1666-1685 | Msa1463340:CDS | 45.0% | |
| ! | TGCTAATGCTGCTTGGAACA+TGG | - | tig0043159:1673-1692 | Msa1463340:CDS | 45.0% |
| ! | GCTAATGCTGCTTGGAACAT+GGG | - | tig0043159:1674-1693 | Msa1463340:CDS | 45.0% |
| TGCTTGGAACATGGGAGAAT+GGG | - | tig0043159:1682-1701 | Msa1463340:intron | 45.0% | |
| GAAACAAAACTTCGAAGCGC+GGG | - | tig0043159:1746-1765 | Msa1463340:intron | 45.0% | |
| TGATAGAACAGCCCTGAAGA+AGG | + | tig0043159:1810-1829 | Msa1463340:intergenic | 45.0% | |
| TCTATCAGTTCGCAGAGGAA+AGG | - | tig0043159:1823-1842 | Msa1463340:intron | 45.0% | |
| TGTCAAATCTGTGTGGTGAC+TGG | + | tig0043159:2223-2242 | Msa1463340:intergenic | 45.0% | |
| AGGGTTATGTACGGACTCAA+GGG | + | tig0043159:2412-2431 | Msa1463340:intergenic | 45.0% | |
| AAGGGTTATGTACGGACTCA+AGG | + | tig0043159:2413-2432 | Msa1463340:intergenic | 45.0% | |
| ! | CACAATTTGTTTGCACCTCC+AGG | - | tig0043159:2829-2848 | Msa1463340:intron | 45.0% |
| ! | TTGTTTGCACCTCCAGGTTT+TGG | - | tig0043159:2835-2854 | Msa1463340:intron | 45.0% |
| TGAGCGTGCTTACAGCAATA+TGG | - | tig0043159:2865-2884 | Msa1463340:intron | 45.0% | |
| ! | GGCTTATCTTCTTTTCTCCC+AGG | - | tig0043159:2988-3007 | Msa1463340:intron | 45.0% |
| GCGTACAGTAATCAATCACC+TGG | + | tig0043159:3009-3028 | Msa1463340:intergenic | 45.0% | |
| ATAGAGTTGCTGAAGAGCGA+CGG | - | tig0043159:3041-3060 | Msa1463340:intron | 45.0% | |
| ATGTGGACTCAGCGTATAGA+AGG | - | tig0043159:3079-3098 | Msa1463340:intron | 45.0% | |
| GAGGTAAACAGAGTTTCCCA+TGG | - | tig0043159:3118-3137 | Msa1463340:intron | 45.0% | |
| GCATGCATATGCAGTTCCAT+GGG | + | tig0043159:3137-3156 | Msa1463340:intergenic | 45.0% | |
| AGCATGCATATGCAGTTCCA+TGG | + | tig0043159:3138-3157 | Msa1463340:intergenic | 45.0% | |
| CATGCATATGCAGTTCCATG+GGG | + | tig0043159:3136-3155 | Msa1463340:intergenic | 45.0% | |
| GCATGCATATGCAGTTCCAT+GGG | + | tig0043159:3137-3156 | Msa1463340:intergenic | 45.0% | |
| AGCATGCATATGCAGTTCCA+TGG | + | tig0043159:3138-3157 | Msa1463340:intergenic | 45.0% | |
| ! | GATATTTGCTGAAACTGGGG+TGG | - | tig0043159:3533-3552 | Msa1463340:intron | 45.0% |
| GAGATGAAGCTGAAGCAAGA+TGG | - | tig0043159:3562-3581 | Msa1463340:intron | 45.0% | |
| GATGAAGCTGAAGCAAGATG+GGG | - | tig0043159:3564-3583 | Msa1463340:intron | 45.0% | |
| AGGCTGGTAACCCAAACAAT+TGG | - | tig0043159:3616-3635 | Msa1463340:intron | 45.0% | |
| CTCTCTCAATTGCTTGAAGC+TGG | - | tig0043159:3676-3695 | Msa1463340:intron | 45.0% | |
| TTGTTGCAGTTGTGCTGGAA+TGG | - | tig0043159:3868-3887 | Msa1463340:intron | 45.0% | |
| TGTTGCAGTTGTGCTGGAAT+GGG | - | tig0043159:3869-3888 | Msa1463340:intron | 45.0% | |
| AGCATCACAAAGTCAGAGGA+AGG | + | tig0043159:4015-4034 | Msa1463340:intergenic | 45.0% | |
| !! | GTGATGCTTTTTGGCAGGTT+TGG | - | tig0043159:4027-4046 | Msa1463340:intron | 45.0% |
| GTTTCAATGTCTTCAGCTGG+TGG | + | tig0043159:4086-4105 | Msa1463340:intergenic | 45.0% | |
| ACTGTGCACCTGGTATATGA+TGG | - | tig0043159:4191-4210 | Msa1463340:intron | 45.0% | |
| AAGTACGCCAGCATTACTTG+AGG | + | tig0043159:4320-4339 | Msa1463340:intergenic | 45.0% | |
| AATCCTCTCCAAGTGACCAT+TGG | + | tig0043159:4349-4368 | Msa1463340:intergenic | 45.0% | |
| GTTTCAGATAAACACGGGCA+AGG | + | tig0043159:4573-4592 | Msa1463340:intergenic | 45.0% | |
| ! | GCCCGTGTTTATCTGAAACT+TGG | - | tig0043159:4574-4593 | Msa1463340:intron | 45.0% |
| GGCCAAAGCTTGGCATAAAT+GGG | - | tig0043159:4768-4787 | Msa1463340:intron | 45.0% | |
| TGCCCATTTATGCCAAGCTT+TGG | + | tig0043159:4773-4792 | Msa1463340:intergenic | 45.0% | |
| CAAACTGTGCTGCAATGTCA+GGG | + | tig0043159:4840-4859 | Msa1463340:intergenic | 45.0% | |
| ACAAACTGTGCTGCAATGTC+AGG | + | tig0043159:4841-4860 | Msa1463340:intergenic | 45.0% | |
| !! | GTTTGTTGTTGCTGCTGTCA+CGG | - | tig0043159:4855-4874 | Msa1463340:intron | 45.0% |
| !! | TTTGTTGTTGCTGCTGTCAC+GGG | - | tig0043159:4856-4875 | Msa1463340:intron | 45.0% |
| GCATGTGCAGCAAATTCGAA+AGG | - | tig0043159:4895-4914 | Msa1463340:intron | 45.0% | |
| !! | GCAAATTCGAAAGGCGTTGA+CGG | - | tig0043159:4904-4923 | Msa1463340:intron | 45.0% |
| !! | CAAATTCGAAAGGCGTTGAC+GGG | - | tig0043159:4905-4924 | Msa1463340:intron | 45.0% |
| AGACACTAGGAATTCACGCA+CGG | - | tig0043159:5059-5078 | Msa1463340:intron | 45.0% | |
| ATGAAGTGCGACCAGATCTT+TGG | + | tig0043159:6399-6418 | Msa1463340:intergenic | 45.0% | |
| TGCTGGTATGCTTACAGTGT+CGG | - | tig0043159:6460-6479 | Msa1463340:intron | 45.0% | |
| TTTCTCCAAACAACTCCCCA+TGG | + | tig0043159:7413-7432 | Msa1463340:intergenic | 45.0% | |
| CCTTGACTATCACTCTCTCA+TGG | + | tig0043159:7580-7599 | Msa1463340:intergenic | 45.0% | |
| CCATGAGAGAGTGATAGTCA+AGG | - | tig0043159:7577-7596 | Msa1463340:intron | 45.0% | |
| ! | TGGTATAGTGGAGGGATGAA+AGG | - | tig0043159:8224-8243 | Msa1463340:intron | 45.0% |
| TTTGTCATACTGACGGTGCA+CGG | + | tig0043159:8657-8676 | Msa1463340:intergenic | 45.0% | |
| AAATAGCATTGCGCTCCCAT+GGG | - | tig0043159:8674-8693 | Msa1463340:intron | 45.0% | |
| TGAAACAAGTGGGAACCCAT+GGG | + | tig0043159:8692-8711 | Msa1463340:intergenic | 45.0% | |
| TCTTAAGCATGCTGAACTGC+AGG | - | tig0043159:8992-9011 | Msa1463340:CDS | 45.0% | |
| GTTCAAATGGCCCTAACGAA+AGG | - | tig0043159:9065-9084 | Msa1463340:intron | 45.0% | |
| !! | ATATCAAAAATAAATAAAAT+GGG | + | tig0043159:2513-2532 | Msa1463340:intergenic | 5.0% |
| !! | TATATCAAAAATAAATAAAA+TGG | + | tig0043159:2514-2533 | Msa1463340:intergenic | 5.0% |
| !! | AAATAAATTAAACATAAATT+AGG | + | tig0043159:6757-6776 | Msa1463340:intergenic | 5.0% |
| CCTTGCTGCATTAGCTCGAT+GGG | - | tig0043159:1497-1516 | Msa1463340:CDS | 50.0% | |
| CTGCTTGGAACATGGGAGAA+TGG | - | tig0043159:1681-1700 | Msa1463340:intron | 50.0% | |
| CATGGGAGAATGGGACCAAA+TGG | - | tig0043159:1691-1710 | Msa1463340:intron | 50.0% | |
| ACTACTTCCGTCACTACTCG+AGG | + | tig0043159:1780-1799 | Msa1463340:intergenic | 50.0% | |
| GCTGTTCTATCAGTTCGCAG+AGG | - | tig0043159:1818-1837 | Msa1463340:intron | 50.0% | |
| CATAGCTCTCCAAAACCTGG+AGG | + | tig0043159:2847-2866 | Msa1463340:intergenic | 50.0% | |
| GCTCATAGCTCTCCAAAACC+TGG | + | tig0043159:2850-2869 | Msa1463340:intergenic | 50.0% | |
| TAGAGTTGCTGAAGAGCGAC+GGG | - | tig0043159:3042-3061 | Msa1463340:intron | 50.0% | |
| GGGCTCTTATTCGCAACATG+TGG | - | tig0043159:3062-3081 | Msa1463340:intron | 50.0% | |
| AGGAGCCAAGAGCAATGTTG+AGG | - | tig0043159:3099-3118 | Msa1463340:intron | 50.0% | |
| GATAATTGCGGACCTACAGG+AGG | + | tig0043159:3380-3399 | Msa1463340:intergenic | 50.0% | |
| GGGACTTTGTGTGTGTGTGA+TGG | - | tig0043159:3584-3603 | Msa1463340:intron | 50.0% | |
| ! | TGTGTGTGTGATGGTGTGCT+GGG | - | tig0043159:3593-3612 | Msa1463340:intron | 50.0% |
| CTCAATTGCTTGAAGCTGGC+TGG | - | tig0043159:3680-3699 | Msa1463340:intron | 50.0% | |
| !! | GAAGCTGGCTGGTTTAACTG+TGG | - | tig0043159:3691-3710 | Msa1463340:intron | 50.0% |
| CTGCAACAACCCATAGCCAT+AGG | + | tig0043159:3857-3876 | Msa1463340:intergenic | 50.0% | |
| ! | ATGGGTTGTTGCAGTTGTGC+TGG | - | tig0043159:3863-3882 | Msa1463340:intron | 50.0% |
| !! | TGCTTTTTGGCAGGTTTGGC+AGG | - | tig0043159:4031-4050 | Msa1463340:intron | 50.0% |
| ACAGGTTTGAACTGTGCACC+TGG | - | tig0043159:4181-4200 | Msa1463340:intron | 50.0% | |
| CTTGAGGTGGGCCATGATAT+TGG | + | tig0043159:4304-4323 | Msa1463340:intergenic | 50.0% | |
| ACGCCAGCATTACTTGAGGT+GGG | + | tig0043159:4316-4335 | Msa1463340:intergenic | 50.0% | |
| TACGCCAGCATTACTTGAGG+TGG | + | tig0043159:4317-4336 | Msa1463340:intergenic | 50.0% | |
| GTTCCAATGGTCACTTGGAG+AGG | - | tig0043159:4343-4362 | Msa1463340:intron | 50.0% | |
| TGGATTCGTCAACCAGTCCA+GGG | + | tig0043159:4621-4640 | Msa1463340:intergenic | 50.0% | |
| ATGGATTCGTCAACCAGTCC+AGG | + | tig0043159:4622-4641 | Msa1463340:intergenic | 50.0% | |
| GGGCCAAAGCTTGGCATAAA+TGG | - | tig0043159:4767-4786 | Msa1463340:intron | 50.0% | |
| GACACTAGGAATTCACGCAC+GGG | - | tig0043159:5060-5079 | Msa1463340:intron | 50.0% | |
| TCAAGGATCTTCCTCAGAGG+CGG | - | tig0043159:5635-5654 | Msa1463340:intron | 50.0% | |
| GGTCTGTTAGGCCAAAGATC+TGG | - | tig0043159:6385-6404 | Msa1463340:CDS | 50.0% | |
| CTGTAAGCATACCAGCACCA+TGG | + | tig0043159:6457-6476 | Msa1463340:intergenic | 50.0% | |
| CAAATAGCATTGCGCTCCCA+TGG | - | tig0043159:8673-8692 | Msa1463340:intron | 50.0% | |
| GTGAAACAAGTGGGAACCCA+TGG | + | tig0043159:8693-8712 | Msa1463340:intergenic | 50.0% | |
| GAACTTCTGCAGTAGCTCCA+TGG | + | tig0043159:9049-9068 | Msa1463340:intergenic | 50.0% | |
| TTCTGCCCCAAATCATTGCC+AGG | - | tig0043159:9123-9142 | Msa1463340:CDS | 50.0% | |
| CTCTCTCACGGCATGGTTAT+TGG | + | tig0043159:9156-9175 | Msa1463340:intergenic | 50.0% | |
| GTATCAACTCTCTCACGGCA+TGG | + | tig0043159:9163-9182 | Msa1463340:intergenic | 50.0% | |
| GCCTTGCTGCATTAGCTCGA+TGG | - | tig0043159:1496-1515 | Msa1463340:CDS | 55.0% | |
| CCCATCGAGCTAATGCAGCA+AGG | + | tig0043159:1500-1519 | Msa1463340:intergenic | 55.0% | |
| GCGAGTTACTGCATCAGCAG+GGG | + | tig0043159:1556-1575 | Msa1463340:intergenic | 55.0% | |
| GGCGAGTTACTGCATCAGCA+GGG | + | tig0043159:1557-1576 | Msa1463340:intergenic | 55.0% | |
| AGGCGAGTTACTGCATCAGC+AGG | + | tig0043159:1558-1577 | Msa1463340:intergenic | 55.0% | |
| !! | GGCAACAGAGCTTGCTGCTT+TGG | - | tig0043159:1973-1992 | Msa1463340:intron | 55.0% |
| GCGCAGCTTCTTGCTGAGTT+TGG | + | tig0043159:3493-3512 | Msa1463340:intergenic | 55.0% | |
| AGCAAGAAGCTGCGCAATGC+AGG | - | tig0043159:3498-3517 | Msa1463340:intron | 55.0% | |
| GCAATGCAGGTGTTAGCTGC+TGG | - | tig0043159:3511-3530 | Msa1463340:intron | 55.0% | |
| ! | GTGTGTGTGTGATGGTGTGC+TGG | - | tig0043159:3592-3611 | Msa1463340:intron | 55.0% |
| CAGTTGTGCTGGAATGGGAG+CGG | - | tig0043159:3874-3893 | Msa1463340:intron | 55.0% | |
| AGTTGTGCTGGAATGGGAGC+GGG | - | tig0043159:3875-3894 | Msa1463340:intron | 55.0% | |
| ! | GCAGGTTTGGCAGGCACTTT+TGG | - | tig0043159:4040-4059 | Msa1463340:intron | 55.0% |
| GAGTATGGCACACGAGAGAG+AGG | + | tig0043159:4233-4252 | Msa1463340:intergenic | 55.0% | |
| TGGCCCACCTCAAGTAATGC+TGG | - | tig0043159:4310-4329 | Msa1463340:intron | 55.0% | |
| ACGGGCAAGGAGAGAACACT+TGG | + | tig0043159:4560-4579 | Msa1463340:intergenic | 55.0% | |
| TGAAACTTGGCTCCTGGCAG+TGG | - | tig0043159:4587-4606 | Msa1463340:intron | 55.0% | |
| GGATTCGTCAACCAGTCCAG+GGG | + | tig0043159:4620-4639 | Msa1463340:intergenic | 55.0% | |
| !! | AGGCGTTGACGGGAGTTTAC+AGG | - | tig0043159:4915-4934 | Msa1463340:intron | 55.0% |
| TTGCGTAAGATCCGCCTCTG+AGG | + | tig0043159:5649-5668 | Msa1463340:intergenic | 55.0% | |
| ! | GTGTGTGATGGTGTGCTGGG+AGG | - | tig0043159:3596-3615 | Msa1463340:intron | 60.0% |
| AGGGGAAAGTGACCACTGCC+AGG | + | tig0043159:4602-4621 | Msa1463340:intergenic | 60.0% | |
| ! | TGGCAGTGGTCACTTTCCCC+TGG | - | tig0043159:4601-4620 | Msa1463340:intron | 60.0% |
| ! | GTGGTCACTTTCCCCTGGAC+TGG | - | tig0043159:4606-4625 | Msa1463340:intron | 60.0% |
| ! | GTGATGGTGTGCTGGGAGGC+TGG | - | tig0043159:3600-3619 | Msa1463340:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0043159 | gene | 1489 | 9220 | 1489 | ID=Msa1463340;Name=Msa1463340 |
| tig0043159 | mRNA | 1489 | 9220 | 1489 | ID=Msa1463340-mRNA-1;Parent=Msa1463340;Name=Msa1463340-mRNA-1;_AED=0.14;_eAED=0.14;_QI=0|0.54|0.33|0.75|1|1|12|0|513 |
| tig0043159 | exon | 9116 | 9220 | 9116 | ID=Msa1463340-mRNA-1:exon:23999;Parent=Msa1463340-mRNA-1 |
| tig0043159 | exon | 8865 | 9038 | 8865 | ID=Msa1463340-mRNA-1:exon:23998;Parent=Msa1463340-mRNA-1 |
| tig0043159 | exon | 8715 | 8780 | 8715 | ID=Msa1463340-mRNA-1:exon:23997;Parent=Msa1463340-mRNA-1 |
| tig0043159 | exon | 7790 | 7858 | 7790 | ID=Msa1463340-mRNA-1:exon:23996;Parent=Msa1463340-mRNA-1 |
| tig0043159 | exon | 7589 | 7699 | 7589 | ID=Msa1463340-mRNA-1:exon:23995;Parent=Msa1463340-mRNA-1 |
| tig0043159 | exon | 7114 | 7231 | 7114 | ID=Msa1463340-mRNA-1:exon:23994;Parent=Msa1463340-mRNA-1 |
| tig0043159 | exon | 6771 | 6832 | 6771 | ID=Msa1463340-mRNA-1:exon:23993;Parent=Msa1463340-mRNA-1 |
| tig0043159 | exon | 6525 | 6665 | 6525 | ID=Msa1463340-mRNA-1:exon:23992;Parent=Msa1463340-mRNA-1 |
| tig0043159 | exon | 6309 | 6437 | 6309 | ID=Msa1463340-mRNA-1:exon:23991;Parent=Msa1463340-mRNA-1 |
| tig0043159 | exon | 6063 | 6204 | 6063 | ID=Msa1463340-mRNA-1:exon:23990;Parent=Msa1463340-mRNA-1 |
| tig0043159 | exon | 5773 | 5987 | 5773 | ID=Msa1463340-mRNA-1:exon:23989;Parent=Msa1463340-mRNA-1 |
| tig0043159 | exon | 1489 | 1695 | 1489 | ID=Msa1463340-mRNA-1:exon:23988;Parent=Msa1463340-mRNA-1 |
| tig0043159 | CDS | 9116 | 9220 | 9116 | ID=Msa1463340-mRNA-1:cds;Parent=Msa1463340-mRNA-1 |
| tig0043159 | CDS | 8865 | 9038 | 8865 | ID=Msa1463340-mRNA-1:cds;Parent=Msa1463340-mRNA-1 |
| tig0043159 | CDS | 8715 | 8780 | 8715 | ID=Msa1463340-mRNA-1:cds;Parent=Msa1463340-mRNA-1 |
| tig0043159 | CDS | 7790 | 7858 | 7790 | ID=Msa1463340-mRNA-1:cds;Parent=Msa1463340-mRNA-1 |
| tig0043159 | CDS | 7589 | 7699 | 7589 | ID=Msa1463340-mRNA-1:cds;Parent=Msa1463340-mRNA-1 |
| tig0043159 | CDS | 7114 | 7231 | 7114 | ID=Msa1463340-mRNA-1:cds;Parent=Msa1463340-mRNA-1 |
| tig0043159 | CDS | 6771 | 6832 | 6771 | ID=Msa1463340-mRNA-1:cds;Parent=Msa1463340-mRNA-1 |
| tig0043159 | CDS | 6525 | 6665 | 6525 | ID=Msa1463340-mRNA-1:cds;Parent=Msa1463340-mRNA-1 |
| tig0043159 | CDS | 6309 | 6437 | 6309 | ID=Msa1463340-mRNA-1:cds;Parent=Msa1463340-mRNA-1 |
| tig0043159 | CDS | 6063 | 6204 | 6063 | ID=Msa1463340-mRNA-1:cds;Parent=Msa1463340-mRNA-1 |
| tig0043159 | CDS | 5773 | 5987 | 5773 | ID=Msa1463340-mRNA-1:cds;Parent=Msa1463340-mRNA-1 |
| tig0043159 | CDS | 1489 | 1695 | 1489 | ID=Msa1463340-mRNA-1:cds;Parent=Msa1463340-mRNA-1 |
| Gene Sequence |
| Protein sequence |
