AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1463550

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1463550 MtrunA17_Chr1g0194841 95.846 337 14 0 1 337 429 765 0.0 674
Msa1463550 MtrunA17_Chr7g0269871 79.351 339 67 2 1 337 434 771 0.0 564
Msa1463550 MtrunA17_Chr2g0294751 60.472 339 122 4 1 336 432 761 6.94e-141 417
Msa1463550 MtrunA17_Chr4g0050591 47.401 327 169 2 1 327 449 772 8.17e-103 318
Msa1463550 MtrunA17_Chr2g0278761 46.341 328 173 2 1 328 450 774 5.17e-101 314
Msa1463550 MtrunA17_Chr5g0411571 43.235 340 179 6 1 328 444 781 4.87e-91 288
Msa1463550 MtrunA17_Chr1g0207281 46.462 325 168 3 1 319 451 775 5.34e-87 278
Msa1463550 MtrunA17_Chr5g0425431 41.742 333 183 5 3 327 449 778 4.65e-78 254
Msa1463550 MtrunA17_Chr5g0425531 41.003 339 177 6 3 327 454 783 1.31e-77 253
Msa1463550 MtrunA17_Chr5g0425471 42.042 333 182 6 3 327 451 780 2.12e-77 252
Msa1463550 MtrunA17_Chr5g0425451 41.716 338 186 6 3 332 451 785 3.05e-77 252
Msa1463550 MtrunA17_Chr3g0115601 40.828 338 179 6 3 327 445 774 8.34e-77 250
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1463550 AT1G02640.1 65.579 337 112 3 1 337 436 768 3.44e-158 461
Msa1463550 AT5G49360.1 60.597 335 124 5 2 330 441 773 8.69e-133 397
Msa1463550 AT5G64570.2 50.000 332 157 3 3 328 297 625 1.34e-109 332
Msa1463550 AT5G09700.1 49.240 329 158 5 1 323 195 520 3.80e-108 326
Msa1463550 AT5G64570.1 50.000 332 157 3 3 328 455 783 4.50e-108 333
Msa1463550 AT5G09730.1 46.687 332 168 4 1 327 444 771 3.44e-102 317
Msa1463550 AT3G19620.1 45.846 325 168 3 1 319 436 758 1.23e-96 303
Msa1463550 AT5G10560.1 44.272 323 166 5 17 328 472 791 2.11e-88 281
Msa1463550 AT1G78060.1 37.920 327 186 8 3 320 440 758 3.93e-71 235
Msa1463550 AT5G64570.3 58.993 139 56 1 3 141 455 592 1.30e-45 164

Find 108 sgRNAs with CRISPR-Local

Find 316 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGCAATGATGATAAGCAATT+TGG 0.200628 tig0043375:-9708 Msa1463550:CDS
AATCTAATATGTTCTGTCTT+TGG 0.259663 tig0043375:+8243 Msa1463550:intergenic
TTGAGTGTGGTTGATAAGTC+TGG 0.284224 tig0043375:-8425 Msa1463550:CDS
TGCAATTGTAAGATTGATAA+TGG 0.290067 tig0043375:-8004 Msa1463550:three_prime_UTR
GTAGGGGTTGTTGCAATTCT+TGG 0.292546 tig0043375:-8190 Msa1463550:three_prime_UTR
AACATCAATGTCAAGTCTAA+TGG 0.302466 tig0043375:+8616 Msa1463550:intergenic
CTCGAGAGGCCCAACCATTT+TGG 0.326495 tig0043375:-9541 Msa1463550:CDS
TTCTAAATAATCTCAATATA+TGG 0.327660 tig0043375:-8272 Msa1463550:three_prime_UTR
ACCGGAACTGAGACCACTTT+TGG 0.330162 tig0043375:+8713 Msa1463550:intergenic
TTTGCAAAAGTTATATCTAT+AGG 0.332303 tig0043375:+9501 Msa1463550:intergenic
GCATGCCACATTCGCACAAC+CGG 0.335024 tig0043375:+9728 Msa1463550:intergenic
AGATAATGTGTGAACAAAAT+TGG 0.338230 tig0043375:+8742 Msa1463550:intergenic
ATTCTTGGAGAAGAGATTAT+AGG 0.342911 tig0043375:-8175 Msa1463550:three_prime_UTR
AGGACTGGTTTACTTCTTCC+TGG 0.354806 tig0043375:-9600 Msa1463550:CDS
ACAAGTCCACTACAAGGAAT+AGG 0.363402 tig0043375:-9777 Msa1463550:CDS
GTAGTGTATCCATTTGGTTA+TGG 0.386753 tig0043375:-8776 Msa1463550:CDS
GTCTTGTGGGCTGGTTATCC+TGG 0.387757 tig0043375:-9456 Msa1463550:CDS
CAAGTCCACTACAAGGAATA+GGG 0.388588 tig0043375:-9776 Msa1463550:CDS
GCCATTGCGGATATATTGTT+TGG 0.389650 tig0043375:-9417 Msa1463550:CDS
ACCAGTCCTATCTACCATTT+CGG 0.395118 tig0043375:+9614 Msa1463550:intergenic
ACCAGACATTAAGACCAAAA+TGG 0.427459 tig0043375:+9527 Msa1463550:intergenic
GCAATGATGATAAGCAATTT+GGG 0.431372 tig0043375:-9707 Msa1463550:CDS
AAGAATGATCCTCGAATTGT+AGG 0.432895 tig0043375:-9480 Msa1463550:CDS
AGATGGTACTAACACTTTGT+TGG 0.445284 tig0043375:-8576 Msa1463550:CDS
CACCAGCAGGTAATGGTCAA+TGG 0.449857 tig0043375:-8541 Msa1463550:CDS
CCTTGTGGGTACCATGTCAT+AGG 0.459058 tig0043375:+8893 Msa1463550:intergenic
AGCTCATCCACAGGGTACCC+TGG 0.460856 tig0043375:-8827 Msa1463550:CDS
ATCCGCAATGGCAGCACCAC+CGG 0.461366 tig0043375:+9428 Msa1463550:intergenic
AACAGTAGCATCCGCTTGAC+GGG 0.464308 tig0043375:+9668 Msa1463550:intergenic
CTCGAATTGTAGGCGTCTTG+TGG 0.466486 tig0043375:-9470 Msa1463550:CDS
TATTTCCCTATTCCTTGTAG+TGG 0.467699 tig0043375:+9771 Msa1463550:intergenic
ATTGTAGGCGTCTTGTGGGC+TGG 0.469900 tig0043375:-9465 Msa1463550:CDS
GTCTATGTTACGATTAATGT+AGG 0.471767 tig0043375:-8053 Msa1463550:three_prime_UTR
ACCAAAAGTGGTCTCAGTTC+CGG 0.472082 tig0043375:-8714 Msa1463550:CDS
TCAGTCAATTGAGGCCGAAA+TGG 0.474480 tig0043375:-9628 Msa1463550:CDS
TTGAGGCCGAAATGGTAGAT+AGG 0.476400 tig0043375:-9620 Msa1463550:CDS
AAACAGTAGCATCCGCTTGA+CGG 0.478524 tig0043375:+9667 Msa1463550:intergenic
ATTATCTAGTGCACCAAAAG+TGG 0.483566 tig0043375:-8726 Msa1463550:CDS
ACCAGCAGGTAATGGTCAAT+GGG 0.486567 tig0043375:-8540 Msa1463550:CDS
CCACGGCGGTGGCCGTCTAC+CGG 0.487310 tig0043375:+8695 Msa1463550:intergenic
TTGAGCTGTTTCCACGGCGG+TGG 0.489932 tig0043375:+8684 Msa1463550:intergenic
ACGATCAAATAATGTATGGT+AGG 0.490949 tig0043375:-8208 Msa1463550:three_prime_UTR
GGCCCTGTAGTGTATCCATT+TGG 0.491504 tig0043375:-8782 Msa1463550:CDS
GGACTGGTTTACTTCTTCCT+GGG 0.495062 tig0043375:-9599 Msa1463550:CDS
AATGACGATCAAATAATGTA+TGG 0.495651 tig0043375:-8212 Msa1463550:three_prime_UTR
TAAGATAATCCATAACCAAA+TGG 0.495998 tig0043375:+8767 Msa1463550:intergenic
CGATCAAATAATGTATGGTA+GGG 0.498376 tig0043375:-8207 Msa1463550:three_prime_UTR
ACTCGTTGCTGAGCCTTAGC+AGG 0.500218 tig0043375:+8476 Msa1463550:intergenic
CACAAGACGCCTACAATTCG+AGG 0.502278 tig0043375:+9471 Msa1463550:intergenic
CGAGCCCGGTTGTGCGAATG+TGG 0.504050 tig0043375:-9733 Msa1463550:CDS
TCGAATTGTAGGCGTCTTGT+GGG 0.504658 tig0043375:-9469 Msa1463550:CDS
TAACCAAATGGATACACTAC+AGG 0.507124 tig0043375:+8779 Msa1463550:intergenic
GGGTACCCTGTGGATGAGCT+TGG 0.513477 tig0043375:+8830 Msa1463550:intergenic
ACAAGGTCTTGTTGATGCCC+AGG 0.514789 tig0043375:+9582 Msa1463550:intergenic
CTTTGTTTGAGCTGTTTCCA+CGG 0.516257 tig0043375:+8678 Msa1463550:intergenic
GACATTAAGACCAAAATGGT+TGG 0.518340 tig0043375:+9531 Msa1463550:intergenic
ACATTAAGACCAAAATGGTT+GGG 0.522088 tig0043375:+9532 Msa1463550:intergenic
TGAGTGTGGTTGATAAGTCT+GGG 0.522755 tig0043375:-8424 Msa1463550:CDS
GCTGGTTATCCTGGTCAAGC+CGG 0.527403 tig0043375:-9447 Msa1463550:CDS
TCAGTACCACCAGCAGGTAA+TGG 0.536648 tig0043375:-8548 Msa1463550:CDS
TCATTACAAACCTGGGTTAG+CGG 0.538786 tig0043375:+9392 Msa1463550:intergenic
TCAACAAGACCTTGTTTCAA+AGG 0.542357 tig0043375:-9574 Msa1463550:CDS
GCTCATCCACAGGGTACCCT+GGG 0.549425 tig0043375:-8826 Msa1463550:CDS
AGACCTTGTTTCAAAGGTAG+CGG 0.551793 tig0043375:-9568 Msa1463550:CDS
GAAAGTCTATGTTCCTGCTA+AGG 0.555151 tig0043375:-8489 Msa1463550:CDS
CATGCCACATTCGCACAACC+GGG 0.556110 tig0043375:+9729 Msa1463550:intergenic
GCAGCACCACCGGCTTGACC+AGG 0.560968 tig0043375:+9438 Msa1463550:intergenic
GATAATGGTAATAAACATGT+GGG 0.561408 tig0043375:-7989 Msa1463550:three_prime_UTR
AGCCGGTGGTGCTGCCATTG+CGG 0.565149 tig0043375:-9430 Msa1463550:CDS
ATGAGACCAAGCTCATCCAC+AGG 0.567760 tig0043375:-8836 Msa1463550:CDS
AAGGTAGCGGCTGCCTCGAG+AGG 0.568465 tig0043375:-9555 Msa1463550:CDS
GTGGTCTCAGTTCCGGTAGA+CGG 0.571301 tig0043375:-8707 Msa1463550:CDS
TGATAATGGTAATAAACATG+TGG 0.572073 tig0043375:-7990 Msa1463550:three_prime_UTR
TTTAGAAGACATTCTAAATG+CGG 0.574761 tig0043375:+8288 Msa1463550:intergenic
GCCCATTGACCATTACCTGC+TGG 0.576424 tig0043375:+8539 Msa1463550:intergenic
GCAAGGACTATTCACGAGCC+CGG 0.584280 tig0043375:-9747 Msa1463550:CDS
TCACTTCAAGAACAAACACT+AGG 0.584597 tig0043375:-8341 Msa1463550:CDS
TGGTTGATAAGTCTGGGACT+AGG 0.585602 tig0043375:-8418 Msa1463550:CDS
GGGACTAGGAGAATTCCAAT+GGG 0.591595 tig0043375:-8404 Msa1463550:CDS
GCCGAAATGGTAGATAGGAC+TGG 0.592618 tig0043375:-9615 Msa1463550:CDS
GGTTATCCTGGTCAAGCCGG+TGG 0.595636 tig0043375:-9444 Msa1463550:CDS
CCGGTAGACGGCCACCGCCG+TGG 0.596564 tig0043375:-8695 Msa1463550:CDS
TGGGACTAGGAGAATTCCAA+TGG 0.597147 tig0043375:-8405 Msa1463550:CDS
GGGATTGGATCAGTCAATTG+AGG 0.599415 tig0043375:-9637 Msa1463550:CDS
GTGTTCTCAGTACCACCAGC+AGG 0.602373 tig0043375:-8554 Msa1463550:CDS
TCCAAACAATATATCCGCAA+TGG 0.605705 tig0043375:+9416 Msa1463550:intergenic
TTGTTTGGAACCGCTAACCC+AGG 0.606167 tig0043375:-9402 Msa1463550:intron
CAGCCGCTACCTTTGAAACA+AGG 0.607790 tig0043375:+9565 Msa1463550:intergenic
GATCAAATAATGTATGGTAG+GGG 0.610448 tig0043375:-8206 Msa1463550:three_prime_UTR
AAGGAATAGGGAAATATGCA+AGG 0.614564 tig0043375:-9764 Msa1463550:CDS
CAAAATGGTTGGGCCTCTCG+AGG 0.619255 tig0043375:+9542 Msa1463550:intergenic
TCTAAATGCAGCCCGTCAAG+CGG 0.622520 tig0043375:-9679 Msa1463550:CDS
GGATACACAAGTCCACTACA+AGG 0.624565 tig0043375:-9783 Msa1463550:CDS
TGATGATAAGCAATTTGGGT+CGG 0.626009 tig0043375:-9703 Msa1463550:CDS
CTAAGGCTCAGCAACGAGTG+AGG 0.630458 tig0043375:-8472 Msa1463550:CDS
CACTTCAAGAACAAACACTA+GGG 0.646984 tig0043375:-8340 Msa1463550:CDS
CATTGACCATTACCTGCTGG+TGG 0.655851 tig0043375:+8542 Msa1463550:intergenic
TGTTCTCCCAGGGTACCCTG+TGG 0.657846 tig0043375:+8820 Msa1463550:intergenic
CCTATGACATGGTACCCACA+AGG 0.663844 tig0043375:-8893 Msa1463550:CDS
GGCACCACAAAAGCAACTAG+TGG 0.674093 tig0043375:-8519 Msa1463550:CDS
GAGCTAAGTTACCTATGACA+TGG 0.679205 tig0043375:-8904 Msa1463550:CDS
GGGGTACATAGTATTCACAT+TGG 0.680410 tig0043375:-8383 Msa1463550:CDS
AACCAAATGGATACACTACA+GGG 0.684560 tig0043375:+8780 Msa1463550:intergenic
AGAGTGACACATGCACGATG+TGG 0.689806 tig0043375:-8647 Msa1463550:CDS
TGAGACCAAGCTCATCCACA+GGG 0.704245 tig0043375:-8835 Msa1463550:CDS
GACTAGGAGAATTCCAATGG+GGG 0.732630 tig0043375:-8402 Msa1463550:CDS
TGTTTGAGCTGTTTCCACGG+CGG 0.753182 tig0043375:+8681 Msa1463550:intergenic
GGACTAGGAGAATTCCAATG+GGG 0.764226 tig0043375:-8403 Msa1463550:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTTTAAAAAAAAAAA+AGG - tig0043375:9627-9646 Msa1463550:CDS 0.0%
!!! TTTTTTTTTAAAAAAAAAAA+AGG - tig0043375:9627-9646 Msa1463550:CDS 0.0%
!!! TTTTTTAAAAAAAAAAAAGG+AGG - tig0043375:9630-9649 Msa1463550:CDS 10.0%
!!! TTTTTTAAAAAAAAAAAAGG+AGG - tig0043375:9630-9649 Msa1463550:CDS 10.0%
!!! TAATGAATCTATCTTTTTTA+AGG - tig0043375:8388-8407 Msa1463550:CDS 15.0%
!!! AATGAATCTATCTTTTTTAA+GGG - tig0043375:8389-8408 Msa1463550:CDS 15.0%
!!! TAGTTTTTAAGAAATTGTTT+GGG - tig0043375:8517-8536 Msa1463550:CDS 15.0%
!!! CATTTATAATGTAGTTTTTT+AGG + tig0043375:8601-8620 Msa1463550:intergenic 15.0%
!!! TTACTAGTTTTCTTTTTAAA+TGG - tig0043375:8782-8801 Msa1463550:CDS 15.0%
!! TTCTAAATAATCTCAATATA+TGG - tig0043375:9491-9510 Msa1463550:CDS 15.0%
!!! TAATGAATCTATCTTTTTTA+AGG - tig0043375:8388-8407 Msa1463550:CDS 15.0%
!!! AATGAATCTATCTTTTTTAA+GGG - tig0043375:8389-8408 Msa1463550:CDS 15.0%
!!! TAGTTTTTAAGAAATTGTTT+GGG - tig0043375:8517-8536 Msa1463550:CDS 15.0%
!!! CATTTATAATGTAGTTTTTT+AGG + tig0043375:8601-8620 Msa1463550:intergenic 15.0%
!!! TTACTAGTTTTCTTTTTAAA+TGG - tig0043375:8782-8801 Msa1463550:CDS 15.0%
!! TTCTAAATAATCTCAATATA+TGG - tig0043375:9491-9510 Msa1463550:CDS 15.0%
!! TTTGCAAAAGTTATATCTAT+AGG + tig0043375:8265-8284 Msa1463550:intergenic 20.0%
!!! GTAGTTTTTAAGAAATTGTT+TGG - tig0043375:8516-8535 Msa1463550:CDS 20.0%
!!! AGTTTTTAAGAAATTGTTTG+GGG - tig0043375:8518-8537 Msa1463550:CDS 20.0%
!!! TTGCAAGAGTTTTATATAAA+AGG - tig0043375:8731-8750 Msa1463550:CDS 20.0%
!!! AAGAGTTTTATATAAAAGGA+GGG - tig0043375:8735-8754 Msa1463550:CDS 20.0%
!! TAAAAAAATTCAAGTCTTGA+TGG + tig0043375:9450-9469 Msa1463550:intergenic 20.0%
!!! TCAAGACTTGAATTTTTTTA+TGG - tig0043375:9450-9469 Msa1463550:CDS 20.0%
!!! CAAGACTTGAATTTTTTTAT+GGG - tig0043375:9451-9470 Msa1463550:CDS 20.0%
!!! AAGACTTGAATTTTTTTATG+GGG - tig0043375:9452-9471 Msa1463550:CDS 20.0%
!! TTTGCAAAAGTTATATCTAT+AGG + tig0043375:8265-8284 Msa1463550:intergenic 20.0%
!!! GTAGTTTTTAAGAAATTGTT+TGG - tig0043375:8516-8535 Msa1463550:CDS 20.0%
!!! AGTTTTTAAGAAATTGTTTG+GGG - tig0043375:8518-8537 Msa1463550:CDS 20.0%
!!! TTGCAAGAGTTTTATATAAA+AGG - tig0043375:8731-8750 Msa1463550:CDS 20.0%
!!! AAGAGTTTTATATAAAAGGA+GGG - tig0043375:8735-8754 Msa1463550:CDS 20.0%
!! TAAAAAAATTCAAGTCTTGA+TGG + tig0043375:9450-9469 Msa1463550:intergenic 20.0%
!!! TCAAGACTTGAATTTTTTTA+TGG - tig0043375:9450-9469 Msa1463550:CDS 20.0%
!!! CAAGACTTGAATTTTTTTAT+GGG - tig0043375:9451-9470 Msa1463550:CDS 20.0%
!!! AAGACTTGAATTTTTTTATG+GGG - tig0043375:9452-9471 Msa1463550:CDS 20.0%
!!! GAGCAATTTTTAAGAATCAT+AGG + tig0043375:8427-8446 Msa1463550:intergenic 25.0%
!!! TAATGTTTTTTTCTTGTGTC+CGG + tig0043375:8468-8487 Msa1463550:intergenic 25.0%
!!! CAAGAGTTTTATATAAAAGG+AGG - tig0043375:8734-8753 Msa1463550:CDS 25.0%
!!! AGAACATATCGTTTTTACAA+CGG - tig0043375:8960-8979 Msa1463550:intron 25.0%
! TAAGATAATCCATAACCAAA+TGG + tig0043375:8999-9018 Msa1463550:intergenic 25.0%
! AGATAATGTGTGAACAAAAT+TGG + tig0043375:9024-9043 Msa1463550:intergenic 25.0%
! GACATTGATGTTAAAAACAT+TGG - tig0043375:9158-9177 Msa1463550:intron 25.0%
!!! AAAAACATTGGTTCAAAAGA+TGG - tig0043375:9170-9189 Msa1463550:intron 25.0%
! TTTAGAAGACATTCTAAATG+CGG + tig0043375:9478-9497 Msa1463550:intergenic 25.0%
! AATCTAATATGTTCTGTCTT+TGG + tig0043375:9523-9542 Msa1463550:intergenic 25.0%
! AATGACGATCAAATAATGTA+TGG - tig0043375:9551-9570 Msa1463550:CDS 25.0%
! TGCAATTGTAAGATTGATAA+TGG - tig0043375:9759-9778 Msa1463550:CDS 25.0%
!!! TGATAATGGTAATAAACATG+TGG - tig0043375:9773-9792 Msa1463550:CDS 25.0%
!! GATAATGGTAATAAACATGT+GGG - tig0043375:9774-9793 Msa1463550:CDS 25.0%
!!! GAGCAATTTTTAAGAATCAT+AGG + tig0043375:8427-8446 Msa1463550:intergenic 25.0%
!!! TAATGTTTTTTTCTTGTGTC+CGG + tig0043375:8468-8487 Msa1463550:intergenic 25.0%
!!! CAAGAGTTTTATATAAAAGG+AGG - tig0043375:8734-8753 Msa1463550:CDS 25.0%
!!! AGAACATATCGTTTTTACAA+CGG - tig0043375:8960-8979 Msa1463550:intron 25.0%
! TAAGATAATCCATAACCAAA+TGG + tig0043375:8999-9018 Msa1463550:intergenic 25.0%
! AGATAATGTGTGAACAAAAT+TGG + tig0043375:9024-9043 Msa1463550:intergenic 25.0%
! GACATTGATGTTAAAAACAT+TGG - tig0043375:9158-9177 Msa1463550:intron 25.0%
!!! AAAAACATTGGTTCAAAAGA+TGG - tig0043375:9170-9189 Msa1463550:intron 25.0%
! TTTAGAAGACATTCTAAATG+CGG + tig0043375:9478-9497 Msa1463550:intergenic 25.0%
! AATCTAATATGTTCTGTCTT+TGG + tig0043375:9523-9542 Msa1463550:intergenic 25.0%
! AATGACGATCAAATAATGTA+TGG - tig0043375:9551-9570 Msa1463550:CDS 25.0%
! TGCAATTGTAAGATTGATAA+TGG - tig0043375:9759-9778 Msa1463550:CDS 25.0%
!!! TGATAATGGTAATAAACATG+TGG - tig0043375:9773-9792 Msa1463550:CDS 25.0%
!! GATAATGGTAATAAACATGT+GGG - tig0043375:9774-9793 Msa1463550:CDS 25.0%
TGCAATGATGATAAGCAATT+TGG - tig0043375:8055-8074 Msa1463550:three_prime_UTR 30.0%
GCAATGATGATAAGCAATTT+GGG - tig0043375:8056-8075 Msa1463550:three_prime_UTR 30.0%
ACATTAAGACCAAAATGGTT+GGG + tig0043375:8234-8253 Msa1463550:intergenic 30.0%
GATAGATTCATTACAAACCT+GGG + tig0043375:8381-8400 Msa1463550:intergenic 30.0%
AGATAGATTCATTACAAACC+TGG + tig0043375:8382-8401 Msa1463550:intergenic 30.0%
! TAAGAAATTGTTTGGGGTAA+AGG - tig0043375:8524-8543 Msa1463550:CDS 30.0%
!! AGTTTTATATAAAAGGAGGG+AGG - tig0043375:8738-8757 Msa1463550:CDS 30.0%
!!! AGGGAGGTAGTAAAATTTTT+TGG - tig0043375:8754-8773 Msa1463550:CDS 30.0%
! TTTGCTACTGTTCAATTTTC+AGG - tig0043375:8837-8856 Msa1463550:CDS 30.0%
!!! AGTTTTTAAGGTATCCTTGT+GGG + tig0043375:8887-8906 Msa1463550:intergenic 30.0%
!!! AAGTTTTTAAGGTATCCTTG+TGG + tig0043375:8888-8907 Msa1463550:intergenic 30.0%
ACAAGGATACCTTAAAAACT+TGG - tig0043375:8887-8906 Msa1463550:CDS 30.0%
AACATCAATGTCAAGTCTAA+TGG + tig0043375:9150-9169 Msa1463550:intergenic 30.0%
ACGATCAAATAATGTATGGT+AGG - tig0043375:9555-9574 Msa1463550:CDS 30.0%
CGATCAAATAATGTATGGTA+GGG - tig0043375:9556-9575 Msa1463550:CDS 30.0%
GATCAAATAATGTATGGTAG+GGG - tig0043375:9557-9576 Msa1463550:CDS 30.0%
ATTCTTGGAGAAGAGATTAT+AGG - tig0043375:9588-9607 Msa1463550:CDS 30.0%
CGTAACATAGACAAAAAGAA+TGG + tig0043375:9702-9721 Msa1463550:intergenic 30.0%
GTCTATGTTACGATTAATGT+AGG - tig0043375:9710-9729 Msa1463550:CDS 30.0%
TGCAATGATGATAAGCAATT+TGG - tig0043375:8055-8074 Msa1463550:three_prime_UTR 30.0%
GCAATGATGATAAGCAATTT+GGG - tig0043375:8056-8075 Msa1463550:three_prime_UTR 30.0%
ACATTAAGACCAAAATGGTT+GGG + tig0043375:8234-8253 Msa1463550:intergenic 30.0%
GATAGATTCATTACAAACCT+GGG + tig0043375:8381-8400 Msa1463550:intergenic 30.0%
AGATAGATTCATTACAAACC+TGG + tig0043375:8382-8401 Msa1463550:intergenic 30.0%
! TAAGAAATTGTTTGGGGTAA+AGG - tig0043375:8524-8543 Msa1463550:CDS 30.0%
!! AGTTTTATATAAAAGGAGGG+AGG - tig0043375:8738-8757 Msa1463550:CDS 30.0%
!!! AGGGAGGTAGTAAAATTTTT+TGG - tig0043375:8754-8773 Msa1463550:CDS 30.0%
! TTTGCTACTGTTCAATTTTC+AGG - tig0043375:8837-8856 Msa1463550:CDS 30.0%
!!! AGTTTTTAAGGTATCCTTGT+GGG + tig0043375:8887-8906 Msa1463550:intergenic 30.0%
!!! AAGTTTTTAAGGTATCCTTG+TGG + tig0043375:8888-8907 Msa1463550:intergenic 30.0%
ACAAGGATACCTTAAAAACT+TGG - tig0043375:8887-8906 Msa1463550:CDS 30.0%
AACATCAATGTCAAGTCTAA+TGG + tig0043375:9150-9169 Msa1463550:intergenic 30.0%
ACGATCAAATAATGTATGGT+AGG - tig0043375:9555-9574 Msa1463550:CDS 30.0%
CGATCAAATAATGTATGGTA+GGG - tig0043375:9556-9575 Msa1463550:CDS 30.0%
GATCAAATAATGTATGGTAG+GGG - tig0043375:9557-9576 Msa1463550:CDS 30.0%
ATTCTTGGAGAAGAGATTAT+AGG - tig0043375:9588-9607 Msa1463550:CDS 30.0%
CGTAACATAGACAAAAAGAA+TGG + tig0043375:9702-9721 Msa1463550:intergenic 30.0%
GTCTATGTTACGATTAATGT+AGG - tig0043375:9710-9729 Msa1463550:CDS 30.0%
TATTTCCCTATTCCTTGTAG+TGG + tig0043375:7995-8014 Msa1463550:intergenic 35.0%
AAGGAATAGGGAAATATGCA+AGG - tig0043375:7999-8018 Msa1463550:three_prime_UTR 35.0%
TGATGATAAGCAATTTGGGT+CGG - tig0043375:8060-8079 Msa1463550:three_prime_UTR 35.0%
!!! GATGCTACTGTTTTAGTGAT+GGG - tig0043375:8106-8125 Msa1463550:three_prime_UTR 35.0%
!!! TACTGTTTTAGTGATGGGAT+TGG - tig0043375:8111-8130 Msa1463550:three_prime_UTR 35.0%
! TCAACAAGACCTTGTTTCAA+AGG - tig0043375:8189-8208 Msa1463550:three_prime_UTR 35.0%
GACATTAAGACCAAAATGGT+TGG + tig0043375:8235-8254 Msa1463550:intergenic 35.0%
!!! ACCATTTTGGTCTTAATGTC+TGG - tig0043375:8235-8254 Msa1463550:three_prime_UTR 35.0%
ACCAGACATTAAGACCAAAA+TGG + tig0043375:8239-8258 Msa1463550:intergenic 35.0%
!!! ATTTTGGTCTTAATGTCTGG+TGG - tig0043375:8238-8257 Msa1463550:three_prime_UTR 35.0%
!!! TTTTGGTCTTAATGTCTGGT+GGG - tig0043375:8239-8258 Msa1463550:three_prime_UTR 35.0%
AAGAATGATCCTCGAATTGT+AGG - tig0043375:8283-8302 Msa1463550:three_prime_UTR 35.0%
TCCAAACAATATATCCGCAA+TGG + tig0043375:8350-8369 Msa1463550:intergenic 35.0%
TCTTAAAAATTGCTCGAGTC+CGG - tig0043375:8432-8451 Msa1463550:CDS 35.0%
!!! TTTTTTTCTTGTGTCCGGAT+GGG + tig0043375:8463-8482 Msa1463550:intergenic 35.0%
AAAAACTACGCTCATCAAGA+TGG + tig0043375:8505-8524 Msa1463550:intergenic 35.0%
TATCTCTCAAAATGCACTCT+AGG - tig0043375:8575-8594 Msa1463550:CDS 35.0%
! CTGTCATTGCCAAGTTTTTA+AGG + tig0043375:8899-8918 Msa1463550:intergenic 35.0%
AAAAACGATATGTTCTCCCA+GGG + tig0043375:8956-8975 Msa1463550:intergenic 35.0%
TAAAAACGATATGTTCTCCC+AGG + tig0043375:8957-8976 Msa1463550:intergenic 35.0%
AACCAAATGGATACACTACA+GGG + tig0043375:8986-9005 Msa1463550:intergenic 35.0%
TAACCAAATGGATACACTAC+AGG + tig0043375:8987-9006 Msa1463550:intergenic 35.0%
GTAGTGTATCCATTTGGTTA+TGG - tig0043375:8987-9006 Msa1463550:intron 35.0%
ATTATCTAGTGCACCAAAAG+TGG - tig0043375:9037-9056 Msa1463550:intron 35.0%
AGATGGTACTAACACTTTGT+TGG - tig0043375:9187-9206 Msa1463550:intron 35.0%
!! TGTATGTAAGCTTTTGAGTG+TGG - tig0043375:9325-9344 Msa1463550:intron 35.0%
TCACTTCAAGAACAAACACT+AGG - tig0043375:9422-9441 Msa1463550:CDS 35.0%
CACTTCAAGAACAAACACTA+GGG - tig0043375:9423-9442 Msa1463550:CDS 35.0%
TATTTCCCTATTCCTTGTAG+TGG + tig0043375:7995-8014 Msa1463550:intergenic 35.0%
AAGGAATAGGGAAATATGCA+AGG - tig0043375:7999-8018 Msa1463550:three_prime_UTR 35.0%
TGATGATAAGCAATTTGGGT+CGG - tig0043375:8060-8079 Msa1463550:three_prime_UTR 35.0%
!!! GATGCTACTGTTTTAGTGAT+GGG - tig0043375:8106-8125 Msa1463550:three_prime_UTR 35.0%
!!! TACTGTTTTAGTGATGGGAT+TGG - tig0043375:8111-8130 Msa1463550:three_prime_UTR 35.0%
! TCAACAAGACCTTGTTTCAA+AGG - tig0043375:8189-8208 Msa1463550:three_prime_UTR 35.0%
GACATTAAGACCAAAATGGT+TGG + tig0043375:8235-8254 Msa1463550:intergenic 35.0%
!!! ACCATTTTGGTCTTAATGTC+TGG - tig0043375:8235-8254 Msa1463550:three_prime_UTR 35.0%
ACCAGACATTAAGACCAAAA+TGG + tig0043375:8239-8258 Msa1463550:intergenic 35.0%
!!! ATTTTGGTCTTAATGTCTGG+TGG - tig0043375:8238-8257 Msa1463550:three_prime_UTR 35.0%
!!! TTTTGGTCTTAATGTCTGGT+GGG - tig0043375:8239-8258 Msa1463550:three_prime_UTR 35.0%
AAGAATGATCCTCGAATTGT+AGG - tig0043375:8283-8302 Msa1463550:three_prime_UTR 35.0%
TCCAAACAATATATCCGCAA+TGG + tig0043375:8350-8369 Msa1463550:intergenic 35.0%
TCTTAAAAATTGCTCGAGTC+CGG - tig0043375:8432-8451 Msa1463550:CDS 35.0%
!!! TTTTTTTCTTGTGTCCGGAT+GGG + tig0043375:8463-8482 Msa1463550:intergenic 35.0%
AAAAACTACGCTCATCAAGA+TGG + tig0043375:8505-8524 Msa1463550:intergenic 35.0%
TATCTCTCAAAATGCACTCT+AGG - tig0043375:8575-8594 Msa1463550:CDS 35.0%
! CTGTCATTGCCAAGTTTTTA+AGG + tig0043375:8899-8918 Msa1463550:intergenic 35.0%
AAAAACGATATGTTCTCCCA+GGG + tig0043375:8956-8975 Msa1463550:intergenic 35.0%
TAAAAACGATATGTTCTCCC+AGG + tig0043375:8957-8976 Msa1463550:intergenic 35.0%
AACCAAATGGATACACTACA+GGG + tig0043375:8986-9005 Msa1463550:intergenic 35.0%
TAACCAAATGGATACACTAC+AGG + tig0043375:8987-9006 Msa1463550:intergenic 35.0%
GTAGTGTATCCATTTGGTTA+TGG - tig0043375:8987-9006 Msa1463550:intron 35.0%
ATTATCTAGTGCACCAAAAG+TGG - tig0043375:9037-9056 Msa1463550:intron 35.0%
AGATGGTACTAACACTTTGT+TGG - tig0043375:9187-9206 Msa1463550:intron 35.0%
!! TGTATGTAAGCTTTTGAGTG+TGG - tig0043375:9325-9344 Msa1463550:intron 35.0%
TCACTTCAAGAACAAACACT+AGG - tig0043375:9422-9441 Msa1463550:CDS 35.0%
CACTTCAAGAACAAACACTA+GGG - tig0043375:9423-9442 Msa1463550:CDS 35.0%
ACAAGTCCACTACAAGGAAT+AGG - tig0043375:7986-8005 Msa1463550:three_prime_UTR 40.0%
CAAGTCCACTACAAGGAATA+GGG - tig0043375:7987-8006 Msa1463550:three_prime_UTR 40.0%
!!! GGATGCTACTGTTTTAGTGA+TGG - tig0043375:8105-8124 Msa1463550:three_prime_UTR 40.0%
ACCAGTCCTATCTACCATTT+CGG + tig0043375:8152-8171 Msa1463550:intergenic 40.0%
! AGACCTTGTTTCAAAGGTAG+CGG - tig0043375:8195-8214 Msa1463550:three_prime_UTR 40.0%
GCCATTGCGGATATATTGTT+TGG - tig0043375:8346-8365 Msa1463550:CDS 40.0%
! TCATTACAAACCTGGGTTAG+CGG + tig0043375:8374-8393 Msa1463550:intergenic 40.0%
!!! GTTTTTTTCTTGTGTCCGGA+TGG + tig0043375:8464-8483 Msa1463550:intergenic 40.0%
GAGCTAAGTTACCTATGACA+TGG - tig0043375:8859-8878 Msa1463550:CDS 40.0%
! CTTTGTTTGAGCTGTTTCCA+CGG + tig0043375:9088-9107 Msa1463550:intergenic 40.0%
!!! AAAGCCACTAGTTGCTTTTG+TGG + tig0043375:9251-9270 Msa1463550:intergenic 40.0%
GAAAGTCTATGTTCCTGCTA+AGG - tig0043375:9274-9293 Msa1463550:intron 40.0%
!! TTGAGTGTGGTTGATAAGTC+TGG - tig0043375:9338-9357 Msa1463550:intron 40.0%
!! TGAGTGTGGTTGATAAGTCT+GGG - tig0043375:9339-9358 Msa1463550:intron 40.0%
TGAATACTATGTACCCCCAT+TGG + tig0043375:9377-9396 Msa1463550:intergenic 40.0%
GGGGTACATAGTATTCACAT+TGG - tig0043375:9380-9399 Msa1463550:intron 40.0%
ACAAGTCCACTACAAGGAAT+AGG - tig0043375:7986-8005 Msa1463550:three_prime_UTR 40.0%
CAAGTCCACTACAAGGAATA+GGG - tig0043375:7987-8006 Msa1463550:three_prime_UTR 40.0%
!!! GGATGCTACTGTTTTAGTGA+TGG - tig0043375:8105-8124 Msa1463550:three_prime_UTR 40.0%
ACCAGTCCTATCTACCATTT+CGG + tig0043375:8152-8171 Msa1463550:intergenic 40.0%
! AGACCTTGTTTCAAAGGTAG+CGG - tig0043375:8195-8214 Msa1463550:three_prime_UTR 40.0%
GCCATTGCGGATATATTGTT+TGG - tig0043375:8346-8365 Msa1463550:CDS 40.0%
! TCATTACAAACCTGGGTTAG+CGG + tig0043375:8374-8393 Msa1463550:intergenic 40.0%
!!! GTTTTTTTCTTGTGTCCGGA+TGG + tig0043375:8464-8483 Msa1463550:intergenic 40.0%
GAGCTAAGTTACCTATGACA+TGG - tig0043375:8859-8878 Msa1463550:CDS 40.0%
! CTTTGTTTGAGCTGTTTCCA+CGG + tig0043375:9088-9107 Msa1463550:intergenic 40.0%
!!! AAAGCCACTAGTTGCTTTTG+TGG + tig0043375:9251-9270 Msa1463550:intergenic 40.0%
GAAAGTCTATGTTCCTGCTA+AGG - tig0043375:9274-9293 Msa1463550:intron 40.0%
!! TTGAGTGTGGTTGATAAGTC+TGG - tig0043375:9338-9357 Msa1463550:intron 40.0%
!! TGAGTGTGGTTGATAAGTCT+GGG - tig0043375:9339-9358 Msa1463550:intron 40.0%
TGAATACTATGTACCCCCAT+TGG + tig0043375:9377-9396 Msa1463550:intergenic 40.0%
GGGGTACATAGTATTCACAT+TGG - tig0043375:9380-9399 Msa1463550:intron 40.0%
GGATACACAAGTCCACTACA+AGG - tig0043375:7980-7999 Msa1463550:three_prime_UTR 45.0%
AAACAGTAGCATCCGCTTGA+CGG + tig0043375:8099-8118 Msa1463550:intergenic 45.0%
GGGATTGGATCAGTCAATTG+AGG - tig0043375:8126-8145 Msa1463550:three_prime_UTR 45.0%
TCAGTCAATTGAGGCCGAAA+TGG - tig0043375:8135-8154 Msa1463550:three_prime_UTR 45.0%
TTGAGGCCGAAATGGTAGAT+AGG - tig0043375:8143-8162 Msa1463550:three_prime_UTR 45.0%
!! AGGACTGGTTTACTTCTTCC+TGG - tig0043375:8163-8182 Msa1463550:three_prime_UTR 45.0%
!! GGACTGGTTTACTTCTTCCT+GGG - tig0043375:8164-8183 Msa1463550:three_prime_UTR 45.0%
TCGAATTGTAGGCGTCTTGT+GGG - tig0043375:8294-8313 Msa1463550:three_prime_UTR 45.0%
ACCAAAAGTGGTCTCAGTTC+CGG - tig0043375:9049-9068 Msa1463550:intron 45.0%
! ACCAGCAGGTAATGGTCAAT+GGG - tig0043375:9223-9242 Msa1463550:intron 45.0%
!! TGGTTGATAAGTCTGGGACT+AGG - tig0043375:9345-9364 Msa1463550:intron 45.0%
TGGGACTAGGAGAATTCCAA+TGG - tig0043375:9358-9377 Msa1463550:intron 45.0%
GGGACTAGGAGAATTCCAAT+GGG - tig0043375:9359-9378 Msa1463550:intron 45.0%
GGACTAGGAGAATTCCAATG+GGG - tig0043375:9360-9379 Msa1463550:intron 45.0%
GACTAGGAGAATTCCAATGG+GGG - tig0043375:9361-9380 Msa1463550:intron 45.0%
GTAGGGGTTGTTGCAATTCT+TGG - tig0043375:9573-9592 Msa1463550:CDS 45.0%
GGATACACAAGTCCACTACA+AGG - tig0043375:7980-7999 Msa1463550:three_prime_UTR 45.0%
AAACAGTAGCATCCGCTTGA+CGG + tig0043375:8099-8118 Msa1463550:intergenic 45.0%
GGGATTGGATCAGTCAATTG+AGG - tig0043375:8126-8145 Msa1463550:three_prime_UTR 45.0%
TCAGTCAATTGAGGCCGAAA+TGG - tig0043375:8135-8154 Msa1463550:three_prime_UTR 45.0%
TTGAGGCCGAAATGGTAGAT+AGG - tig0043375:8143-8162 Msa1463550:three_prime_UTR 45.0%
!! AGGACTGGTTTACTTCTTCC+TGG - tig0043375:8163-8182 Msa1463550:three_prime_UTR 45.0%
!! GGACTGGTTTACTTCTTCCT+GGG - tig0043375:8164-8183 Msa1463550:three_prime_UTR 45.0%
TCGAATTGTAGGCGTCTTGT+GGG - tig0043375:8294-8313 Msa1463550:three_prime_UTR 45.0%
ACCAAAAGTGGTCTCAGTTC+CGG - tig0043375:9049-9068 Msa1463550:intron 45.0%
! ACCAGCAGGTAATGGTCAAT+GGG - tig0043375:9223-9242 Msa1463550:intron 45.0%
!! TGGTTGATAAGTCTGGGACT+AGG - tig0043375:9345-9364 Msa1463550:intron 45.0%
TGGGACTAGGAGAATTCCAA+TGG - tig0043375:9358-9377 Msa1463550:intron 45.0%
GGGACTAGGAGAATTCCAAT+GGG - tig0043375:9359-9378 Msa1463550:intron 45.0%
GGACTAGGAGAATTCCAATG+GGG - tig0043375:9360-9379 Msa1463550:intron 45.0%
GACTAGGAGAATTCCAATGG+GGG - tig0043375:9361-9380 Msa1463550:intron 45.0%
GTAGGGGTTGTTGCAATTCT+TGG - tig0043375:9573-9592 Msa1463550:CDS 45.0%
TCTAAATGCAGCCCGTCAAG+CGG - tig0043375:8084-8103 Msa1463550:three_prime_UTR 50.0%
AACAGTAGCATCCGCTTGAC+GGG + tig0043375:8098-8117 Msa1463550:intergenic 50.0%
GCCGAAATGGTAGATAGGAC+TGG - tig0043375:8148-8167 Msa1463550:three_prime_UTR 50.0%
!! ACAAGGTCTTGTTGATGCCC+AGG + tig0043375:8184-8203 Msa1463550:intergenic 50.0%
!! CAGCCGCTACCTTTGAAACA+AGG + tig0043375:8201-8220 Msa1463550:intergenic 50.0%
CACAAGACGCCTACAATTCG+AGG + tig0043375:8295-8314 Msa1463550:intergenic 50.0%
CTCGAATTGTAGGCGTCTTG+TGG - tig0043375:8293-8312 Msa1463550:three_prime_UTR 50.0%
! TTGTTTGGAACCGCTAACCC+AGG - tig0043375:8361-8380 Msa1463550:CDS 50.0%
CCTTGTGGGTACCATGTCAT+AGG + tig0043375:8873-8892 Msa1463550:intergenic 50.0%
CCTATGACATGGTACCCACA+AGG - tig0043375:8870-8889 Msa1463550:CDS 50.0%
ATGAGACCAAGCTCATCCAC+AGG - tig0043375:8927-8946 Msa1463550:intron 50.0%
TGAGACCAAGCTCATCCACA+GGG - tig0043375:8928-8947 Msa1463550:intron 50.0%
GGCCCTGTAGTGTATCCATT+TGG - tig0043375:8981-9000 Msa1463550:intron 50.0%
! ACCGGAACTGAGACCACTTT+TGG + tig0043375:9053-9072 Msa1463550:intergenic 50.0%
! TGTTTGAGCTGTTTCCACGG+CGG + tig0043375:9085-9104 Msa1463550:intergenic 50.0%
AGAGTGACACATGCACGATG+TGG - tig0043375:9116-9135 Msa1463550:intron 50.0%
TCAGTACCACCAGCAGGTAA+TGG - tig0043375:9215-9234 Msa1463550:intron 50.0%
CATTGACCATTACCTGCTGG+TGG + tig0043375:9224-9243 Msa1463550:intergenic 50.0%
! CACCAGCAGGTAATGGTCAA+TGG - tig0043375:9222-9241 Msa1463550:intron 50.0%
GGCACCACAAAAGCAACTAG+TGG - tig0043375:9244-9263 Msa1463550:intron 50.0%
TCTAAATGCAGCCCGTCAAG+CGG - tig0043375:8084-8103 Msa1463550:three_prime_UTR 50.0%
AACAGTAGCATCCGCTTGAC+GGG + tig0043375:8098-8117 Msa1463550:intergenic 50.0%
GCCGAAATGGTAGATAGGAC+TGG - tig0043375:8148-8167 Msa1463550:three_prime_UTR 50.0%
!! ACAAGGTCTTGTTGATGCCC+AGG + tig0043375:8184-8203 Msa1463550:intergenic 50.0%
!! CAGCCGCTACCTTTGAAACA+AGG + tig0043375:8201-8220 Msa1463550:intergenic 50.0%
CACAAGACGCCTACAATTCG+AGG + tig0043375:8295-8314 Msa1463550:intergenic 50.0%
CTCGAATTGTAGGCGTCTTG+TGG - tig0043375:8293-8312 Msa1463550:three_prime_UTR 50.0%
! TTGTTTGGAACCGCTAACCC+AGG - tig0043375:8361-8380 Msa1463550:CDS 50.0%
CCTTGTGGGTACCATGTCAT+AGG + tig0043375:8873-8892 Msa1463550:intergenic 50.0%
CCTATGACATGGTACCCACA+AGG - tig0043375:8870-8889 Msa1463550:CDS 50.0%
ATGAGACCAAGCTCATCCAC+AGG - tig0043375:8927-8946 Msa1463550:intron 50.0%
TGAGACCAAGCTCATCCACA+GGG - tig0043375:8928-8947 Msa1463550:intron 50.0%
GGCCCTGTAGTGTATCCATT+TGG - tig0043375:8981-9000 Msa1463550:intron 50.0%
! ACCGGAACTGAGACCACTTT+TGG + tig0043375:9053-9072 Msa1463550:intergenic 50.0%
! TGTTTGAGCTGTTTCCACGG+CGG + tig0043375:9085-9104 Msa1463550:intergenic 50.0%
AGAGTGACACATGCACGATG+TGG - tig0043375:9116-9135 Msa1463550:intron 50.0%
TCAGTACCACCAGCAGGTAA+TGG - tig0043375:9215-9234 Msa1463550:intron 50.0%
CATTGACCATTACCTGCTGG+TGG + tig0043375:9224-9243 Msa1463550:intergenic 50.0%
! CACCAGCAGGTAATGGTCAA+TGG - tig0043375:9222-9241 Msa1463550:intron 50.0%
GGCACCACAAAAGCAACTAG+TGG - tig0043375:9244-9263 Msa1463550:intron 50.0%
GCAAGGACTATTCACGAGCC+CGG - tig0043375:8016-8035 Msa1463550:three_prime_UTR 55.0%
CATGCCACATTCGCACAACC+GGG + tig0043375:8037-8056 Msa1463550:intergenic 55.0%
GCATGCCACATTCGCACAAC+CGG + tig0043375:8038-8057 Msa1463550:intergenic 55.0%
CAAAATGGTTGGGCCTCTCG+AGG + tig0043375:8224-8243 Msa1463550:intergenic 55.0%
! CTCGAGAGGCCCAACCATTT+TGG - tig0043375:8222-8241 Msa1463550:three_prime_UTR 55.0%
ATTGTAGGCGTCTTGTGGGC+TGG - tig0043375:8298-8317 Msa1463550:three_prime_UTR 55.0%
!! GTCTTGTGGGCTGGTTATCC+TGG - tig0043375:8307-8326 Msa1463550:exon 55.0%
GCTGGTTATCCTGGTCAAGC+CGG - tig0043375:8316-8335 Msa1463550:exon 55.0%
TGTGTCCGGATGGGTGAATC+CGG + tig0043375:8454-8473 Msa1463550:intergenic 55.0%
GTGGTCTCAGTTCCGGTAGA+CGG - tig0043375:9056-9075 Msa1463550:intron 55.0%
GTGTTCTCAGTACCACCAGC+AGG - tig0043375:9209-9228 Msa1463550:intron 55.0%
GCCCATTGACCATTACCTGC+TGG + tig0043375:9227-9246 Msa1463550:intergenic 55.0%
ACTCGTTGCTGAGCCTTAGC+AGG + tig0043375:9290-9309 Msa1463550:intergenic 55.0%
CTAAGGCTCAGCAACGAGTG+AGG - tig0043375:9291-9310 Msa1463550:intron 55.0%
GCAAGGACTATTCACGAGCC+CGG - tig0043375:8016-8035 Msa1463550:three_prime_UTR 55.0%
CATGCCACATTCGCACAACC+GGG + tig0043375:8037-8056 Msa1463550:intergenic 55.0%
GCATGCCACATTCGCACAAC+CGG + tig0043375:8038-8057 Msa1463550:intergenic 55.0%
CAAAATGGTTGGGCCTCTCG+AGG + tig0043375:8224-8243 Msa1463550:intergenic 55.0%
! CTCGAGAGGCCCAACCATTT+TGG - tig0043375:8222-8241 Msa1463550:three_prime_UTR 55.0%
ATTGTAGGCGTCTTGTGGGC+TGG - tig0043375:8298-8317 Msa1463550:three_prime_UTR 55.0%
!! GTCTTGTGGGCTGGTTATCC+TGG - tig0043375:8307-8326 Msa1463550:exon 55.0%
GCTGGTTATCCTGGTCAAGC+CGG - tig0043375:8316-8335 Msa1463550:exon 55.0%
TGTGTCCGGATGGGTGAATC+CGG + tig0043375:8454-8473 Msa1463550:intergenic 55.0%
GTGGTCTCAGTTCCGGTAGA+CGG - tig0043375:9056-9075 Msa1463550:intron 55.0%
GTGTTCTCAGTACCACCAGC+AGG - tig0043375:9209-9228 Msa1463550:intron 55.0%
GCCCATTGACCATTACCTGC+TGG + tig0043375:9227-9246 Msa1463550:intergenic 55.0%
ACTCGTTGCTGAGCCTTAGC+AGG + tig0043375:9290-9309 Msa1463550:intergenic 55.0%
CTAAGGCTCAGCAACGAGTG+AGG - tig0043375:9291-9310 Msa1463550:intron 55.0%
GGTTATCCTGGTCAAGCCGG+TGG - tig0043375:8319-8338 Msa1463550:exon 60.0%
ATCCGCAATGGCAGCACCAC+CGG + tig0043375:8338-8357 Msa1463550:intergenic 60.0%
CGAGTCCGGATTCACCCATC+CGG - tig0043375:8446-8465 Msa1463550:CDS 60.0%
GGGTACCCTGTGGATGAGCT+TGG + tig0043375:8936-8955 Msa1463550:intergenic 60.0%
! AGCTCATCCACAGGGTACCC+TGG - tig0043375:8936-8955 Msa1463550:intron 60.0%
! GCTCATCCACAGGGTACCCT+GGG - tig0043375:8937-8956 Msa1463550:intron 60.0%
! TGTTCTCCCAGGGTACCCTG+TGG + tig0043375:8946-8965 Msa1463550:intergenic 60.0%
! TTGAGCTGTTTCCACGGCGG+TGG + tig0043375:9082-9101 Msa1463550:intergenic 60.0%
GGTTATCCTGGTCAAGCCGG+TGG - tig0043375:8319-8338 Msa1463550:exon 60.0%
ATCCGCAATGGCAGCACCAC+CGG + tig0043375:8338-8357 Msa1463550:intergenic 60.0%
CGAGTCCGGATTCACCCATC+CGG - tig0043375:8446-8465 Msa1463550:CDS 60.0%
GGGTACCCTGTGGATGAGCT+TGG + tig0043375:8936-8955 Msa1463550:intergenic 60.0%
! AGCTCATCCACAGGGTACCC+TGG - tig0043375:8936-8955 Msa1463550:intron 60.0%
! GCTCATCCACAGGGTACCCT+GGG - tig0043375:8937-8956 Msa1463550:intron 60.0%
! TGTTCTCCCAGGGTACCCTG+TGG + tig0043375:8946-8965 Msa1463550:intergenic 60.0%
! TTGAGCTGTTTCCACGGCGG+TGG + tig0043375:9082-9101 Msa1463550:intergenic 60.0%
CGAGCCCGGTTGTGCGAATG+TGG - tig0043375:8030-8049 Msa1463550:three_prime_UTR 65.0%
! AAGGTAGCGGCTGCCTCGAG+AGG - tig0043375:8208-8227 Msa1463550:three_prime_UTR 65.0%
!! AGCCGGTGGTGCTGCCATTG+CGG - tig0043375:8333-8352 Msa1463550:CDS 65.0%
CGAGCCCGGTTGTGCGAATG+TGG - tig0043375:8030-8049 Msa1463550:three_prime_UTR 65.0%
! AAGGTAGCGGCTGCCTCGAG+AGG - tig0043375:8208-8227 Msa1463550:three_prime_UTR 65.0%
!! AGCCGGTGGTGCTGCCATTG+CGG - tig0043375:8333-8352 Msa1463550:CDS 65.0%
!! GCAGCACCACCGGCTTGACC+AGG + tig0043375:8328-8347 Msa1463550:intergenic 70.0%
!! GCAGCACCACCGGCTTGACC+AGG + tig0043375:8328-8347 Msa1463550:intergenic 70.0%
CCACGGCGGTGGCCGTCTAC+CGG + tig0043375:9071-9090 Msa1463550:intergenic 75.0%
CCACGGCGGTGGCCGTCTAC+CGG + tig0043375:9071-9090 Msa1463550:intergenic 75.0%
! CCGGTAGACGGCCACCGCCG+TGG - tig0043375:9068-9087 Msa1463550:intron 80.0%
! CCGGTAGACGGCCACCGCCG+TGG - tig0043375:9068-9087 Msa1463550:intron 80.0%
Chromosome Type Strat End Strand Name
tig0043375 gene 7971 9814 7971 ID=Msa1463550;Name=Msa1463550
tig0043375 mRNA 7971 9814 7971 ID=Msa1463550-mRNA-1;Parent=Msa1463550;Name=Msa1463550-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0|1|0.5|1|1|0.5|2|354|337
tig0043375 exon 7971 8926 7971 ID=Msa1463550-mRNA-1:exon:24107;Parent=Msa1463550-mRNA-1
tig0043375 exon 9403 9814 9403 ID=Msa1463550-mRNA-1:exon:24106;Parent=Msa1463550-mRNA-1
tig0043375 CDS 9403 9814 9403 ID=Msa1463550-mRNA-1:cds;Parent=Msa1463550-mRNA-1
tig0043375 CDS 8325 8926 8325 ID=Msa1463550-mRNA-1:cds;Parent=Msa1463550-mRNA-1
tig0043375 three_prime_UTR 7971 8324 7971 ID=Msa1463550-mRNA-1:three_prime_utr;Parent=Msa1463550-mRNA-1
Gene Sequence

>Msa1463550

ATTGCTTGTGGATACACAAGTCCACTACAAGGAATAGGGAAATATGCAAGGACTATTCACGAGCCCGGTTGTGCGAATGTGGCATGCAATGATGATAAGCAATTTGGGTCGGCTCTAAATGCAGCCCGTCAAGCGGATGCTACTGTTTTAGTGATGGGATTGGATCAGTCAATTGAGGCCGAAATGGTAGATAGGACTGGTTTACTTCTTCCTGGGCATCAACAAGACCTTGTTTCAAAGGTAGCGGCTGCCTCGAGAGGCCCAACCATTTTGGTCTTAATGTCTGGTGGGCCTATAGATATAACTTTTGCAAAGAATGATCCTCGAATTGTAGGCGTCTTGTGGGCTGGTTATCCTGGTCAAGCCGGTGGTGCTGCCATTGCGGATATATTGTTTGGAACCGCTAACCCAGGAGCTAAGTTACCTATGACATGGTACCCACAAGGATACCTTAAAAACTTGGCAATGACAGACATCGCAATGAGACCAAGCTCATCCACAGGGTACCCTGGGAGAACATATCGTTTTTACAACGGCCCTGTAGTGTATCCATTTGGTTATGGATTATCTTACACCAATTTTGTTCACACATTATCTAGTGCACCAAAAGTGGTCTCAGTTCCGGTAGACGGCCACCGCCGTGGAAACAGCTCAAACAAAGCAGCAATTAGAGTGACACATGCACGATGTGGCACGCTTTCCATTAGACTTGACATTGATGTTAAAAACATTGGTTCAAAAGATGGTACTAACACTTTGTTGGTGTTCTCAGTACCACCAGCAGGTAATGGTCAATGGGCACCACAAAAGCAACTAGTGGCTTTTGAGAAAGTCTATGTTCCTGCTAAGGCTCAGCAACGAGTGAGGATCGATATTCATGTATGTAAGCTTTTGAGTGTGGTTGATAAGTCTGGGACTAGGAGAATTCCAATGGGGGTACATAGTATTCACATTGGTGATGTTAAACACTTTGTATCACTTCAAGAACAAACACTAGGGACCATCAAGACTTGA
Protein sequence

>Msa1463550

IACGYTSPLQGIGKYARTIHEPGCANVACNDDKQFGSALNAARQADATVLVMGLDQSIEAEMVDRTGLLLPGHQQDLVSKVAAASRGPTILVLMSGGPIDITFAKNDPRIVGVLWAGYPGQAGGAAIADILFGTANPGAKLPMTWYPQGYLKNLAMTDIAMRPSSSTGYPGRTYRFYNGPVVYPFGYGLSYTNFVHTLSSAPKVVSVPVDGHRRGNSSNKAAIRVTHARCGTLSIRLDIDVKNIGSKDGTNTLLVFSVPPAGNGQWAPQKQLVAFEKVYVPAKAQQRVRIDIHVCKLLSVVDKSGTRRIPMGVHSIHIGDVKHFVSLQEQTLGTIKT*