Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1463620 | XP_029153014.1 | 44.162 | 197 | 28 | 3 | 1 | 115 | 377 | 573 | 2.55e-37 | 144 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1463620 | sp|O81832|Y4729_ARATH | 35.484 | 186 | 49 | 2 | 1 | 115 | 374 | 559 | 7.09e-26 | 103 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1463620 | A0A445DRQ2 | 43.750 | 192 | 31 | 3 | 1 | 116 | 1253 | 1443 | 1.80e-36 | 141 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1287560 | Msa1463620 | 0.813143 | 2.971728e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1463620 | MtrunA17_Chr4g0048691 | 84.746 | 59 | 9 | 0 | 1 | 59 | 401 | 459 | 4.27e-33 | 120 |
| Msa1463620 | MtrunA17_Chr4g0048681 | 94.737 | 57 | 3 | 0 | 1 | 57 | 145 | 201 | 1.52e-32 | 119 |
| Msa1463620 | MtrunA17_Chr4g0048681 | 48.936 | 94 | 20 | 1 | 54 | 119 | 290 | 383 | 6.45e-17 | 75.1 |
| Msa1463620 | MtrunA17_Chr4g0048641 | 77.941 | 68 | 9 | 1 | 1 | 62 | 371 | 438 | 2.85e-31 | 116 |
| Msa1463620 | MtrunA17_Chr4g0048641 | 50.000 | 86 | 15 | 1 | 54 | 111 | 493 | 578 | 4.36e-16 | 72.8 |
| Msa1463620 | MtrunA17_Chr4g0048761 | 76.471 | 68 | 16 | 0 | 1 | 68 | 395 | 462 | 4.90e-31 | 115 |
| Msa1463620 | MtrunA17_Chr4g0048761 | 51.111 | 90 | 16 | 1 | 54 | 115 | 540 | 629 | 7.22e-17 | 75.1 |
| Msa1463620 | MtrunA17_Chr4g0048721 | 76.812 | 69 | 13 | 2 | 1 | 68 | 385 | 451 | 7.93e-30 | 111 |
| Msa1463620 | MtrunA17_Chr4g0048791 | 71.875 | 64 | 18 | 0 | 1 | 64 | 394 | 457 | 4.74e-28 | 107 |
| Msa1463620 | MtrunA17_Chr4g0048741 | 69.118 | 68 | 19 | 1 | 1 | 68 | 395 | 460 | 1.33e-27 | 105 |
| Msa1463620 | MtrunA17_Chr4g0048741 | 47.778 | 90 | 19 | 1 | 54 | 115 | 538 | 627 | 7.30e-14 | 66.6 |
| Msa1463620 | MtrunA17_Chr3g0084681 | 34.054 | 185 | 52 | 4 | 1 | 115 | 375 | 559 | 4.88e-27 | 103 |
| Msa1463620 | MtrunA17_Chr4g0048651 | 78.000 | 50 | 11 | 0 | 7 | 56 | 407 | 456 | 2.80e-24 | 95.9 |
| Msa1463620 | MtrunA17_Chr7g0236161 | 35.000 | 180 | 39 | 5 | 1 | 107 | 383 | 557 | 1.41e-22 | 91.3 |
| Msa1463620 | MtrunA17_Chr7g0236201 | 35.000 | 180 | 39 | 5 | 1 | 107 | 383 | 557 | 1.55e-22 | 91.3 |
| Msa1463620 | MtrunA17_Chr4g0042381 | 31.868 | 182 | 57 | 3 | 1 | 115 | 367 | 548 | 4.23e-20 | 84.3 |
| Msa1463620 | MtrunA17_Chr4g0042351 | 31.868 | 182 | 57 | 3 | 1 | 115 | 367 | 548 | 8.42e-20 | 83.6 |
| Msa1463620 | MtrunA17_Chr4g0042391 | 32.418 | 182 | 56 | 4 | 1 | 115 | 367 | 548 | 1.04e-19 | 83.2 |
| Msa1463620 | MtrunA17_Chr4g0048661 | 53.333 | 90 | 14 | 1 | 54 | 115 | 43 | 132 | 1.14e-18 | 79.7 |
| Msa1463620 | MtrunA17_Chr8g0361301 | 53.448 | 58 | 27 | 0 | 1 | 58 | 372 | 429 | 1.25e-17 | 77.4 |
| Msa1463620 | MtrunA17_Chr8g0361261 | 53.448 | 58 | 27 | 0 | 1 | 58 | 403 | 460 | 1.44e-17 | 77.0 |
| Msa1463620 | MtrunA17_Chr8g0361251 | 53.448 | 58 | 27 | 0 | 1 | 58 | 372 | 429 | 5.92e-17 | 75.5 |
| Msa1463620 | MtrunA17_Chr3g0098791 | 50.909 | 55 | 27 | 0 | 1 | 55 | 374 | 428 | 1.11e-16 | 74.7 |
| Msa1463620 | MtrunA17_Chr2g0318811 | 56.364 | 55 | 24 | 0 | 1 | 55 | 367 | 421 | 1.30e-16 | 74.3 |
| Msa1463620 | MtrunA17_Chr8g0361311 | 52.727 | 55 | 26 | 0 | 1 | 55 | 372 | 426 | 1.84e-16 | 73.9 |
| Msa1463620 | MtrunA17_Chr3g0084451 | 52.727 | 55 | 26 | 0 | 1 | 55 | 372 | 426 | 3.97e-16 | 73.2 |
| Msa1463620 | MtrunA17_Chr2g0318841 | 46.575 | 73 | 28 | 1 | 1 | 62 | 367 | 439 | 5.11e-16 | 72.8 |
| Msa1463620 | MtrunA17_Chr3g0084621 | 52.727 | 55 | 26 | 0 | 1 | 55 | 375 | 429 | 5.58e-16 | 72.4 |
| Msa1463620 | MtrunA17_Chr2g0318831 | 56.364 | 55 | 24 | 0 | 1 | 55 | 370 | 424 | 7.11e-16 | 72.4 |
| Msa1463620 | MtrunA17_Chr8g0361441 | 51.786 | 56 | 27 | 0 | 1 | 56 | 376 | 431 | 1.05e-15 | 71.6 |
| Msa1463620 | MtrunA17_Chr6g0453571 | 52.727 | 55 | 26 | 0 | 1 | 55 | 211 | 265 | 1.13e-15 | 71.6 |
| Msa1463620 | MtrunA17_Chr3g0084491 | 52.727 | 55 | 26 | 0 | 1 | 55 | 387 | 441 | 1.74e-15 | 71.2 |
| Msa1463620 | MtrunA17_Chr3g0084431 | 50.000 | 58 | 29 | 0 | 1 | 58 | 369 | 426 | 1.89e-15 | 71.2 |
| Msa1463620 | MtrunA17_Chr3g0084651 | 50.000 | 56 | 28 | 0 | 1 | 56 | 375 | 430 | 2.52e-15 | 70.5 |
| Msa1463620 | MtrunA17_Chr3g0084441 | 47.273 | 55 | 29 | 0 | 1 | 55 | 378 | 432 | 2.69e-15 | 70.5 |
| Msa1463620 | MtrunA17_Chr3g0084691 | 42.308 | 78 | 34 | 1 | 1 | 67 | 373 | 450 | 3.14e-15 | 70.5 |
| Msa1463620 | MtrunA17_Chr8g0361281 | 51.020 | 49 | 24 | 0 | 1 | 49 | 375 | 423 | 1.75e-14 | 68.2 |
| Msa1463620 | MtrunA17_Chr4g0042361 | 47.170 | 53 | 28 | 0 | 1 | 53 | 413 | 465 | 5.15e-14 | 67.0 |
| Msa1463620 | MtrunA17_Chr3g0084421 | 45.455 | 55 | 30 | 0 | 1 | 55 | 334 | 388 | 6.09e-14 | 66.6 |
| Msa1463620 | MtrunA17_Chr2g0280691 | 43.548 | 62 | 30 | 1 | 1 | 57 | 371 | 432 | 9.95e-14 | 66.2 |
| Msa1463620 | MtrunA17_Chr4g0042401 | 46.552 | 58 | 31 | 0 | 1 | 58 | 375 | 432 | 1.14e-13 | 65.9 |
| Msa1463620 | MtrunA17_Chr2g0280681 | 50.877 | 57 | 28 | 0 | 1 | 57 | 373 | 429 | 2.34e-13 | 65.1 |
| Msa1463620 | MtrunA17_Chr3g0093161 | 50.000 | 56 | 27 | 1 | 1 | 56 | 369 | 423 | 2.92e-13 | 64.7 |
| Msa1463620 | MtrunA17_Chr4g0042441 | 47.273 | 55 | 29 | 0 | 1 | 55 | 374 | 428 | 3.58e-13 | 64.7 |
| Msa1463620 | MtrunA17_Chr5g0428111 | 50.980 | 51 | 25 | 0 | 1 | 51 | 378 | 428 | 5.02e-13 | 64.3 |
| Msa1463620 | MtrunA17_Chr2g0318941 | 33.108 | 148 | 35 | 3 | 1 | 120 | 62 | 173 | 5.28e-13 | 63.2 |
| Msa1463620 | MtrunA17_Chr4g0042341 | 46.154 | 52 | 28 | 0 | 1 | 52 | 381 | 432 | 8.41e-13 | 63.5 |
| Msa1463620 | MtrunA17_Chr3g0084411 | 49.091 | 55 | 27 | 1 | 1 | 55 | 372 | 425 | 1.19e-12 | 63.2 |
| Msa1463620 | MtrunA17_Chr7g0236521 | 48.333 | 60 | 27 | 1 | 1 | 60 | 356 | 411 | 1.73e-12 | 62.4 |
| Msa1463620 | MtrunA17_Chr7g0236691 | 39.175 | 97 | 47 | 2 | 1 | 89 | 376 | 468 | 1.86e-12 | 62.4 |
| Msa1463620 | MtrunA17_Chr3g0078551 | 50.980 | 51 | 25 | 0 | 1 | 51 | 386 | 436 | 2.29e-12 | 62.4 |
| Msa1463620 | MtrunA17_Chr2g0280711 | 52.727 | 55 | 26 | 0 | 1 | 55 | 378 | 432 | 2.45e-12 | 62.0 |
| Msa1463620 | MtrunA17_Chr7g0236231 | 34.653 | 101 | 54 | 4 | 1 | 94 | 383 | 478 | 4.17e-12 | 61.6 |
| Msa1463620 | MtrunA17_Chr7g0236121 | 50.000 | 56 | 22 | 2 | 1 | 55 | 383 | 433 | 1.13e-11 | 60.5 |
| Msa1463620 | MtrunA17_Chr7g0236341 | 50.909 | 55 | 23 | 1 | 1 | 55 | 371 | 421 | 1.34e-11 | 60.1 |
| Msa1463620 | MtrunA17_Chr4g0042421 | 39.394 | 66 | 36 | 1 | 1 | 66 | 375 | 436 | 2.06e-11 | 59.7 |
| Msa1463620 | MtrunA17_Chr4g0020081 | 50.877 | 57 | 23 | 3 | 1 | 56 | 370 | 422 | 3.55e-11 | 58.9 |
| Msa1463620 | MtrunA17_Chr4g0048801 | 46.429 | 56 | 29 | 1 | 1 | 56 | 377 | 431 | 3.84e-11 | 58.9 |
| Msa1463620 | MtrunA17_Chr7g0236641 | 47.273 | 55 | 25 | 1 | 1 | 55 | 377 | 427 | 4.54e-11 | 58.5 |
| Msa1463620 | MtrunA17_Chr7g0236511 | 49.091 | 55 | 24 | 1 | 1 | 55 | 382 | 432 | 9.53e-11 | 57.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1463620 | AT4G27290.1 | 35.484 | 186 | 49 | 2 | 1 | 115 | 374 | 559 | 7.21e-27 | 103 |
| Msa1463620 | AT4G27290.2 | 52.727 | 55 | 26 | 0 | 1 | 55 | 374 | 428 | 1.18e-16 | 74.7 |
| Msa1463620 | AT1G11410.3 | 50.000 | 58 | 27 | 1 | 1 | 56 | 348 | 405 | 1.84e-15 | 71.6 |
| Msa1463620 | AT1G11410.2 | 50.000 | 58 | 27 | 1 | 1 | 56 | 257 | 314 | 1.90e-15 | 71.6 |
| Msa1463620 | AT1G11410.1 | 50.000 | 58 | 27 | 1 | 1 | 56 | 372 | 429 | 2.20e-15 | 71.2 |
| Msa1463620 | AT1G11410.4 | 50.000 | 58 | 27 | 1 | 1 | 56 | 379 | 436 | 2.22e-15 | 71.2 |
| Msa1463620 | AT1G65800.2 | 54.000 | 50 | 23 | 0 | 1 | 50 | 376 | 425 | 3.20e-14 | 67.8 |
| Msa1463620 | AT1G65800.1 | 54.000 | 50 | 23 | 0 | 1 | 50 | 376 | 425 | 3.67e-14 | 67.8 |
| Msa1463620 | AT4G21380.1 | 45.455 | 55 | 30 | 0 | 1 | 55 | 378 | 432 | 3.86e-14 | 67.8 |
| Msa1463620 | AT4G21380.2 | 45.455 | 55 | 30 | 0 | 1 | 55 | 378 | 432 | 3.96e-14 | 67.8 |
| Msa1463620 | AT1G11340.2 | 46.552 | 58 | 29 | 1 | 1 | 56 | 437 | 494 | 8.37e-14 | 66.6 |
| Msa1463620 | AT1G11340.3 | 46.552 | 58 | 29 | 1 | 1 | 56 | 437 | 494 | 8.51e-14 | 66.6 |
| Msa1463620 | AT1G11340.1 | 46.552 | 58 | 29 | 1 | 1 | 56 | 369 | 426 | 1.15e-13 | 66.2 |
| Msa1463620 | AT1G65790.3 | 45.455 | 55 | 30 | 0 | 1 | 55 | 372 | 426 | 1.28e-13 | 66.2 |
| Msa1463620 | AT1G65790.2 | 45.455 | 55 | 30 | 0 | 1 | 55 | 372 | 426 | 1.28e-13 | 66.2 |
| Msa1463620 | AT1G65790.1 | 45.455 | 55 | 30 | 0 | 1 | 55 | 372 | 426 | 1.28e-13 | 66.2 |
| Msa1463620 | AT4G27300.1 | 49.123 | 57 | 27 | 1 | 1 | 55 | 378 | 434 | 3.95e-13 | 64.7 |
| Msa1463620 | AT1G11330.3 | 50.909 | 55 | 23 | 1 | 1 | 55 | 389 | 439 | 2.67e-11 | 59.7 |
| Msa1463620 | AT1G11330.2 | 50.909 | 55 | 23 | 1 | 1 | 55 | 389 | 439 | 2.67e-11 | 59.7 |
| Msa1463620 | AT1G11330.1 | 50.909 | 55 | 23 | 1 | 1 | 55 | 389 | 439 | 3.11e-11 | 59.3 |
| Msa1463620 | AT1G11300.2 | 33.708 | 89 | 52 | 2 | 1 | 89 | 379 | 460 | 4.07e-11 | 58.9 |
Find 18 sgRNAs with CRISPR-Local
Find 322 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTCAGGGTTGCTTGGTTAA+TGG | 0.229091 | tig0043495:+6884 | Msa1463620:intron |
| GGCATGGCATGGGGATTTAA+TGG | 0.267684 | tig0043495:+261 | Msa1463620:CDS |
| CCTCACATCAGCAATTGAAT+AGG | 0.434525 | tig0043495:-218 | Msa1463620:intergenic |
| GTGGATGCTTGGCATGGCAT+GGG | 0.445328 | tig0043495:+251 | Msa1463620:CDS |
| AGAAATATTTCAGGGTTGCT+TGG | 0.446423 | tig0043495:+6877 | Msa1463620:intron |
| AGTGGATGCTTGGCATGGCA+TGG | 0.471935 | tig0043495:+250 | Msa1463620:CDS |
| CGACGCGTAGAAATAAATCT+TGG | 0.496886 | tig0043495:-309 | Msa1463620:intergenic |
| CGCGTCGATAAAATTGAACT+AGG | 0.511168 | tig0043495:+325 | Msa1463620:CDS |
| TACTGAATATAAAGAAGTCC+AGG | 0.524944 | tig0043495:-6997 | Msa1463620:intergenic |
| ATACTTACCAAACAAAAGCC+TGG | 0.536720 | tig0043495:+6979 | Msa1463620:CDS |
| GATGTGAGGAATGGTGGAAG+TGG | 0.540161 | tig0043495:+232 | Msa1463620:CDS |
| CAGGTCAAGGAAAAGAAGAA+AGG | 0.545367 | tig0043495:+6942 | Msa1463620:CDS |
| GAATGGTGGAAGTGGATGCT+TGG | 0.585091 | tig0043495:+240 | Msa1463620:CDS |
| ATTGCTGATGTGAGGAATGG+TGG | 0.606147 | tig0043495:+226 | Msa1463620:CDS |
| TGGATGCTTGGCATGGCATG+GGG | 0.616708 | tig0043495:+252 | Msa1463620:CDS |
| TCAATTGCTGATGTGAGGAA+TGG | 0.650268 | tig0043495:+223 | Msa1463620:CDS |
| CCTATTCAATTGCTGATGTG+AGG | 0.663437 | tig0043495:+218 | Msa1463620:CDS |
| GTGGAAGTGGATGCTTGGCA+TGG | 0.667666 | tig0043495:+245 | Msa1463620:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTCAAATTTATAATGATTA+AGG | - | tig0043495:1662-1681 | Msa1463620:intergenic | 10.0% |
| !!! | AATAAAAAAACTTCAAATTT+TGG | + | tig0043495:1922-1941 | Msa1463620:intron | 10.0% |
| !!! | ATAAAAAAACTTCAAATTTT+GGG | + | tig0043495:1923-1942 | Msa1463620:intron | 10.0% |
| !! | AAAATTGATACAAAATATAA+TGG | - | tig0043495:2953-2972 | Msa1463620:intergenic | 10.0% |
| !!! | TTTATATATATTTTTGTTAC+AGG | + | tig0043495:3085-3104 | Msa1463620:intron | 10.0% |
| !!! | TTATTTGAAGTTTAATTAAA+TGG | + | tig0043495:3173-3192 | Msa1463620:intron | 10.0% |
| !! | CAATTTATCAATAAAATTTA+AGG | + | tig0043495:3593-3612 | Msa1463620:intron | 10.0% |
| !! | AGTAATTAATATAAAGAACA+TGG | - | tig0043495:627-646 | Msa1463620:intergenic | 15.0% |
| !!! | TCAATTTTTTATTTTTGATC+TGG | + | tig0043495:1408-1427 | Msa1463620:intron | 15.0% |
| !! | CAAACAATGATATTAAAATT+TGG | - | tig0043495:1496-1515 | Msa1463620:intergenic | 15.0% |
| !!! | AAATACAAATTTTGTTGTTT+TGG | + | tig0043495:1768-1787 | Msa1463620:intron | 15.0% |
| !!! | TAAAAAAACTTCAAATTTTG+GGG | + | tig0043495:1924-1943 | Msa1463620:intron | 15.0% |
| !!! | TTTAAAAGTTACAATTTTGT+TGG | + | tig0043495:2028-2047 | Msa1463620:intron | 15.0% |
| !! | AATTTATGCAAAAAAAGTAA+GGG | - | tig0043495:2203-2222 | Msa1463620:intergenic | 15.0% |
| !!! | AAACATTGATTGATTTTAAT+GGG | + | tig0043495:2248-2267 | Msa1463620:intron | 15.0% |
| !! | TGAAAGTTAAATTCAAAAAT+TGG | + | tig0043495:2349-2368 | Msa1463620:intron | 15.0% |
| !! | GTAAAAAAAAATAGACAAAA+CGG | - | tig0043495:3495-3514 | Msa1463620:intergenic | 15.0% |
| !!! | ATTTTCATCTCTATTAATAA+TGG | + | tig0043495:3530-3549 | Msa1463620:intron | 15.0% |
| !!! | ATAAAATTTAAGGTTGTTTA+AGG | + | tig0043495:3603-3622 | Msa1463620:intron | 15.0% |
| !!! | TTCTTTTCATTTCTAATTTA+TGG | - | tig0043495:3741-3760 | Msa1463620:intergenic | 15.0% |
| !! | AAATAAAATTATTCAACATG+TGG | - | tig0043495:4004-4023 | Msa1463620:intergenic | 15.0% |
| !!! | ATGTTTTTTTTACTTTTGAT+TGG | + | tig0043495:4357-4376 | Msa1463620:intron | 15.0% |
| !! | CTAACTATTAATGATAATAA+GGG | - | tig0043495:4586-4605 | Msa1463620:intergenic | 15.0% |
| !! | ACTAACTATTAATGATAATA+AGG | - | tig0043495:4587-4606 | Msa1463620:intergenic | 15.0% |
| !! | TTTATATATAGATGTTGATA+TGG | - | tig0043495:5526-5545 | Msa1463620:intergenic | 15.0% |
| !! | TTTACAACTTATTAAAATGA+TGG | - | tig0043495:5893-5912 | Msa1463620:intergenic | 15.0% |
| !!! | TTTATAAGGATTATGTTTTT+TGG | + | tig0043495:6002-6021 | Msa1463620:intron | 15.0% |
| !! | AAGTAGTCATTAATTATTAT+TGG | + | tig0043495:6074-6093 | Msa1463620:intron | 15.0% |
| !!! | ATTTTAGTTATTAGACAAAT+TGG | - | tig0043495:6181-6200 | Msa1463620:intergenic | 15.0% |
| !!! | AATATATGTTTGTATTTTAG+CGG | + | tig0043495:6198-6217 | Msa1463620:intron | 15.0% |
| !! | ATTTAATAGAGAAATATTTC+AGG | + | tig0043495:6868-6887 | Msa1463620:intron | 15.0% |
| !! | TTTAATAGAGAAATATTTCA+GGG | + | tig0043495:6869-6888 | Msa1463620:intron | 15.0% |
| !! | ATTCAAAAACTTAATGATCA+AGG | + | tig0043495:286-305 | Msa1463620:CDS | 20.0% |
| !!! | ATTTCTTTTTCTGTAGTATT+TGG | - | tig0043495:439-458 | Msa1463620:intergenic | 20.0% |
| !! | AAATACTACAGAAAAAGAAA+TGG | + | tig0043495:438-457 | Msa1463620:intron | 20.0% |
| !! | AGTAATTAATAGAAAGAACA+TGG | - | tig0043495:598-617 | Msa1463620:intergenic | 20.0% |
| !! | ATCTTAATAATATACAAGCA+TGG | + | tig0043495:699-718 | Msa1463620:intron | 20.0% |
| !! | TATTGTGTAAATGCTTAAAA+TGG | - | tig0043495:820-839 | Msa1463620:intergenic | 20.0% |
| !!! | TTTGAATTTTGAATTGAAGA+GGG | - | tig0043495:874-893 | Msa1463620:intergenic | 20.0% |
| !!! | ATTTGAATTTTGAATTGAAG+AGG | - | tig0043495:875-894 | Msa1463620:intergenic | 20.0% |
| !!! | AAAAAACGAAAAAATGGATT+TGG | - | tig0043495:1309-1328 | Msa1463620:intergenic | 20.0% |
| !! | GAATCAAAAAAACGAAAAAA+TGG | - | tig0043495:1315-1334 | Msa1463620:intergenic | 20.0% |
| !! | GAATTTATGCAAAAAAAGTA+AGG | - | tig0043495:2204-2223 | Msa1463620:intergenic | 20.0% |
| !!! | ACTTTTTTTGCATAAATTCA+TGG | + | tig0043495:2205-2224 | Msa1463620:intron | 20.0% |
| !!! | GAAACATTGATTGATTTTAA+TGG | + | tig0043495:2247-2266 | Msa1463620:intron | 20.0% |
| !! | AATTCTAAACACAAACAAAT+AGG | + | tig0043495:2425-2444 | Msa1463620:intron | 20.0% |
| !!! | AGAAGTAATTTGCTAATTTT+TGG | + | tig0043495:2633-2652 | Msa1463620:intron | 20.0% |
| !! | ATTGAAACAAAATGAATGAA+AGG | - | tig0043495:2918-2937 | Msa1463620:intergenic | 20.0% |
| !!! | TTTCAGTGAAAATAAACTTT+TGG | - | tig0043495:2996-3015 | Msa1463620:intergenic | 20.0% |
| !!! | AATTAAATGGTTTTATGATG+TGG | + | tig0043495:3186-3205 | Msa1463620:intron | 20.0% |
| !! | TTCAGTAATATACAAATTTC+AGG | + | tig0043495:3288-3307 | Msa1463620:intron | 20.0% |
| !!! | TAATATACAAATTTCAGGTT+AGG | + | tig0043495:3293-3312 | Msa1463620:intron | 20.0% |
| !!! | TATATCAAAGATTTTGTAGA+AGG | + | tig0043495:3439-3458 | Msa1463620:intron | 20.0% |
| !! | CACTATTAATTAATAACCAA+GGG | - | tig0043495:3936-3955 | Msa1463620:intergenic | 20.0% |
| !! | TCACTATTAATTAATAACCA+AGG | - | tig0043495:3937-3956 | Msa1463620:intergenic | 20.0% |
| !!! | AGACTTTACTATTTTTCATT+TGG | + | tig0043495:4081-4100 | Msa1463620:intron | 20.0% |
| !!! | GACTTTACTATTTTTCATTT+GGG | + | tig0043495:4082-4101 | Msa1463620:intron | 20.0% |
| !! | TTATTGTTAAACTGAAAAAG+AGG | - | tig0043495:4145-4164 | Msa1463620:intergenic | 20.0% |
| !! | AAATGAATATAATCATAGTC+CGG | - | tig0043495:4242-4261 | Msa1463620:intergenic | 20.0% |
| !!! | TTTAAAAAGTATTGACATTC+TGG | + | tig0043495:4465-4484 | Msa1463620:intron | 20.0% |
| !!! | ACATTTTACATTTCTAAGAA+CGG | + | tig0043495:4560-4579 | Msa1463620:intron | 20.0% |
| !!! | TGTTTTTAGTTTAAGTTGTT+GGG | + | tig0043495:4713-4732 | Msa1463620:intron | 20.0% |
| !! | TAAAAGAATCAGACAATAAA+AGG | - | tig0043495:4956-4975 | Msa1463620:intergenic | 20.0% |
| !! | TATTCAAGATATAAACCATA+AGG | + | tig0043495:5020-5039 | Msa1463620:intron | 20.0% |
| !! | TATAAAACAAAGTTACCTTA+TGG | - | tig0043495:5038-5057 | Msa1463620:intergenic | 20.0% |
| !! | TTATACTTAAATGTCCAAAA+AGG | - | tig0043495:5149-5168 | Msa1463620:intergenic | 20.0% |
| !! | TATGAACTATTAATATCCAA+AGG | - | tig0043495:5602-5621 | Msa1463620:intergenic | 20.0% |
| !!! | TTATTATAATCGAATTTTGC+AGG | + | tig0043495:5638-5657 | Msa1463620:intron | 20.0% |
| !! | GAAAAATACAAAAATTACAG+AGG | - | tig0043495:5740-5759 | Msa1463620:intergenic | 20.0% |
| !!! | ATCTCAGAGTTTAATTTATA+AGG | + | tig0043495:5988-6007 | Msa1463620:intron | 20.0% |
| !! | TCATTAATTATTATTGGTCA+GGG | + | tig0043495:6080-6099 | Msa1463620:intron | 20.0% |
| !!! | TTTTTATCTGAAGTTACAAA+TGG | - | tig0043495:6565-6584 | Msa1463620:intergenic | 20.0% |
| !! | ATGATGCAAAAATAATGAAA+TGG | + | tig0043495:6844-6863 | Msa1463620:intron | 20.0% |
| !! | TGATGCAAAAATAATGAAAT+GGG | + | tig0043495:6845-6864 | Msa1463620:intron | 20.0% |
| ! | TTTGGAAAGAAAAACACAAT+AGG | - | tig0043495:364-383 | Msa1463620:intergenic | 25.0% |
| ! | AAGTTCAAAATACACCTTAA+AGG | - | tig0043495:394-413 | Msa1463620:intergenic | 25.0% |
| !!! | GGGTATGTGATTTATTTTTT+AGG | + | tig0043495:564-583 | Msa1463620:intron | 25.0% |
| ! | TATAGAAAGTGATGTTTGTT+GGG | - | tig0043495:944-963 | Msa1463620:intergenic | 25.0% |
| ! | ATATAGAAAGTGATGTTTGT+TGG | - | tig0043495:945-964 | Msa1463620:intergenic | 25.0% |
| ! | TCTTAACATAACATTAGATC+AGG | - | tig0043495:1337-1356 | Msa1463620:intergenic | 25.0% |
| !!! | AATGCAACTTTATTTGTTGT+AGG | + | tig0043495:1680-1699 | Msa1463620:intron | 25.0% |
| !!! | ATTTTGTTGTTTTGGTCATT+TGG | + | tig0043495:1776-1795 | Msa1463620:intron | 25.0% |
| !! | ATTTCTGAAAAAGCAATGAA+AGG | - | tig0043495:2152-2171 | Msa1463620:intergenic | 25.0% |
| !!! | TGCTTTTTCAGAAATTCAAA+AGG | + | tig0043495:2157-2176 | Msa1463620:intron | 25.0% |
| !!! | GCTTTTTCAGAAATTCAAAA+GGG | + | tig0043495:2158-2177 | Msa1463620:intron | 25.0% |
| ! | AAATTCATGGTATCTATAAG+AGG | + | tig0043495:2218-2237 | Msa1463620:intron | 25.0% |
| !!! | GGACATTGATTGATTTTAAT+GGG | + | tig0043495:2269-2288 | Msa1463620:intron | 25.0% |
| !! | AAAACTTAAGTCTCTTTTTG+AGG | + | tig0043495:2481-2500 | Msa1463620:intron | 25.0% |
| !! | AAACTTAAGTCTCTTTTTGA+GGG | + | tig0043495:2482-2501 | Msa1463620:intron | 25.0% |
| ! | AGACTAGATAATTCTTTCTT+TGG | + | tig0043495:2719-2738 | Msa1463620:intron | 25.0% |
| ! | GATAATTCTTTCTTTGGTAA+AGG | + | tig0043495:2725-2744 | Msa1463620:intron | 25.0% |
| ! | TCACTGAAATTGTTTAATGT+AGG | + | tig0043495:3007-3026 | Msa1463620:intron | 25.0% |
| !! | TTTTCATTGTAGTTGATCAA+AGG | + | tig0043495:3350-3369 | Msa1463620:intron | 25.0% |
| ! | AAATCTTTGATATAGCATCA+TGG | - | tig0043495:3433-3452 | Msa1463620:intergenic | 25.0% |
| ! | TGCGAAGAAAATTTAGAAAA+TGG | - | tig0043495:3465-3484 | Msa1463620:intergenic | 25.0% |
| !! | GAAAAGAATTTTATCTTGAG+AGG | + | tig0043495:3753-3772 | Msa1463620:intron | 25.0% |
| ! | TATTTGTCTCTCTTTACTAT+AGG | + | tig0043495:4019-4038 | Msa1463620:intron | 25.0% |
| ! | ATTTGTCTCTCTTTACTATA+GGG | + | tig0043495:4020-4039 | Msa1463620:intron | 25.0% |
| !! | CTAAATGAGATAATTTTTGC+CGG | + | tig0043495:4220-4239 | Msa1463620:intron | 25.0% |
| !!! | CTGTTTTTAGTTTAAGTTGT+TGG | + | tig0043495:4712-4731 | Msa1463620:intron | 25.0% |
| !!! | GTTTTTAGTTTAAGTTGTTG+GGG | + | tig0043495:4714-4733 | Msa1463620:intron | 25.0% |
| ! | ATTGGATACCATAACTAAAT+AGG | - | tig0043495:4746-4765 | Msa1463620:intergenic | 25.0% |
| ! | ATAAAAGGCAATGTCAATTT+CGG | - | tig0043495:4941-4960 | Msa1463620:intergenic | 25.0% |
| ! | ATACCATGACATAATAACAT+TGG | + | tig0043495:5068-5087 | Msa1463620:intron | 25.0% |
| ! | ATAACATTGGAGATAATTAG+TGG | + | tig0043495:5081-5100 | Msa1463620:intron | 25.0% |
| ! | TAACATTGGAGATAATTAGT+GGG | + | tig0043495:5082-5101 | Msa1463620:intron | 25.0% |
| ! | AATTAGTGGGAATAAGATTA+AGG | + | tig0043495:5095-5114 | Msa1463620:intron | 25.0% |
| ! | ATTAGTGGGAATAAGATTAA+GGG | + | tig0043495:5096-5115 | Msa1463620:intron | 25.0% |
| !! | TATCAGTGTACACATTTTAT+TGG | - | tig0043495:5436-5455 | Msa1463620:intergenic | 25.0% |
| ! | ACTATTAATATCCAAAGGAA+AGG | - | tig0043495:5597-5616 | Msa1463620:intergenic | 25.0% |
| ! | TATTTCCTTTCTTACTTTGT+CGG | + | tig0043495:5683-5702 | Msa1463620:intron | 25.0% |
| ! | ATACAAAAATTACAGAGGAA+AGG | - | tig0043495:5735-5754 | Msa1463620:intergenic | 25.0% |
| !!! | GAGTTTTATAACACAAAATC+CGG | - | tig0043495:5869-5888 | Msa1463620:intergenic | 25.0% |
| ! | GTTATCATCTATCATTCATT+AGG | + | tig0043495:5936-5955 | Msa1463620:intron | 25.0% |
| ! | GTCATTAATTATTATTGGTC+AGG | + | tig0043495:6079-6098 | Msa1463620:intron | 25.0% |
| ! | CAAAACATTGATATACCATA+TGG | - | tig0043495:6352-6371 | Msa1463620:intergenic | 25.0% |
| !!! | TTGAAGGGTATATTTCTTTT+TGG | - | tig0043495:6510-6529 | Msa1463620:intergenic | 25.0% |
| !! | ATCAACTAACACATTTTGAA+GGG | - | tig0043495:6525-6544 | Msa1463620:intergenic | 25.0% |
| !! | AATCAACTAACACATTTTGA+AGG | - | tig0043495:6526-6545 | Msa1463620:intergenic | 25.0% |
| !!! | ATCGTTTTAAAGCTGAAAAA+GGG | - | tig0043495:6664-6683 | Msa1463620:intergenic | 25.0% |
| !!! | TATCGTTTTAAAGCTGAAAA+AGG | - | tig0043495:6665-6684 | Msa1463620:intergenic | 25.0% |
| ! | CTATTGAAATGAACATAAAG+AGG | - | tig0043495:6810-6829 | Msa1463620:intergenic | 25.0% |
| ! | AAAAGATTGTCGAAAAATTC+AGG | + | tig0043495:6923-6942 | Msa1463620:CDS | 25.0% |
| GAAAGAAAAACACAATAGGA+GGG | - | tig0043495:360-379 | Msa1463620:intergenic | 30.0% | |
| ! | TGTGTTTTTCTTTCCAAAGT+TGG | + | tig0043495:366-385 | Msa1463620:intron | 30.0% |
| TGGAGTTCTTGATAAAAAAG+AGG | + | tig0043495:458-477 | Msa1463620:intron | 30.0% | |
| GTTCTTGATAAAAAAGAGGT+TGG | + | tig0043495:462-481 | Msa1463620:intron | 30.0% | |
| ACTACATGTGGAAGAAAAAA+AGG | + | tig0043495:539-558 | Msa1463620:intron | 30.0% | |
| CTACATGTGGAAGAAAAAAA+GGG | + | tig0043495:540-559 | Msa1463620:intron | 30.0% | |
| AAAAGGAAAGAAGTTTAGAG+TGG | - | tig0043495:982-1001 | Msa1463620:intergenic | 30.0% | |
| GATAGAATGTGAGGAAAAAA+AGG | - | tig0043495:999-1018 | Msa1463620:intergenic | 30.0% | |
| ! | GTTCCATGCTTGTATATTTT+TGG | - | tig0043495:1142-1161 | Msa1463620:intergenic | 30.0% |
| TGATCAAGGAAAAAATGAGT+GGG | - | tig0043495:1224-1243 | Msa1463620:intergenic | 30.0% | |
| !! | TGATCTGGAATTTTCATCAT+TGG | + | tig0043495:1423-1442 | Msa1463620:intron | 30.0% |
| !! | TTGGTCATTTGGTCTTAAAT+TGG | + | tig0043495:1787-1806 | Msa1463620:intron | 30.0% |
| CATCTCATAATTAAGTGAGA+AGG | - | tig0043495:2086-2105 | Msa1463620:intergenic | 30.0% | |
| CACACAAACCAAGAAATTAA+AGG | - | tig0043495:2124-2143 | Msa1463620:intergenic | 30.0% | |
| ATGGTATCTATAAGAGGTAA+TGG | + | tig0043495:2224-2243 | Msa1463620:intron | 30.0% | |
| TGGTATCTATAAGAGGTAAT+GGG | + | tig0043495:2225-2244 | Msa1463620:intron | 30.0% | |
| !! | GGGACATTGATTGATTTTAA+TGG | + | tig0043495:2268-2287 | Msa1463620:intron | 30.0% |
| ATTGGAGAGAAGTTTGATAA+TGG | + | tig0043495:2367-2386 | Msa1463620:intron | 30.0% | |
| CTTCACAAAAGAAGCTAATA+GGG | - | tig0043495:2764-2783 | Msa1463620:intergenic | 30.0% | |
| ACTTCACAAAAGAAGCTAAT+AGG | - | tig0043495:2765-2784 | Msa1463620:intergenic | 30.0% | |
| ! | AGGTTTCGCTTTAAGTTATT+TGG | + | tig0043495:3027-3046 | Msa1463620:intron | 30.0% |
| ! | TCAATTCTTTTCAGTTGTGA+TGG | + | tig0043495:3109-3128 | Msa1463620:CDS | 30.0% |
| !!! | TAAATGGTTTTATGATGTGG+AGG | + | tig0043495:3189-3208 | Msa1463620:intron | 30.0% |
| ATAAATTGATCCTGCAACAA+AGG | - | tig0043495:3239-3258 | Msa1463620:intergenic | 30.0% | |
| AGAAATGAACCAAAAGACAA+AGG | - | tig0043495:3321-3340 | Msa1463620:intergenic | 30.0% | |
| !!! | ATCAAAGGTGTGCATTTTTT+TGG | + | tig0043495:3365-3384 | Msa1463620:intron | 30.0% |
| ! | TTTCTAAATTTTCTTCGCAC+TGG | + | tig0043495:3466-3485 | Msa1463620:intron | 30.0% |
| TTCCAGAATATGTAATGAGT+GGG | - | tig0043495:4621-4640 | Msa1463620:intergenic | 30.0% | |
| ! | CATTACATATTCTGGAAGTA+TGG | + | tig0043495:4624-4643 | Msa1463620:intron | 30.0% |
| GAATCATATTAAGAGAGAAG+AGG | - | tig0043495:4783-4802 | Msa1463620:intergenic | 30.0% | |
| CTCTTAATATGATTCTTCGA+AGG | + | tig0043495:4788-4807 | Msa1463620:intron | 30.0% | |
| TTCATGGACAATTTCTTTAG+TGG | - | tig0043495:4885-4904 | Msa1463620:intergenic | 30.0% | |
| ACTAAAGAAATTGTCCATGA+AGG | + | tig0043495:4884-4903 | Msa1463620:intron | 30.0% | |
| TCTCCAATGTTATTATGTCA+TGG | - | tig0043495:5074-5093 | Msa1463620:intergenic | 30.0% | |
| TTAGTGGGAATAAGATTAAG+GGG | + | tig0043495:5097-5116 | Msa1463620:intron | 30.0% | |
| TACCTATTTGAATTGTGTCA+CGG | + | tig0043495:5183-5202 | Msa1463620:intron | 30.0% | |
| !! | CATTTGATTTGAGGATAAAG+AGG | - | tig0043495:5371-5390 | Msa1463620:intergenic | 30.0% |
| !! | AATGTCACTTGCAAATTTTG+AGG | + | tig0043495:5387-5406 | Msa1463620:intron | 30.0% |
| TCTAGTTAAAGCGTATACAT+AGG | - | tig0043495:5573-5592 | Msa1463620:intergenic | 30.0% | |
| ATAAACCGACAAAGTAAGAA+AGG | - | tig0043495:5691-5710 | Msa1463620:intergenic | 30.0% | |
| !!! | CTTTGTCGGTTTATATTTTG+AGG | + | tig0043495:5697-5716 | Msa1463620:intron | 30.0% |
| ATATGAACTTTCCTAATGCT+CGG | + | tig0043495:5790-5809 | Msa1463620:intron | 30.0% | |
| ! | TATTGCAAGTGGACTTAAAT+GGG | - | tig0043495:5969-5988 | Msa1463620:intergenic | 30.0% |
| ! | ATATTGCAAGTGGACTTAAA+TGG | - | tig0043495:5970-5989 | Msa1463620:intergenic | 30.0% |
| TTGTCTTGCAAATGTAATGA+TGG | - | tig0043495:6455-6474 | Msa1463620:intergenic | 30.0% | |
| TACTGAATATAAAGAAGTCC+AGG | - | tig0043495:7000-7019 | Msa1463620:intergenic | 30.0% | |
| GGAAAGAAAAACACAATAGG+AGG | - | tig0043495:361-380 | Msa1463620:intergenic | 35.0% | |
| ! | CTTTTTCTGTAGTATTTGGC+TGG | - | tig0043495:435-454 | Msa1463620:intergenic | 35.0% |
| ATGTGGAAGAAAAAAAGGGA+GGG | + | tig0043495:544-563 | Msa1463620:intron | 35.0% | |
| ! | AATGATGATGTGACATGTAG+TGG | - | tig0043495:777-796 | Msa1463620:intergenic | 35.0% |
| GGATAAGAGAAAATGTAGGA+GGG | - | tig0043495:923-942 | Msa1463620:intergenic | 35.0% | |
| GTTGGGATAAGAGAAAATGT+AGG | - | tig0043495:927-946 | Msa1463620:intergenic | 35.0% | |
| TTAGAGTGGATGAGAGATAA+AGG | - | tig0043495:968-987 | Msa1463620:intergenic | 35.0% | |
| AGAAAGAAGGTAGAGAGAAA+GGG | - | tig0043495:1099-1118 | Msa1463620:intergenic | 35.0% | |
| AAGAAAGAAGGTAGAGAGAA+AGG | - | tig0043495:1100-1119 | Msa1463620:intergenic | 35.0% | |
| TGATCGGAAATGAAGAAAGA+AGG | - | tig0043495:1112-1131 | Msa1463620:intergenic | 35.0% | |
| !!! | ATGCTTGTATATTTTTGGCC+GGG | - | tig0043495:1137-1156 | Msa1463620:intergenic | 35.0% |
| !!! | CATGCTTGTATATTTTTGGC+CGG | - | tig0043495:1138-1157 | Msa1463620:intergenic | 35.0% |
| !! | AAAATGAGTGGGTTTTGTAG+AGG | - | tig0043495:1213-1232 | Msa1463620:intergenic | 35.0% |
| CTGATCAAGGAAAAAATGAG+TGG | - | tig0043495:1225-1244 | Msa1463620:intergenic | 35.0% | |
| GTCATATTACGTAGTCATTC+CGG | - | tig0043495:1266-1285 | Msa1463620:intergenic | 35.0% | |
| GAATGACTACGTAATATGAC+AGG | + | tig0043495:1266-1285 | Msa1463620:intron | 35.0% | |
| TTGAAGACAAAGAGCTCATT+AGG | - | tig0043495:1981-2000 | Msa1463620:intergenic | 35.0% | |
| ! | CTCGACTTCCTTTAATTTCT+TGG | + | tig0043495:2113-2132 | Msa1463620:intron | 35.0% |
| CAGAAATTCAAAAGGGATGA+AGG | + | tig0043495:2165-2184 | Msa1463620:intron | 35.0% | |
| AAACACAAACAAATAGGCAC+AGG | + | tig0043495:2431-2450 | Msa1463620:intron | 35.0% | |
| TTGTTGAGTTACTCTTGTGT+AGG | - | tig0043495:2571-2590 | Msa1463620:intergenic | 35.0% | |
| !! | TCTTTTCAGTTGTGATGGAA+AGG | + | tig0043495:3114-3133 | Msa1463620:CDS | 35.0% |
| GATTAAGCATAAAACCAGCA+AGG | - | tig0043495:3411-3430 | Msa1463620:intergenic | 35.0% | |
| !! | TAGAAGTACTGCTTGATGTT+TGG | + | tig0043495:3800-3819 | Msa1463620:intron | 35.0% |
| !! | GCTTTTCTTTTTTGCAAGAG+AGG | + | tig0043495:4104-4123 | Msa1463620:intron | 35.0% |
| GTCAGTAGTATGTCAACATA+TGG | + | tig0043495:4328-4347 | Msa1463620:intron | 35.0% | |
| CTTCCAGAATATGTAATGAG+TGG | - | tig0043495:4622-4641 | Msa1463620:intergenic | 35.0% | |
| GGTCAGTTCCTATTTAGTTA+TGG | + | tig0043495:4735-4754 | Msa1463620:intron | 35.0% | |
| GGTATCCAATTCAGTAAATG+AGG | + | tig0043495:4756-4775 | Msa1463620:intron | 35.0% | |
| !! | AAAGGTTGAGAGAGTGTTAT+GGG | - | tig0043495:5131-5150 | Msa1463620:intergenic | 35.0% |
| !! | AAAAGGTTGAGAGAGTGTTA+TGG | - | tig0043495:5132-5151 | Msa1463620:intergenic | 35.0% |
| ! | TAACACTCTCTCAACCTTTT+TGG | + | tig0043495:5132-5151 | Msa1463620:intron | 35.0% |
| TGTGTATCTAGTAGTTGCAA+TGG | - | tig0043495:5242-5261 | Msa1463620:intergenic | 35.0% | |
| ATCGTATGACTTGAGAAGAA+AGG | - | tig0043495:5280-5299 | Msa1463620:intergenic | 35.0% | |
| !! | TGCAAGTGACATTTGATTTG+AGG | - | tig0043495:5380-5399 | Msa1463620:intergenic | 35.0% |
| GAAGCTAAAACGATATTCAC+AGG | - | tig0043495:5504-5523 | Msa1463620:intergenic | 35.0% | |
| GTTCATGAGAAACGAACATT+TGG | - | tig0043495:5551-5570 | Msa1463620:intergenic | 35.0% | |
| TTTAACTAGAGCCTTTCCTT+TGG | + | tig0043495:5583-5602 | Msa1463620:intron | 35.0% | |
| TTGAAAAGAAACCGAGCATT+AGG | - | tig0043495:5804-5823 | Msa1463620:intergenic | 35.0% | |
| GTGAAAGATGCAAATGAACA+CGG | + | tig0043495:5832-5851 | Msa1463620:intron | 35.0% | |
| !! | AAACTCTGAGATATTGCAAG+TGG | - | tig0043495:5980-5999 | Msa1463620:intergenic | 35.0% |
| GTTTGTTTAGTGTCAGTTTG+TGG | + | tig0043495:6300-6319 | Msa1463620:intron | 35.0% | |
| TGTGGTGTTCAACTATTACA+TGG | + | tig0043495:6318-6337 | Msa1463620:intron | 35.0% | |
| ! | TAGCACTTGTTGAAGAAACT+AGG | - | tig0043495:6387-6406 | Msa1463620:intergenic | 35.0% |
| CAATTAAACCAAGATTCCTC+TGG | + | tig0043495:6598-6617 | Msa1463620:intron | 35.0% | |
| AAGCTGAAAAAGGGTAGATT+TGG | - | tig0043495:6655-6674 | Msa1463620:intergenic | 35.0% | |
| TGTGATCATGAGAATAAGCT+TGG | + | tig0043495:6703-6722 | Msa1463620:intron | 35.0% | |
| AGAAATATTTCAGGGTTGCT+TGG | + | tig0043495:6877-6896 | Msa1463620:intron | 35.0% | |
| TTGTCGAAAAATTCAGGTCA+AGG | + | tig0043495:6929-6948 | Msa1463620:CDS | 35.0% | |
| ATACTTACCAAACAAAAGCC+TGG | + | tig0043495:6979-6998 | Msa1463620:CDS | 35.0% | |
| CCTCACATCAGCAATTGAAT+AGG | - | tig0043495:221-240 | None:intergenic | 40.0% | |
| CCTATTCAATTGCTGATGTG+AGG | + | tig0043495:218-237 | Msa1463620:CDS | 40.0% | |
| TCAATTGCTGATGTGAGGAA+TGG | + | tig0043495:223-242 | Msa1463620:CDS | 40.0% | |
| CGACGCGTAGAAATAAATCT+TGG | - | tig0043495:312-331 | Msa1463620:intergenic | 40.0% | |
| ! | CGCGTCGATAAAATTGAACT+AGG | + | tig0043495:325-344 | Msa1463620:CDS | 40.0% |
| CATGTGGAAGAAAAAAAGGG+AGG | + | tig0043495:543-562 | Msa1463620:intron | 40.0% | |
| GGGATAAGAGAAAATGTAGG+AGG | - | tig0043495:924-943 | Msa1463620:intergenic | 40.0% | |
| TGTGTGTGAGATAGAATGTG+AGG | - | tig0043495:1008-1027 | Msa1463620:intergenic | 40.0% | |
| GAAAGAAGGTAGAGAGAAAG+GGG | - | tig0043495:1098-1117 | Msa1463620:intergenic | 40.0% | |
| !!! | TGCTTGTATATTTTTGGCCG+GGG | - | tig0043495:1136-1155 | Msa1463620:intergenic | 40.0% |
| CGGCCAAAAATATACAAGCA+TGG | + | tig0043495:1136-1155 | Msa1463620:intron | 40.0% | |
| !! | TGGATTTGTTGCTCTGATCA+AGG | - | tig0043495:1238-1257 | Msa1463620:intergenic | 40.0% |
| TGACTACGTAATATGACAGG+CGG | + | tig0043495:1269-1288 | Msa1463620:intron | 40.0% | |
| ATAGAACTACTCTGTCTCTC+TGG | + | tig0043495:1359-1378 | Msa1463620:intron | 40.0% | |
| ! | CATTGTTTGCGTTTTGTGAC+AGG | + | tig0043495:1507-1526 | Msa1463620:intron | 40.0% |
| TCAGCATTTGCAGTAGTTTG+AGG | + | tig0043495:1550-1569 | Msa1463620:intron | 40.0% | |
| ! | CTGCACTTGGTAACAACAAA+AGG | - | tig0043495:2307-2326 | Msa1463620:intergenic | 40.0% |
| !!! | CTTTTGTTGTTACCAAGTGC+AGG | + | tig0043495:2305-2324 | Msa1463620:intron | 40.0% |
| !! | GTTGATGATGAGTGCTGAAA+AGG | + | tig0043495:2400-2419 | Msa1463620:intron | 40.0% |
| AAACAAATAGGCACAGGATC+AGG | + | tig0043495:2437-2456 | Msa1463620:intron | 40.0% | |
| ! | ACTACTAGCTTATGCATGTG+AGG | + | tig0043495:3265-3284 | Msa1463620:intron | 40.0% |
| ! | GGTTAGGTTCCTTTGTCTTT+TGG | + | tig0043495:3309-3328 | Msa1463620:intron | 40.0% |
| !! | CTTTTTGTGATTTGCCTTGC+TGG | + | tig0043495:3394-3413 | Msa1463620:intron | 40.0% |
| ! | TGGTGATGTGAATTAGCTAC+TGG | + | tig0043495:3820-3839 | Msa1463620:intron | 40.0% |
| GATGTGAATTAGCTACTGGA+TGG | + | tig0043495:3824-3843 | Msa1463620:intron | 40.0% | |
| GGGTCTAATATGATACTGTG+CGG | + | tig0043495:4040-4059 | Msa1463620:intron | 40.0% | |
| GACCCACTCATTACATATTC+TGG | + | tig0043495:4616-4635 | Msa1463620:intron | 40.0% | |
| GAGGACCTCATTTACTGAAT+TGG | - | tig0043495:4764-4783 | Msa1463620:intergenic | 40.0% | |
| GGCAACACTAAAATCCTTCA+TGG | - | tig0043495:4901-4920 | Msa1463620:intergenic | 40.0% | |
| ! | GTTGCCTTCAAGTTACCTTA+TGG | + | tig0043495:4915-4934 | Msa1463620:intron | 40.0% |
| CAATGTCAATTTCGGCCATA+AGG | - | tig0043495:4933-4952 | Msa1463620:intergenic | 40.0% | |
| AGCCGTGACACAATTCAAAT+AGG | - | tig0043495:5188-5207 | Msa1463620:intergenic | 40.0% | |
| TTGAATTGTGTCACGGCTTT+AGG | + | tig0043495:5190-5209 | Msa1463620:intron | 40.0% | |
| AGTCATACGATGCATACATG+TGG | + | tig0043495:5289-5308 | Msa1463620:intron | 40.0% | |
| GTCATACGATGCATACATGT+GGG | + | tig0043495:5290-5309 | Msa1463620:intron | 40.0% | |
| TCATACGATGCATACATGTG+GGG | + | tig0043495:5291-5310 | Msa1463620:intron | 40.0% | |
| TACATGTGGGGTTATTTGTG+TGG | + | tig0043495:5303-5322 | Msa1463620:intron | 40.0% | |
| TCCGCGATTTATACTGGAAA+AGG | + | tig0043495:5330-5349 | Msa1463620:intron | 40.0% | |
| ! | CCCTTTTCCAGTATAAATCG+CGG | - | tig0043495:5334-5353 | Msa1463620:intergenic | 40.0% |
| CCGCGATTTATACTGGAAAA+GGG | + | tig0043495:5331-5350 | Msa1463620:intron | 40.0% | |
| GAACACGGTATCTAAATTGC+CGG | + | tig0043495:5847-5866 | Msa1463620:intron | 40.0% | |
| !!! | ACGGGCAAACTGATTTTTTG+TGG | - | tig0043495:6251-6270 | Msa1463620:intergenic | 40.0% |
| ! | TACATGGATTGTGTGCCATA+TGG | + | tig0043495:6334-6353 | Msa1463620:intron | 40.0% |
| CTGAAGTTACAAATGGCATG+AGG | - | tig0043495:6558-6577 | Msa1463620:intergenic | 40.0% | |
| CATGAGAATAAGCTTGGACA+AGG | + | tig0043495:6709-6728 | Msa1463620:intron | 40.0% | |
| !! | TGGATTTGGCTCTGTCTATA+AGG | + | tig0043495:6732-6751 | Msa1463620:intron | 40.0% |
| TTTCAGGGTTGCTTGGTTAA+TGG | + | tig0043495:6884-6903 | Msa1463620:intron | 40.0% | |
| CAGGTCAAGGAAAAGAAGAA+AGG | + | tig0043495:6942-6961 | Msa1463620:CDS | 40.0% | |
| ! | AAGAAGTCCAGGCTTTTGTT+TGG | - | tig0043495:6989-7008 | Msa1463620:intergenic | 40.0% |
| ATTGCTGATGTGAGGAATGG+TGG | + | tig0043495:226-245 | Msa1463620:CDS | 45.0% | |
| TTCCAAAGTTGGCGCCTTTA+AGG | + | tig0043495:377-396 | Msa1463620:intron | 45.0% | |
| ACATGTAGTTCACACAGGAG+AGG | - | tig0043495:528-547 | Msa1463620:intergenic | 45.0% | |
| TCTCCTGTGTGAACTACATG+TGG | + | tig0043495:527-546 | Msa1463620:intron | 45.0% | |
| CTTCCACATGTAGTTCACAC+AGG | - | tig0043495:533-552 | Msa1463620:intergenic | 45.0% | |
| GAGGATGTGACACATTGGAT+TGG | - | tig0043495:751-770 | Msa1463620:intergenic | 45.0% | |
| ATGTGACATGTAGTGGCTTG+AGG | - | tig0043495:770-789 | Msa1463620:intergenic | 45.0% | |
| AGAGAAAGGGGTTTCATGGA+GGG | - | tig0043495:1086-1105 | Msa1463620:intergenic | 45.0% | |
| GTAGAGAGAAAGGGGTTTCA+TGG | - | tig0043495:1090-1109 | Msa1463620:intergenic | 45.0% | |
| TCTTCATTTCCGATCAACCC+CGG | + | tig0043495:1116-1135 | Msa1463620:intron | 45.0% | |
| !!! | TATTTTTGGCCGGGGTTGAT+CGG | - | tig0043495:1128-1147 | Msa1463620:intergenic | 45.0% |
| ! | TGAGGAGAGAAAGATGATGG+TGG | - | tig0043495:1189-1208 | Msa1463620:intergenic | 45.0% |
| GGATGAGGAGAGAAAGATGA+TGG | - | tig0043495:1192-1211 | Msa1463620:intergenic | 45.0% | |
| !! | AGTGGGTTTTGTAGAGGATG+AGG | - | tig0043495:1207-1226 | Msa1463620:intergenic | 45.0% |
| GAGCAACAAATCCATCGTAC+CGG | + | tig0043495:1244-1263 | Msa1463620:intron | 45.0% | |
| ! | GTTTGCGTTTTGTGACAGGA+AGG | + | tig0043495:1511-1530 | Msa1463620:intron | 45.0% |
| GAGTTACTCTTGTGTAGGAC+AGG | - | tig0043495:2566-2585 | Msa1463620:intergenic | 45.0% | |
| ! | AAGTATGTCTGAGATGCCCT+TGG | + | tig0043495:3917-3936 | Msa1463620:intron | 45.0% |
| TCGGCCATAAGGTAACTTGA+AGG | - | tig0043495:4922-4941 | Msa1463620:intergenic | 45.0% | |
| !! | TTGTGTCACGGCTTTAGGAT+TGG | + | tig0043495:5195-5214 | Msa1463620:intron | 45.0% |
| ATGTGGGGTTATTTGTGTGG+AGG | + | tig0043495:5306-5325 | Msa1463620:intron | 45.0% | |
| ! | CAAGTGGACTTAAATGGGTG+TGG | - | tig0043495:5964-5983 | Msa1463620:intergenic | 45.0% |
| TCTCTTCTCCAGAGGAATCT+TGG | - | tig0043495:6609-6628 | Msa1463620:intergenic | 45.0% | |
| AGCAACATTCTCTTCTCCAG+AGG | - | tig0043495:6617-6636 | Msa1463620:intergenic | 45.0% | |
| GAGAATAAGCTTGGACAAGG+TGG | + | tig0043495:6712-6731 | Msa1463620:intron | 45.0% | |
| ! | AAGCTTGGACAAGGTGGATT+TGG | + | tig0043495:6718-6737 | Msa1463620:intron | 45.0% |
| !!! | TAATTTTCTTATTTTAATTT+TGG | + | tig0043495:3870-3889 | Msa1463620:intron | 5.0% |
| ! | GATGTGAGGAATGGTGGAAG+TGG | + | tig0043495:232-251 | Msa1463620:CDS | 50.0% |
| ! | GAATGGTGGAAGTGGATGCT+TGG | + | tig0043495:240-259 | Msa1463620:CDS | 50.0% |
| GGCATGGCATGGGGATTTAA+TGG | + | tig0043495:261-280 | Msa1463620:CDS | 50.0% | |
| !! | CACCTTAAAGGCGCCAACTT+TGG | - | tig0043495:382-401 | Msa1463620:intergenic | 50.0% |
| TGTAGTTCACACAGGAGAGG+AGG | - | tig0043495:525-544 | Msa1463620:intergenic | 50.0% | |
| GGCTTGAGGATGTGACACAT+TGG | - | tig0043495:756-775 | Msa1463620:intergenic | 50.0% | |
| GAGAAACGTGAGTGAGTGTG+AGG | - | tig0043495:1056-1075 | Msa1463620:intergenic | 50.0% | |
| AAAGGGGTTTCATGGAGGGA+GGG | - | tig0043495:1082-1101 | Msa1463620:intergenic | 50.0% | |
| GAGAGAAAGGGGTTTCATGG+AGG | - | tig0043495:1087-1106 | Msa1463620:intergenic | 50.0% | |
| ACGTAGTCATTCCGGTACGA+TGG | - | tig0043495:1258-1277 | Msa1463620:intergenic | 50.0% | |
| ! | GAGCACTCACAAAGCGTTTG+AGG | + | tig0043495:1889-1908 | Msa1463620:intron | 50.0% |
| CATCGTTCTTCACCTGCACT+TGG | - | tig0043495:2320-2339 | Msa1463620:intergenic | 50.0% | |
| ! | ACAAGTGCTGCCTTTGTTGC+AGG | + | tig0043495:3226-3245 | Msa1463620:intron | 50.0% |
| TAGCTACTGGATGGTCACAC+TGG | + | tig0043495:3833-3852 | Msa1463620:intron | 50.0% | |
| !! | GGCTTTAGGATTGGAGACTC+TGG | + | tig0043495:5204-5223 | Msa1463620:intron | 50.0% |
| GTGGAAGTGGATGCTTGGCA+TGG | + | tig0043495:245-264 | Msa1463620:CDS | 55.0% | |
| AGTGGATGCTTGGCATGGCA+TGG | + | tig0043495:250-269 | Msa1463620:CDS | 55.0% | |
| GTGGATGCTTGGCATGGCAT+GGG | + | tig0043495:251-270 | Msa1463620:CDS | 55.0% | |
| TGGATGCTTGGCATGGCATG+GGG | + | tig0043495:252-271 | Msa1463620:CDS | 55.0% | |
| AGTTCACACAGGAGAGGAGG+AGG | - | tig0043495:522-541 | Msa1463620:intergenic | 55.0% | |
| GAAAGGGGTTTCATGGAGGG+AGG | - | tig0043495:1083-1102 | Msa1463620:intergenic | 55.0% | |
| GGAGGCTCCGCGATTTATAC+TGG | + | tig0043495:5324-5343 | Msa1463620:intron | 55.0% | |
| ATTCCTACCCGTGCAACGCA+CGG | - | tig0043495:6270-6289 | Msa1463620:intergenic | 55.0% | |
| CAGTTTGCCCGTGCGTTGCA+CGG | + | tig0043495:6259-6278 | Msa1463620:intron | 60.0% | |
| AGTTTGCCCGTGCGTTGCAC+GGG | + | tig0043495:6260-6279 | Msa1463620:intron | 60.0% | |
| TTCCTACCCGTGCAACGCAC+GGG | - | tig0043495:6269-6288 | Msa1463620:intergenic | 60.0% | |
| TGCCCGTGCGTTGCACGGGT+AGG | + | tig0043495:6264-6283 | Msa1463620:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0043495 | gene | 181 | 7054 | 181 | ID=Msa1463620;Name=Msa1463620 |
| tig0043495 | mRNA | 181 | 7054 | 181 | ID=Msa1463620-mRNA-1;Parent=Msa1463620;Name=Msa1463620-mRNA-1;_AED=0.45;_eAED=0.47;_QI=0|0|0.33|1|0|0.33|3|0|120 |
| tig0043495 | exon | 181 | 346 | 181 | ID=Msa1463620-mRNA-1:exon:24132;Parent=Msa1463620-mRNA-1 |
| tig0043495 | exon | 3107 | 3135 | 3107 | ID=Msa1463620-mRNA-1:exon:24133;Parent=Msa1463620-mRNA-1 |
| tig0043495 | exon | 6890 | 7054 | 6890 | ID=Msa1463620-mRNA-1:exon:24134;Parent=Msa1463620-mRNA-1 |
| tig0043495 | CDS | 181 | 346 | 181 | ID=Msa1463620-mRNA-1:cds;Parent=Msa1463620-mRNA-1 |
| tig0043495 | CDS | 3107 | 3135 | 3107 | ID=Msa1463620-mRNA-1:cds;Parent=Msa1463620-mRNA-1 |
| tig0043495 | CDS | 6890 | 7054 | 6890 | ID=Msa1463620-mRNA-1:cds;Parent=Msa1463620-mRNA-1 |
| Gene Sequence |
| Protein sequence |
