AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1463620


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1463620 MtrunA17_Chr4g0048691 84.746 59 9 0 1 59 401 459 4.27e-33 120
Msa1463620 MtrunA17_Chr4g0048681 94.737 57 3 0 1 57 145 201 1.52e-32 119
Msa1463620 MtrunA17_Chr4g0048681 48.936 94 20 1 54 119 290 383 6.45e-17 75.1
Msa1463620 MtrunA17_Chr4g0048641 77.941 68 9 1 1 62 371 438 2.85e-31 116
Msa1463620 MtrunA17_Chr4g0048641 50.000 86 15 1 54 111 493 578 4.36e-16 72.8
Msa1463620 MtrunA17_Chr4g0048761 76.471 68 16 0 1 68 395 462 4.90e-31 115
Msa1463620 MtrunA17_Chr4g0048761 51.111 90 16 1 54 115 540 629 7.22e-17 75.1
Msa1463620 MtrunA17_Chr4g0048721 76.812 69 13 2 1 68 385 451 7.93e-30 111
Msa1463620 MtrunA17_Chr4g0048791 71.875 64 18 0 1 64 394 457 4.74e-28 107
Msa1463620 MtrunA17_Chr4g0048741 69.118 68 19 1 1 68 395 460 1.33e-27 105
Msa1463620 MtrunA17_Chr4g0048741 47.778 90 19 1 54 115 538 627 7.30e-14 66.6
Msa1463620 MtrunA17_Chr3g0084681 34.054 185 52 4 1 115 375 559 4.88e-27 103
Msa1463620 MtrunA17_Chr4g0048651 78.000 50 11 0 7 56 407 456 2.80e-24 95.9
Msa1463620 MtrunA17_Chr7g0236161 35.000 180 39 5 1 107 383 557 1.41e-22 91.3
Msa1463620 MtrunA17_Chr7g0236201 35.000 180 39 5 1 107 383 557 1.55e-22 91.3
Msa1463620 MtrunA17_Chr4g0042381 31.868 182 57 3 1 115 367 548 4.23e-20 84.3
Msa1463620 MtrunA17_Chr4g0042351 31.868 182 57 3 1 115 367 548 8.42e-20 83.6
Msa1463620 MtrunA17_Chr4g0042391 32.418 182 56 4 1 115 367 548 1.04e-19 83.2
Msa1463620 MtrunA17_Chr4g0048661 53.333 90 14 1 54 115 43 132 1.14e-18 79.7
Msa1463620 MtrunA17_Chr8g0361301 53.448 58 27 0 1 58 372 429 1.25e-17 77.4
Msa1463620 MtrunA17_Chr8g0361261 53.448 58 27 0 1 58 403 460 1.44e-17 77.0
Msa1463620 MtrunA17_Chr8g0361251 53.448 58 27 0 1 58 372 429 5.92e-17 75.5
Msa1463620 MtrunA17_Chr3g0098791 50.909 55 27 0 1 55 374 428 1.11e-16 74.7
Msa1463620 MtrunA17_Chr2g0318811 56.364 55 24 0 1 55 367 421 1.30e-16 74.3
Msa1463620 MtrunA17_Chr8g0361311 52.727 55 26 0 1 55 372 426 1.84e-16 73.9
Msa1463620 MtrunA17_Chr3g0084451 52.727 55 26 0 1 55 372 426 3.97e-16 73.2
Msa1463620 MtrunA17_Chr2g0318841 46.575 73 28 1 1 62 367 439 5.11e-16 72.8
Msa1463620 MtrunA17_Chr3g0084621 52.727 55 26 0 1 55 375 429 5.58e-16 72.4
Msa1463620 MtrunA17_Chr2g0318831 56.364 55 24 0 1 55 370 424 7.11e-16 72.4
Msa1463620 MtrunA17_Chr8g0361441 51.786 56 27 0 1 56 376 431 1.05e-15 71.6
Msa1463620 MtrunA17_Chr6g0453571 52.727 55 26 0 1 55 211 265 1.13e-15 71.6
Msa1463620 MtrunA17_Chr3g0084491 52.727 55 26 0 1 55 387 441 1.74e-15 71.2
Msa1463620 MtrunA17_Chr3g0084431 50.000 58 29 0 1 58 369 426 1.89e-15 71.2
Msa1463620 MtrunA17_Chr3g0084651 50.000 56 28 0 1 56 375 430 2.52e-15 70.5
Msa1463620 MtrunA17_Chr3g0084441 47.273 55 29 0 1 55 378 432 2.69e-15 70.5
Msa1463620 MtrunA17_Chr3g0084691 42.308 78 34 1 1 67 373 450 3.14e-15 70.5
Msa1463620 MtrunA17_Chr8g0361281 51.020 49 24 0 1 49 375 423 1.75e-14 68.2
Msa1463620 MtrunA17_Chr4g0042361 47.170 53 28 0 1 53 413 465 5.15e-14 67.0
Msa1463620 MtrunA17_Chr3g0084421 45.455 55 30 0 1 55 334 388 6.09e-14 66.6
Msa1463620 MtrunA17_Chr2g0280691 43.548 62 30 1 1 57 371 432 9.95e-14 66.2
Msa1463620 MtrunA17_Chr4g0042401 46.552 58 31 0 1 58 375 432 1.14e-13 65.9
Msa1463620 MtrunA17_Chr2g0280681 50.877 57 28 0 1 57 373 429 2.34e-13 65.1
Msa1463620 MtrunA17_Chr3g0093161 50.000 56 27 1 1 56 369 423 2.92e-13 64.7
Msa1463620 MtrunA17_Chr4g0042441 47.273 55 29 0 1 55 374 428 3.58e-13 64.7
Msa1463620 MtrunA17_Chr5g0428111 50.980 51 25 0 1 51 378 428 5.02e-13 64.3
Msa1463620 MtrunA17_Chr2g0318941 33.108 148 35 3 1 120 62 173 5.28e-13 63.2
Msa1463620 MtrunA17_Chr4g0042341 46.154 52 28 0 1 52 381 432 8.41e-13 63.5
Msa1463620 MtrunA17_Chr3g0084411 49.091 55 27 1 1 55 372 425 1.19e-12 63.2
Msa1463620 MtrunA17_Chr7g0236521 48.333 60 27 1 1 60 356 411 1.73e-12 62.4
Msa1463620 MtrunA17_Chr7g0236691 39.175 97 47 2 1 89 376 468 1.86e-12 62.4
Msa1463620 MtrunA17_Chr3g0078551 50.980 51 25 0 1 51 386 436 2.29e-12 62.4
Msa1463620 MtrunA17_Chr2g0280711 52.727 55 26 0 1 55 378 432 2.45e-12 62.0
Msa1463620 MtrunA17_Chr7g0236231 34.653 101 54 4 1 94 383 478 4.17e-12 61.6
Msa1463620 MtrunA17_Chr7g0236121 50.000 56 22 2 1 55 383 433 1.13e-11 60.5
Msa1463620 MtrunA17_Chr7g0236341 50.909 55 23 1 1 55 371 421 1.34e-11 60.1
Msa1463620 MtrunA17_Chr4g0042421 39.394 66 36 1 1 66 375 436 2.06e-11 59.7
Msa1463620 MtrunA17_Chr4g0020081 50.877 57 23 3 1 56 370 422 3.55e-11 58.9
Msa1463620 MtrunA17_Chr4g0048801 46.429 56 29 1 1 56 377 431 3.84e-11 58.9
Msa1463620 MtrunA17_Chr7g0236641 47.273 55 25 1 1 55 377 427 4.54e-11 58.5
Msa1463620 MtrunA17_Chr7g0236511 49.091 55 24 1 1 55 382 432 9.53e-11 57.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1463620 AT4G27290.1 35.484 186 49 2 1 115 374 559 7.21e-27 103
Msa1463620 AT4G27290.2 52.727 55 26 0 1 55 374 428 1.18e-16 74.7
Msa1463620 AT1G11410.3 50.000 58 27 1 1 56 348 405 1.84e-15 71.6
Msa1463620 AT1G11410.2 50.000 58 27 1 1 56 257 314 1.90e-15 71.6
Msa1463620 AT1G11410.1 50.000 58 27 1 1 56 372 429 2.20e-15 71.2
Msa1463620 AT1G11410.4 50.000 58 27 1 1 56 379 436 2.22e-15 71.2
Msa1463620 AT1G65800.2 54.000 50 23 0 1 50 376 425 3.20e-14 67.8
Msa1463620 AT1G65800.1 54.000 50 23 0 1 50 376 425 3.67e-14 67.8
Msa1463620 AT4G21380.1 45.455 55 30 0 1 55 378 432 3.86e-14 67.8
Msa1463620 AT4G21380.2 45.455 55 30 0 1 55 378 432 3.96e-14 67.8
Msa1463620 AT1G11340.2 46.552 58 29 1 1 56 437 494 8.37e-14 66.6
Msa1463620 AT1G11340.3 46.552 58 29 1 1 56 437 494 8.51e-14 66.6
Msa1463620 AT1G11340.1 46.552 58 29 1 1 56 369 426 1.15e-13 66.2
Msa1463620 AT1G65790.3 45.455 55 30 0 1 55 372 426 1.28e-13 66.2
Msa1463620 AT1G65790.2 45.455 55 30 0 1 55 372 426 1.28e-13 66.2
Msa1463620 AT1G65790.1 45.455 55 30 0 1 55 372 426 1.28e-13 66.2
Msa1463620 AT4G27300.1 49.123 57 27 1 1 55 378 434 3.95e-13 64.7
Msa1463620 AT1G11330.3 50.909 55 23 1 1 55 389 439 2.67e-11 59.7
Msa1463620 AT1G11330.2 50.909 55 23 1 1 55 389 439 2.67e-11 59.7
Msa1463620 AT1G11330.1 50.909 55 23 1 1 55 389 439 3.11e-11 59.3
Msa1463620 AT1G11300.2 33.708 89 52 2 1 89 379 460 4.07e-11 58.9

Find 18 sgRNAs with CRISPR-Local

Find 322 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTCAGGGTTGCTTGGTTAA+TGG 0.229091 tig0043495:+6884 Msa1463620:intron
GGCATGGCATGGGGATTTAA+TGG 0.267684 tig0043495:+261 Msa1463620:CDS
CCTCACATCAGCAATTGAAT+AGG 0.434525 tig0043495:-218 Msa1463620:intergenic
GTGGATGCTTGGCATGGCAT+GGG 0.445328 tig0043495:+251 Msa1463620:CDS
AGAAATATTTCAGGGTTGCT+TGG 0.446423 tig0043495:+6877 Msa1463620:intron
AGTGGATGCTTGGCATGGCA+TGG 0.471935 tig0043495:+250 Msa1463620:CDS
CGACGCGTAGAAATAAATCT+TGG 0.496886 tig0043495:-309 Msa1463620:intergenic
CGCGTCGATAAAATTGAACT+AGG 0.511168 tig0043495:+325 Msa1463620:CDS
TACTGAATATAAAGAAGTCC+AGG 0.524944 tig0043495:-6997 Msa1463620:intergenic
ATACTTACCAAACAAAAGCC+TGG 0.536720 tig0043495:+6979 Msa1463620:CDS
GATGTGAGGAATGGTGGAAG+TGG 0.540161 tig0043495:+232 Msa1463620:CDS
CAGGTCAAGGAAAAGAAGAA+AGG 0.545367 tig0043495:+6942 Msa1463620:CDS
GAATGGTGGAAGTGGATGCT+TGG 0.585091 tig0043495:+240 Msa1463620:CDS
ATTGCTGATGTGAGGAATGG+TGG 0.606147 tig0043495:+226 Msa1463620:CDS
TGGATGCTTGGCATGGCATG+GGG 0.616708 tig0043495:+252 Msa1463620:CDS
TCAATTGCTGATGTGAGGAA+TGG 0.650268 tig0043495:+223 Msa1463620:CDS
CCTATTCAATTGCTGATGTG+AGG 0.663437 tig0043495:+218 Msa1463620:CDS
GTGGAAGTGGATGCTTGGCA+TGG 0.667666 tig0043495:+245 Msa1463620:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTCAAATTTATAATGATTA+AGG - tig0043495:1662-1681 Msa1463620:intergenic 10.0%
!!! AATAAAAAAACTTCAAATTT+TGG + tig0043495:1922-1941 Msa1463620:intron 10.0%
!!! ATAAAAAAACTTCAAATTTT+GGG + tig0043495:1923-1942 Msa1463620:intron 10.0%
!! AAAATTGATACAAAATATAA+TGG - tig0043495:2953-2972 Msa1463620:intergenic 10.0%
!!! TTTATATATATTTTTGTTAC+AGG + tig0043495:3085-3104 Msa1463620:intron 10.0%
!!! TTATTTGAAGTTTAATTAAA+TGG + tig0043495:3173-3192 Msa1463620:intron 10.0%
!! CAATTTATCAATAAAATTTA+AGG + tig0043495:3593-3612 Msa1463620:intron 10.0%
!! AGTAATTAATATAAAGAACA+TGG - tig0043495:627-646 Msa1463620:intergenic 15.0%
!!! TCAATTTTTTATTTTTGATC+TGG + tig0043495:1408-1427 Msa1463620:intron 15.0%
!! CAAACAATGATATTAAAATT+TGG - tig0043495:1496-1515 Msa1463620:intergenic 15.0%
!!! AAATACAAATTTTGTTGTTT+TGG + tig0043495:1768-1787 Msa1463620:intron 15.0%
!!! TAAAAAAACTTCAAATTTTG+GGG + tig0043495:1924-1943 Msa1463620:intron 15.0%
!!! TTTAAAAGTTACAATTTTGT+TGG + tig0043495:2028-2047 Msa1463620:intron 15.0%
!! AATTTATGCAAAAAAAGTAA+GGG - tig0043495:2203-2222 Msa1463620:intergenic 15.0%
!!! AAACATTGATTGATTTTAAT+GGG + tig0043495:2248-2267 Msa1463620:intron 15.0%
!! TGAAAGTTAAATTCAAAAAT+TGG + tig0043495:2349-2368 Msa1463620:intron 15.0%
!! GTAAAAAAAAATAGACAAAA+CGG - tig0043495:3495-3514 Msa1463620:intergenic 15.0%
!!! ATTTTCATCTCTATTAATAA+TGG + tig0043495:3530-3549 Msa1463620:intron 15.0%
!!! ATAAAATTTAAGGTTGTTTA+AGG + tig0043495:3603-3622 Msa1463620:intron 15.0%
!!! TTCTTTTCATTTCTAATTTA+TGG - tig0043495:3741-3760 Msa1463620:intergenic 15.0%
!! AAATAAAATTATTCAACATG+TGG - tig0043495:4004-4023 Msa1463620:intergenic 15.0%
!!! ATGTTTTTTTTACTTTTGAT+TGG + tig0043495:4357-4376 Msa1463620:intron 15.0%
!! CTAACTATTAATGATAATAA+GGG - tig0043495:4586-4605 Msa1463620:intergenic 15.0%
!! ACTAACTATTAATGATAATA+AGG - tig0043495:4587-4606 Msa1463620:intergenic 15.0%
!! TTTATATATAGATGTTGATA+TGG - tig0043495:5526-5545 Msa1463620:intergenic 15.0%
!! TTTACAACTTATTAAAATGA+TGG - tig0043495:5893-5912 Msa1463620:intergenic 15.0%
!!! TTTATAAGGATTATGTTTTT+TGG + tig0043495:6002-6021 Msa1463620:intron 15.0%
!! AAGTAGTCATTAATTATTAT+TGG + tig0043495:6074-6093 Msa1463620:intron 15.0%
!!! ATTTTAGTTATTAGACAAAT+TGG - tig0043495:6181-6200 Msa1463620:intergenic 15.0%
!!! AATATATGTTTGTATTTTAG+CGG + tig0043495:6198-6217 Msa1463620:intron 15.0%
!! ATTTAATAGAGAAATATTTC+AGG + tig0043495:6868-6887 Msa1463620:intron 15.0%
!! TTTAATAGAGAAATATTTCA+GGG + tig0043495:6869-6888 Msa1463620:intron 15.0%
!! ATTCAAAAACTTAATGATCA+AGG + tig0043495:286-305 Msa1463620:CDS 20.0%
!!! ATTTCTTTTTCTGTAGTATT+TGG - tig0043495:439-458 Msa1463620:intergenic 20.0%
!! AAATACTACAGAAAAAGAAA+TGG + tig0043495:438-457 Msa1463620:intron 20.0%
!! AGTAATTAATAGAAAGAACA+TGG - tig0043495:598-617 Msa1463620:intergenic 20.0%
!! ATCTTAATAATATACAAGCA+TGG + tig0043495:699-718 Msa1463620:intron 20.0%
!! TATTGTGTAAATGCTTAAAA+TGG - tig0043495:820-839 Msa1463620:intergenic 20.0%
!!! TTTGAATTTTGAATTGAAGA+GGG - tig0043495:874-893 Msa1463620:intergenic 20.0%
!!! ATTTGAATTTTGAATTGAAG+AGG - tig0043495:875-894 Msa1463620:intergenic 20.0%
!!! AAAAAACGAAAAAATGGATT+TGG - tig0043495:1309-1328 Msa1463620:intergenic 20.0%
!! GAATCAAAAAAACGAAAAAA+TGG - tig0043495:1315-1334 Msa1463620:intergenic 20.0%
!! GAATTTATGCAAAAAAAGTA+AGG - tig0043495:2204-2223 Msa1463620:intergenic 20.0%
!!! ACTTTTTTTGCATAAATTCA+TGG + tig0043495:2205-2224 Msa1463620:intron 20.0%
!!! GAAACATTGATTGATTTTAA+TGG + tig0043495:2247-2266 Msa1463620:intron 20.0%
!! AATTCTAAACACAAACAAAT+AGG + tig0043495:2425-2444 Msa1463620:intron 20.0%
!!! AGAAGTAATTTGCTAATTTT+TGG + tig0043495:2633-2652 Msa1463620:intron 20.0%
!! ATTGAAACAAAATGAATGAA+AGG - tig0043495:2918-2937 Msa1463620:intergenic 20.0%
!!! TTTCAGTGAAAATAAACTTT+TGG - tig0043495:2996-3015 Msa1463620:intergenic 20.0%
!!! AATTAAATGGTTTTATGATG+TGG + tig0043495:3186-3205 Msa1463620:intron 20.0%
!! TTCAGTAATATACAAATTTC+AGG + tig0043495:3288-3307 Msa1463620:intron 20.0%
!!! TAATATACAAATTTCAGGTT+AGG + tig0043495:3293-3312 Msa1463620:intron 20.0%
!!! TATATCAAAGATTTTGTAGA+AGG + tig0043495:3439-3458 Msa1463620:intron 20.0%
!! CACTATTAATTAATAACCAA+GGG - tig0043495:3936-3955 Msa1463620:intergenic 20.0%
!! TCACTATTAATTAATAACCA+AGG - tig0043495:3937-3956 Msa1463620:intergenic 20.0%
!!! AGACTTTACTATTTTTCATT+TGG + tig0043495:4081-4100 Msa1463620:intron 20.0%
!!! GACTTTACTATTTTTCATTT+GGG + tig0043495:4082-4101 Msa1463620:intron 20.0%
!! TTATTGTTAAACTGAAAAAG+AGG - tig0043495:4145-4164 Msa1463620:intergenic 20.0%
!! AAATGAATATAATCATAGTC+CGG - tig0043495:4242-4261 Msa1463620:intergenic 20.0%
!!! TTTAAAAAGTATTGACATTC+TGG + tig0043495:4465-4484 Msa1463620:intron 20.0%
!!! ACATTTTACATTTCTAAGAA+CGG + tig0043495:4560-4579 Msa1463620:intron 20.0%
!!! TGTTTTTAGTTTAAGTTGTT+GGG + tig0043495:4713-4732 Msa1463620:intron 20.0%
!! TAAAAGAATCAGACAATAAA+AGG - tig0043495:4956-4975 Msa1463620:intergenic 20.0%
!! TATTCAAGATATAAACCATA+AGG + tig0043495:5020-5039 Msa1463620:intron 20.0%
!! TATAAAACAAAGTTACCTTA+TGG - tig0043495:5038-5057 Msa1463620:intergenic 20.0%
!! TTATACTTAAATGTCCAAAA+AGG - tig0043495:5149-5168 Msa1463620:intergenic 20.0%
!! TATGAACTATTAATATCCAA+AGG - tig0043495:5602-5621 Msa1463620:intergenic 20.0%
!!! TTATTATAATCGAATTTTGC+AGG + tig0043495:5638-5657 Msa1463620:intron 20.0%
!! GAAAAATACAAAAATTACAG+AGG - tig0043495:5740-5759 Msa1463620:intergenic 20.0%
!!! ATCTCAGAGTTTAATTTATA+AGG + tig0043495:5988-6007 Msa1463620:intron 20.0%
!! TCATTAATTATTATTGGTCA+GGG + tig0043495:6080-6099 Msa1463620:intron 20.0%
!!! TTTTTATCTGAAGTTACAAA+TGG - tig0043495:6565-6584 Msa1463620:intergenic 20.0%
!! ATGATGCAAAAATAATGAAA+TGG + tig0043495:6844-6863 Msa1463620:intron 20.0%
!! TGATGCAAAAATAATGAAAT+GGG + tig0043495:6845-6864 Msa1463620:intron 20.0%
! TTTGGAAAGAAAAACACAAT+AGG - tig0043495:364-383 Msa1463620:intergenic 25.0%
! AAGTTCAAAATACACCTTAA+AGG - tig0043495:394-413 Msa1463620:intergenic 25.0%
!!! GGGTATGTGATTTATTTTTT+AGG + tig0043495:564-583 Msa1463620:intron 25.0%
! TATAGAAAGTGATGTTTGTT+GGG - tig0043495:944-963 Msa1463620:intergenic 25.0%
! ATATAGAAAGTGATGTTTGT+TGG - tig0043495:945-964 Msa1463620:intergenic 25.0%
! TCTTAACATAACATTAGATC+AGG - tig0043495:1337-1356 Msa1463620:intergenic 25.0%
!!! AATGCAACTTTATTTGTTGT+AGG + tig0043495:1680-1699 Msa1463620:intron 25.0%
!!! ATTTTGTTGTTTTGGTCATT+TGG + tig0043495:1776-1795 Msa1463620:intron 25.0%
!! ATTTCTGAAAAAGCAATGAA+AGG - tig0043495:2152-2171 Msa1463620:intergenic 25.0%
!!! TGCTTTTTCAGAAATTCAAA+AGG + tig0043495:2157-2176 Msa1463620:intron 25.0%
!!! GCTTTTTCAGAAATTCAAAA+GGG + tig0043495:2158-2177 Msa1463620:intron 25.0%
! AAATTCATGGTATCTATAAG+AGG + tig0043495:2218-2237 Msa1463620:intron 25.0%
!!! GGACATTGATTGATTTTAAT+GGG + tig0043495:2269-2288 Msa1463620:intron 25.0%
!! AAAACTTAAGTCTCTTTTTG+AGG + tig0043495:2481-2500 Msa1463620:intron 25.0%
!! AAACTTAAGTCTCTTTTTGA+GGG + tig0043495:2482-2501 Msa1463620:intron 25.0%
! AGACTAGATAATTCTTTCTT+TGG + tig0043495:2719-2738 Msa1463620:intron 25.0%
! GATAATTCTTTCTTTGGTAA+AGG + tig0043495:2725-2744 Msa1463620:intron 25.0%
! TCACTGAAATTGTTTAATGT+AGG + tig0043495:3007-3026 Msa1463620:intron 25.0%
!! TTTTCATTGTAGTTGATCAA+AGG + tig0043495:3350-3369 Msa1463620:intron 25.0%
! AAATCTTTGATATAGCATCA+TGG - tig0043495:3433-3452 Msa1463620:intergenic 25.0%
! TGCGAAGAAAATTTAGAAAA+TGG - tig0043495:3465-3484 Msa1463620:intergenic 25.0%
!! GAAAAGAATTTTATCTTGAG+AGG + tig0043495:3753-3772 Msa1463620:intron 25.0%
! TATTTGTCTCTCTTTACTAT+AGG + tig0043495:4019-4038 Msa1463620:intron 25.0%
! ATTTGTCTCTCTTTACTATA+GGG + tig0043495:4020-4039 Msa1463620:intron 25.0%
!! CTAAATGAGATAATTTTTGC+CGG + tig0043495:4220-4239 Msa1463620:intron 25.0%
!!! CTGTTTTTAGTTTAAGTTGT+TGG + tig0043495:4712-4731 Msa1463620:intron 25.0%
!!! GTTTTTAGTTTAAGTTGTTG+GGG + tig0043495:4714-4733 Msa1463620:intron 25.0%
! ATTGGATACCATAACTAAAT+AGG - tig0043495:4746-4765 Msa1463620:intergenic 25.0%
! ATAAAAGGCAATGTCAATTT+CGG - tig0043495:4941-4960 Msa1463620:intergenic 25.0%
! ATACCATGACATAATAACAT+TGG + tig0043495:5068-5087 Msa1463620:intron 25.0%
! ATAACATTGGAGATAATTAG+TGG + tig0043495:5081-5100 Msa1463620:intron 25.0%
! TAACATTGGAGATAATTAGT+GGG + tig0043495:5082-5101 Msa1463620:intron 25.0%
! AATTAGTGGGAATAAGATTA+AGG + tig0043495:5095-5114 Msa1463620:intron 25.0%
! ATTAGTGGGAATAAGATTAA+GGG + tig0043495:5096-5115 Msa1463620:intron 25.0%
!! TATCAGTGTACACATTTTAT+TGG - tig0043495:5436-5455 Msa1463620:intergenic 25.0%
! ACTATTAATATCCAAAGGAA+AGG - tig0043495:5597-5616 Msa1463620:intergenic 25.0%
! TATTTCCTTTCTTACTTTGT+CGG + tig0043495:5683-5702 Msa1463620:intron 25.0%
! ATACAAAAATTACAGAGGAA+AGG - tig0043495:5735-5754 Msa1463620:intergenic 25.0%
!!! GAGTTTTATAACACAAAATC+CGG - tig0043495:5869-5888 Msa1463620:intergenic 25.0%
! GTTATCATCTATCATTCATT+AGG + tig0043495:5936-5955 Msa1463620:intron 25.0%
! GTCATTAATTATTATTGGTC+AGG + tig0043495:6079-6098 Msa1463620:intron 25.0%
! CAAAACATTGATATACCATA+TGG - tig0043495:6352-6371 Msa1463620:intergenic 25.0%
!!! TTGAAGGGTATATTTCTTTT+TGG - tig0043495:6510-6529 Msa1463620:intergenic 25.0%
!! ATCAACTAACACATTTTGAA+GGG - tig0043495:6525-6544 Msa1463620:intergenic 25.0%
!! AATCAACTAACACATTTTGA+AGG - tig0043495:6526-6545 Msa1463620:intergenic 25.0%
!!! ATCGTTTTAAAGCTGAAAAA+GGG - tig0043495:6664-6683 Msa1463620:intergenic 25.0%
!!! TATCGTTTTAAAGCTGAAAA+AGG - tig0043495:6665-6684 Msa1463620:intergenic 25.0%
! CTATTGAAATGAACATAAAG+AGG - tig0043495:6810-6829 Msa1463620:intergenic 25.0%
! AAAAGATTGTCGAAAAATTC+AGG + tig0043495:6923-6942 Msa1463620:CDS 25.0%
GAAAGAAAAACACAATAGGA+GGG - tig0043495:360-379 Msa1463620:intergenic 30.0%
! TGTGTTTTTCTTTCCAAAGT+TGG + tig0043495:366-385 Msa1463620:intron 30.0%
TGGAGTTCTTGATAAAAAAG+AGG + tig0043495:458-477 Msa1463620:intron 30.0%
GTTCTTGATAAAAAAGAGGT+TGG + tig0043495:462-481 Msa1463620:intron 30.0%
ACTACATGTGGAAGAAAAAA+AGG + tig0043495:539-558 Msa1463620:intron 30.0%
CTACATGTGGAAGAAAAAAA+GGG + tig0043495:540-559 Msa1463620:intron 30.0%
AAAAGGAAAGAAGTTTAGAG+TGG - tig0043495:982-1001 Msa1463620:intergenic 30.0%
GATAGAATGTGAGGAAAAAA+AGG - tig0043495:999-1018 Msa1463620:intergenic 30.0%
! GTTCCATGCTTGTATATTTT+TGG - tig0043495:1142-1161 Msa1463620:intergenic 30.0%
TGATCAAGGAAAAAATGAGT+GGG - tig0043495:1224-1243 Msa1463620:intergenic 30.0%
!! TGATCTGGAATTTTCATCAT+TGG + tig0043495:1423-1442 Msa1463620:intron 30.0%
!! TTGGTCATTTGGTCTTAAAT+TGG + tig0043495:1787-1806 Msa1463620:intron 30.0%
CATCTCATAATTAAGTGAGA+AGG - tig0043495:2086-2105 Msa1463620:intergenic 30.0%
CACACAAACCAAGAAATTAA+AGG - tig0043495:2124-2143 Msa1463620:intergenic 30.0%
ATGGTATCTATAAGAGGTAA+TGG + tig0043495:2224-2243 Msa1463620:intron 30.0%
TGGTATCTATAAGAGGTAAT+GGG + tig0043495:2225-2244 Msa1463620:intron 30.0%
!! GGGACATTGATTGATTTTAA+TGG + tig0043495:2268-2287 Msa1463620:intron 30.0%
ATTGGAGAGAAGTTTGATAA+TGG + tig0043495:2367-2386 Msa1463620:intron 30.0%
CTTCACAAAAGAAGCTAATA+GGG - tig0043495:2764-2783 Msa1463620:intergenic 30.0%
ACTTCACAAAAGAAGCTAAT+AGG - tig0043495:2765-2784 Msa1463620:intergenic 30.0%
! AGGTTTCGCTTTAAGTTATT+TGG + tig0043495:3027-3046 Msa1463620:intron 30.0%
! TCAATTCTTTTCAGTTGTGA+TGG + tig0043495:3109-3128 Msa1463620:CDS 30.0%
!!! TAAATGGTTTTATGATGTGG+AGG + tig0043495:3189-3208 Msa1463620:intron 30.0%
ATAAATTGATCCTGCAACAA+AGG - tig0043495:3239-3258 Msa1463620:intergenic 30.0%
AGAAATGAACCAAAAGACAA+AGG - tig0043495:3321-3340 Msa1463620:intergenic 30.0%
!!! ATCAAAGGTGTGCATTTTTT+TGG + tig0043495:3365-3384 Msa1463620:intron 30.0%
! TTTCTAAATTTTCTTCGCAC+TGG + tig0043495:3466-3485 Msa1463620:intron 30.0%
TTCCAGAATATGTAATGAGT+GGG - tig0043495:4621-4640 Msa1463620:intergenic 30.0%
! CATTACATATTCTGGAAGTA+TGG + tig0043495:4624-4643 Msa1463620:intron 30.0%
GAATCATATTAAGAGAGAAG+AGG - tig0043495:4783-4802 Msa1463620:intergenic 30.0%
CTCTTAATATGATTCTTCGA+AGG + tig0043495:4788-4807 Msa1463620:intron 30.0%
TTCATGGACAATTTCTTTAG+TGG - tig0043495:4885-4904 Msa1463620:intergenic 30.0%
ACTAAAGAAATTGTCCATGA+AGG + tig0043495:4884-4903 Msa1463620:intron 30.0%
TCTCCAATGTTATTATGTCA+TGG - tig0043495:5074-5093 Msa1463620:intergenic 30.0%
TTAGTGGGAATAAGATTAAG+GGG + tig0043495:5097-5116 Msa1463620:intron 30.0%
TACCTATTTGAATTGTGTCA+CGG + tig0043495:5183-5202 Msa1463620:intron 30.0%
!! CATTTGATTTGAGGATAAAG+AGG - tig0043495:5371-5390 Msa1463620:intergenic 30.0%
!! AATGTCACTTGCAAATTTTG+AGG + tig0043495:5387-5406 Msa1463620:intron 30.0%
TCTAGTTAAAGCGTATACAT+AGG - tig0043495:5573-5592 Msa1463620:intergenic 30.0%
ATAAACCGACAAAGTAAGAA+AGG - tig0043495:5691-5710 Msa1463620:intergenic 30.0%
!!! CTTTGTCGGTTTATATTTTG+AGG + tig0043495:5697-5716 Msa1463620:intron 30.0%
ATATGAACTTTCCTAATGCT+CGG + tig0043495:5790-5809 Msa1463620:intron 30.0%
! TATTGCAAGTGGACTTAAAT+GGG - tig0043495:5969-5988 Msa1463620:intergenic 30.0%
! ATATTGCAAGTGGACTTAAA+TGG - tig0043495:5970-5989 Msa1463620:intergenic 30.0%
TTGTCTTGCAAATGTAATGA+TGG - tig0043495:6455-6474 Msa1463620:intergenic 30.0%
TACTGAATATAAAGAAGTCC+AGG - tig0043495:7000-7019 Msa1463620:intergenic 30.0%
GGAAAGAAAAACACAATAGG+AGG - tig0043495:361-380 Msa1463620:intergenic 35.0%
! CTTTTTCTGTAGTATTTGGC+TGG - tig0043495:435-454 Msa1463620:intergenic 35.0%
ATGTGGAAGAAAAAAAGGGA+GGG + tig0043495:544-563 Msa1463620:intron 35.0%
! AATGATGATGTGACATGTAG+TGG - tig0043495:777-796 Msa1463620:intergenic 35.0%
GGATAAGAGAAAATGTAGGA+GGG - tig0043495:923-942 Msa1463620:intergenic 35.0%
GTTGGGATAAGAGAAAATGT+AGG - tig0043495:927-946 Msa1463620:intergenic 35.0%
TTAGAGTGGATGAGAGATAA+AGG - tig0043495:968-987 Msa1463620:intergenic 35.0%
AGAAAGAAGGTAGAGAGAAA+GGG - tig0043495:1099-1118 Msa1463620:intergenic 35.0%
AAGAAAGAAGGTAGAGAGAA+AGG - tig0043495:1100-1119 Msa1463620:intergenic 35.0%
TGATCGGAAATGAAGAAAGA+AGG - tig0043495:1112-1131 Msa1463620:intergenic 35.0%
!!! ATGCTTGTATATTTTTGGCC+GGG - tig0043495:1137-1156 Msa1463620:intergenic 35.0%
!!! CATGCTTGTATATTTTTGGC+CGG - tig0043495:1138-1157 Msa1463620:intergenic 35.0%
!! AAAATGAGTGGGTTTTGTAG+AGG - tig0043495:1213-1232 Msa1463620:intergenic 35.0%
CTGATCAAGGAAAAAATGAG+TGG - tig0043495:1225-1244 Msa1463620:intergenic 35.0%
GTCATATTACGTAGTCATTC+CGG - tig0043495:1266-1285 Msa1463620:intergenic 35.0%
GAATGACTACGTAATATGAC+AGG + tig0043495:1266-1285 Msa1463620:intron 35.0%
TTGAAGACAAAGAGCTCATT+AGG - tig0043495:1981-2000 Msa1463620:intergenic 35.0%
! CTCGACTTCCTTTAATTTCT+TGG + tig0043495:2113-2132 Msa1463620:intron 35.0%
CAGAAATTCAAAAGGGATGA+AGG + tig0043495:2165-2184 Msa1463620:intron 35.0%
AAACACAAACAAATAGGCAC+AGG + tig0043495:2431-2450 Msa1463620:intron 35.0%
TTGTTGAGTTACTCTTGTGT+AGG - tig0043495:2571-2590 Msa1463620:intergenic 35.0%
!! TCTTTTCAGTTGTGATGGAA+AGG + tig0043495:3114-3133 Msa1463620:CDS 35.0%
GATTAAGCATAAAACCAGCA+AGG - tig0043495:3411-3430 Msa1463620:intergenic 35.0%
!! TAGAAGTACTGCTTGATGTT+TGG + tig0043495:3800-3819 Msa1463620:intron 35.0%
!! GCTTTTCTTTTTTGCAAGAG+AGG + tig0043495:4104-4123 Msa1463620:intron 35.0%
GTCAGTAGTATGTCAACATA+TGG + tig0043495:4328-4347 Msa1463620:intron 35.0%
CTTCCAGAATATGTAATGAG+TGG - tig0043495:4622-4641 Msa1463620:intergenic 35.0%
GGTCAGTTCCTATTTAGTTA+TGG + tig0043495:4735-4754 Msa1463620:intron 35.0%
GGTATCCAATTCAGTAAATG+AGG + tig0043495:4756-4775 Msa1463620:intron 35.0%
!! AAAGGTTGAGAGAGTGTTAT+GGG - tig0043495:5131-5150 Msa1463620:intergenic 35.0%
!! AAAAGGTTGAGAGAGTGTTA+TGG - tig0043495:5132-5151 Msa1463620:intergenic 35.0%
! TAACACTCTCTCAACCTTTT+TGG + tig0043495:5132-5151 Msa1463620:intron 35.0%
TGTGTATCTAGTAGTTGCAA+TGG - tig0043495:5242-5261 Msa1463620:intergenic 35.0%
ATCGTATGACTTGAGAAGAA+AGG - tig0043495:5280-5299 Msa1463620:intergenic 35.0%
!! TGCAAGTGACATTTGATTTG+AGG - tig0043495:5380-5399 Msa1463620:intergenic 35.0%
GAAGCTAAAACGATATTCAC+AGG - tig0043495:5504-5523 Msa1463620:intergenic 35.0%
GTTCATGAGAAACGAACATT+TGG - tig0043495:5551-5570 Msa1463620:intergenic 35.0%
TTTAACTAGAGCCTTTCCTT+TGG + tig0043495:5583-5602 Msa1463620:intron 35.0%
TTGAAAAGAAACCGAGCATT+AGG - tig0043495:5804-5823 Msa1463620:intergenic 35.0%
GTGAAAGATGCAAATGAACA+CGG + tig0043495:5832-5851 Msa1463620:intron 35.0%
!! AAACTCTGAGATATTGCAAG+TGG - tig0043495:5980-5999 Msa1463620:intergenic 35.0%
GTTTGTTTAGTGTCAGTTTG+TGG + tig0043495:6300-6319 Msa1463620:intron 35.0%
TGTGGTGTTCAACTATTACA+TGG + tig0043495:6318-6337 Msa1463620:intron 35.0%
! TAGCACTTGTTGAAGAAACT+AGG - tig0043495:6387-6406 Msa1463620:intergenic 35.0%
CAATTAAACCAAGATTCCTC+TGG + tig0043495:6598-6617 Msa1463620:intron 35.0%
AAGCTGAAAAAGGGTAGATT+TGG - tig0043495:6655-6674 Msa1463620:intergenic 35.0%
TGTGATCATGAGAATAAGCT+TGG + tig0043495:6703-6722 Msa1463620:intron 35.0%
AGAAATATTTCAGGGTTGCT+TGG + tig0043495:6877-6896 Msa1463620:intron 35.0%
TTGTCGAAAAATTCAGGTCA+AGG + tig0043495:6929-6948 Msa1463620:CDS 35.0%
ATACTTACCAAACAAAAGCC+TGG + tig0043495:6979-6998 Msa1463620:CDS 35.0%
CCTCACATCAGCAATTGAAT+AGG - tig0043495:221-240 None:intergenic 40.0%
CCTATTCAATTGCTGATGTG+AGG + tig0043495:218-237 Msa1463620:CDS 40.0%
TCAATTGCTGATGTGAGGAA+TGG + tig0043495:223-242 Msa1463620:CDS 40.0%
CGACGCGTAGAAATAAATCT+TGG - tig0043495:312-331 Msa1463620:intergenic 40.0%
! CGCGTCGATAAAATTGAACT+AGG + tig0043495:325-344 Msa1463620:CDS 40.0%
CATGTGGAAGAAAAAAAGGG+AGG + tig0043495:543-562 Msa1463620:intron 40.0%
GGGATAAGAGAAAATGTAGG+AGG - tig0043495:924-943 Msa1463620:intergenic 40.0%
TGTGTGTGAGATAGAATGTG+AGG - tig0043495:1008-1027 Msa1463620:intergenic 40.0%
GAAAGAAGGTAGAGAGAAAG+GGG - tig0043495:1098-1117 Msa1463620:intergenic 40.0%
!!! TGCTTGTATATTTTTGGCCG+GGG - tig0043495:1136-1155 Msa1463620:intergenic 40.0%
CGGCCAAAAATATACAAGCA+TGG + tig0043495:1136-1155 Msa1463620:intron 40.0%
!! TGGATTTGTTGCTCTGATCA+AGG - tig0043495:1238-1257 Msa1463620:intergenic 40.0%
TGACTACGTAATATGACAGG+CGG + tig0043495:1269-1288 Msa1463620:intron 40.0%
ATAGAACTACTCTGTCTCTC+TGG + tig0043495:1359-1378 Msa1463620:intron 40.0%
! CATTGTTTGCGTTTTGTGAC+AGG + tig0043495:1507-1526 Msa1463620:intron 40.0%
TCAGCATTTGCAGTAGTTTG+AGG + tig0043495:1550-1569 Msa1463620:intron 40.0%
! CTGCACTTGGTAACAACAAA+AGG - tig0043495:2307-2326 Msa1463620:intergenic 40.0%
!!! CTTTTGTTGTTACCAAGTGC+AGG + tig0043495:2305-2324 Msa1463620:intron 40.0%
!! GTTGATGATGAGTGCTGAAA+AGG + tig0043495:2400-2419 Msa1463620:intron 40.0%
AAACAAATAGGCACAGGATC+AGG + tig0043495:2437-2456 Msa1463620:intron 40.0%
! ACTACTAGCTTATGCATGTG+AGG + tig0043495:3265-3284 Msa1463620:intron 40.0%
! GGTTAGGTTCCTTTGTCTTT+TGG + tig0043495:3309-3328 Msa1463620:intron 40.0%
!! CTTTTTGTGATTTGCCTTGC+TGG + tig0043495:3394-3413 Msa1463620:intron 40.0%
! TGGTGATGTGAATTAGCTAC+TGG + tig0043495:3820-3839 Msa1463620:intron 40.0%
GATGTGAATTAGCTACTGGA+TGG + tig0043495:3824-3843 Msa1463620:intron 40.0%
GGGTCTAATATGATACTGTG+CGG + tig0043495:4040-4059 Msa1463620:intron 40.0%
GACCCACTCATTACATATTC+TGG + tig0043495:4616-4635 Msa1463620:intron 40.0%
GAGGACCTCATTTACTGAAT+TGG - tig0043495:4764-4783 Msa1463620:intergenic 40.0%
GGCAACACTAAAATCCTTCA+TGG - tig0043495:4901-4920 Msa1463620:intergenic 40.0%
! GTTGCCTTCAAGTTACCTTA+TGG + tig0043495:4915-4934 Msa1463620:intron 40.0%
CAATGTCAATTTCGGCCATA+AGG - tig0043495:4933-4952 Msa1463620:intergenic 40.0%
AGCCGTGACACAATTCAAAT+AGG - tig0043495:5188-5207 Msa1463620:intergenic 40.0%
TTGAATTGTGTCACGGCTTT+AGG + tig0043495:5190-5209 Msa1463620:intron 40.0%
AGTCATACGATGCATACATG+TGG + tig0043495:5289-5308 Msa1463620:intron 40.0%
GTCATACGATGCATACATGT+GGG + tig0043495:5290-5309 Msa1463620:intron 40.0%
TCATACGATGCATACATGTG+GGG + tig0043495:5291-5310 Msa1463620:intron 40.0%
TACATGTGGGGTTATTTGTG+TGG + tig0043495:5303-5322 Msa1463620:intron 40.0%
TCCGCGATTTATACTGGAAA+AGG + tig0043495:5330-5349 Msa1463620:intron 40.0%
! CCCTTTTCCAGTATAAATCG+CGG - tig0043495:5334-5353 Msa1463620:intergenic 40.0%
CCGCGATTTATACTGGAAAA+GGG + tig0043495:5331-5350 Msa1463620:intron 40.0%
GAACACGGTATCTAAATTGC+CGG + tig0043495:5847-5866 Msa1463620:intron 40.0%
!!! ACGGGCAAACTGATTTTTTG+TGG - tig0043495:6251-6270 Msa1463620:intergenic 40.0%
! TACATGGATTGTGTGCCATA+TGG + tig0043495:6334-6353 Msa1463620:intron 40.0%
CTGAAGTTACAAATGGCATG+AGG - tig0043495:6558-6577 Msa1463620:intergenic 40.0%
CATGAGAATAAGCTTGGACA+AGG + tig0043495:6709-6728 Msa1463620:intron 40.0%
!! TGGATTTGGCTCTGTCTATA+AGG + tig0043495:6732-6751 Msa1463620:intron 40.0%
TTTCAGGGTTGCTTGGTTAA+TGG + tig0043495:6884-6903 Msa1463620:intron 40.0%
CAGGTCAAGGAAAAGAAGAA+AGG + tig0043495:6942-6961 Msa1463620:CDS 40.0%
! AAGAAGTCCAGGCTTTTGTT+TGG - tig0043495:6989-7008 Msa1463620:intergenic 40.0%
ATTGCTGATGTGAGGAATGG+TGG + tig0043495:226-245 Msa1463620:CDS 45.0%
TTCCAAAGTTGGCGCCTTTA+AGG + tig0043495:377-396 Msa1463620:intron 45.0%
ACATGTAGTTCACACAGGAG+AGG - tig0043495:528-547 Msa1463620:intergenic 45.0%
TCTCCTGTGTGAACTACATG+TGG + tig0043495:527-546 Msa1463620:intron 45.0%
CTTCCACATGTAGTTCACAC+AGG - tig0043495:533-552 Msa1463620:intergenic 45.0%
GAGGATGTGACACATTGGAT+TGG - tig0043495:751-770 Msa1463620:intergenic 45.0%
ATGTGACATGTAGTGGCTTG+AGG - tig0043495:770-789 Msa1463620:intergenic 45.0%
AGAGAAAGGGGTTTCATGGA+GGG - tig0043495:1086-1105 Msa1463620:intergenic 45.0%
GTAGAGAGAAAGGGGTTTCA+TGG - tig0043495:1090-1109 Msa1463620:intergenic 45.0%
TCTTCATTTCCGATCAACCC+CGG + tig0043495:1116-1135 Msa1463620:intron 45.0%
!!! TATTTTTGGCCGGGGTTGAT+CGG - tig0043495:1128-1147 Msa1463620:intergenic 45.0%
! TGAGGAGAGAAAGATGATGG+TGG - tig0043495:1189-1208 Msa1463620:intergenic 45.0%
GGATGAGGAGAGAAAGATGA+TGG - tig0043495:1192-1211 Msa1463620:intergenic 45.0%
!! AGTGGGTTTTGTAGAGGATG+AGG - tig0043495:1207-1226 Msa1463620:intergenic 45.0%
GAGCAACAAATCCATCGTAC+CGG + tig0043495:1244-1263 Msa1463620:intron 45.0%
! GTTTGCGTTTTGTGACAGGA+AGG + tig0043495:1511-1530 Msa1463620:intron 45.0%
GAGTTACTCTTGTGTAGGAC+AGG - tig0043495:2566-2585 Msa1463620:intergenic 45.0%
! AAGTATGTCTGAGATGCCCT+TGG + tig0043495:3917-3936 Msa1463620:intron 45.0%
TCGGCCATAAGGTAACTTGA+AGG - tig0043495:4922-4941 Msa1463620:intergenic 45.0%
!! TTGTGTCACGGCTTTAGGAT+TGG + tig0043495:5195-5214 Msa1463620:intron 45.0%
ATGTGGGGTTATTTGTGTGG+AGG + tig0043495:5306-5325 Msa1463620:intron 45.0%
! CAAGTGGACTTAAATGGGTG+TGG - tig0043495:5964-5983 Msa1463620:intergenic 45.0%
TCTCTTCTCCAGAGGAATCT+TGG - tig0043495:6609-6628 Msa1463620:intergenic 45.0%
AGCAACATTCTCTTCTCCAG+AGG - tig0043495:6617-6636 Msa1463620:intergenic 45.0%
GAGAATAAGCTTGGACAAGG+TGG + tig0043495:6712-6731 Msa1463620:intron 45.0%
! AAGCTTGGACAAGGTGGATT+TGG + tig0043495:6718-6737 Msa1463620:intron 45.0%
!!! TAATTTTCTTATTTTAATTT+TGG + tig0043495:3870-3889 Msa1463620:intron 5.0%
! GATGTGAGGAATGGTGGAAG+TGG + tig0043495:232-251 Msa1463620:CDS 50.0%
! GAATGGTGGAAGTGGATGCT+TGG + tig0043495:240-259 Msa1463620:CDS 50.0%
GGCATGGCATGGGGATTTAA+TGG + tig0043495:261-280 Msa1463620:CDS 50.0%
!! CACCTTAAAGGCGCCAACTT+TGG - tig0043495:382-401 Msa1463620:intergenic 50.0%
TGTAGTTCACACAGGAGAGG+AGG - tig0043495:525-544 Msa1463620:intergenic 50.0%
GGCTTGAGGATGTGACACAT+TGG - tig0043495:756-775 Msa1463620:intergenic 50.0%
GAGAAACGTGAGTGAGTGTG+AGG - tig0043495:1056-1075 Msa1463620:intergenic 50.0%
AAAGGGGTTTCATGGAGGGA+GGG - tig0043495:1082-1101 Msa1463620:intergenic 50.0%
GAGAGAAAGGGGTTTCATGG+AGG - tig0043495:1087-1106 Msa1463620:intergenic 50.0%
ACGTAGTCATTCCGGTACGA+TGG - tig0043495:1258-1277 Msa1463620:intergenic 50.0%
! GAGCACTCACAAAGCGTTTG+AGG + tig0043495:1889-1908 Msa1463620:intron 50.0%
CATCGTTCTTCACCTGCACT+TGG - tig0043495:2320-2339 Msa1463620:intergenic 50.0%
! ACAAGTGCTGCCTTTGTTGC+AGG + tig0043495:3226-3245 Msa1463620:intron 50.0%
TAGCTACTGGATGGTCACAC+TGG + tig0043495:3833-3852 Msa1463620:intron 50.0%
!! GGCTTTAGGATTGGAGACTC+TGG + tig0043495:5204-5223 Msa1463620:intron 50.0%
GTGGAAGTGGATGCTTGGCA+TGG + tig0043495:245-264 Msa1463620:CDS 55.0%
AGTGGATGCTTGGCATGGCA+TGG + tig0043495:250-269 Msa1463620:CDS 55.0%
GTGGATGCTTGGCATGGCAT+GGG + tig0043495:251-270 Msa1463620:CDS 55.0%
TGGATGCTTGGCATGGCATG+GGG + tig0043495:252-271 Msa1463620:CDS 55.0%
AGTTCACACAGGAGAGGAGG+AGG - tig0043495:522-541 Msa1463620:intergenic 55.0%
GAAAGGGGTTTCATGGAGGG+AGG - tig0043495:1083-1102 Msa1463620:intergenic 55.0%
GGAGGCTCCGCGATTTATAC+TGG + tig0043495:5324-5343 Msa1463620:intron 55.0%
ATTCCTACCCGTGCAACGCA+CGG - tig0043495:6270-6289 Msa1463620:intergenic 55.0%
CAGTTTGCCCGTGCGTTGCA+CGG + tig0043495:6259-6278 Msa1463620:intron 60.0%
AGTTTGCCCGTGCGTTGCAC+GGG + tig0043495:6260-6279 Msa1463620:intron 60.0%
TTCCTACCCGTGCAACGCAC+GGG - tig0043495:6269-6288 Msa1463620:intergenic 60.0%
TGCCCGTGCGTTGCACGGGT+AGG + tig0043495:6264-6283 Msa1463620:intron 70.0%
Chromosome Type Strat End Strand Name
tig0043495 gene 181 7054 181 ID=Msa1463620;Name=Msa1463620
tig0043495 mRNA 181 7054 181 ID=Msa1463620-mRNA-1;Parent=Msa1463620;Name=Msa1463620-mRNA-1;_AED=0.45;_eAED=0.47;_QI=0|0|0.33|1|0|0.33|3|0|120
tig0043495 exon 181 346 181 ID=Msa1463620-mRNA-1:exon:24132;Parent=Msa1463620-mRNA-1
tig0043495 exon 3107 3135 3107 ID=Msa1463620-mRNA-1:exon:24133;Parent=Msa1463620-mRNA-1
tig0043495 exon 6890 7054 6890 ID=Msa1463620-mRNA-1:exon:24134;Parent=Msa1463620-mRNA-1
tig0043495 CDS 181 346 181 ID=Msa1463620-mRNA-1:cds;Parent=Msa1463620-mRNA-1
tig0043495 CDS 3107 3135 3107 ID=Msa1463620-mRNA-1:cds;Parent=Msa1463620-mRNA-1
tig0043495 CDS 6890 7054 6890 ID=Msa1463620-mRNA-1:cds;Parent=Msa1463620-mRNA-1
Gene Sequence

>Msa1463620

TGTGAGAAAGAATGCTTGCAAAACTGTTCTTGTACTGCCTATTCAATTGCTGATGTGAGGAATGGTGGAAGTGGATGCTTGGCATGGCATGGGGATTTAATGGACATTCAAAAACTTAATGATCAAGGCCAAGATTTATTTCTACGCGTCGATAAAATTGAACTAGGTTCAATTCTTTTCAGTTGTGATGGAAAGGGTTGCTTGGTTAATGGACAAGAGATAGCAGTGAAAAGATTGTCGAAAAATTCAGGTCAAGGAAAAGAAGAAAGGATGCTAGTTTATGAATACTTACCAAACAAAAGCCTGGACTTCTTTATATTCAGTAAGCATCTCTCAAACTCACTTATTGTCTCTCTAGCT

Protein sequence

>Msa1463620

CEKECLQNCSCTAYSIADVRNGGSGCLAWHGDLMDIQKLNDQGQDLFLRVDKIELGSILFSCDGKGCLVNGQEIAVKRLSKNSGQGKEERMLVYEYLPNKSLDFFIFSKHLSNSLIVSLA