AlfalfaGEDB | Msa1463620

M. sativa cultivar zhongmu-4 / Msa1463620

KEGG: -
GO: GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564
PFAM: PF08276.14

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1463620	XP_029153014.1	44.162	197	28	3	1	115	377	573	2.55e-37	144

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1463620	sp\|O81832\|Y4729_ARATH	35.484	186	49	2	1	115	374	559	7.09e-26	103

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1463620	A0A445DRQ2	43.750	192	31	3	1	116	1253	1443	1.80e-36	141

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa1287560	Msa1463620	0.813143	2.971728e-51	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1463620	MtrunA17_Chr4g0048691	84.746	59	9	0	1	59	401	459	4.27e-33	120
Msa1463620	MtrunA17_Chr4g0048681	94.737	57	3	0	1	57	145	201	1.52e-32	119
Msa1463620	MtrunA17_Chr4g0048681	48.936	94	20	1	54	119	290	383	6.45e-17	75.1
Msa1463620	MtrunA17_Chr4g0048641	77.941	68	9	1	1	62	371	438	2.85e-31	116
Msa1463620	MtrunA17_Chr4g0048641	50.000	86	15	1	54	111	493	578	4.36e-16	72.8
Msa1463620	MtrunA17_Chr4g0048761	76.471	68	16	0	1	68	395	462	4.90e-31	115
Msa1463620	MtrunA17_Chr4g0048761	51.111	90	16	1	54	115	540	629	7.22e-17	75.1
Msa1463620	MtrunA17_Chr4g0048721	76.812	69	13	2	1	68	385	451	7.93e-30	111
Msa1463620	MtrunA17_Chr4g0048791	71.875	64	18	0	1	64	394	457	4.74e-28	107
Msa1463620	MtrunA17_Chr4g0048741	69.118	68	19	1	1	68	395	460	1.33e-27	105

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1463620	AT4G27290.1	35.484	186	49	2	1	115	374	559	7.21e-27	103
Msa1463620	AT4G27290.2	52.727	55	26	0	1	55	374	428	1.18e-16	74.7
Msa1463620	AT1G11410.3	50.000	58	27	1	1	56	348	405	1.84e-15	71.6
Msa1463620	AT1G11410.2	50.000	58	27	1	1	56	257	314	1.90e-15	71.6
Msa1463620	AT1G11410.1	50.000	58	27	1	1	56	372	429	2.20e-15	71.2
Msa1463620	AT1G11410.4	50.000	58	27	1	1	56	379	436	2.22e-15	71.2
Msa1463620	AT1G65800.2	54.000	50	23	0	1	50	376	425	3.20e-14	67.8
Msa1463620	AT1G65800.1	54.000	50	23	0	1	50	376	425	3.67e-14	67.8
Msa1463620	AT4G21380.1	45.455	55	30	0	1	55	378	432	3.86e-14	67.8
Msa1463620	AT4G21380.2	45.455	55	30	0	1	55	378	432	3.96e-14	67.8

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Find 18 sgRNAs with CRISPR-Local

Find 322 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AGAAATATTTCAGGGTTGCT+TGG	0.446423	tig0043495:+6877	Msa1463620:intron
AGTGGATGCTTGGCATGGCA+TGG	0.471935	tig0043495:+250	Msa1463620:CDS
ATACTTACCAAACAAAAGCC+TGG	0.536720	tig0043495:+6979	Msa1463620:CDS
ATTGCTGATGTGAGGAATGG+TGG	0.606147	tig0043495:+226	Msa1463620:CDS
CAGGTCAAGGAAAAGAAGAA+AGG	0.545367	tig0043495:+6942	Msa1463620:CDS
CCTATTCAATTGCTGATGTG+AGG	0.663437	tig0043495:+218	Msa1463620:CDS
CCTCACATCAGCAATTGAAT+AGG	0.434525	tig0043495:-218	Msa1463620:intergenic
CGACGCGTAGAAATAAATCT+TGG	0.496886	tig0043495:-309	Msa1463620:intergenic
CGCGTCGATAAAATTGAACT+AGG	0.511168	tig0043495:+325	Msa1463620:CDS
GAATGGTGGAAGTGGATGCT+TGG	0.585091	tig0043495:+240	Msa1463620:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GAAAGAAAAACACAATAGGA+GGG	-	tig0043495:360-379	Msa1463620:intergenic	30.0%
TGGAGTTCTTGATAAAAAAG+AGG	+	tig0043495:458-477	Msa1463620:intron	30.0%
GTTCTTGATAAAAAAGAGGT+TGG	+	tig0043495:462-481	Msa1463620:intron	30.0%
ACTACATGTGGAAGAAAAAA+AGG	+	tig0043495:539-558	Msa1463620:intron	30.0%
CTACATGTGGAAGAAAAAAA+GGG	+	tig0043495:540-559	Msa1463620:intron	30.0%
AAAAGGAAAGAAGTTTAGAG+TGG	-	tig0043495:982-1001	Msa1463620:intergenic	30.0%
GATAGAATGTGAGGAAAAAA+AGG	-	tig0043495:999-1018	Msa1463620:intergenic	30.0%
TGATCAAGGAAAAAATGAGT+GGG	-	tig0043495:1224-1243	Msa1463620:intergenic	30.0%
CATCTCATAATTAAGTGAGA+AGG	-	tig0043495:2086-2105	Msa1463620:intergenic	30.0%
CACACAAACCAAGAAATTAA+AGG	-	tig0043495:2124-2143	Msa1463620:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
tig0043495	gene	181	7054	181	ID=Msa1463620;Name=Msa1463620
tig0043495	mRNA	181	7054	181	ID=Msa1463620-mRNA-1;Parent=Msa1463620;Name=Msa1463620-mRNA-1;_AED=0.45;_eAED=0.47;_QI=0\|0\|0.33\|1\|0\|0.33\|3\|0\|120
tig0043495	exon	181	346	181	ID=Msa1463620-mRNA-1:exon:24132;Parent=Msa1463620-mRNA-1
tig0043495	exon	3107	3135	3107	ID=Msa1463620-mRNA-1:exon:24133;Parent=Msa1463620-mRNA-1
tig0043495	exon	6890	7054	6890	ID=Msa1463620-mRNA-1:exon:24134;Parent=Msa1463620-mRNA-1
tig0043495	CDS	181	346	181	ID=Msa1463620-mRNA-1:cds;Parent=Msa1463620-mRNA-1
tig0043495	CDS	3107	3135	3107	ID=Msa1463620-mRNA-1:cds;Parent=Msa1463620-mRNA-1
tig0043495	CDS	6890	7054	6890	ID=Msa1463620-mRNA-1:cds;Parent=Msa1463620-mRNA-1

Gene Sequence	>Msa1463620 TGTGAGAAAGAATGCTTGCAAAACTGTTCTTGTACTGCCTATTCAATTGCTGATGTGAGGAATGGTGGAAGTGGATGCTTGGCATGGCATGGGGATTTAATGGACATTCAAAAACTTAATGATCAAGGCCAAGATTTATTTCTACGCGTCGATAAAATTGAACTAGGTTCAATTCTTTTCAGTTGTGATGGAAAGGGTTGCTTGGTTAATGGACAAGAGATAGCAGTGAAAAGATTGTCGAAAAATTCAGGTCAAGGAAAAGAAGAAAGGATGCTAGTTTATGAATACTTACCAAACAAAAGCCTGGACTTCTTTATATTCAGTAAGCATCTCTCAAACTCACTTATTGTCTCTCTAGCT
Protein sequence	>Msa1463620 CEKECLQNCSCTAYSIADVRNGGSGCLAWHGDLMDIQKLNDQGQDLFLRVDKIELGSILFSCDGKGCLVNGQEIAVKRLSKNSGQGKEERMLVYEYLPNKSLDFFIFSKHLSNSLIVSLA