Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1463680 | XP_013451587.1 | 97.931 | 145 | 3 | 0 | 1 | 145 | 1 | 145 | 4.01e-102 | 306 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1463680 | A0A072UIG3 | 97.931 | 145 | 3 | 0 | 1 | 145 | 1 | 145 | 1.92e-102 | 306 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1131900 | Msa1463680 | 0.800336 | 1.512124e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1463680 | MtrunA17_Chr6g0461701 | 97.931 | 145 | 3 | 0 | 1 | 145 | 1 | 145 | 3.69e-106 | 306 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1463680 | AT5G17570.2 | 72.917 | 144 | 39 | 0 | 2 | 145 | 1 | 144 | 8.27e-79 | 237 |
| Msa1463680 | AT5G17570.1 | 72.917 | 144 | 39 | 0 | 2 | 145 | 1 | 144 | 1.12e-78 | 237 |
| Msa1463680 | AT3G03500.3 | 64.583 | 144 | 51 | 0 | 2 | 145 | 1 | 144 | 5.43e-69 | 208 |
| Msa1463680 | AT3G03500.1 | 64.583 | 144 | 51 | 0 | 2 | 145 | 1 | 144 | 4.00e-68 | 208 |
| Msa1463680 | AT3G03500.2 | 62.821 | 78 | 29 | 0 | 68 | 145 | 33 | 110 | 2.46e-31 | 113 |
Find 29 sgRNAs with CRISPR-Local
Find 161 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATAAGGATAAATGGGAATT+TGG | 0.150937 | tig0043583:-5092 | Msa1463680:five_prime_UTR |
| GGTGTCTTGTTTATGATTCT+TGG | 0.213076 | tig0043583:+4946 | Msa1463680:intergenic |
| CTTCCTTTGGTCTCCATCCC+TGG | 0.297899 | tig0043583:-4807 | Msa1463680:intron |
| CCTTCTGTTCTTCCTTCCTT+TGG | 0.311848 | tig0043583:-4820 | Msa1463680:CDS |
| CTTCAACGTCTTCAACCAAT+TGG | 0.340661 | tig0043583:+2965 | Msa1463680:intergenic |
| GTGTCTTGTTTATGATTCTT+GGG | 0.345527 | tig0043583:+4947 | Msa1463680:intergenic |
| AAAATCAATCTTCTTTCCTT+GGG | 0.372466 | tig0043583:+2641 | Msa1463680:intergenic |
| GTCTTACACTTTGCTGTTAA+CGG | 0.380768 | tig0043583:-4892 | Msa1463680:CDS |
| GTACATTGTGTTCGTGCTTA+CGG | 0.389384 | tig0043583:-1965 | Msa1463680:CDS |
| TTCAACGTCTTCAACCAATT+GGG | 0.398461 | tig0043583:+2966 | Msa1463680:intergenic |
| TTCAACAATTCATAAACTTA+CGG | 0.415064 | tig0043583:+5007 | Msa1463680:intergenic |
| ACGGAGTTTCTGAACAAGAT+TGG | 0.436828 | tig0043583:-4873 | Msa1463680:CDS |
| TTGCAGAGAGGAGCCCCAAT+TGG | 0.482756 | tig0043583:-2980 | Msa1463680:CDS |
| CCAAAGGAAGGAAGAACAGA+AGG | 0.519584 | tig0043583:+4820 | Msa1463680:intergenic |
| CGAACACAATGTACAGATGC+TGG | 0.542316 | tig0043583:+1974 | Msa1463680:intergenic |
| TCAACGTCTTCAACCAATTG+GGG | 0.551486 | tig0043583:+2967 | Msa1463680:intergenic |
| CAATTGGTTGAAGACGTTGA+AGG | 0.554473 | tig0043583:-2964 | Msa1463680:CDS |
| TACCTCTCCAACTGCAGCAG+AGG | 0.560264 | tig0043583:+2923 | Msa1463680:intergenic |
| CTATGCAGGTTGAAGTATTG+AGG | 0.565024 | tig0043583:-2030 | Msa1463680:intron |
| TTCCAGATTGGATTGGACAA+AGG | 0.577268 | tig0043583:-2666 | Msa1463680:intron |
| ACCCTCTGCTGCAGTTGGAG+AGG | 0.580522 | tig0043583:-2925 | Msa1463680:intron |
| TCTACACCCTCTGCTGCAGT+TGG | 0.582522 | tig0043583:-2930 | Msa1463680:CDS |
| ACCTCTCCAACTGCAGCAGA+GGG | 0.588835 | tig0043583:+2924 | Msa1463680:intergenic |
| CAAAGGAAGGAAGAACAGAA+GGG | 0.605180 | tig0043583:+4821 | Msa1463680:intergenic |
| GGATTGGACAAAGGATCCCA+AGG | 0.626617 | tig0043583:-2657 | Msa1463680:CDS |
| AAACCAGGGATGGAGACCAA+AGG | 0.626952 | tig0043583:+4804 | Msa1463680:intergenic |
| ATTAAAACAGCACAAGACAC+TGG | 0.635495 | tig0043583:-4916 | Msa1463680:CDS |
| TACTTGAGAATAATGATGCG+AGG | 0.642053 | tig0043583:-1866 | Msa1463680:CDS |
| CAGGGATGGAGACCAAAGGA+AGG | 0.643047 | tig0043583:+4808 | Msa1463670:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTAAATTAACAAAAAAAG+AGG | + | tig0043583:2246-2265 | Msa1463680:intergenic | 10.0% |
| !! | TGTATATATAAATTATACTT+GGG | + | tig0043583:2931-2950 | Msa1463680:intergenic | 10.0% |
| !! | ATGTATATATAAATTATACT+TGG | + | tig0043583:2932-2951 | Msa1463680:intergenic | 10.0% |
| !! | TGATAAATTATAAATGAAAT+TGG | - | tig0043583:4206-4225 | Msa1463680:intron | 10.0% |
| !!! | TTTTTTTACATAAGGATAAA+TGG | - | tig0043583:1895-1914 | Msa1463680:CDS | 15.0% |
| !!! | TTTTTTACATAAGGATAAAT+GGG | - | tig0043583:1896-1915 | Msa1463680:CDS | 15.0% |
| !!! | ATTTCATGTTCTATATTTTT+TGG | - | tig0043583:2263-2282 | Msa1463680:intron | 15.0% |
| !!! | TTTCATGTTCTATATTTTTT+GGG | - | tig0043583:2264-2283 | Msa1463680:intron | 15.0% |
| !! | TGTAACATAAAAAAAATATG+GGG | + | tig0043583:2573-2592 | Msa1463680:intergenic | 15.0% |
| !! | GTGTAACATAAAAAAAATAT+GGG | + | tig0043583:2574-2593 | Msa1463680:intergenic | 15.0% |
| !! | TGTGTAACATAAAAAAAATA+TGG | + | tig0043583:2575-2594 | Msa1463680:intergenic | 15.0% |
| !!! | TCTAAACAATTTTTTTTTAC+AGG | + | tig0043583:2721-2740 | Msa1463680:intergenic | 15.0% |
| !! | TTCAACAATTCATAAACTTA+CGG | + | tig0043583:1991-2010 | Msa1463680:intergenic | 20.0% |
| !!! | AGTATAATTTGTTGTATCAT+TGG | - | tig0043583:3104-3123 | Msa1463680:intron | 20.0% |
| !!! | CAATTCATTGTTATTATAGT+TGG | + | tig0043583:3190-3209 | Msa1463680:intergenic | 20.0% |
| !!! | GTTTGCAATTTTAATACATT+CGG | + | tig0043583:3362-3381 | Msa1463680:intergenic | 20.0% |
| !! | ATTAACTAAAGAGATATTTG+AGG | - | tig0043583:3462-3481 | Msa1463680:intron | 20.0% |
| !! | ACATTAAGATACTATATCAA+TGG | - | tig0043583:3679-3698 | Msa1463680:intron | 20.0% |
| !! | ATAACATAATCAATATGTGA+AGG | - | tig0043583:4678-4697 | Msa1463680:intron | 20.0% |
| !! | ATTATAACACTCTTCAATAT+CGG | + | tig0043583:4772-4791 | Msa1463680:intergenic | 20.0% |
| !! | AAGAATGTTATCTGAATTAT+TGG | - | tig0043583:4916-4935 | Msa1463680:CDS | 20.0% |
| ! | TTTCAAAATAGTCATTTCGT+TGG | - | tig0043583:2320-2339 | Msa1463680:intron | 25.0% |
| ! | AACGAAACATTTCAATATGA+GGG | + | tig0043583:2356-2375 | Msa1463680:intergenic | 25.0% |
| ! | TAACGAAACATTTCAATATG+AGG | + | tig0043583:2357-2376 | Msa1463680:intergenic | 25.0% |
| !! | ACTGATTGTAGAAGTATAAA+GGG | - | tig0043583:2640-2659 | Msa1463680:CDS | 25.0% |
| ! | CAAAGAATCTTCAAATTACA+GGG | + | tig0043583:2750-2769 | Msa1463680:intergenic | 25.0% |
| ! | AAATTCGCTCAAATTACATA+GGG | - | tig0043583:2828-2847 | Msa1463680:intron | 25.0% |
| ! | ACAAATTATACTTCTACGAT+CGG | + | tig0043583:3096-3115 | Msa1463680:intergenic | 25.0% |
| ! | ACTTATTTCATATGTTGGAT+TGG | + | tig0043583:3165-3184 | Msa1463680:intergenic | 25.0% |
| ! | TGGATACTTATTTCATATGT+TGG | + | tig0043583:3170-3189 | Msa1463680:intergenic | 25.0% |
| ! | AGAACTTAAGTTCAATTCTT+AGG | - | tig0043583:3539-3558 | Msa1463680:intron | 25.0% |
| !!! | GCTAACTAGTATTTTAAGAT+CGG | + | tig0043583:3717-3736 | Msa1463680:intergenic | 25.0% |
| ! | AAATTCGACAAATTTCTGAA+TGG | + | tig0043583:3782-3801 | Msa1463680:intergenic | 25.0% |
| ! | TTGATATTGTAAACACTGAA+AGG | - | tig0043583:3878-3897 | Msa1463680:intron | 25.0% |
| ! | TGATATTGTAAACACTGAAA+GGG | - | tig0043583:3879-3898 | Msa1463680:intron | 25.0% |
| ! | AAAATCAATCTTCTTTCCTT+GGG | + | tig0043583:4357-4376 | Msa1463680:intergenic | 25.0% |
| ! | AAAAATCAATCTTCTTTCCT+TGG | + | tig0043583:4358-4377 | Msa1463680:intergenic | 25.0% |
| ! | ATGTTTATAGAGAAACCTAA+TGG | - | tig0043583:4609-4628 | Msa1463680:intron | 25.0% |
| ! | TGTTATCTGTTATAACAGAT+TGG | + | tig0043583:4664-4683 | Msa1463680:intergenic | 25.0% |
| ! | ATGTTATCTGAATTATTGGT+TGG | - | tig0043583:4920-4939 | Msa1463680:CDS | 25.0% |
| CATAAGGATAAATGGGAATT+TGG | - | tig0043583:1903-1922 | Msa1463680:CDS | 30.0% | |
| !! | GTGTCTTGTTTATGATTCTT+GGG | + | tig0043583:2051-2070 | Msa1463680:intergenic | 30.0% |
| ATGAGTGAAAAAACAAACCA+GGG | + | tig0043583:2208-2227 | Msa1463680:intergenic | 30.0% | |
| AATGAGTGAAAAAACAAACC+AGG | + | tig0043583:2209-2228 | Msa1463680:intergenic | 30.0% | |
| !!! | TTTTTTGGGATAGTGTAACA+AGG | - | tig0043583:2278-2297 | Msa1463680:intron | 30.0% |
| !!! | TCAGCGACTATTTTGAAATT+TGG | - | tig0043583:2496-2515 | Msa1463680:intron | 30.0% |
| TGACTACTCATCACATATTT+AGG | - | tig0043583:2530-2549 | Msa1463680:intron | 30.0% | |
| GACTACTCATCACATATTTA+GGG | - | tig0043583:2531-2550 | Msa1463680:intron | 30.0% | |
| CTTTATACTTCTACAATCAG+TGG | + | tig0043583:2641-2660 | Msa1463680:intergenic | 30.0% | |
| ! | CACTGATTGTAGAAGTATAA+AGG | - | tig0043583:2639-2658 | Msa1463680:CDS | 30.0% |
| TGTTTACCCTGTAATATTAG+CGG | - | tig0043583:2671-2690 | Msa1463680:intron | 30.0% | |
| CCAAAGAATCTTCAAATTAC+AGG | + | tig0043583:2751-2770 | Msa1463680:intergenic | 30.0% | |
| CCTGTAATTTGAAGATTCTT+TGG | - | tig0043583:2748-2767 | Msa1463680:intron | 30.0% | |
| ! | ATTTGAAGATTCTTTGGTTC+TGG | - | tig0043583:2754-2773 | Msa1463680:intron | 30.0% |
| TGTACTGTCAAAATTCATGA+AGG | + | tig0043583:2781-2800 | Msa1463680:intergenic | 30.0% | |
| ! | GACAGTACATAGTTTGTATA+TGG | - | tig0043583:2792-2811 | Msa1463680:intron | 30.0% |
| ! | AGTACATAGTTTGTATATGG+CGG | - | tig0043583:2795-2814 | Msa1463680:intron | 30.0% |
| GAAATTCGCTCAAATTACAT+AGG | - | tig0043583:2827-2846 | Msa1463680:intron | 30.0% | |
| TAGAAACCGCTAATATTACA+TGG | - | tig0043583:2889-2908 | Msa1463680:intron | 30.0% | |
| AGAAACCGCTAATATTACAT+GGG | - | tig0043583:2890-2909 | Msa1463680:intron | 30.0% | |
| TTTACCCCATGTAATATTAG+CGG | + | tig0043583:2898-2917 | Msa1463680:intergenic | 30.0% | |
| ! | ACACAATGTGTTTGGATTTT+CGG | + | tig0043583:3142-3161 | Msa1463680:intergenic | 30.0% |
| ! | CTCACAATTTGCAAGTTTTA+TGG | + | tig0043583:3216-3235 | Msa1463680:intergenic | 30.0% |
| !! | ATACTTGTTTTCCCATTACT+GGG | + | tig0043583:3302-3321 | Msa1463680:intergenic | 30.0% |
| !! | CTCTTTGGTTTGTAGTTATA+GGG | - | tig0043583:3398-3417 | Msa1463680:intron | 30.0% |
| GCTTAACACAGTTCAATAAA+TGG | + | tig0043583:3739-3758 | Msa1463680:intergenic | 30.0% | |
| !! | GTAAACACATGTGTTGATTT+CGG | - | tig0043583:3909-3928 | Msa1463680:intron | 30.0% |
| !! | ATAGCTGGTCTATAATTTTC+AGG | - | tig0043583:3988-4007 | Msa1463680:intron | 30.0% |
| AGAATATGTCATAGTTCATG+TGG | - | tig0043583:4137-4156 | Msa1463680:intron | 30.0% | |
| ! | GTTTTTCTTTTCTTCCAGAT+TGG | - | tig0043583:4317-4336 | Msa1463680:intron | 30.0% |
| !!! | GACGATTTTGAAACTCTAAT+CGG | - | tig0043583:4436-4455 | Msa1463680:intron | 30.0% |
| AAACTAATGTGAGTTAGCTA+AGG | - | tig0043583:4582-4601 | Msa1463680:intron | 30.0% | |
| ATTGCAGTTAAGTATCCATT+AGG | + | tig0043583:4627-4646 | Msa1463680:intergenic | 30.0% | |
| ATACTTAACTGCAATTCAGT+TGG | - | tig0043583:4632-4651 | Msa1463680:intron | 30.0% | |
| ! | TATGTGAAGGTTTTTCTGAA+AGG | - | tig0043583:4691-4710 | Msa1463680:intron | 30.0% |
| TGATGTATGTACTACTTTAG+AGG | + | tig0043583:4845-4864 | Msa1463680:intergenic | 30.0% | |
| CATGTATCAATGACAAAAGA+CGG | - | tig0043583:4880-4899 | Msa1463680:CDS | 30.0% | |
| ATAACATTCTTCAGCAAGAA+AGG | + | tig0043583:4907-4926 | Msa1463680:intergenic | 30.0% | |
| ! | TACGGCTTCAACTTTTGTTA+TGG | + | tig0043583:1973-1992 | Msa1463680:intergenic | 35.0% |
| !! | GGTGTCTTGTTTATGATTCT+TGG | + | tig0043583:2052-2071 | Msa1463680:intergenic | 35.0% |
| !!! | TGTGCTGTTTTAATCAGTTG+TGG | + | tig0043583:2073-2092 | Msa1463680:intergenic | 35.0% |
| ATTAAAACAGCACAAGACAC+TGG | - | tig0043583:2079-2098 | Msa1463680:intron | 35.0% | |
| !! | GTCTTACACTTTGCTGTTAA+CGG | - | tig0043583:2103-2122 | Msa1463680:intron | 35.0% |
| ! | GTTTTCTGTTAAGCAGTTGT+CGG | - | tig0043583:2144-2163 | Msa1463680:intron | 35.0% |
| ATAATTATTAATCCGTGCCC+AGG | - | tig0043583:2611-2630 | Msa1463680:intron | 35.0% | |
| TAATTATTAATCCGTGCCCA+GGG | - | tig0043583:2612-2631 | Msa1463680:intron | 35.0% | |
| CAGAAACCGCTAATATTACA+GGG | + | tig0043583:2680-2699 | Msa1463680:intergenic | 35.0% | |
| ACAGAAACCGCTAATATTAC+AGG | + | tig0043583:2681-2700 | Msa1463680:intergenic | 35.0% | |
| GAATCTTCAAATTACAGGGT+TGG | + | tig0043583:2746-2765 | Msa1463680:intergenic | 35.0% | |
| GAAACCGCTAATATTACATG+GGG | - | tig0043583:2891-2910 | Msa1463680:intron | 35.0% | |
| TGAGTATTAATCTGTGCTCA+AGG | - | tig0043583:3064-3083 | Msa1463680:intron | 35.0% | |
| AATTATACTTCTACGATCGG+TGG | + | tig0043583:3093-3112 | Msa1463680:intergenic | 35.0% | |
| !! | GATACTTGTTTTCCCATTAC+TGG | + | tig0043583:3303-3322 | Msa1463680:intergenic | 35.0% |
| CCTATAACTACAAACCAAAG+AGG | + | tig0043583:3400-3419 | Msa1463680:intergenic | 35.0% | |
| !! | CCTCTTTGGTTTGTAGTTAT+AGG | - | tig0043583:3397-3416 | Msa1463680:intron | 35.0% |
| CTTCTGAACAATTTGTGCTT+TGG | + | tig0043583:3521-3540 | Msa1463680:intergenic | 35.0% | |
| ! | GCACTGACAAATTAGATTGA+CGG | + | tig0043583:3957-3976 | Msa1463680:intergenic | 35.0% |
| TTCAACGTCTTCAACCAATT+GGG | + | tig0043583:4032-4051 | Msa1463680:intergenic | 35.0% | |
| ! | TCTTTTCTTCCAGATTGGAT+TGG | - | tig0043583:4322-4341 | Msa1463680:intron | 35.0% |
| !! | GAAGATTGATTTTTCTCAGC+AGG | - | tig0043583:4364-4383 | Msa1463680:intron | 35.0% |
| CATTGTAAAGCCAAAGAATG+AGG | + | tig0043583:4405-4424 | Msa1463680:intergenic | 35.0% | |
| !! | TGAAGGTTTTTCTGAAAGGA+TGG | - | tig0043583:4695-4714 | Msa1463680:intron | 35.0% |
| TACTTGAGAATAATGATGCG+AGG | - | tig0043583:5129-5148 | Msa1463680:five_prime_UTR | 35.0% | |
| ACGGAGTTTCTGAACAAGAT+TGG | - | tig0043583:2122-2141 | Msa1463680:intron | 40.0% | |
| CAAAGGAAGGAAGAACAGAA+GGG | + | tig0043583:2177-2196 | Msa1463680:intergenic | 40.0% | |
| GTGAAAAAACAAACCAGGGA+TGG | + | tig0043583:2204-2223 | Msa1463680:intergenic | 40.0% | |
| ! | ACATAGTTTGTATATGGCGG+AGG | - | tig0043583:2798-2817 | Msa1463680:intron | 40.0% |
| !! | TTGAGTATTGATCTGTGCTC+AGG | - | tig0043583:2965-2984 | Msa1463680:CDS | 40.0% |
| !! | TGAGTATTGATCTGTGCTCA+GGG | - | tig0043583:2966-2985 | Msa1463680:CDS | 40.0% |
| ! | TGGATTGGACACAATGTGTT+TGG | + | tig0043583:3150-3169 | Msa1463680:intergenic | 40.0% |
| TCATCTTCAAGACCCAGTAA+TGG | - | tig0043583:3287-3306 | Msa1463680:intron | 40.0% | |
| CATCTTCAAGACCCAGTAAT+GGG | - | tig0043583:3288-3307 | Msa1463680:intron | 40.0% | |
| AGAATCCTTCCCATGAGATT+CGG | - | tig0043583:3610-3629 | Msa1463680:intron | 40.0% | |
| GTGCTATGCAAGTTTATAGC+TGG | - | tig0043583:3973-3992 | Msa1463680:intron | 40.0% | |
| !!! | TTTTCAGGTATGTTGCAGAG+AGG | - | tig0043583:4003-4022 | Msa1463680:intron | 40.0% |
| TCAACGTCTTCAACCAATTG+GGG | + | tig0043583:4031-4050 | Msa1463680:intergenic | 40.0% | |
| CTTCAACGTCTTCAACCAAT+TGG | + | tig0043583:4033-4052 | Msa1463680:intergenic | 40.0% | |
| CAATTGGTTGAAGACGTTGA+AGG | - | tig0043583:4031-4050 | Msa1463680:intron | 40.0% | |
| TATGTCATAGTTCATGTGGC+TGG | - | tig0043583:4141-4160 | Msa1463680:intron | 40.0% | |
| ! | TTCCAGATTGGATTGGACAA+AGG | - | tig0043583:4329-4348 | Msa1463680:intron | 40.0% |
| ATCCTTTGTCCAATCCAATC+TGG | + | tig0043583:4334-4353 | Msa1463680:intergenic | 40.0% | |
| CAATACTTCAACCTGCATAG+AGG | + | tig0043583:4965-4984 | Msa1463680:intergenic | 40.0% | |
| !! | CTATGCAGGTTGAAGTATTG+AGG | - | tig0043583:4965-4984 | Msa1463680:CDS | 40.0% |
| GTACATTGTGTTCGTGCTTA+CGG | - | tig0043583:5030-5049 | Msa1463680:five_prime_UTR | 40.0% | |
| CCAAAGGAAGGAAGAACAGA+AGG | + | tig0043583:2178-2197 | Msa1463680:intergenic | 45.0% | |
| CCTTCTGTTCTTCCTTCCTT+TGG | - | tig0043583:2175-2194 | Msa1463680:intron | 45.0% | |
| TGTCTTAGTACGTGCCTCTT+TGG | - | tig0043583:3383-3402 | Msa1463680:intron | 45.0% | |
| GAATCTCATGGGAAGGATTC+TGG | + | tig0043583:3611-3630 | Msa1463680:intergenic | 45.0% | |
| GAATCCTTCCCATGAGATTC+GGG | - | tig0043583:3611-3630 | Msa1463680:intron | 45.0% | |
| TTAACCCTCCCGAATCTCAT+GGG | + | tig0043583:3622-3641 | Msa1463680:intergenic | 45.0% | |
| GCTAACAGCTCCTCATTCTT+TGG | - | tig0043583:4392-4411 | Msa1463680:intron | 45.0% | |
| TTAAGACATCGCCTCTATGC+AGG | - | tig0043583:4951-4970 | Msa1463680:CDS | 45.0% | |
| CGAACACAATGTACAGATGC+TGG | + | tig0043583:5024-5043 | Msa1463680:intergenic | 45.0% | |
| !!! | TTTTTTTTTTTTTTTACATA+AGG | - | tig0043583:1887-1906 | Msa1463680:CDS | 5.0% |
| !! | AATAATTATATTATATTAGA+CGG | + | tig0043583:2600-2619 | Msa1463680:intergenic | 5.0% |
| !!! | TTAAATAATTTTTTTTACAA+AGG | - | tig0043583:2861-2880 | Msa1463680:intron | 5.0% |
| !!! | ATTTTAAAATTTGAAAATAA+TGG | - | tig0043583:4722-4741 | Msa1463680:intron | 5.0% |
| AAACCAGGGATGGAGACCAA+AGG | + | tig0043583:2194-2213 | Msa1463680:intergenic | 50.0% | |
| ! | TCGCTGATTGTGCACTCTGT+TGG | + | tig0043583:2483-2502 | Msa1463680:intergenic | 50.0% |
| CTACAATCAGTGGTGACCCT+GGG | + | tig0043583:2631-2650 | Msa1463680:intergenic | 50.0% | |
| TCTACAATCAGTGGTGACCC+TGG | + | tig0043583:2632-2651 | Msa1463680:intergenic | 50.0% | |
| !! | AGCGGTTTCTGTGTCGTTTC+TGG | - | tig0043583:2689-2708 | Msa1463680:intron | 50.0% |
| ACCAAGCGATGAAGTTCGAG+TGG | - | tig0043583:3488-3507 | Msa1463680:intron | 50.0% | |
| ACCACTCGAACTTCATCGCT+TGG | + | tig0043583:3492-3511 | Msa1463680:intergenic | 50.0% | |
| GTTAACCCTCCCGAATCTCA+TGG | + | tig0043583:3623-3642 | Msa1463680:intergenic | 50.0% | |
| GTGTTGCGTATGTGCGTCAT+AGG | + | tig0043583:3852-3871 | Msa1463680:intergenic | 50.0% | |
| GGATTGGACAAAGGATCCCA+AGG | - | tig0043583:4338-4357 | Msa1463680:intron | 50.0% | |
| CAGGGATGGAGACCAAAGGA+AGG | + | tig0043583:2190-2209 | Msa1463680:intergenic | 55.0% | |
| CTTCCTTTGGTCTCCATCCC+TGG | - | tig0043583:2188-2207 | Msa1463680:intron | 55.0% | |
| TGTGCTCAGGGTCATCACTC+TGG | - | tig0043583:2978-2997 | Msa1463680:CDS | 55.0% | |
| TTCTGGCAGTACAGTCGAGG+AGG | + | tig0043583:3594-3613 | Msa1463680:intergenic | 55.0% | |
| GGATTCTGGCAGTACAGTCG+AGG | + | tig0043583:3597-3616 | Msa1463680:intergenic | 55.0% | |
| TCCTTCCCATGAGATTCGGG+AGG | - | tig0043583:3614-3633 | Msa1463680:intron | 55.0% | |
| CCTTCCCATGAGATTCGGGA+GGG | - | tig0043583:3615-3634 | Msa1463680:intron | 55.0% | |
| TTGCAGAGAGGAGCCCCAAT+TGG | - | tig0043583:4015-4034 | Msa1463680:intron | 55.0% | |
| TCTACACCCTCTGCTGCAGT+TGG | - | tig0043583:4065-4084 | Msa1463680:intron | 55.0% | |
| ACCTCTCCAACTGCAGCAGA+GGG | + | tig0043583:4074-4093 | Msa1463680:intergenic | 55.0% | |
| TACCTCTCCAACTGCAGCAG+AGG | + | tig0043583:4075-4094 | Msa1463680:intergenic | 55.0% | |
| ATCAGTGGTGACCCTGGGCA+CGG | + | tig0043583:2626-2645 | Msa1463680:intergenic | 60.0% | |
| CCCTCCCGAATCTCATGGGA+AGG | + | tig0043583:3618-3637 | Msa1463680:intergenic | 60.0% | |
| ACCCTCTGCTGCAGTTGGAG+AGG | - | tig0043583:4070-4089 | Msa1463680:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0043583 | gene | 1853 | 5164 | 1853 | ID=Msa1463680;Name=Msa1463680 |
| tig0043583 | mRNA | 1853 | 5164 | 1853 | ID=Msa1463680-mRNA-1;Parent=Msa1463680;Name=Msa1463680-mRNA-1;_AED=0.06;_eAED=0.06;_QI=157|1|0.75|1|1|1|4|0|174 |
| tig0043583 | exon | 1853 | 2044 | 1853 | ID=Msa1463680-mRNA-1:exon:24157;Parent=Msa1463680-mRNA-1 |
| tig0043583 | exon | 2632 | 2682 | 2632 | ID=Msa1463680-mRNA-1:exon:24156;Parent=Msa1463680-mRNA-1 |
| tig0043583 | exon | 2926 | 3007 | 2926 | ID=Msa1463680-mRNA-1:exon:24155;Parent=Msa1463680-mRNA-1 |
| tig0043583 | exon | 4808 | 5164 | 4808 | ID=Msa1463680-mRNA-1:exon:24154;Parent=Msa1463680-mRNA-1 |
| tig0043583 | five_prime_UTR | 5008 | 5164 | 5008 | ID=Msa1463680-mRNA-1:five_prime_utr;Parent=Msa1463680-mRNA-1 |
| tig0043583 | CDS | 4808 | 5007 | 4808 | ID=Msa1463680-mRNA-1:cds;Parent=Msa1463680-mRNA-1 |
| tig0043583 | CDS | 2926 | 3007 | 2926 | ID=Msa1463680-mRNA-1:cds;Parent=Msa1463680-mRNA-1 |
| tig0043583 | CDS | 2632 | 2682 | 2632 | ID=Msa1463680-mRNA-1:cds;Parent=Msa1463680-mRNA-1 |
| tig0043583 | CDS | 1853 | 2044 | 1853 | ID=Msa1463680-mRNA-1:cds;Parent=Msa1463680-mRNA-1 |
| Gene Sequence |
| Protein sequence |
