Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1466600 | XP_003613256.1 | 88.525 | 183 | 21 | 0 | 1 | 183 | 126 | 308 | 1.28e-110 | 338 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1466600 | sp|Q8RXF8|MIRO1_ARATH | 68.478 | 184 | 56 | 1 | 1 | 182 | 151 | 334 | 1.13e-83 | 262 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1466600 | G7K1G1 | 88.525 | 183 | 21 | 0 | 1 | 183 | 126 | 308 | 6.11e-111 | 338 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1374370 | Msa1466600 | 0.802178 | 6.346799e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1466600 | MtrunA17_Chr5g0413741 | 88.525 | 183 | 21 | 0 | 1 | 183 | 177 | 359 | 2.65e-114 | 339 |
| Msa1466600 | MtrunA17_Chr5g0417151 | 76.923 | 182 | 42 | 0 | 1 | 182 | 112 | 293 | 1.78e-99 | 300 |
| Msa1466600 | MtrunA17_Chr1g0191811 | 74.176 | 182 | 47 | 0 | 1 | 182 | 150 | 331 | 1.47e-94 | 287 |
| Msa1466600 | MtrunA17_Chr7g0259771 | 57.377 | 183 | 77 | 1 | 1 | 182 | 142 | 324 | 1.01e-68 | 220 |
| Msa1466600 | MtrunA17_Chr1g0185591 | 53.552 | 183 | 84 | 1 | 1 | 182 | 146 | 328 | 5.66e-62 | 202 |
| Msa1466600 | MtrunA17_Chr4g0073381 | 52.747 | 182 | 86 | 0 | 1 | 182 | 91 | 272 | 4.58e-58 | 191 |
| Msa1466600 | MtrunA17_Chr4g0073061 | 54.762 | 168 | 76 | 0 | 16 | 183 | 190 | 357 | 2.31e-53 | 179 |
| Msa1466600 | MtrunA17_Chr5g0413461 | 75.238 | 105 | 26 | 0 | 78 | 182 | 4 | 108 | 3.68e-45 | 154 |
| Msa1466600 | MtrunA17_Chr8g0338031 | 34.694 | 147 | 78 | 3 | 2 | 146 | 182 | 312 | 4.95e-15 | 72.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1466600 | AT5G27540.1 | 68.478 | 184 | 56 | 1 | 1 | 182 | 151 | 334 | 1.15e-84 | 262 |
| Msa1466600 | AT5G27540.2 | 68.478 | 184 | 56 | 1 | 1 | 182 | 151 | 334 | 1.15e-84 | 262 |
| Msa1466600 | AT3G63150.1 | 55.435 | 184 | 81 | 1 | 1 | 183 | 148 | 331 | 6.66e-66 | 213 |
| Msa1466600 | AT3G05310.3 | 49.730 | 185 | 91 | 1 | 1 | 183 | 3 | 187 | 5.78e-62 | 199 |
| Msa1466600 | AT3G05310.2 | 49.730 | 185 | 91 | 1 | 1 | 183 | 3 | 187 | 1.04e-61 | 199 |
| Msa1466600 | AT3G05310.1 | 49.730 | 185 | 91 | 1 | 1 | 183 | 148 | 332 | 9.99e-61 | 199 |
Find 37 sgRNAs with CRISPR-Local
Find 128 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTGCAGCCATGTGAAATTT+TGG | 0.170946 | tig0047838:-435 | Msa1466600:CDS |
| AAAAGAAGCAATTGATTTCT+TGG | 0.178806 | tig0047838:-68 | Msa1466600:CDS |
| CATGCTCTCTTCATAGAAAA+AGG | 0.210173 | tig0047838:-332 | Msa1466600:CDS |
| CCCCGTTCATTCACGCCTTC+AGG | 0.280059 | tig0047838:+383 | Msa1466600:intergenic |
| TTTGAAGCGTGCGCCTGATC+AGG | 0.370706 | tig0047838:-228 | Msa1466600:intron |
| TCCTGAAGGCGTGAATGAAC+GGG | 0.372474 | tig0047838:-384 | Msa1466600:CDS |
| TCCATGCATGCTTCAATCTC+AGG | 0.374101 | tig0047838:+945 | Msa1466600:intergenic |
| CATGTCTCCTTTATTTGATC+GGG | 0.391465 | tig0047838:-765 | Msa1466600:CDS |
| CCATGTCTCCTTTATTTGAT+CGG | 0.411512 | tig0047838:-766 | Msa1466600:CDS |
| TGTGACTCCCGATCAAATAA+AGG | 0.435376 | tig0047838:+758 | Msa1466600:intergenic |
| GAACGGGGACTTACTTCAAC+AGG | 0.436063 | tig0047838:-368 | Msa1466600:CDS |
| CCCGCACACAACGAGGCGTT+AGG | 0.441878 | tig0047838:+732 | Msa1466600:intergenic |
| ACAATCTTTGATGAATTTGA+TGG | 0.452038 | tig0047838:-43 | Msa1466600:CDS |
| TTCCTGAAGGCGTGAATGAA+CGG | 0.489057 | tig0047838:-385 | Msa1466600:CDS |
| CATTTAATTCAGCATCACTA+AGG | 0.489291 | tig0047838:+663 | Msa1466600:intergenic |
| CTTTGTGATCATGACAAAGA+TGG | 0.493708 | tig0047838:-689 | Msa1466600:CDS |
| ATCTTTGTCATGATCACAAA+GGG | 0.507037 | tig0047838:+691 | Msa1466600:intergenic |
| CCCTAACGCCTCGTTGTGTG+CGG | 0.512774 | tig0047838:-733 | Msa1466600:CDS |
| CCCTGAGATTGAAGCATGCA+TGG | 0.526234 | tig0047838:-946 | Msa1466600:CDS |
| CCGATCAAATAAAGGAGACA+TGG | 0.536488 | tig0047838:+766 | Msa1466600:intergenic |
| TGATCAGGCGCACGCTTCAA+AGG | 0.540105 | tig0047838:+230 | Msa1466600:intergenic |
| AAAATTTCACATGGCTGCAG+AGG | 0.548934 | tig0047838:+437 | Msa1466600:intergenic |
| CCTAACGCCTCGTTGTGTGC+GGG | 0.549771 | tig0047838:-732 | Msa1466600:CDS |
| CCGCACACAACGAGGCGTTA+GGG | 0.564872 | tig0047838:+733 | Msa1466600:intergenic |
| ACGGTCCATGTTGCCTCGAG+AGG | 0.574862 | tig0047838:+308 | Msa1466600:intergenic |
| TTTGTGATCATGACAAAGAT+GGG | 0.576839 | tig0047838:-688 | Msa1466600:CDS |
| GTTGTGTGCGGGCTTTGAAG+CGG | 0.588125 | tig0047838:-721 | Msa1466600:CDS |
| AAGGGCCTCTCGAGGCAACA+TGG | 0.590801 | tig0047838:-313 | Msa1466600:CDS |
| CCATGCATGCTTCAATCTCA+GGG | 0.595175 | tig0047838:+946 | Msa1466600:intergenic |
| ATTTAATTCAGCATCACTAA+GGG | 0.600883 | tig0047838:+664 | Msa1466600:intergenic |
| CCTGAAGGCGTGAATGAACG+GGG | 0.614204 | tig0047838:-383 | Msa1466600:CDS |
| CGATCAAATAAAGGAGACAT+GGG | 0.614472 | tig0047838:+767 | Msa1466600:intergenic |
| TCAGGCGCACGCTTCAAAGG+TGG | 0.626241 | tig0047838:+233 | Msa1466600:intergenic |
| TTTACATCCAAAATTTCACA+TGG | 0.628253 | tig0047838:+428 | Msa1466600:intergenic |
| CATCTTTGTCATGATCACAA+AGG | 0.635725 | tig0047838:+690 | Msa1466600:intergenic |
| TTCAAAGCCCGCACACAACG+AGG | 0.686928 | tig0047838:+725 | Msa1466600:intergenic |
| TTCGTCATATAAGATTGTCG+AGG | 0.704836 | tig0047838:-919 | Msa1466600:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAGAAAAAGAATTTGATT+TGG | + | tig0047838:114-133 | Msa1466600:intergenic | 15.0% |
| !!! | TTTATTCTCAATTGATTTAA+TGG | - | tig0047838:876-895 | Msa1466600:intron | 15.0% |
| !! | AAAAGAAAAAGAATTTGATT+TGG | + | tig0047838:114-133 | Msa1466600:intergenic | 15.0% |
| !!! | TTTATTCTCAATTGATTTAA+TGG | - | tig0047838:876-895 | Msa1466600:intron | 15.0% |
| !!! | AGAATTTGATTTGGAATATA+AGG | + | tig0047838:105-124 | Msa1466600:intergenic | 20.0% |
| !!! | TTCAATTTGTTGACAATATA+TGG | - | tig0047838:846-865 | Msa1466600:intron | 20.0% |
| !!! | AGAATTTGATTTGGAATATA+AGG | + | tig0047838:105-124 | Msa1466600:intergenic | 20.0% |
| !!! | TTCAATTTGTTGACAATATA+TGG | - | tig0047838:846-865 | Msa1466600:intron | 20.0% |
| ! | TAATTAAGTTTCCTTGTTGA+AGG | - | tig0047838:156-175 | Msa1466600:intron | 25.0% |
| ! | ATTTAATTCAGCATCACTAA+GGG | + | tig0047838:326-345 | Msa1466600:intergenic | 25.0% |
| ! | TATATTAGATGTCAAAATCG+TGG | - | tig0047838:370-389 | Msa1466600:CDS | 25.0% |
| ! | AATCTAACTAAACTATCTAC+AGG | - | tig0047838:510-529 | Msa1466600:intron | 25.0% |
| ! | TTTACATCCAAAATTTCACA+TGG | + | tig0047838:562-581 | Msa1466600:intergenic | 25.0% |
| !! | ATGTGAAATTTTGGATGTAA+AGG | - | tig0047838:561-580 | Msa1466600:intron | 25.0% |
| !!! | ATATCCAAACTTTTTTAGCA+CGG | + | tig0047838:701-720 | Msa1466600:intergenic | 25.0% |
| !! | TTTTCTTTTGACATGAATTG+TGG | - | tig0047838:783-802 | Msa1466600:CDS | 25.0% |
| ! | TCAACAAATTGAATACAAAC+AGG | + | tig0047838:839-858 | Msa1466600:intergenic | 25.0% |
| !! | AAAAGAAGCAATTGATTTCT+TGG | - | tig0047838:919-938 | Msa1466600:intron | 25.0% |
| ! | ACAATCTTTGATGAATTTGA+TGG | - | tig0047838:944-963 | Msa1466600:CDS | 25.0% |
| ! | TAATTAAGTTTCCTTGTTGA+AGG | - | tig0047838:156-175 | Msa1466600:intron | 25.0% |
| ! | ATTTAATTCAGCATCACTAA+GGG | + | tig0047838:326-345 | Msa1466600:intergenic | 25.0% |
| ! | TATATTAGATGTCAAAATCG+TGG | - | tig0047838:370-389 | Msa1466600:CDS | 25.0% |
| ! | AATCTAACTAAACTATCTAC+AGG | - | tig0047838:510-529 | Msa1466600:intron | 25.0% |
| ! | TTTACATCCAAAATTTCACA+TGG | + | tig0047838:562-581 | Msa1466600:intergenic | 25.0% |
| !! | ATGTGAAATTTTGGATGTAA+AGG | - | tig0047838:561-580 | Msa1466600:intron | 25.0% |
| !!! | ATATCCAAACTTTTTTAGCA+CGG | + | tig0047838:701-720 | Msa1466600:intergenic | 25.0% |
| !! | TTTTCTTTTGACATGAATTG+TGG | - | tig0047838:783-802 | Msa1466600:CDS | 25.0% |
| ! | TCAACAAATTGAATACAAAC+AGG | + | tig0047838:839-858 | Msa1466600:intergenic | 25.0% |
| !! | AAAAGAAGCAATTGATTTCT+TGG | - | tig0047838:919-938 | Msa1466600:intron | 25.0% |
| ! | ACAATCTTTGATGAATTTGA+TGG | - | tig0047838:944-963 | Msa1466600:CDS | 25.0% |
| ! | AGTTTTCTTCTTTGCACAAA+AGG | - | tig0047838:186-205 | Msa1466600:intron | 30.0% |
| ATCTTTGTCATGATCACAAA+GGG | + | tig0047838:299-318 | Msa1466600:intergenic | 30.0% | |
| TTTGTGATCATGACAAAGAT+GGG | - | tig0047838:299-318 | Msa1466600:CDS | 30.0% | |
| CATTTAATTCAGCATCACTA+AGG | + | tig0047838:327-346 | Msa1466600:intergenic | 30.0% | |
| ! | TGCTGAATTAAATGCTTTTC+AGG | - | tig0047838:333-352 | Msa1466600:CDS | 30.0% |
| TTTGCACAAATCTTATATGC+AGG | + | tig0047838:491-510 | Msa1466600:intergenic | 30.0% | |
| ! | TGAAATTTTGGATGTAAAGG+AGG | - | tig0047838:564-583 | Msa1466600:intron | 30.0% |
| ATGCTCTCTTCATAGAAAAA+GGG | - | tig0047838:656-675 | Msa1466600:CDS | 30.0% | |
| ! | AGTTTTCTTCTTTGCACAAA+AGG | - | tig0047838:186-205 | Msa1466600:intron | 30.0% |
| ATCTTTGTCATGATCACAAA+GGG | + | tig0047838:299-318 | Msa1466600:intergenic | 30.0% | |
| TTTGTGATCATGACAAAGAT+GGG | - | tig0047838:299-318 | Msa1466600:CDS | 30.0% | |
| CATTTAATTCAGCATCACTA+AGG | + | tig0047838:327-346 | Msa1466600:intergenic | 30.0% | |
| ! | TGCTGAATTAAATGCTTTTC+AGG | - | tig0047838:333-352 | Msa1466600:CDS | 30.0% |
| TTTGCACAAATCTTATATGC+AGG | + | tig0047838:491-510 | Msa1466600:intergenic | 30.0% | |
| ! | TGAAATTTTGGATGTAAAGG+AGG | - | tig0047838:564-583 | Msa1466600:intron | 30.0% |
| ATGCTCTCTTCATAGAAAAA+GGG | - | tig0047838:656-675 | Msa1466600:CDS | 30.0% | |
| TTCGTCATATAAGATTGTCG+AGG | - | tig0047838:68-87 | Msa1466600:CDS | 35.0% | |
| AACTTCAACAACCTTCAACA+AGG | + | tig0047838:170-189 | Msa1466600:intergenic | 35.0% | |
| CGATCAAATAAAGGAGACAT+GGG | + | tig0047838:223-242 | Msa1466600:intergenic | 35.0% | |
| ! | CCATGTCTCCTTTATTTGAT+CGG | - | tig0047838:221-240 | Msa1466600:intron | 35.0% |
| ! | CATGTCTCCTTTATTTGATC+GGG | - | tig0047838:222-241 | Msa1466600:intron | 35.0% |
| CATCTTTGTCATGATCACAA+AGG | + | tig0047838:300-319 | Msa1466600:intergenic | 35.0% | |
| CTTTGTGATCATGACAAAGA+TGG | - | tig0047838:298-317 | Msa1466600:CDS | 35.0% | |
| TGTTCACATCATGTTATGGT+AGG | - | tig0047838:446-465 | Msa1466600:CDS | 35.0% | |
| TGTTATGGTAGGTTATGTTG+TGG | - | tig0047838:457-476 | Msa1466600:CDS | 35.0% | |
| ! | GTGCAAAAGAATTTTCCTGA+AGG | - | tig0047838:589-608 | Msa1466600:intron | 35.0% |
| CATGCTCTCTTCATAGAAAA+AGG | - | tig0047838:655-674 | Msa1466600:CDS | 35.0% | |
| GTCAAAAGAAAAACCTGATC+AGG | + | tig0047838:775-794 | Msa1466600:intergenic | 35.0% | |
| TTCGTCATATAAGATTGTCG+AGG | - | tig0047838:68-87 | Msa1466600:CDS | 35.0% | |
| AACTTCAACAACCTTCAACA+AGG | + | tig0047838:170-189 | Msa1466600:intergenic | 35.0% | |
| CGATCAAATAAAGGAGACAT+GGG | + | tig0047838:223-242 | Msa1466600:intergenic | 35.0% | |
| ! | CCATGTCTCCTTTATTTGAT+CGG | - | tig0047838:221-240 | Msa1466600:intron | 35.0% |
| ! | CATGTCTCCTTTATTTGATC+GGG | - | tig0047838:222-241 | Msa1466600:intron | 35.0% |
| CATCTTTGTCATGATCACAA+AGG | + | tig0047838:300-319 | Msa1466600:intergenic | 35.0% | |
| CTTTGTGATCATGACAAAGA+TGG | - | tig0047838:298-317 | Msa1466600:CDS | 35.0% | |
| TGTTCACATCATGTTATGGT+AGG | - | tig0047838:446-465 | Msa1466600:CDS | 35.0% | |
| TGTTATGGTAGGTTATGTTG+TGG | - | tig0047838:457-476 | Msa1466600:CDS | 35.0% | |
| ! | GTGCAAAAGAATTTTCCTGA+AGG | - | tig0047838:589-608 | Msa1466600:intron | 35.0% |
| CATGCTCTCTTCATAGAAAA+AGG | - | tig0047838:655-674 | Msa1466600:CDS | 35.0% | |
| GTCAAAAGAAAAACCTGATC+AGG | + | tig0047838:775-794 | Msa1466600:intergenic | 35.0% | |
| CCGATCAAATAAAGGAGACA+TGG | + | tig0047838:224-243 | Msa1466600:intergenic | 40.0% | |
| TGTGACTCCCGATCAAATAA+AGG | + | tig0047838:232-251 | Msa1466600:intergenic | 40.0% | |
| ACACCTTGTAGCTTGAATAC+AGG | - | tig0047838:421-440 | Msa1466600:CDS | 40.0% | |
| AAGCCTGTATTCAAGCTACA+AGG | + | tig0047838:427-446 | Msa1466600:intergenic | 40.0% | |
| ! | GGCTTGTTCACATCATGTTA+TGG | - | tig0047838:442-461 | Msa1466600:CDS | 40.0% |
| ATGGTAGGTTATGTTGTGGT+AGG | - | tig0047838:461-480 | Msa1466600:intron | 40.0% | |
| AAAATTTCACATGGCTGCAG+AGG | + | tig0047838:553-572 | Msa1466600:intergenic | 40.0% | |
| ! | TCTGCAGCCATGTGAAATTT+TGG | - | tig0047838:552-571 | Msa1466600:intron | 40.0% |
| TGGACCGTGCTAAAAAAGTT+TGG | - | tig0047838:694-713 | Msa1466600:CDS | 40.0% | |
| CCGATCAAATAAAGGAGACA+TGG | + | tig0047838:224-243 | Msa1466600:intergenic | 40.0% | |
| TGTGACTCCCGATCAAATAA+AGG | + | tig0047838:232-251 | Msa1466600:intergenic | 40.0% | |
| ACACCTTGTAGCTTGAATAC+AGG | - | tig0047838:421-440 | Msa1466600:CDS | 40.0% | |
| AAGCCTGTATTCAAGCTACA+AGG | + | tig0047838:427-446 | Msa1466600:intergenic | 40.0% | |
| ! | GGCTTGTTCACATCATGTTA+TGG | - | tig0047838:442-461 | Msa1466600:CDS | 40.0% |
| ATGGTAGGTTATGTTGTGGT+AGG | - | tig0047838:461-480 | Msa1466600:intron | 40.0% | |
| AAAATTTCACATGGCTGCAG+AGG | + | tig0047838:553-572 | Msa1466600:intergenic | 40.0% | |
| ! | TCTGCAGCCATGTGAAATTT+TGG | - | tig0047838:552-571 | Msa1466600:intron | 40.0% |
| TGGACCGTGCTAAAAAAGTT+TGG | - | tig0047838:694-713 | Msa1466600:CDS | 40.0% | |
| CCATGCATGCTTCAATCTCA+GGG | + | tig0047838:44-63 | Msa1007010:intergenic | 45.0% | |
| TCCATGCATGCTTCAATCTC+AGG | + | tig0047838:45-64 | Msa1466600:intergenic | 45.0% | |
| ! | TTCCTGAAGGCGTGAATGAA+CGG | - | tig0047838:602-621 | Msa1466600:intron | 45.0% |
| CCATGCATGCTTCAATCTCA+GGG | + | tig0047838:44-63 | Msa1466600:intergenic | 45.0% | |
| TCCATGCATGCTTCAATCTC+AGG | + | tig0047838:45-64 | Msa1466600:intergenic | 45.0% | |
| ! | TTCCTGAAGGCGTGAATGAA+CGG | - | tig0047838:602-621 | Msa1466600:intron | 45.0% |
| CCCTGAGATTGAAGCATGCA+TGG | - | tig0047838:41-60 | Msa1466600:CDS | 50.0% | |
| ! | TCCTGAAGGCGTGAATGAAC+GGG | - | tig0047838:603-622 | Msa1466600:intron | 50.0% |
| GAACGGGGACTTACTTCAAC+AGG | - | tig0047838:619-638 | Msa1466600:intron | 50.0% | |
| CATAGAAAAAGGGCCTCTCG+AGG | - | tig0047838:666-685 | Msa1466600:CDS | 50.0% | |
| CCCTGAGATTGAAGCATGCA+TGG | - | tig0047838:41-60 | Msa1466600:CDS | 50.0% | |
| ! | TCCTGAAGGCGTGAATGAAC+GGG | - | tig0047838:603-622 | Msa1466600:intron | 50.0% |
| GAACGGGGACTTACTTCAAC+AGG | - | tig0047838:619-638 | Msa1466600:intron | 50.0% | |
| CATAGAAAAAGGGCCTCTCG+AGG | - | tig0047838:666-685 | Msa1466600:CDS | 50.0% | |
| TTCAAAGCCCGCACACAACG+AGG | + | tig0047838:265-284 | Msa1466600:intergenic | 55.0% | |
| !! | GTTGTGTGCGGGCTTTGAAG+CGG | - | tig0047838:266-285 | Msa1466600:CDS | 55.0% |
| ! | CCTGAAGGCGTGAATGAACG+GGG | - | tig0047838:604-623 | Msa1466600:intron | 55.0% |
| TGATCAGGCGCACGCTTCAA+AGG | + | tig0047838:760-779 | Msa1466600:intergenic | 55.0% | |
| ! | TTTGAAGCGTGCGCCTGATC+AGG | - | tig0047838:759-778 | Msa1466600:CDS | 55.0% |
| TTCAAAGCCCGCACACAACG+AGG | + | tig0047838:265-284 | Msa1466600:intergenic | 55.0% | |
| !! | GTTGTGTGCGGGCTTTGAAG+CGG | - | tig0047838:266-285 | Msa1466600:CDS | 55.0% |
| ! | CCTGAAGGCGTGAATGAACG+GGG | - | tig0047838:604-623 | Msa1466600:intron | 55.0% |
| TGATCAGGCGCACGCTTCAA+AGG | + | tig0047838:760-779 | Msa1466600:intergenic | 55.0% | |
| ! | TTTGAAGCGTGCGCCTGATC+AGG | - | tig0047838:759-778 | Msa1466600:CDS | 55.0% |
| ! | CCGCACACAACGAGGCGTTA+GGG | + | tig0047838:257-276 | Msa1466600:intergenic | 60.0% |
| CCCTAACGCCTCGTTGTGTG+CGG | - | tig0047838:254-273 | Msa1466600:CDS | 60.0% | |
| CCTAACGCCTCGTTGTGTGC+GGG | - | tig0047838:255-274 | Msa1466600:CDS | 60.0% | |
| CCCCGTTCATTCACGCCTTC+AGG | + | tig0047838:607-626 | Msa1466600:intergenic | 60.0% | |
| AAGGGCCTCTCGAGGCAACA+TGG | - | tig0047838:674-693 | Msa1466600:CDS | 60.0% | |
| ACGGTCCATGTTGCCTCGAG+AGG | + | tig0047838:682-701 | Msa1466600:intergenic | 60.0% | |
| TCAGGCGCACGCTTCAAAGG+TGG | + | tig0047838:757-776 | Msa1466600:intergenic | 60.0% | |
| ! | CCGCACACAACGAGGCGTTA+GGG | + | tig0047838:257-276 | Msa1466600:intergenic | 60.0% |
| CCCTAACGCCTCGTTGTGTG+CGG | - | tig0047838:254-273 | Msa1466600:CDS | 60.0% | |
| CCTAACGCCTCGTTGTGTGC+GGG | - | tig0047838:255-274 | Msa1466600:CDS | 60.0% | |
| CCCCGTTCATTCACGCCTTC+AGG | + | tig0047838:607-626 | Msa1466600:intergenic | 60.0% | |
| AAGGGCCTCTCGAGGCAACA+TGG | - | tig0047838:674-693 | Msa1466600:CDS | 60.0% | |
| ACGGTCCATGTTGCCTCGAG+AGG | + | tig0047838:682-701 | Msa1466600:intergenic | 60.0% | |
| TCAGGCGCACGCTTCAAAGG+TGG | + | tig0047838:757-776 | Msa1466600:intergenic | 60.0% | |
| ! | CCCGCACACAACGAGGCGTT+AGG | + | tig0047838:258-277 | Msa1466600:intergenic | 65.0% |
| ! | CCCGCACACAACGAGGCGTT+AGG | + | tig0047838:258-277 | Msa1466600:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0047838 | gene | 36 | 973 | 36 | ID=Msa1466600;Name=Msa1466600 |
| tig0047838 | mRNA | 36 | 973 | 36 | ID=Msa1466600-mRNA-1;Parent=Msa1466600;Name=Msa1466600-mRNA-1;_AED=0.12;_eAED=0.12;_QI=0|0.33|0|0.5|1|1|4|0|183 |
| tig0047838 | exon | 920 | 973 | 920 | ID=Msa1466600-mRNA-1:exon:25106;Parent=Msa1466600-mRNA-1 |
| tig0047838 | exon | 655 | 831 | 655 | ID=Msa1466600-mRNA-1:exon:25105;Parent=Msa1466600-mRNA-1 |
| tig0047838 | exon | 229 | 477 | 229 | ID=Msa1466600-mRNA-1:exon:25104;Parent=Msa1466600-mRNA-1 |
| tig0047838 | exon | 36 | 104 | 36 | ID=Msa1466600-mRNA-1:exon:25103;Parent=Msa1466600-mRNA-1 |
| tig0047838 | CDS | 920 | 973 | 920 | ID=Msa1466600-mRNA-1:cds;Parent=Msa1466600-mRNA-1 |
| tig0047838 | CDS | 655 | 831 | 655 | ID=Msa1466600-mRNA-1:cds;Parent=Msa1466600-mRNA-1 |
| tig0047838 | CDS | 229 | 477 | 229 | ID=Msa1466600-mRNA-1:cds;Parent=Msa1466600-mRNA-1 |
| tig0047838 | CDS | 36 | 104 | 36 | ID=Msa1466600-mRNA-1:cds;Parent=Msa1466600-mRNA-1 |
| Gene Sequence |
| Protein sequence |
