Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene000135.t1 | KEH27344.1 | 99.6 | 777 | 3 | 0 | 1 | 777 | 1 | 777 | 0.00E+00 | 1531.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene000135.t1 | P92943 | 83.8 | 776 | 118 | 5 | 1 | 774 | 1 | 770 | 0.0e+00 | 1286.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene000135.t1 | A0A072UC04 | 99.6 | 777 | 3 | 0 | 1 | 777 | 1 | 777 | 0.0e+00 | 1531.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene58021 | MS.gene000135 | PPI |
| MS.gene036703 | MS.gene000135 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene000135.t1 | MTR_5g005990 | 99.614 | 777 | 3 | 0 | 1 | 777 | 1 | 777 | 0.0 | 1584 |
| MS.gene000135.t1 | MTR_5g005990 | 99.612 | 774 | 3 | 0 | 1 | 774 | 1 | 774 | 0.0 | 1580 |
| MS.gene000135.t1 | MTR_5g005990 | 99.611 | 772 | 3 | 0 | 1 | 772 | 1 | 772 | 0.0 | 1576 |
| MS.gene000135.t1 | MTR_5g005990 | 99.351 | 616 | 4 | 0 | 162 | 777 | 12 | 627 | 0.0 | 1258 |
| MS.gene000135.t1 | MTR_5g005990 | 99.345 | 611 | 4 | 0 | 162 | 772 | 12 | 622 | 0.0 | 1249 |
| MS.gene000135.t1 | MTR_7g029345 | 46.217 | 727 | 362 | 13 | 44 | 756 | 64 | 775 | 0.0 | 616 |
| MS.gene000135.t1 | MTR_4g134730 | 50.070 | 719 | 336 | 13 | 46 | 758 | 61 | 762 | 0.0 | 615 |
| MS.gene000135.t1 | MTR_2g005410 | 46.667 | 765 | 367 | 17 | 5 | 756 | 10 | 746 | 0.0 | 605 |
| MS.gene000135.t1 | MTR_6g023770 | 46.186 | 721 | 362 | 12 | 44 | 756 | 52 | 754 | 0.0 | 583 |
| MS.gene000135.t1 | MTR_6g065650 | 46.528 | 720 | 361 | 13 | 46 | 758 | 78 | 780 | 0.0 | 577 |
| MS.gene000135.t1 | MTR_6g023770 | 45.915 | 710 | 358 | 12 | 55 | 756 | 10 | 701 | 0.0 | 569 |
| MS.gene000135.t1 | MTR_4g115640 | 44.764 | 764 | 397 | 17 | 1 | 758 | 1 | 745 | 0.0 | 551 |
| MS.gene000135.t1 | MTR_6g023770 | 47.114 | 641 | 315 | 10 | 123 | 756 | 2 | 625 | 2.93e-178 | 526 |
| MS.gene000135.t1 | MTR_6g065650 | 46.533 | 649 | 323 | 12 | 117 | 758 | 3 | 634 | 1.54e-174 | 516 |
| MS.gene000135.t1 | MTR_5g009580 | 39.665 | 179 | 88 | 3 | 445 | 618 | 3 | 166 | 6.56e-16 | 77.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene000135.t1 | AT5G26240 | 83.398 | 777 | 122 | 4 | 1 | 776 | 1 | 771 | 0.0 | 1252 |
| MS.gene000135.t1 | AT5G26240 | 83.763 | 776 | 118 | 5 | 1 | 774 | 1 | 770 | 0.0 | 1250 |
| MS.gene000135.t1 | AT3G27170 | 46.841 | 728 | 352 | 14 | 44 | 755 | 51 | 759 | 0.0 | 610 |
| MS.gene000135.t1 | AT5G40890 | 46.750 | 723 | 354 | 14 | 44 | 755 | 52 | 754 | 0.0 | 602 |
| MS.gene000135.t1 | AT5G49890 | 46.772 | 759 | 354 | 18 | 29 | 758 | 29 | 766 | 0.0 | 600 |
| MS.gene000135.t1 | AT5G33280 | 46.797 | 718 | 362 | 13 | 46 | 758 | 38 | 740 | 0.0 | 587 |
| MS.gene000135.t1 | AT5G40890 | 47.738 | 641 | 306 | 12 | 125 | 755 | 1 | 622 | 0.0 | 545 |
Find 169 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGCCAGCGACGTATGATTTC+TGG | 0.160920 | 5.4:-1836848 | None:intergenic |
| ATTGACCTGCCTCCAGTTCT+TGG | 0.169192 | 5.4:-1843506 | None:intergenic |
| CCTCGTCCTTCACGTGTTCT+TGG | 0.178457 | 5.4:+1843908 | MS.gene000135:CDS |
| GATCAGGCGGATTCATAATA+TGG | 0.192818 | 5.4:+1839481 | MS.gene000135:CDS |
| TCTTATGTGTTACAGGTATT+TGG | 0.198414 | 5.4:+1837219 | MS.gene000135:intron |
| ATATTCCGCATCTCATATTT+AGG | 0.207653 | 5.4:-1842473 | None:intergenic |
| AGTGGAAAATGTGGACATTT+TGG | 0.209488 | 5.4:+1839459 | MS.gene000135:CDS |
| TTTAAGTAACCCTTGATTTC+AGG | 0.210137 | 5.4:-1836963 | None:intergenic |
| AGTGGAGAACCACTTGTTAT+TGG | 0.253053 | 5.4:+1843274 | MS.gene000135:CDS |
| ATGGCTATTATCGGGGTTAT+TGG | 0.258146 | 5.4:+1839644 | MS.gene000135:CDS |
| AGTTTCTCTGTGTGTCATTA+TGG | 0.281368 | 5.4:+1842242 | MS.gene000135:CDS |
| ATTGGTCATTCTGCAGTCTA+AGG | 0.299378 | 5.4:+1843451 | MS.gene000135:CDS |
| TTAACTTTCAGGCATGATTC+TGG | 0.301234 | 5.4:+1843600 | MS.gene000135:intron |
| CTAACATCAGTTATTTCATT+TGG | 0.304045 | 5.4:+1840107 | MS.gene000135:CDS |
| TGCACTGAACAAATTCCTTA+TGG | 0.310798 | 5.4:-1840571 | None:intergenic |
| ATGAAATAACTGATGTTAGA+AGG | 0.317616 | 5.4:-1840103 | None:intergenic |
| ATTTCCAGATACGCTTTGTT+AGG | 0.323758 | 5.4:+1842183 | MS.gene000135:intron |
| ATATCTTCCGGTACAATATA+TGG | 0.340226 | 5.4:-1843732 | None:intergenic |
| CATATTCCTTTACTAGAAAC+AGG | 0.344319 | 5.4:-1843636 | None:intergenic |
| CTCTTTGCCTCGTGTTGTTA+AGG | 0.348699 | 5.4:+1843104 | MS.gene000135:CDS |
| TCCTCGATGATGACGGCGTT+GGG | 0.366873 | 5.4:+1834823 | MS.gene000135:CDS |
| TGAATTTAGATGATACTTAG+TGG | 0.378655 | 5.4:-1838931 | None:intergenic |
| CCAGATGCAGGATCAGGTTC+AGG | 0.381856 | 5.4:-1840161 | None:intergenic |
| CCACGACCTCCTGGAATGTA+TGG | 0.393196 | 5.4:+1840194 | MS.gene000135:CDS |
| CAGAAAAGATTTGTTAATTG+AGG | 0.395744 | 5.4:+1843940 | MS.gene000135:CDS |
| GAACTGGAGGCAGGTCAATA+AGG | 0.395882 | 5.4:+1843510 | MS.gene000135:CDS |
| CCTGCTGGTCAATTTGTTCC+CGG | 0.395933 | 5.4:+1841102 | MS.gene000135:CDS |
| GAAATCAAGGGTTACTTAAA+CGG | 0.402587 | 5.4:+1836966 | MS.gene000135:CDS |
| GCAAAGCCTGTTTCTAGTAA+AGG | 0.404882 | 5.4:+1843630 | MS.gene000135:CDS |
| GGTTTAGCAGTTGTGACGTT+TGG | 0.408014 | 5.4:+1841069 | MS.gene000135:CDS |
| CTATTGCCAATGGCTATTAT+CGG | 0.415076 | 5.4:+1839635 | MS.gene000135:CDS |
| AGGAGGCCTGTGGGAGTGGA+AGG | 0.417365 | 5.4:+1842504 | MS.gene000135:CDS |
| TATTGCCAATGGCTATTATC+GGG | 0.418931 | 5.4:+1839636 | MS.gene000135:CDS |
| TTTGGAAGCATTGGTTCAGT+GGG | 0.421680 | 5.4:+1837237 | MS.gene000135:CDS |
| AGGCAATACAAGCACCAGTA+TGG | 0.423912 | 5.4:-1837296 | None:intergenic |
| ATTATGATCGGATCAACATA+TGG | 0.426037 | 5.4:+1841126 | MS.gene000135:CDS |
| ACATAATTCCCATACATTCC+AGG | 0.427755 | 5.4:-1840203 | None:intergenic |
| CGAAATCATCTTCACAAGAA+AGG | 0.431872 | 5.4:+1839814 | MS.gene000135:CDS |
| CAATCAAAGTTCTGAAAAGA+AGG | 0.433832 | 5.4:-1837110 | None:intergenic |
| GTAACTTGCGGGTGTGCAGC+TGG | 0.434590 | 5.4:+1839143 | MS.gene000135:CDS |
| TCAACATATGGGCGTCTTGT+TGG | 0.437248 | 5.4:+1841138 | MS.gene000135:CDS |
| ATTGAGTGTCCACGACCTCC+TGG | 0.441469 | 5.4:+1840185 | MS.gene000135:CDS |
| GCTTGTATTGCCTCTTTGCT+CGG | 0.447312 | 5.4:+1837306 | MS.gene000135:CDS |
| GCAAACAATACGCCACCAAC+TGG | 0.449386 | 5.4:-1839188 | None:intergenic |
| GCAAAGGAGGCCTGTGGGAG+TGG | 0.450807 | 5.4:+1842500 | MS.gene000135:CDS |
| CTAAGTATCATCTAAATTCA+AGG | 0.451345 | 5.4:+1838934 | MS.gene000135:CDS |
| TTCTGCTATTGTGGCTGTTG+TGG | 0.453788 | 5.4:+1839410 | MS.gene000135:CDS |
| TCACCAGCAGCTGCTGGATC+CGG | 0.455037 | 5.4:+1836936 | MS.gene000135:CDS |
| GCTGTATGTGAGTTACTTGC+TGG | 0.459222 | 5.4:+1835059 | MS.gene000135:CDS |
| TGTTGTGGTGCGAACTGCGA+TGG | 0.459320 | 5.4:+1839425 | MS.gene000135:CDS |
| TTACCCTCTGATCCAAGAAC+TGG | 0.461593 | 5.4:+1843494 | MS.gene000135:CDS |
| TTTGGTACTGCTGTGCCTGC+TGG | 0.463985 | 5.4:+1841087 | MS.gene000135:CDS |
| GTCCTCGATGATGACGGCGT+TGG | 0.474922 | 5.4:+1834822 | MS.gene000135:CDS |
| TTAGGCTTTGAATCTAGTAA+TGG | 0.477532 | 5.4:-1842455 | None:intergenic |
| ACCCTTGATTTCAGGAATAC+CGG | 0.478142 | 5.4:-1836955 | None:intergenic |
| GTTACTTGCTGGTGGTGAAA+TGG | 0.478899 | 5.4:+1835070 | MS.gene000135:CDS |
| GAAATCATCTTCACAAGAAA+GGG | 0.479089 | 5.4:+1839815 | MS.gene000135:CDS |
| CCTGAACCTGATCCTGCATC+TGG | 0.482144 | 5.4:+1840161 | MS.gene000135:CDS |
| TGTTGATCCGATCATAATAC+CGG | 0.483139 | 5.4:-1841121 | None:intergenic |
| TTACACTTTATATTACTACT+TGG | 0.483261 | 5.4:+1839788 | MS.gene000135:CDS |
| GTCTTGAAAAGGTAACTTGC+GGG | 0.483467 | 5.4:+1839132 | MS.gene000135:intron |
| GTTGTGGTGCGAACTGCGAT+GGG | 0.486195 | 5.4:+1839426 | MS.gene000135:CDS |
| GCTATTATCGGGGTTATTGG+AGG | 0.487728 | 5.4:+1839647 | MS.gene000135:CDS |
| GCTCGTTCTTCTTATATCAA+AGG | 0.488398 | 5.4:+1842305 | MS.gene000135:CDS |
| TTACAGGTATTTGGAAGCAT+TGG | 0.491217 | 5.4:+1837228 | MS.gene000135:intron |
| TTAATGTATTCAAAAGTGAC+CGG | 0.491673 | 5.4:+1838961 | MS.gene000135:CDS |
| ATCCGGTATTCCTGAAATCA+AGG | 0.493758 | 5.4:+1836953 | MS.gene000135:CDS |
| GAAGGTCCTCTAGTCCATAC+TGG | 0.493936 | 5.4:+1837282 | MS.gene000135:CDS |
| CAGAAAACTCAACATTGAAG+AGG | 0.495588 | 5.4:+1841182 | MS.gene000135:CDS |
| CGTATTGTTTGCATTGGAAG+AGG | 0.496165 | 5.4:+1839199 | MS.gene000135:CDS |
| CTGCGAGACTCGCTTGGTCA+CGG | 0.502738 | 5.4:+1834772 | MS.gene000135:CDS |
| AAAGGTGATTCATCGGAGTT+CGG | 0.503410 | 5.4:-1834798 | None:intergenic |
| TGTTTCAGGATGATGCCATA+AGG | 0.506436 | 5.4:+1840556 | MS.gene000135:intron |
| TTTCAGAACTTTGATTGGAA+AGG | 0.509394 | 5.4:+1837116 | MS.gene000135:CDS |
| TTTGTTCCCGGTATTATGAT+CGG | 0.509495 | 5.4:+1841114 | MS.gene000135:CDS |
| TTTGTCAGAGACATATCTTC+CGG | 0.512833 | 5.4:-1843744 | None:intergenic |
| GTAAGAATGTAATACCAAAA+AGG | 0.513076 | 5.4:-1840631 | None:intergenic |
| TGTGAATACATTAGAGCTAC+GGG | 0.515257 | 5.4:+1844065 | MS.gene000135:CDS |
| ATCAGGCGGATTCATAATAT+GGG | 0.516900 | 5.4:+1839482 | MS.gene000135:CDS |
| ACATCTAACATCAGAGGACT+TGG | 0.518049 | 5.4:+1843671 | MS.gene000135:CDS |
| TGAAATAACTGATGTTAGAA+GGG | 0.519803 | 5.4:-1840102 | None:intergenic |
| CCATACATTCCAGGAGGTCG+TGG | 0.520085 | 5.4:-1840194 | None:intergenic |
| CTGTCGAATCATATTCAAAA+CGG | 0.522595 | 5.4:+1834741 | MS.gene000135:CDS |
| ATTTGGAAGCATTGGTTCAG+TGG | 0.523234 | 5.4:+1837236 | MS.gene000135:CDS |
| GCATTTAGAGCTCCAGTTGG+TGG | 0.525214 | 5.4:+1839176 | MS.gene000135:CDS |
| TCGAATCTGCGAGACTCGCT+TGG | 0.526282 | 5.4:+1834766 | MS.gene000135:CDS |
| ATGTGAATACATTAGAGCTA+CGG | 0.530337 | 5.4:+1844064 | MS.gene000135:CDS |
| GGAAGCATTGGTTCAGTGGG+GGG | 0.531995 | 5.4:+1837240 | MS.gene000135:CDS |
| TCAATACCAGATGCAGGATC+AGG | 0.533796 | 5.4:-1840167 | None:intergenic |
| AGCTACGGGCAACTAGTGTA+AGG | 0.536837 | 5.4:+1844079 | MS.gene000135:CDS |
| CTGATCCAAGAACTGGAGGC+AGG | 0.537268 | 5.4:+1843501 | MS.gene000135:CDS |
| CAGAGGGTAAAGGACTATGC+TGG | 0.539551 | 5.4:-1843481 | None:intergenic |
| TGGTTCTTTGCATTGCTCAT+CGG | 0.541879 | 5.4:+1835090 | MS.gene000135:CDS |
| TTATTGGATTAGTGCTTCGC+AGG | 0.543197 | 5.4:+1843290 | MS.gene000135:CDS |
| GCAGGATCAGGTTCAGGGCA+TGG | 0.544038 | 5.4:-1840155 | None:intergenic |
| CAGATGCAGGATCAGGTTCA+GGG | 0.547736 | 5.4:-1840160 | None:intergenic |
| TAGTAATATAAAGTGTAAGC+TGG | 0.551188 | 5.4:-1839783 | None:intergenic |
| GCCTCCAGTTCTTGGATCAG+AGG | 0.555424 | 5.4:-1843498 | None:intergenic |
| TCCCTCACCATATATTGTAC+CGG | 0.557305 | 5.4:+1843725 | MS.gene000135:CDS |
| TGGAAGCATTGGTTCAGTGG+GGG | 0.557432 | 5.4:+1837239 | MS.gene000135:CDS |
| CCCTCTGATCCAAGAACTGG+AGG | 0.557723 | 5.4:+1843497 | MS.gene000135:CDS |
| TGGTGGCGTATTGTTTGCAT+TGG | 0.559075 | 5.4:+1839193 | MS.gene000135:CDS |
| ATCCAGAAATCATACGTCGC+TGG | 0.562554 | 5.4:+1836846 | MS.gene000135:CDS |
| CCAAGAACACGTGAAGGACG+AGG | 0.562635 | 5.4:-1843908 | None:intergenic |
| ATACCGGATCCAGCAGCTGC+TGG | 0.567300 | 5.4:-1836939 | None:intergenic |
| TTACAAGATCACGGCGATCC+CGG | 0.572507 | 5.4:-1838980 | None:intergenic |
| ATTCACCCTTCCACTCCCAC+AGG | 0.574638 | 5.4:-1842510 | None:intergenic |
| GTTCTTGGATCAGAGGGTAA+AGG | 0.575169 | 5.4:-1843491 | None:intergenic |
| AGAAGAACGAGCATAATAAG+TGG | 0.575953 | 5.4:-1842294 | None:intergenic |
| GGCCTCGCTTTGGGTAAAGA+AGG | 0.576441 | 5.4:+1837264 | MS.gene000135:CDS |
| CCTCCAGTTCTTGGATCAGA+GGG | 0.579603 | 5.4:-1843497 | None:intergenic |
| CCGGGAACAAATTGACCAGC+AGG | 0.580287 | 5.4:-1841102 | None:intergenic |
| TTCCGGTACAATATATGGTG+AGG | 0.583817 | 5.4:-1843727 | None:intergenic |
| GTTTGCAGAGCTATTGCCAA+TGG | 0.584550 | 5.4:+1839625 | MS.gene000135:CDS |
| CACGACCTCCTGGAATGTAT+GGG | 0.584630 | 5.4:+1840195 | MS.gene000135:CDS |
| TGTTCAGGAGTTGATACTCA+CGG | 0.585374 | 5.4:+1837084 | MS.gene000135:intron |
| GTGATTGATCACACAAGAAG+TGG | 0.585399 | 5.4:+1843256 | MS.gene000135:CDS |
| AATGCCTCAAACCAAGTTGG+CGG | 0.586230 | 5.4:-1843874 | None:intergenic |
| TGGTGTAAGAGTGGAAAATG+TGG | 0.588751 | 5.4:+1839450 | MS.gene000135:CDS |
| GTGTGTGTTGCTCTGCAGAA+TGG | 0.590378 | 5.4:-1843142 | None:intergenic |
| TGGTGCGAACTGCGATGGGG+TGG | 0.591545 | 5.4:+1839430 | MS.gene000135:CDS |
| GGAAGATATGTCTCTGACAA+AGG | 0.592206 | 5.4:+1843746 | MS.gene000135:CDS |
| GGACACTCAATACCAGATGC+AGG | 0.593824 | 5.4:-1840173 | None:intergenic |
| GGAGGCCTGTGGGAGTGGAA+GGG | 0.594441 | 5.4:+1842505 | MS.gene000135:CDS |
| TCCGGTACAATATATGGTGA+GGG | 0.594710 | 5.4:-1843726 | None:intergenic |
| CCGTCATCATCGAGGACGAA+AGG | 0.595112 | 5.4:-1834816 | None:intergenic |
| GGGGTTATTGGAGGTCTACT+AGG | 0.596466 | 5.4:+1839656 | MS.gene000135:CDS |
| GAAGAGCAAGCTCGATTGAG+AGG | 0.597700 | 5.4:+1842428 | MS.gene000135:CDS |
| TTCATAGTCAAGACTCTCAA+CGG | 0.598773 | 5.4:-1834871 | None:intergenic |
| TTATGATCGGATCAACATAT+GGG | 0.602056 | 5.4:+1841127 | MS.gene000135:CDS |
| TAATGTATTCAAAAGTGACC+GGG | 0.606182 | 5.4:+1838962 | MS.gene000135:CDS |
| CTGATGTTAGAAGGGAGACA+AGG | 0.607317 | 5.4:-1840094 | None:intergenic |
| AGAAAACTCAACATTGAAGA+GGG | 0.609693 | 5.4:+1841183 | MS.gene000135:CDS |
| ATAAATGCCTCAAACCAAGT+TGG | 0.611074 | 5.4:-1843877 | None:intergenic |
| CCTTTCGTCCTCGATGATGA+CGG | 0.613284 | 5.4:+1834816 | MS.gene000135:CDS |
| GAGGACGAAAGGTGATTCAT+CGG | 0.613288 | 5.4:-1834805 | None:intergenic |
| ATCAACAATATACCTTGACT+CGG | 0.617829 | 5.4:-1839840 | None:intergenic |
| GTATGTGAGTTACTTGCTGG+TGG | 0.618042 | 5.4:+1835062 | MS.gene000135:CDS |
| ATAACCCCGATAATAGCCAT+TGG | 0.618714 | 5.4:-1839641 | None:intergenic |
| GGGATTCTTAAGAAGAACGA+TGG | 0.624518 | 5.4:+1834843 | MS.gene000135:CDS |
| CCTTACTTGTCCGAGCAAAG+AGG | 0.625961 | 5.4:-1837316 | None:intergenic |
| GACCTTCTTTACCCAAAGCG+AGG | 0.628740 | 5.4:-1837266 | None:intergenic |
| ATGATAGCAAAGGAGGCCTG+TGG | 0.629204 | 5.4:+1842494 | MS.gene000135:CDS |
| TGGGGTGGCTTACAAGATCA+CGG | 0.630966 | 5.4:-1838989 | None:intergenic |
| TCCGGTATTCCTGAAATCAA+GGG | 0.633331 | 5.4:+1836954 | MS.gene000135:CDS |
| AGCACTAATCCAATAACAAG+TGG | 0.633552 | 5.4:-1843283 | None:intergenic |
| TTGTGTGATGATATATACAG+AGG | 0.634314 | 5.4:-1836910 | None:intergenic |
| CAAGAAAGGGAACCGAGTCA+AGG | 0.635298 | 5.4:+1839828 | MS.gene000135:CDS |
| TGATAGCAAAGGAGGCCTGT+GGG | 0.636416 | 5.4:+1842495 | MS.gene000135:CDS |
| CAAGCACCAGTATGGACTAG+AGG | 0.639389 | 5.4:-1837288 | None:intergenic |
| GGTGGAGGAGTCAACTAATG+TGG | 0.640885 | 5.4:+1839373 | MS.gene000135:intron |
| GCTGCATTTAGAGCTCCAGT+TGG | 0.643756 | 5.4:+1839173 | MS.gene000135:CDS |
| GATGCGGAATATGATAGCAA+AGG | 0.644021 | 5.4:+1842484 | MS.gene000135:CDS |
| GCGGAATATGATAGCAAAGG+AGG | 0.644443 | 5.4:+1842487 | MS.gene000135:CDS |
| CAAAGCCTAAATATGAGATG+CGG | 0.646071 | 5.4:+1842468 | MS.gene000135:CDS |
| ATCAAGCCAAGAACACGTGA+AGG | 0.649056 | 5.4:-1843914 | None:intergenic |
| TTGGAAGCATTGGTTCAGTG+GGG | 0.650300 | 5.4:+1837238 | MS.gene000135:CDS |
| GCGATGGGGTGGTGTAAGAG+TGG | 0.651229 | 5.4:+1839441 | MS.gene000135:CDS |
| CGATATACATCTAACATCAG+AGG | 0.653791 | 5.4:+1843665 | MS.gene000135:CDS |
| ATTGCCAATGGCTATTATCG+GGG | 0.656922 | 5.4:+1839637 | MS.gene000135:CDS |
| CTGCAGAGCAACACACACAA+CGG | 0.660953 | 5.4:+1843147 | MS.gene000135:CDS |
| GTTGATCCGATCATAATACC+GGG | 0.676981 | 5.4:-1841120 | None:intergenic |
| AGTATCATCTAAATTCAAGG+TGG | 0.691464 | 5.4:+1838937 | MS.gene000135:CDS |
| TTGTGGTGCGAACTGCGATG+GGG | 0.698177 | 5.4:+1839427 | MS.gene000135:CDS |
| TCTGAAACCTTAACAACACG+AGG | 0.705920 | 5.4:-1843111 | None:intergenic |
| TCCCAACGCCGTCATCATCG+AGG | 0.707360 | 5.4:-1834824 | None:intergenic |
| TGTCTTGAAAAGGTAACTTG+CGG | 0.722899 | 5.4:+1839131 | MS.gene000135:intron |
| TAATTCCCATACATTCCAGG+AGG | 0.734958 | 5.4:-1840200 | None:intergenic |
| CATTGGAAGAGGTTACATCG+TGG | 0.744919 | 5.4:+1839210 | MS.gene000135:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 1834738 | 1844113 | 1834738 | ID=MS.gene000135 |
| chr5.4 | mRNA | 1834738 | 1844113 | 1834738 | ID=MS.gene000135.t1;Parent=MS.gene000135 |
| chr5.4 | exon | 1834738 | 1834926 | 1834738 | ID=MS.gene000135.t1.exon1;Parent=MS.gene000135.t1 |
| chr5.4 | CDS | 1834738 | 1834926 | 1834738 | ID=cds.MS.gene000135.t1;Parent=MS.gene000135.t1 |
| chr5.4 | exon | 1835042 | 1835117 | 1835042 | ID=MS.gene000135.t1.exon2;Parent=MS.gene000135.t1 |
| chr5.4 | CDS | 1835042 | 1835117 | 1835042 | ID=cds.MS.gene000135.t1;Parent=MS.gene000135.t1 |
| chr5.4 | exon | 1836766 | 1836987 | 1836766 | ID=MS.gene000135.t1.exon3;Parent=MS.gene000135.t1 |
| chr5.4 | CDS | 1836766 | 1836987 | 1836766 | ID=cds.MS.gene000135.t1;Parent=MS.gene000135.t1 |
| chr5.4 | exon | 1837091 | 1837137 | 1837091 | ID=MS.gene000135.t1.exon4;Parent=MS.gene000135.t1 |
| chr5.4 | CDS | 1837091 | 1837137 | 1837091 | ID=cds.MS.gene000135.t1;Parent=MS.gene000135.t1 |
| chr5.4 | exon | 1837234 | 1837332 | 1837234 | ID=MS.gene000135.t1.exon5;Parent=MS.gene000135.t1 |
| chr5.4 | CDS | 1837234 | 1837332 | 1837234 | ID=cds.MS.gene000135.t1;Parent=MS.gene000135.t1 |
| chr5.4 | exon | 1838924 | 1838998 | 1838924 | ID=MS.gene000135.t1.exon6;Parent=MS.gene000135.t1 |
| chr5.4 | CDS | 1838924 | 1838998 | 1838924 | ID=cds.MS.gene000135.t1;Parent=MS.gene000135.t1 |
| chr5.4 | exon | 1839143 | 1839231 | 1839143 | ID=MS.gene000135.t1.exon7;Parent=MS.gene000135.t1 |
| chr5.4 | CDS | 1839143 | 1839231 | 1839143 | ID=cds.MS.gene000135.t1;Parent=MS.gene000135.t1 |
| chr5.4 | exon | 1839374 | 1839514 | 1839374 | ID=MS.gene000135.t1.exon8;Parent=MS.gene000135.t1 |
| chr5.4 | CDS | 1839374 | 1839514 | 1839374 | ID=cds.MS.gene000135.t1;Parent=MS.gene000135.t1 |
| chr5.4 | exon | 1839607 | 1839677 | 1839607 | ID=MS.gene000135.t1.exon9;Parent=MS.gene000135.t1 |
| chr5.4 | CDS | 1839607 | 1839677 | 1839607 | ID=cds.MS.gene000135.t1;Parent=MS.gene000135.t1 |
| chr5.4 | exon | 1839770 | 1839849 | 1839770 | ID=MS.gene000135.t1.exon10;Parent=MS.gene000135.t1 |
| chr5.4 | CDS | 1839770 | 1839849 | 1839770 | ID=cds.MS.gene000135.t1;Parent=MS.gene000135.t1 |
| chr5.4 | exon | 1840080 | 1840229 | 1840080 | ID=MS.gene000135.t1.exon11;Parent=MS.gene000135.t1 |
| chr5.4 | CDS | 1840080 | 1840229 | 1840080 | ID=cds.MS.gene000135.t1;Parent=MS.gene000135.t1 |
| chr5.4 | exon | 1840420 | 1840479 | 1840420 | ID=MS.gene000135.t1.exon12;Parent=MS.gene000135.t1 |
| chr5.4 | CDS | 1840420 | 1840479 | 1840420 | ID=cds.MS.gene000135.t1;Parent=MS.gene000135.t1 |
| chr5.4 | exon | 1840564 | 1840638 | 1840564 | ID=MS.gene000135.t1.exon13;Parent=MS.gene000135.t1 |
| chr5.4 | CDS | 1840564 | 1840638 | 1840564 | ID=cds.MS.gene000135.t1;Parent=MS.gene000135.t1 |
| chr5.4 | exon | 1841057 | 1841208 | 1841057 | ID=MS.gene000135.t1.exon14;Parent=MS.gene000135.t1 |
| chr5.4 | CDS | 1841057 | 1841208 | 1841057 | ID=cds.MS.gene000135.t1;Parent=MS.gene000135.t1 |
| chr5.4 | exon | 1842191 | 1842326 | 1842191 | ID=MS.gene000135.t1.exon15;Parent=MS.gene000135.t1 |
| chr5.4 | CDS | 1842191 | 1842326 | 1842191 | ID=cds.MS.gene000135.t1;Parent=MS.gene000135.t1 |
| chr5.4 | exon | 1842395 | 1842526 | 1842395 | ID=MS.gene000135.t1.exon16;Parent=MS.gene000135.t1 |
| chr5.4 | CDS | 1842395 | 1842526 | 1842395 | ID=cds.MS.gene000135.t1;Parent=MS.gene000135.t1 |
| chr5.4 | exon | 1843099 | 1843176 | 1843099 | ID=MS.gene000135.t1.exon17;Parent=MS.gene000135.t1 |
| chr5.4 | CDS | 1843099 | 1843176 | 1843099 | ID=cds.MS.gene000135.t1;Parent=MS.gene000135.t1 |
| chr5.4 | exon | 1843256 | 1843311 | 1843256 | ID=MS.gene000135.t1.exon18;Parent=MS.gene000135.t1 |
| chr5.4 | CDS | 1843256 | 1843311 | 1843256 | ID=cds.MS.gene000135.t1;Parent=MS.gene000135.t1 |
| chr5.4 | exon | 1843445 | 1843531 | 1843445 | ID=MS.gene000135.t1.exon19;Parent=MS.gene000135.t1 |
| chr5.4 | CDS | 1843445 | 1843531 | 1843445 | ID=cds.MS.gene000135.t1;Parent=MS.gene000135.t1 |
| chr5.4 | exon | 1843611 | 1843767 | 1843611 | ID=MS.gene000135.t1.exon20;Parent=MS.gene000135.t1 |
| chr5.4 | CDS | 1843611 | 1843767 | 1843611 | ID=cds.MS.gene000135.t1;Parent=MS.gene000135.t1 |
| chr5.4 | exon | 1843860 | 1843961 | 1843860 | ID=MS.gene000135.t1.exon21;Parent=MS.gene000135.t1 |
| chr5.4 | CDS | 1843860 | 1843961 | 1843860 | ID=cds.MS.gene000135.t1;Parent=MS.gene000135.t1 |
| chr5.4 | exon | 1844054 | 1844113 | 1844054 | ID=MS.gene000135.t1.exon22;Parent=MS.gene000135.t1 |
| chr5.4 | CDS | 1844054 | 1844113 | 1844054 | ID=cds.MS.gene000135.t1;Parent=MS.gene000135.t1 |
| Gene Sequence |
| Protein sequence |
