AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene000171

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene000171.t1 MTR_1g067370 99.544 439 2 0 1 439 1 439 0.0 893
MS.gene000171.t1 MTR_7g100360 84.634 423 58 2 24 439 22 444 0.0 679
MS.gene000171.t1 MTR_3g080830 54.545 418 182 5 26 439 24 437 2.28e-158 454
MS.gene000171.t1 MTR_1g025450 55.034 149 66 1 26 173 301 449 1.29e-38 147
MS.gene000171.t1 MTR_1g061930 39.669 121 70 3 321 438 1 121 2.59e-21 90.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene000171.t1 AT5G18520 76.244 442 100 3 1 439 1 440 0.0 687
MS.gene000171.t1 AT3G09570 77.830 424 91 2 19 439 16 439 0.0 663
MS.gene000171.t1 AT5G02630 61.343 432 160 4 4 433 2 428 0.0 534
MS.gene000171.t1 AT5G42090 54.808 416 185 2 27 439 24 439 1.98e-164 470

Find 114 sgRNAs with CRISPR-Local

Find 138 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTCTCCCTTTCTTGCAAAA+AGG 0.204422 1.1:+49545678 None:intergenic
TATGATTGTTATTCCTCTTC+AGG 0.246602 1.1:-49545647 MS.gene000171:CDS
TGTTATTCCTCTTCAGGTTT+TGG 0.265822 1.1:-49545641 MS.gene000171:CDS
GTAACCCAATCCTTGATAAA+AGG 0.306429 1.1:+49545583 None:intergenic
ATGATCCTCTTAGAGAAATT+CGG 0.313606 1.1:-49546372 MS.gene000171:CDS
GCAACACGACACGGATAAAC+TGG 0.334981 1.1:+49545749 None:intergenic
AATTTAGCTTCCGTTGTAAT+CGG 0.341534 1.1:-49545616 MS.gene000171:CDS
TTTGATCTCAGCCGTTGATT+GGG 0.345915 1.1:+49546425 None:intergenic
ATTTGATCTCAGCCGTTGAT+TGG 0.359823 1.1:+49546424 None:intergenic
GACGGTGGTGATCACCGTTT+TGG 0.361569 1.1:+49546485 None:intergenic
GGATTGGGTTACTTGGAATC+AGG 0.378170 1.1:-49545572 MS.gene000171:CDS
TCCGTTGTAATCGGCGAAAC+TGG 0.378237 1.1:-49545607 MS.gene000171:CDS
TTATCAAGGATTGGGTTACT+TGG 0.387701 1.1:-49545579 MS.gene000171:CDS
TGATCCTCTTAGAGAAATTC+GGG 0.400373 1.1:-49546371 MS.gene000171:CDS
GAAGCGATTCTTCGCTTAAG+AGG 0.412419 1.1:+49546256 None:intergenic
GCCATGGAAACGGAGGTTTC+CGG 0.427556 1.1:+49546060 None:intergenic
GTCATTGTATTGATCGGAAC+TGG 0.430766 1.1:-49545718 MS.gene000171:CDS
GAACTCATTCGGAGAAGTTA+CGG 0.433751 1.1:+49546107 None:intergenic
CTCTTCTCCGTCGTGTACTT+CGG 0.437135 1.1:-49545952 MS.gene000171:CDS
AACTCATTCGGAGAAGTTAC+GGG 0.446315 1.1:+49546108 None:intergenic
AAGCTGCGGAGGTTGCTCTC+AGG 0.452635 1.1:-49545213 MS.gene000171:CDS
CCATTACTGCTTATAAGTAT+AGG 0.453867 1.1:-49545351 MS.gene000171:CDS
AGACGGAGGAAACGGCGATC+TGG 0.455414 1.1:+49546328 None:intergenic
AGCGACGGAGACGGAGGAAA+CGG 0.456624 1.1:+49546320 None:intergenic
GAGGATCATGGGTCGGGTAT+CGG 0.458332 1.1:+49546386 None:intergenic
GATTTAATCGACCATACAAT+AGG 0.463888 1.1:+49545505 None:intergenic
TTTGCAAGAAAGGGAGAAGA+AGG 0.467752 1.1:-49545674 MS.gene000171:CDS
TATGGTCGATTAAATCGCTT+AGG 0.480587 1.1:-49545498 MS.gene000171:CDS
GATCTGGATGTGGCCGGTGT+GGG 0.484944 1.1:+49546344 None:intergenic
AAGAAGAGACTGAACTCATT+CGG 0.487216 1.1:+49546096 None:intergenic
CTCTAAGAGGATCATGGGTC+GGG 0.488515 1.1:+49546380 None:intergenic
ATAACAAACGCTCCGTTCAC+CGG 0.489572 1.1:-49545897 MS.gene000171:CDS
TTGATCTCAGCCGTTGATTG+GGG 0.493890 1.1:+49546426 None:intergenic
GAATTTCTCTAAGAGGATCA+TGG 0.499199 1.1:+49546374 None:intergenic
AGCTGCGGAGGTTGCTCTCA+GGG 0.500321 1.1:-49545212 MS.gene000171:CDS
ATCCCATCCATGTGGAGTAC+CGG 0.501308 1.1:+49545789 None:intergenic
CCTATACTTATAAGCAGTAA+TGG 0.502591 1.1:+49545351 None:intergenic
TTGTGTTGCGGCGGCAGCGA+CGG 0.505110 1.1:+49546305 None:intergenic
TTCACCGTCATTGTATTGAT+CGG 0.507639 1.1:-49545724 MS.gene000171:CDS
GGTTAGCAATCTTGCTGAGG+AGG 0.512540 1.1:-49545326 MS.gene000171:CDS
GAATCGAGAACGCAGAAGCT+AGG 0.512869 1.1:+49546204 None:intergenic
AATCCGAGACGAGATGGATC+GGG 0.515601 1.1:+49546282 None:intergenic
GGTACGAACCGCCATGGAAA+CGG 0.516857 1.1:+49546050 None:intergenic
GAATCCGAGACGAGATGGAT+CGG 0.518346 1.1:+49546281 None:intergenic
CCGCCATGAGGAGATGGATC+CGG 0.520442 1.1:+49545878 None:intergenic
GAACGGTTAAACGCCGCAGT+TGG 0.520553 1.1:+49546135 None:intergenic
CGATCTGGATGTGGCCGGTG+TGG 0.527010 1.1:+49546343 None:intergenic
ACCGGAAACCTCCGTTTCCA+TGG 0.528671 1.1:-49546061 MS.gene000171:CDS
TCACCGGTACTCCACATGGA+TGG 0.539403 1.1:-49545792 MS.gene000171:CDS
CGGTTAAACGCCGCAGTTGG+AGG 0.540690 1.1:+49546138 None:intergenic
AGGAAGAATCCGAGACGAGA+TGG 0.541758 1.1:+49546276 None:intergenic
TCTCTAAGAGGATCATGGGT+CGG 0.545583 1.1:+49546379 None:intergenic
AGGAAACGGCGATCTGGATG+TGG 0.546544 1.1:+49546334 None:intergenic
GAGAAGTTACGGGGTAAGAA+CGG 0.552674 1.1:+49546118 None:intergenic
GTCCGTGATTATCTTTCCGC+CGG 0.554079 1.1:-49546003 MS.gene000171:CDS
GAAGTGCCGCCATGAGGAGA+TGG 0.555399 1.1:+49545872 None:intergenic
TGAACCCGAATTTCTCTAAG+AGG 0.557990 1.1:+49546367 None:intergenic
TTAAACGCCGCAGTTGGAGG+TGG 0.561889 1.1:+49546141 None:intergenic
GGCATCGAGGTTGAAAAGCT+CGG 0.563320 1.1:+49546029 None:intergenic
ATGGTCGATTAAATCGCTTA+GGG 0.564486 1.1:-49545497 MS.gene000171:CDS
CACCGGTACTCCACATGGAT+GGG 0.565762 1.1:-49545791 MS.gene000171:CDS
AAATTCGCCAAAACCTGAAG+AGG 0.566176 1.1:+49545634 None:intergenic
AAATACTCATTCTTCTCCAC+CGG 0.566222 1.1:+49545259 None:intergenic
TTACTGCTTATAAGTATAGG+TGG 0.566517 1.1:-49545348 MS.gene000171:CDS
AGATGGATCGGGTTGTGTTG+CGG 0.567742 1.1:+49546293 None:intergenic
AAACATTATGTCAAGGTCAC+CGG 0.568178 1.1:-49545808 MS.gene000171:CDS
CTTGACATAATGTTTATCCT+CGG 0.571094 1.1:+49545816 None:intergenic
CGGTGAAAAGCAACACGACA+CGG 0.571831 1.1:+49545740 None:intergenic
AATCGAGAACGCAGAAGCTA+GGG 0.571969 1.1:+49546205 None:intergenic
GGAAAGATAATCACGGACTC+CGG 0.572809 1.1:+49546008 None:intergenic
GAGGAGATGGATCCGGTGAA+CGG 0.573260 1.1:+49545885 None:intergenic
GGAGGAAGAAGAAGCTGCGG+AGG 0.577819 1.1:-49545224 MS.gene000171:CDS
AGACGGTAACTGAGTTTGAC+CGG 0.579031 1.1:+49545984 None:intergenic
TAACTTGATTTGCGCCGCCG+AGG 0.580116 1.1:-49545833 MS.gene000171:CDS
AATTTCTCTAAGAGGATCAT+GGG 0.580478 1.1:+49546375 None:intergenic
TCACCGGATCCATCTCCTCA+TGG 0.581328 1.1:-49545881 MS.gene000171:CDS
AGACCGATGGAAAAGCTGCT+AGG 0.583599 1.1:-49545465 MS.gene000171:CDS
GTTAGCAATCTTGCTGAGGA+GGG 0.583606 1.1:-49545325 MS.gene000171:CDS
ACCAGTTTCGCCGATTACAA+CGG 0.586450 1.1:+49545606 None:intergenic
CTTCTTCGCTAACTGTGCAC+CGG 0.590271 1.1:-49546079 MS.gene000171:CDS
GATCATGGGTCGGGTATCGG+AGG 0.594584 1.1:+49546389 None:intergenic
AAGCTCGGTACGAACCGCCA+TGG 0.596283 1.1:+49546044 None:intergenic
AACGGCGATCTGGATGTGGC+CGG 0.598066 1.1:+49546338 None:intergenic
TGCGGCGGCAGCGACGGAGA+CGG 0.602908 1.1:+49546311 None:intergenic
TACTGCTTATAAGTATAGGT+GGG 0.603318 1.1:-49545347 MS.gene000171:CDS
GGTATCGGAGGTTATTGTGA+GGG 0.605524 1.1:+49546401 None:intergenic
TTGGAGGTGGTGAAAGATCA+CGG 0.606308 1.1:+49546154 None:intergenic
AAGGTCACCGGTACTCCACA+TGG 0.613539 1.1:-49545796 MS.gene000171:CDS
TGATCTCAGCCGTTGATTGG+GGG 0.614677 1.1:+49546427 None:intergenic
TTGTATTGATCGGAACTGGA+TGG 0.615956 1.1:-49545714 MS.gene000171:CDS
CGAGGATAAACATTATGTCA+AGG 0.627926 1.1:-49545815 MS.gene000171:CDS
GGCGGCAGCGACGGAGACGG+AGG 0.628686 1.1:+49546314 None:intergenic
TGAGGAGGAAGAAGAAGCTG+CGG 0.630700 1.1:-49545227 MS.gene000171:CDS
CAACCCGATCCATCTCGTCT+CGG 0.633761 1.1:-49546285 MS.gene000171:CDS
AGGGAAACCTCAAAGACCGA+TGG 0.641237 1.1:-49545478 MS.gene000171:CDS
GACATAATGTTTATCCTCGG+CGG 0.647292 1.1:+49545819 None:intergenic
TGGATCGGGTTGTGTTGCGG+CGG 0.650087 1.1:+49546296 None:intergenic
TCTTTCACCACCTCCAACTG+CGG 0.654408 1.1:-49546148 MS.gene000171:CDS
TCAACAGAAGTGCCGCCATG+AGG 0.664003 1.1:+49545866 None:intergenic
AATCACGGACTCCGGCATCG+AGG 0.665196 1.1:+49546016 None:intergenic
GGGTATCGGAGGTTATTGTG+AGG 0.669465 1.1:+49546400 None:intergenic
GTGGGTTAGCAATCTTGCTG+AGG 0.670293 1.1:-49545329 MS.gene000171:CDS
GGAAACCTCCGTTTCCATGG+CGG 0.672147 1.1:-49546058 MS.gene000171:CDS
AGTTCCGATCAATACAATGA+CGG 0.676682 1.1:+49545720 None:intergenic
AAATTCGGGTTCACCCACAC+CGG 0.680372 1.1:-49546357 MS.gene000171:CDS
AAGAGAACATCCCATCCATG+TGG 0.690008 1.1:+49545781 None:intergenic
GACCGGCGGAAAGATAATCA+CGG 0.713828 1.1:+49546001 None:intergenic
ACGAACCGCCATGGAAACGG+AGG 0.722339 1.1:+49546053 None:intergenic
ACTCATTCGGAGAAGTTACG+GGG 0.726459 1.1:+49546109 None:intergenic
GAGAAAACCGAAGTACACGA+CGG 0.734771 1.1:+49545945 None:intergenic
CCGGATCCATCTCCTCATGG+CGG 0.735489 1.1:-49545878 MS.gene000171:CDS
GATTGTGATGAGTGAAACGA+CGG 0.759491 1.1:+49546467 None:intergenic
CGGTAACTGAGTTTGACCGG+CGG 0.781047 1.1:+49545987 None:intergenic
TGTGATGAGTGAAACGACGG+TGG 0.807665 1.1:+49546470 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! CAATCATTTTTCCTATTGTA+TGG - chr1.1:49546165-49546184 MS.gene000171:CDS 25.0%
!!! CAGTTTTACATTGTTGTTAT+CGG - chr1.1:49546266-49546285 MS.gene000171:CDS 25.0%
ATGATCCTCTTAGAGAAATT+CGG - chr1.1:49545309-49545328 MS.gene000171:CDS 30.0%
CCATTACTGCTTATAAGTAT+AGG - chr1.1:49546330-49546349 MS.gene000171:CDS 30.0%
CCTATACTTATAAGCAGTAA+TGG + chr1.1:49546333-49546352 None:intergenic 30.0%
CTTGACATAATGTTTATCCT+CGG + chr1.1:49545868-49545887 None:intergenic 30.0%
GATTTAATCGACCATACAAT+AGG + chr1.1:49546179-49546198 None:intergenic 30.0%
TACTGCTTATAAGTATAGGT+GGG - chr1.1:49546334-49546353 MS.gene000171:CDS 30.0%
TTACTGCTTATAAGTATAGG+TGG - chr1.1:49546333-49546352 MS.gene000171:CDS 30.0%
! AATTTAGCTTCCGTTGTAAT+CGG - chr1.1:49546065-49546084 MS.gene000171:CDS 30.0%
! AATTTCTCTAAGAGGATCAT+GGG + chr1.1:49545309-49545328 None:intergenic 30.0%
! CATGTTTTACATGTTTATGC+CGG - chr1.1:49546403-49546422 MS.gene000171:CDS 30.0%
! TATGATTGTTATTCCTCTTC+AGG - chr1.1:49546034-49546053 MS.gene000171:CDS 30.0%
AAACATTATGTCAAGGTCAC+CGG - chr1.1:49545873-49545892 MS.gene000171:CDS 35.0%
AAATACTCATTCTTCTCCAC+CGG + chr1.1:49546425-49546444 None:intergenic 35.0%
AAGAAGAGACTGAACTCATT+CGG + chr1.1:49545588-49545607 None:intergenic 35.0%
AGTTCCGATCAATACAATGA+CGG + chr1.1:49545964-49545983 None:intergenic 35.0%
ATGGTCGATTAAATCGCTTA+GGG - chr1.1:49546184-49546203 MS.gene000171:CDS 35.0%
CGAGGATAAACATTATGTCA+AGG - chr1.1:49545866-49545885 MS.gene000171:CDS 35.0%
GAGAAGAGAAAAAACAGAGA+CGG + chr1.1:49545717-49545736 None:intergenic 35.0%
GTAACCCAATCCTTGATAAA+AGG + chr1.1:49546101-49546120 None:intergenic 35.0%
TATGGTCGATTAAATCGCTT+AGG - chr1.1:49546183-49546202 MS.gene000171:CDS 35.0%
TGATCCTCTTAGAGAAATTC+GGG - chr1.1:49545310-49545329 MS.gene000171:CDS 35.0%
TTATCAAGGATTGGGTTACT+TGG - chr1.1:49546102-49546121 MS.gene000171:CDS 35.0%
TTCTCCCTTTCTTGCAAAAA+GGG + chr1.1:49546005-49546024 None:intergenic 35.0%
! GAATTTCTCTAAGAGGATCA+TGG + chr1.1:49545310-49545329 None:intergenic 35.0%
! TGAGTATTTTGTGCTTGATG+AGG - chr1.1:49546436-49546455 MS.gene000171:CDS 35.0%
! TGGTCCTTTTATCAAGGATT+GGG - chr1.1:49546094-49546113 MS.gene000171:CDS 35.0%
! TTCACCGTCATTGTATTGAT+CGG - chr1.1:49545957-49545976 MS.gene000171:CDS 35.0%
!! TCGCGAAGTTAACACTTTTT+AGG - chr1.1:49546243-49546262 MS.gene000171:CDS 35.0%
!! TGTTATTCCTCTTCAGGTTT+TGG - chr1.1:49546040-49546059 MS.gene000171:CDS 35.0%
AAATTCGCCAAAACCTGAAG+AGG + chr1.1:49546050-49546069 None:intergenic 40.0%
AACTCATTCGGAGAAGTTAC+GGG + chr1.1:49545576-49545595 None:intergenic 40.0%
ATTTGATCTCAGCCGTTGAT+TGG + chr1.1:49545260-49545279 None:intergenic 40.0%
CTTCTCCCTTTCTTGCAAAA+AGG + chr1.1:49546006-49546025 None:intergenic 40.0%
GAACTCATTCGGAGAAGTTA+CGG + chr1.1:49545577-49545596 None:intergenic 40.0%
GACATAATGTTTATCCTCGG+CGG + chr1.1:49545865-49545884 None:intergenic 40.0%
GATTGTGATGAGTGAAACGA+CGG + chr1.1:49545217-49545236 None:intergenic 40.0%
TGAACCCGAATTTCTCTAAG+AGG + chr1.1:49545317-49545336 None:intergenic 40.0%
TTTGCAAGAAAGGGAGAAGA+AGG - chr1.1:49546007-49546026 MS.gene000171:CDS 40.0%
! ATTCCTAGCAGCTTTTCCAT+CGG + chr1.1:49546222-49546241 None:intergenic 40.0%
! CGAAACTGGTCCTTTTATCA+AGG - chr1.1:49546088-49546107 MS.gene000171:CDS 40.0%
! CTGGTCCTTTTATCAAGGAT+TGG - chr1.1:49546093-49546112 MS.gene000171:CDS 40.0%
! GAAGCCCTTTTTGCAAGAAA+GGG - chr1.1:49545998-49546017 MS.gene000171:CDS 40.0%
! GTATTTTGTGCTTGATGAGG+AGG - chr1.1:49546439-49546458 MS.gene000171:CDS 40.0%
! GTCATTGTATTGATCGGAAC+TGG - chr1.1:49545963-49545982 MS.gene000171:CDS 40.0%
! GTTTTACATGTTTATGCCGG+TGG - chr1.1:49546406-49546425 MS.gene000171:CDS 40.0%
! TGAAGCCCTTTTTGCAAGAA+AGG - chr1.1:49545997-49546016 MS.gene000171:CDS 40.0%
! TTGTATTGATCGGAACTGGA+TGG - chr1.1:49545967-49545986 MS.gene000171:CDS 40.0%
! TTTGATCTCAGCCGTTGATT+GGG + chr1.1:49545259-49545278 None:intergenic 40.0%
AAGAGAACATCCCATCCATG+TGG + chr1.1:49545903-49545922 None:intergenic 45.0%
AATCGAGAACGCAGAAGCTA+GGG + chr1.1:49545479-49545498 None:intergenic 45.0%
ACTCATTCGGAGAAGTTACG+GGG + chr1.1:49545575-49545594 None:intergenic 45.0%
AGACGGTAACTGAGTTTGAC+CGG + chr1.1:49545700-49545719 None:intergenic 45.0%
ATAACAAACGCTCCGTTCAC+CGG - chr1.1:49545784-49545803 MS.gene000171:CDS 45.0%
CACAACAATCCCCCAATCAA+CGG - chr1.1:49545245-49545264 MS.gene000171:CDS 45.0%
GAAGCGATTCTTCGCTTAAG+AGG + chr1.1:49545428-49545447 None:intergenic 45.0%
GAGAAAACCGAAGTACACGA+CGG + chr1.1:49545739-49545758 None:intergenic 45.0%
GAGAAGTTACGGGGTAAGAA+CGG + chr1.1:49545566-49545585 None:intergenic 45.0%
GGAAAGATAATCACGGACTC+CGG + chr1.1:49545676-49545695 None:intergenic 45.0%
GGATTGGGTTACTTGGAATC+AGG - chr1.1:49546109-49546128 MS.gene000171:CDS 45.0%
GTTAGCAATCTTGCTGAGGA+GGG - chr1.1:49546356-49546375 MS.gene000171:CDS 45.0%
TTGATTGGGGGATTGTTGTG+AGG + chr1.1:49545245-49545264 None:intergenic 45.0%
TTGGAGGTGGTGAAAGATCA+CGG + chr1.1:49545530-49545549 None:intergenic 45.0%
! ACCAGTTTCGCCGATTACAA+CGG + chr1.1:49546078-49546097 None:intergenic 45.0%
! AGCTTTTCCATCGGTCTTTG+AGG + chr1.1:49546213-49546232 None:intergenic 45.0%
! GGTATCGGAGGTTATTGTGA+GGG + chr1.1:49545283-49545302 None:intergenic 45.0%
! GTCGTGTACTTCGGTTTTCT+CGG - chr1.1:49545738-49545757 MS.gene000171:CDS 45.0%
! TCTCTAAGAGGATCATGGGT+CGG + chr1.1:49545305-49545324 None:intergenic 45.0%
! TTGATCTCAGCCGTTGATTG+GGG + chr1.1:49545258-49545277 None:intergenic 45.0%
!!! ACTTCGGTTTTCTCGGTGTT+TGG - chr1.1:49545745-49545764 MS.gene000171:CDS 45.0%
!!! GGTTTTGTTGGATCTCGATG+AGG + chr1.1:49545458-49545477 None:intergenic 45.0%
AATCCGAGACGAGATGGATC+GGG + chr1.1:49545402-49545421 None:intergenic 50.0%
AGACCGATGGAAAAGCTGCT+AGG - chr1.1:49546216-49546235 MS.gene000171:CDS 50.0%
AGGAAGAATCCGAGACGAGA+TGG + chr1.1:49545408-49545427 None:intergenic 50.0%
AGGGAAACCTCAAAGACCGA+TGG - chr1.1:49546203-49546222 MS.gene000171:CDS 50.0%
ATCCCATCCATGTGGAGTAC+CGG + chr1.1:49545895-49545914 None:intergenic 50.0%
CGGTGAAAAGCAACACGACA+CGG + chr1.1:49545944-49545963 None:intergenic 50.0%
CTCTTCTCCGTCGTGTACTT+CGG - chr1.1:49545729-49545748 MS.gene000171:CDS 50.0%
CTTCTTCGCTAACTGTGCAC+CGG - chr1.1:49545602-49545621 MS.gene000171:CDS 50.0%
GAATCCGAGACGAGATGGAT+CGG + chr1.1:49545403-49545422 None:intergenic 50.0%
GAATCGAGAACGCAGAAGCT+AGG + chr1.1:49545480-49545499 None:intergenic 50.0%
GACCGGCGGAAAGATAATCA+CGG + chr1.1:49545683-49545702 None:intergenic 50.0%
GCAACACGACACGGATAAAC+TGG + chr1.1:49545935-49545954 None:intergenic 50.0%
GGTTAGCAATCTTGCTGAGG+AGG - chr1.1:49546355-49546374 MS.gene000171:CDS 50.0%
GTCCGTGATTATCTTTCCGC+CGG - chr1.1:49545678-49545697 MS.gene000171:CDS 50.0%
TCCGTTGTAATCGGCGAAAC+TGG - chr1.1:49546074-49546093 MS.gene000171:CDS 50.0%
TCTTTCACCACCTCCAACTG+CGG - chr1.1:49545533-49545552 MS.gene000171:CDS 50.0%
TGAGGAGGAAGAAGAAGCTG+CGG - chr1.1:49546454-49546473 MS.gene000171:CDS 50.0%
TGTGATGAGTGAAACGACGG+TGG + chr1.1:49545214-49545233 None:intergenic 50.0%
! AAATTCGGGTTCACCCACAC+CGG - chr1.1:49545324-49545343 MS.gene000171:CDS 50.0%
! AGATGGATCGGGTTGTGTTG+CGG + chr1.1:49545391-49545410 None:intergenic 50.0%
! CTCTAAGAGGATCATGGGTC+GGG + chr1.1:49545304-49545323 None:intergenic 50.0%
! GAGCTTTTCAACCTCGATGC+CGG - chr1.1:49545654-49545673 MS.gene000171:CDS 50.0%
! GGCATCGAGGTTGAAAAGCT+CGG + chr1.1:49545655-49545674 None:intergenic 50.0%
! TGATCTCAGCCGTTGATTGG+GGG + chr1.1:49545257-49545276 None:intergenic 50.0%
!! CGCAGAAGCTAGGGTTTTGT+TGG + chr1.1:49545470-49545489 None:intergenic 50.0%
!! GGGTATCGGAGGTTATTGTG+AGG + chr1.1:49545284-49545303 None:intergenic 50.0%
!! GTGGGTTAGCAATCTTGCTG+AGG - chr1.1:49546352-49546371 MS.gene000171:CDS 50.0%
AAGGTCACCGGTACTCCACA+TGG - chr1.1:49545885-49545904 MS.gene000171:CDS 55.0%
ACCGGAAACCTCCGTTTCCA+TGG - chr1.1:49545620-49545639 MS.gene000171:CDS 55.0%
AGGAAACGGCGATCTGGATG+TGG + chr1.1:49545350-49545369 None:intergenic 55.0%
CAACCCGATCCATCTCGTCT+CGG - chr1.1:49545396-49545415 MS.gene000171:CDS 55.0%
CACCGGTACTCCACATGGAT+GGG - chr1.1:49545890-49545909 MS.gene000171:CDS 55.0%
CGGTAACTGAGTTTGACCGG+CGG + chr1.1:49545697-49545716 None:intergenic 55.0%
GAACGGTTAAACGCCGCAGT+TGG + chr1.1:49545549-49545568 None:intergenic 55.0%
GAGGAGATGGATCCGGTGAA+CGG + chr1.1:49545799-49545818 None:intergenic 55.0%
GAGGATCATGGGTCGGGTAT+CGG + chr1.1:49545298-49545317 None:intergenic 55.0%
GCCATGGAAACGGAGGTTTC+CGG + chr1.1:49545624-49545643 None:intergenic 55.0%
GGAAACCTCCGTTTCCATGG+CGG - chr1.1:49545623-49545642 MS.gene000171:CDS 55.0%
GGGGGATTGTTGTGAGGATG+AGG + chr1.1:49545239-49545258 None:intergenic 55.0%
GGTACGAACCGCCATGGAAA+CGG + chr1.1:49545634-49545653 None:intergenic 55.0%
TCACCGGATCCATCTCCTCA+TGG - chr1.1:49545800-49545819 MS.gene000171:CDS 55.0%
TCACCGGTACTCCACATGGA+TGG - chr1.1:49545889-49545908 MS.gene000171:CDS 55.0%
TTAAACGCCGCAGTTGGAGG+TGG + chr1.1:49545543-49545562 None:intergenic 55.0%
! GACGGTGGTGATCACCGTTT+TGG + chr1.1:49545199-49545218 None:intergenic 55.0%
!! TAACTTGATTTGCGCCGCCG+AGG - chr1.1:49545848-49545867 MS.gene000171:CDS 55.0%
!! TCAACAGAAGTGCCGCCATG+AGG + chr1.1:49545818-49545837 None:intergenic 55.0%
AACGGCGATCTGGATGTGGC+CGG + chr1.1:49545346-49545365 None:intergenic 60.0%
AAGCTCGGTACGAACCGCCA+TGG + chr1.1:49545640-49545659 None:intergenic 60.0%
AAGCTGCGGAGGTTGCTCTC+AGG - chr1.1:49546468-49546487 MS.gene000171:CDS 60.0%
AATCACGGACTCCGGCATCG+AGG + chr1.1:49545668-49545687 None:intergenic 60.0%
ACGAACCGCCATGGAAACGG+AGG + chr1.1:49545631-49545650 None:intergenic 60.0%
AGACGGAGGAAACGGCGATC+TGG + chr1.1:49545356-49545375 None:intergenic 60.0%
AGCGACGGAGACGGAGGAAA+CGG + chr1.1:49545364-49545383 None:intergenic 60.0%
AGCTGCGGAGGTTGCTCTCA+GGG - chr1.1:49546469-49546488 MS.gene000171:CDS 60.0%
CCGCCATGAGGAGATGGATC+CGG + chr1.1:49545806-49545825 None:intergenic 60.0%
CCGGATCCATCTCCTCATGG+CGG - chr1.1:49545803-49545822 MS.gene000171:CDS 60.0%
CGGTTAAACGCCGCAGTTGG+AGG + chr1.1:49545546-49545565 None:intergenic 60.0%
GATCTGGATGTGGCCGGTGT+GGG + chr1.1:49545340-49545359 None:intergenic 60.0%
GGAGGAAGAAGAAGCTGCGG+AGG - chr1.1:49546457-49546476 MS.gene000171:CDS 60.0%
! TGGATCGGGTTGTGTTGCGG+CGG + chr1.1:49545388-49545407 None:intergenic 60.0%
!! GAAGTGCCGCCATGAGGAGA+TGG + chr1.1:49545812-49545831 None:intergenic 60.0%
!! GATCATGGGTCGGGTATCGG+AGG + chr1.1:49545295-49545314 None:intergenic 60.0%
CGATCTGGATGTGGCCGGTG+TGG + chr1.1:49545341-49545360 None:intergenic 65.0%
TTGTGTTGCGGCGGCAGCGA+CGG + chr1.1:49545379-49545398 None:intergenic 65.0%
TGCGGCGGCAGCGACGGAGA+CGG + chr1.1:49545373-49545392 None:intergenic 75.0%
! GGCGGCAGCGACGGAGACGG+AGG + chr1.1:49545370-49545389 None:intergenic 80.0%


Chromosome Type Strat End Strand Name
chr1.1 gene 49545192 49546511 49545192 ID=MS.gene000171
chr1.1 mRNA 49545192 49546511 49545192 ID=MS.gene000171.t1;Parent=MS.gene000171
chr1.1 exon 49545192 49546511 49545192 ID=MS.gene000171.t1.exon1;Parent=MS.gene000171.t1
chr1.1 CDS 49545192 49546511 49545192 ID=cds.MS.gene000171.t1;Parent=MS.gene000171.t1
Gene Sequence

>MS.gene000171

ATGGCCAAAACGGTGATCACCACCGTCGTTTCACTCATCACAATCCTCATCCTCACAACAATCCCCCAATCAACGGCTGAGATCAAATCCCTCACAATAACCTCCGATACCCGACCCATGATCCTCTTAGAGAAATTCGGGTTCACCCACACCGGCCACATCCAGATCGCCGTTTCCTCCGTCTCCGTCGCTGCCGCCGCAACACAACCCGATCCATCTCGTCTCGGATTCTTCCTCTTAAGCGAAGAATCGCTTCTACAAGTCCTCATCGAGATCCAACAAAACCCTAGCTTCTGCGTTCTCGATTCACATTACATCACGCGTTTATTCACTTTCCGTGATCTTTCACCACCTCCAACTGCGGCGTTTAACCGTTCTTACCCCGTAACTTCTCCGAATGAGTTCAGTCTCTTCTTCGCTAACTGTGCACCGGAAACCTCCGTTTCCATGGCGGTTCGTACCGAGCTTTTCAACCTCGATGCCGGAGTCCGTGATTATCTTTCCGCCGGTCAAACTCAGTTACCGTCTCTGTTTTTTCTCTTCTCCGTCGTGTACTTCGGTTTTCTCGGTGTTTGGTTCTATGTTTGTTACAATAACAAACGCTCCGTTCACCGGATCCATCTCCTCATGGCGGCACTTCTGTTGATGAAAGCTCTTAACTTGATTTGCGCCGCCGAGGATAAACATTATGTCAAGGTCACCGGTACTCCACATGGATGGGATGTTCTCTTTTACATTTTCCAGTTTATCCGTGTCGTGTTGCTTTTCACCGTCATTGTATTGATCGGAACTGGATGGTCGTTTTTGAAGCCCTTTTTGCAAGAAAGGGAGAAGAAGGTGCTTATGATTGTTATTCCTCTTCAGGTTTTGGCGAATTTAGCTTCCGTTGTAATCGGCGAAACTGGTCCTTTTATCAAGGATTGGGTTACTTGGAATCAGGTTTTCTTGCTTGTTGATATCATTTGTTGTTGTGCAATCATTTTTCCTATTGTATGGTCGATTAAATCGCTTAGGGAAACCTCAAAGACCGATGGAAAAGCTGCTAGGAATCTCGCGAAGTTAACACTTTTTAGGCAGTTTTACATTGTTGTTATCGGCTATCTTTACTTCACACGCATTGTTGTTTTTGCTCTCAAGACCATTACTGCTTATAAGTATAGGTGGGTTAGCAATCTTGCTGAGGAGGGTGCTAGTCTTGCATTTTACATTGTCATGTTTTACATGTTTATGCCGGTGGAGAAGAATGAGTATTTTGTGCTTGATGAGGAGGAAGAAGAAGCTGCGGAGGTTGCTCTCAGGGAAGAAGAGTTTGAGCTTTGA
Protein sequence

>MS.gene000171.t1

MAKTVITTVVSLITILILTTIPQSTAEIKSLTITSDTRPMILLEKFGFTHTGHIQIAVSSVSVAAAATQPDPSRLGFFLLSEESLLQVLIEIQQNPSFCVLDSHYITRLFTFRDLSPPPTAAFNRSYPVTSPNEFSLFFANCAPETSVSMAVRTELFNLDAGVRDYLSAGQTQLPSLFFLFSVVYFGFLGVWFYVCYNNKRSVHRIHLLMAALLLMKALNLICAAEDKHYVKVTGTPHGWDVLFYIFQFIRVVLLFTVIVLIGTGWSFLKPFLQEREKKVLMIVIPLQVLANLASVVIGETGPFIKDWVTWNQVFLLVDIICCCAIIFPIVWSIKSLRETSKTDGKAARNLAKLTLFRQFYIVVIGYLYFTRIVVFALKTITAYKYRWVSNLAEEGASLAFYIVMFYMFMPVEKNEYFVLDEEEEEAAEVALREEEFEL