Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene000320.t1 | O22585.1 | 99.4 | 496 | 3 | 0 | 1 | 496 | 1 | 496 | 6.50E-299 | 1035.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene000320.t1 | O22585 | 99.4 | 496 | 3 | 0 | 1 | 496 | 1 | 496 | 1.6e-301 | 1035.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene000320.t1 | A0A072UUL3 | 98.0 | 496 | 10 | 0 | 1 | 496 | 1 | 496 | 1.6e-294 | 1020.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene000320 | MS.gene49858 | PPI |
| MS.gene35779 | MS.gene000320 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene000320.t1 | MTR_4g045667 | 97.984 | 496 | 10 | 0 | 1 | 496 | 1 | 496 | 0.0 | 1014 |
| MS.gene000320.t1 | MTR_2g089030 | 73.511 | 487 | 129 | 0 | 8 | 494 | 81 | 567 | 0.0 | 783 |
| MS.gene000320.t1 | MTR_5g013620 | 50.805 | 435 | 197 | 4 | 11 | 442 | 87 | 507 | 5.87e-158 | 460 |
| MS.gene000320.t1 | MTR_5g013640 | 50.808 | 433 | 196 | 4 | 13 | 442 | 87 | 505 | 3.30e-157 | 458 |
| MS.gene000320.t1 | MTR_4g099110 | 51.039 | 433 | 201 | 5 | 13 | 442 | 78 | 502 | 1.69e-153 | 448 |
| MS.gene000320.t1 | MTR_7g077410 | 49.315 | 438 | 212 | 4 | 12 | 445 | 264 | 695 | 3.36e-149 | 443 |
| MS.gene000320.t1 | MTR_5g026210 | 45.293 | 393 | 211 | 3 | 12 | 402 | 217 | 607 | 4.87e-129 | 389 |
| MS.gene000320.t1 | MTR_6g477780 | 52.035 | 344 | 156 | 6 | 104 | 442 | 9 | 348 | 2.95e-119 | 355 |
| MS.gene000320.t1 | MTR_8g099775 | 37.443 | 438 | 261 | 8 | 14 | 444 | 80 | 511 | 6.11e-101 | 313 |
| MS.gene000320.t1 | MTR_5g026210 | 46.599 | 294 | 151 | 2 | 12 | 304 | 217 | 505 | 1.08e-97 | 304 |
| MS.gene000320.t1 | MTR_2g020240 | 37.666 | 377 | 221 | 6 | 13 | 383 | 83 | 451 | 1.22e-88 | 281 |
| MS.gene000320.t1 | MTR_5g026210 | 47.951 | 244 | 126 | 1 | 12 | 254 | 217 | 460 | 1.27e-84 | 269 |
| MS.gene000320.t1 | MTR_2g020240 | 38.820 | 322 | 184 | 5 | 67 | 383 | 3 | 316 | 8.64e-79 | 251 |
| MS.gene000320.t1 | MTR_6g477770 | 50.538 | 93 | 46 | 0 | 13 | 105 | 106 | 198 | 2.48e-29 | 114 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene000320.t1 | AT4G15210 | 68.750 | 496 | 154 | 1 | 2 | 496 | 3 | 498 | 0.0 | 741 |
| MS.gene000320.t1 | AT2G32290 | 67.206 | 494 | 159 | 2 | 2 | 494 | 67 | 558 | 0.0 | 702 |
| MS.gene000320.t1 | AT4G15210 | 69.213 | 445 | 137 | 0 | 52 | 496 | 1 | 445 | 0.0 | 676 |
| MS.gene000320.t1 | AT4G15210 | 69.213 | 445 | 137 | 0 | 52 | 496 | 1 | 445 | 0.0 | 676 |
| MS.gene000320.t1 | AT4G15210 | 70.833 | 408 | 118 | 1 | 2 | 408 | 3 | 410 | 0.0 | 630 |
| MS.gene000320.t1 | AT4G00490 | 51.945 | 437 | 200 | 4 | 13 | 445 | 95 | 525 | 1.45e-163 | 474 |
| MS.gene000320.t1 | AT4G17090 | 50.115 | 433 | 205 | 4 | 13 | 442 | 86 | 510 | 3.88e-160 | 466 |
| MS.gene000320.t1 | AT3G23920 | 50.909 | 440 | 209 | 6 | 13 | 447 | 106 | 543 | 2.18e-158 | 462 |
| MS.gene000320.t1 | AT2G45880 | 46.697 | 439 | 222 | 5 | 12 | 445 | 247 | 678 | 4.07e-139 | 417 |
| MS.gene000320.t1 | AT5G45300 | 40.826 | 436 | 250 | 4 | 12 | 445 | 254 | 683 | 5.76e-119 | 365 |
| MS.gene000320.t1 | AT5G45300 | 40.826 | 436 | 250 | 4 | 12 | 445 | 252 | 681 | 6.91e-119 | 364 |
| MS.gene000320.t1 | AT5G45300 | 40.826 | 436 | 250 | 4 | 12 | 445 | 268 | 697 | 1.08e-118 | 364 |
| MS.gene000320.t1 | AT5G55700 | 40.268 | 447 | 245 | 9 | 13 | 445 | 92 | 530 | 4.09e-112 | 342 |
| MS.gene000320.t1 | AT5G55700 | 41.691 | 343 | 182 | 8 | 113 | 445 | 33 | 367 | 3.91e-85 | 267 |
| MS.gene000320.t1 | AT5G18670 | 32.653 | 441 | 278 | 6 | 1 | 439 | 75 | 498 | 2.23e-73 | 241 |
Find 108 sgRNAs with CRISPR-Local
Find 170 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCTGGAATTGGAGAGTTTC+AGG | 0.170209 | 4.4:-54954702 | MS.gene000320:intron |
| ACACCAATCGCTCCGGTATT+AGG | 0.274428 | 4.4:-54955270 | MS.gene000320:CDS |
| ACTCCATACATTCGAAGTTT+TGG | 0.293619 | 4.4:+54953821 | None:intergenic |
| GGATGGCAATTTCCTGGAAT+TGG | 0.314241 | 4.4:-54954713 | MS.gene000320:CDS |
| AGAACATCATCAGGAATCTT+TGG | 0.317642 | 4.4:+54953570 | None:intergenic |
| CTACATTTCCTCCACATTGA+TGG | 0.320030 | 4.4:+54955362 | None:intergenic |
| TGAAGCTAATAAAGCTTTCC+TGG | 0.337953 | 4.4:-54954370 | MS.gene000320:CDS |
| TTGAAGAATTCGGTAGATTC+TGG | 0.345794 | 4.4:+54954483 | None:intergenic |
| AGTTGTTCTTTAAGTCCATC+TGG | 0.346354 | 4.4:+54955544 | None:intergenic |
| GATAACAAACCCATCTTTCA+TGG | 0.347915 | 4.4:-54955220 | MS.gene000320:CDS |
| GATCACCATGATTCAGCAAT+TGG | 0.366811 | 4.4:+54954403 | None:intergenic |
| GAAACAGACATGAAAGTTGA+TGG | 0.371042 | 4.4:-54953504 | MS.gene000320:CDS |
| ACTGGGAGCATGACATAAAC+TGG | 0.372512 | 4.4:+54955697 | None:intergenic |
| AGCCAATACCGCCGTTCCCC+TGG | 0.375627 | 4.4:-54953533 | MS.gene000320:CDS |
| CGATTGGTGTAGAAGATATC+AGG | 0.378414 | 4.4:+54955283 | None:intergenic |
| ACCTGAAACTCTCCAATTCC+AGG | 0.378431 | 4.4:+54954701 | None:intergenic |
| AATCAAGGATGGCAATTTCC+TGG | 0.389845 | 4.4:-54954719 | MS.gene000320:CDS |
| CATGTCTGTTTCTGAATCCC+AGG | 0.393293 | 4.4:+54953515 | None:intergenic |
| TCCCAGGGGAACGGCGGTAT+TGG | 0.394469 | 4.4:+54953531 | None:intergenic |
| CAAGCACCCACTTTGGTAAT+GGG | 0.400087 | 4.4:+54955323 | None:intergenic |
| AAGCTTTATTAGCTTCATCT+AGG | 0.401337 | 4.4:+54954376 | None:intergenic |
| TTGTACGTGCCAGCGTCATC+TGG | 0.406376 | 4.4:+54954513 | None:intergenic |
| GTCTTGCATTCAGTATGATT+TGG | 0.408923 | 4.4:+54953870 | None:intergenic |
| TTTGGTCCTGATCGCTTTAA+CGG | 0.417754 | 4.4:+54953588 | None:intergenic |
| GGCTGTTCTTCCATGAAAGA+TGG | 0.423150 | 4.4:+54955210 | None:intergenic |
| CTGGAGAAAATGCACTTTCA+AGG | 0.424053 | 4.4:-54953913 | MS.gene000320:CDS |
| CTAATTTGACTTTGCATCCC+AGG | 0.427549 | 4.4:+54954352 | None:intergenic |
| TCAAGCACCCACTTTGGTAA+TGG | 0.435426 | 4.4:+54955322 | None:intergenic |
| ACCGAATTCTTCAAAACAAA+TGG | 0.436385 | 4.4:-54954474 | MS.gene000320:CDS |
| GTGAGTTCTGCAGCGTGATT+CGG | 0.440264 | 4.4:+54954209 | None:intergenic |
| CTATGTATAATAAAGGTCTC+TGG | 0.447912 | 4.4:-54954254 | MS.gene000320:intron |
| CACCAATGCTCAGATATTCC+TGG | 0.447983 | 4.4:+54955245 | None:intergenic |
| CCTCCAAAACTTCGAATGTA+TGG | 0.451158 | 4.4:-54953824 | MS.gene000320:CDS |
| CGAAAGCTGGTCATTCTGAA+TGG | 0.462001 | 4.4:-54954542 | MS.gene000320:CDS |
| AGGGACCTAAGGAGTATGAT+TGG | 0.463127 | 4.4:-54955453 | MS.gene000320:CDS |
| AAAGCAGCTGCAGCGAAAGC+TGG | 0.467301 | 4.4:-54954555 | MS.gene000320:CDS |
| CATCAATGTGGAGGAAATGT+AGG | 0.469434 | 4.4:-54955361 | MS.gene000320:CDS |
| CAAAGTTCAACTCACCTCAA+TGG | 0.475916 | 4.4:+54955189 | None:intergenic |
| GCACTCCAATCATACTCCTT+AGG | 0.478043 | 4.4:+54955448 | None:intergenic |
| GGCACATACCTTACTGAGAA+AGG | 0.478106 | 4.4:-54954453 | MS.gene000320:CDS |
| ATTGGTTAGAATACCAAGTC+AGG | 0.481760 | 4.4:+54954421 | None:intergenic |
| GGTAAAGATGCATGCAGATC+AGG | 0.484424 | 4.4:-54953732 | MS.gene000320:intron |
| GCTTCATTAAGAACATCATC+AGG | 0.484558 | 4.4:+54953561 | None:intergenic |
| AAGGAAAATTCTTCCTGACT+TGG | 0.485423 | 4.4:-54954434 | MS.gene000320:CDS |
| ATAGACATTGAAGTCGGTCT+TGG | 0.489311 | 4.4:-54954779 | MS.gene000320:CDS |
| CCGTCTTATCCGCAGAATCA+AGG | 0.494530 | 4.4:-54954734 | MS.gene000320:CDS |
| GGTCCTGATCGCTTTAACGG+TGG | 0.496755 | 4.4:+54953591 | None:intergenic |
| CCGTCTTTGTTGACACCTTG+TGG | 0.501716 | 4.4:+54953848 | None:intergenic |
| ACCACAGAAACTTGTTCAGC+AGG | 0.503110 | 4.4:-54954051 | MS.gene000320:intron |
| CCTTGATTCTGCGGATAAGA+CGG | 0.507484 | 4.4:+54954734 | None:intergenic |
| TCTAACCAATTGCTGAATCA+TGG | 0.509733 | 4.4:-54954408 | MS.gene000320:CDS |
| CACGCTGCAGAACTCACTGC+TGG | 0.509974 | 4.4:-54954203 | MS.gene000320:CDS |
| CAAATTGCAGGATTACTGTT+CGG | 0.510588 | 4.4:-54953640 | MS.gene000320:intron |
| GCTGTTCTTCCATGAAAGAT+GGG | 0.513947 | 4.4:+54955211 | None:intergenic |
| CTCGTGCAACTACGAGCAGC+AGG | 0.514137 | 4.4:-54955523 | MS.gene000320:CDS |
| TTCAATGTCTATTATAACCT+CGG | 0.515003 | 4.4:+54954790 | None:intergenic |
| ATATTCCTGGTTCCTAATAC+CGG | 0.516943 | 4.4:+54955258 | None:intergenic |
| GAAAGCTGGTCATTCTGAAT+GGG | 0.518236 | 4.4:-54954541 | MS.gene000320:CDS |
| TGTTATGATCGATGTCTGGT+GGG | 0.519735 | 4.4:-54955491 | MS.gene000320:CDS |
| CCGATGTCAAGCACCCACTT+TGG | 0.522352 | 4.4:+54955316 | None:intergenic |
| ATCAATGTGGAGGAAATGTA+GGG | 0.527842 | 4.4:-54955360 | MS.gene000320:CDS |
| ATCTTCTACACCAATCGCTC+CGG | 0.528546 | 4.4:-54955277 | MS.gene000320:CDS |
| CATTGAACAAAAGGGACCTA+AGG | 0.530418 | 4.4:-54955464 | MS.gene000320:CDS |
| CTTGATTCTGCGGATAAGAC+GGG | 0.531810 | 4.4:+54954735 | None:intergenic |
| GACCCTGAAAAGTACAATCA+TGG | 0.532554 | 4.4:-54953618 | MS.gene000320:CDS |
| GTTCCTAATACCGGAGCGAT+TGG | 0.532915 | 4.4:+54955267 | None:intergenic |
| GTTGTTCTTTAAGTCCATCT+GGG | 0.534198 | 4.4:+54955545 | None:intergenic |
| GTGTTATGACAAATATTTGA+GGG | 0.537662 | 4.4:-54954586 | MS.gene000320:CDS |
| GCCAATACCGCCGTTCCCCT+GGG | 0.540968 | 4.4:-54953532 | MS.gene000320:CDS |
| ATACCACCGTTAAAGCGATC+AGG | 0.546653 | 4.4:-54953594 | MS.gene000320:CDS |
| ATGTCTGTTTCTGAATCCCA+GGG | 0.546684 | 4.4:+54953516 | None:intergenic |
| TAAAGGTCTCTGGAATTCAC+TGG | 0.547752 | 4.4:-54954244 | MS.gene000320:intron |
| AACCAGGAATATCTGAGCAT+TGG | 0.551269 | 4.4:-54955247 | MS.gene000320:CDS |
| CTACGAGCAGCAGGCGTCGA+CGG | 0.551976 | 4.4:-54955514 | MS.gene000320:CDS |
| GTGTTATGATCGATGTCTGG+TGG | 0.555121 | 4.4:-54955492 | MS.gene000320:CDS |
| TCATGGAAGAACAGCCATTG+AGG | 0.556827 | 4.4:-54955203 | MS.gene000320:intron |
| GTTTCTGAATCCCAGGGGAA+CGG | 0.561610 | 4.4:+54953522 | None:intergenic |
| ACGGTGTTATGATCGATGTC+TGG | 0.564978 | 4.4:-54955495 | MS.gene000320:CDS |
| GTTATGATCGATGTCTGGTG+GGG | 0.566303 | 4.4:-54955490 | MS.gene000320:CDS |
| AACAGGTACTGAGTGGAGGT+TGG | 0.567639 | 4.4:-54953955 | MS.gene000320:intron |
| GAAGTCGGTCTTGGTCCAGC+AGG | 0.569062 | 4.4:-54954770 | MS.gene000320:CDS |
| TCGCTCCGGTATTAGGAACC+AGG | 0.580310 | 4.4:-54955263 | MS.gene000320:CDS |
| AATTGCCATCCTTGATTCTG+CGG | 0.582906 | 4.4:+54954725 | None:intergenic |
| GGTATCCATCTCTATCATCA+AGG | 0.584578 | 4.4:+54954171 | None:intergenic |
| GGGTATCTGAGTTCTCCTGC+TGG | 0.587322 | 4.4:+54954755 | None:intergenic |
| GAAGCTAATAAAGCTTTCCT+GGG | 0.588794 | 4.4:-54954369 | MS.gene000320:CDS |
| TACAACCTTGATGATAGAGA+TGG | 0.592832 | 4.4:-54954176 | MS.gene000320:CDS |
| GTTATAATAGACATTGAAGT+CGG | 0.595729 | 4.4:-54954785 | MS.gene000320:CDS |
| ACCTGCTGAACAAGTTTCTG+TGG | 0.599130 | 4.4:+54954050 | None:intergenic |
| TAAACATCCCATTACCAAAG+TGG | 0.599300 | 4.4:-54955330 | MS.gene000320:CDS |
| TTATGATCGATGTCTGGTGG+GGG | 0.599720 | 4.4:-54955489 | MS.gene000320:CDS |
| CCAAAGTGGGTGCTTGACAT+CGG | 0.611618 | 4.4:-54955316 | MS.gene000320:CDS |
| AAACATCCCATTACCAAAGT+GGG | 0.623128 | 4.4:-54955329 | MS.gene000320:CDS |
| ATGTCATTCCATCAATGTGG+AGG | 0.631344 | 4.4:-54955370 | MS.gene000320:CDS |
| AGTGTTATGACAAATATTTG+AGG | 0.633200 | 4.4:-54954587 | MS.gene000320:CDS |
| AATGTCTTCGAAGACCCAGA+TGG | 0.637363 | 4.4:-54955559 | MS.gene000320:CDS |
| CTTATCCGCAGAATCAAGGA+TGG | 0.644913 | 4.4:-54954730 | MS.gene000320:CDS |
| CCACAAGGTGTCAACAAAGA+CGG | 0.645003 | 4.4:-54953848 | MS.gene000320:CDS |
| TCTGAATCCCAGGGGAACGG+CGG | 0.648038 | 4.4:+54953525 | None:intergenic |
| ATACTGAATGCAAGACCACA+AGG | 0.668768 | 4.4:-54953863 | MS.gene000320:CDS |
| AGGTCTCTGGAATTCACTGG+TGG | 0.672373 | 4.4:-54954241 | MS.gene000320:CDS |
| ATCATGTCATTCCATCAATG+TGG | 0.675140 | 4.4:-54955373 | MS.gene000320:CDS |
| TTAGATCATCTGATAGACGA+AGG | 0.691757 | 4.4:+54953792 | None:intergenic |
| TGGGAACTACCAGATGACGC+TGG | 0.712299 | 4.4:-54954522 | MS.gene000320:CDS |
| TCAATGTGGAGGAAATGTAG+GGG | 0.715859 | 4.4:-54955359 | MS.gene000320:CDS |
| TATGAACAGGTACTGAGTGG+AGG | 0.727187 | 4.4:-54953959 | MS.gene000320:intron |
| TGTCTGTTTCTGAATCCCAG+GGG | 0.737797 | 4.4:+54953517 | None:intergenic |
| ATGTATGAACAGGTACTGAG+TGG | 0.748627 | 4.4:-54953962 | MS.gene000320:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAGTTAGAGGTTAATTATT+TGG | + | chr4.4:54954966-54954985 | None:intergenic | 20.0% |
| !! | ATTATTTGGAAGAAAAATGA+AGG | + | chr4.4:54954952-54954971 | None:intergenic | 20.0% |
| !! | TGATATATTCAAAAAGTTTG+TGG | - | chr4.4:54955483-54955502 | MS.gene000320:CDS | 20.0% |
| !! | TTAAAACTGTGAAATTATCT+GGG | - | chr4.4:54954297-54954316 | MS.gene000320:intron | 20.0% |
| !!! | TTTAAAACTGTGAAATTATC+TGG | - | chr4.4:54954296-54954315 | MS.gene000320:intron | 20.0% |
| ! | AACTAATATCCATACTGATA+TGG | - | chr4.4:54954092-54954111 | MS.gene000320:CDS | 25.0% |
| ! | AGTGTTATGACAAATATTTG+AGG | - | chr4.4:54954649-54954668 | MS.gene000320:intron | 25.0% |
| ! | CCTCTAACTATGTATAATAA+AGG | - | chr4.4:54954975-54954994 | MS.gene000320:intron | 25.0% |
| ! | CCTTTATTATACATAGTTAG+AGG | + | chr4.4:54954978-54954997 | None:intergenic | 25.0% |
| ! | GTGTTATGACAAATATTTGA+GGG | - | chr4.4:54954650-54954669 | MS.gene000320:intron | 25.0% |
| ! | GTTATAATAGACATTGAAGT+CGG | - | chr4.4:54954451-54954470 | MS.gene000320:CDS | 25.0% |
| ! | TTCAATGTCTATTATAACCT+CGG | + | chr4.4:54954449-54954468 | None:intergenic | 25.0% |
| !! | TTTCAACTTGTTCAAAAATG+TGG | - | chr4.4:54953824-54953843 | MS.gene000320:CDS | 25.0% |
| !!! | AAAAGTACCATAGTAACTAA+TGG | + | chr4.4:54954347-54954366 | None:intergenic | 25.0% |
| AAAATGTGAAGTGCATTACA+TGG | + | chr4.4:54955540-54955559 | None:intergenic | 30.0% | |
| AAGGTGATATTCGTTAATTG+CGG | + | chr4.4:54954933-54954952 | None:intergenic | 30.0% | |
| AATTTAACATGTAGAGCAAG+CGG | + | chr4.4:54955243-54955262 | None:intergenic | 30.0% | |
| ACCGAATTCTTCAAAACAAA+TGG | - | chr4.4:54954762-54954781 | MS.gene000320:CDS | 30.0% | |
| AGAGAAAAAATTGAAGTTGC+TGG | - | chr4.4:54955304-54955323 | MS.gene000320:CDS | 30.0% | |
| AGTATGTGTAAGAAACAGTT+TGG | + | chr4.4:54954583-54954602 | None:intergenic | 30.0% | |
| CCATGTAAGAGAATTAACTA+GGG | - | chr4.4:54954123-54954142 | MS.gene000320:CDS | 30.0% | |
| CTATGTATAATAAAGGTCTC+TGG | - | chr4.4:54954982-54955001 | MS.gene000320:intron | 30.0% | |
| TCTTGACCAATGATATAGAT+CGG | + | chr4.4:54954212-54954231 | None:intergenic | 30.0% | |
| ! | AAGAGAATTAACTAGGGTTT+TGG | - | chr4.4:54954129-54954148 | MS.gene000320:CDS | 30.0% |
| ! | AGAATTTTCCTTTCTCAGTA+AGG | + | chr4.4:54954794-54954813 | None:intergenic | 30.0% |
| ! | ATTTTACATGTCTTGAGATG+AGG | - | chr4.4:54955130-54955149 | MS.gene000320:intron | 30.0% |
| ! | TTTGGTAACTGGAATAAGAT+TGG | - | chr4.4:54954147-54954166 | MS.gene000320:CDS | 30.0% |
| ! | TTTTACATGTCTTGAGATGA+GGG | - | chr4.4:54955131-54955150 | MS.gene000320:intron | 30.0% |
| !! | AAGCTTTATTAGCTTCATCT+AGG | + | chr4.4:54954863-54954882 | None:intergenic | 30.0% |
| !! | CTTAGTCATTGATTTGAGAT+CGG | + | chr4.4:54954275-54954294 | None:intergenic | 30.0% |
| !!! | GCCATTTGTTTTGAAGAATT+CGG | + | chr4.4:54954766-54954785 | None:intergenic | 30.0% |
| AAACATCCCATTACCAAAGT+GGG | - | chr4.4:54953907-54953926 | MS.gene000320:CDS | 35.0% | |
| AACAGTAATCCTGCAATTTG+AGG | + | chr4.4:54955596-54955615 | None:intergenic | 35.0% | |
| AAGGAAAATTCTTCCTGACT+TGG | - | chr4.4:54954802-54954821 | MS.gene000320:CDS | 35.0% | |
| ACAGTAATCCTGCAATTTGA+GGG | + | chr4.4:54955595-54955614 | None:intergenic | 35.0% | |
| AGAACATCATCAGGAATCTT+TGG | + | chr4.4:54955669-54955688 | None:intergenic | 35.0% | |
| AGTTGTTCTTTAAGTCCATC+TGG | + | chr4.4:54953695-54953714 | None:intergenic | 35.0% | |
| ATATTCCTGGTTCCTAATAC+CGG | + | chr4.4:54953981-54954000 | None:intergenic | 35.0% | |
| ATCAATGTGGAGGAAATGTA+GGG | - | chr4.4:54953876-54953895 | MS.gene000320:CDS | 35.0% | |
| ATCATGTCATTCCATCAATG+TGG | - | chr4.4:54953863-54953882 | MS.gene000320:CDS | 35.0% | |
| ATCCTTCCGATCTATATCAT+TGG | - | chr4.4:54954203-54954222 | MS.gene000320:CDS | 35.0% | |
| ATTGGTTAGAATACCAAGTC+AGG | + | chr4.4:54954818-54954837 | None:intergenic | 35.0% | |
| CAAATTGCAGGATTACTGTT+CGG | - | chr4.4:54955596-54955615 | MS.gene000320:intron | 35.0% | |
| CACAGTAGTTTATGTGTATG+AGG | + | chr4.4:54953569-54953588 | None:intergenic | 35.0% | |
| CCCTAGTTAATTCTCTTACA+TGG | + | chr4.4:54954126-54954145 | None:intergenic | 35.0% | |
| CGAAACATGAATGTATGAAC+AGG | - | chr4.4:54955264-54955283 | MS.gene000320:CDS | 35.0% | |
| GAAACAGACATGAAAGTTGA+TGG | - | chr4.4:54955732-54955751 | MS.gene000320:CDS | 35.0% | |
| GAAGCTAATAAAGCTTTCCT+GGG | - | chr4.4:54954867-54954886 | MS.gene000320:intron | 35.0% | |
| GATAACAAACCCATCTTTCA+TGG | - | chr4.4:54954016-54954035 | MS.gene000320:intron | 35.0% | |
| GCCATGTAAGAGAATTAACT+AGG | - | chr4.4:54954122-54954141 | MS.gene000320:CDS | 35.0% | |
| GCTTCATTAAGAACATCATC+AGG | + | chr4.4:54955678-54955697 | None:intergenic | 35.0% | |
| GCTTCATTTCCATATCAGTA+TGG | + | chr4.4:54954104-54954123 | None:intergenic | 35.0% | |
| GTCTTGCATTCAGTATGATT+TGG | + | chr4.4:54955369-54955388 | None:intergenic | 35.0% | |
| GTTGTTCTTTAAGTCCATCT+GGG | + | chr4.4:54953694-54953713 | None:intergenic | 35.0% | |
| TAAACATCCCATTACCAAAG+TGG | - | chr4.4:54953906-54953925 | MS.gene000320:CDS | 35.0% | |
| TATGTGTATGAGGACTTACT+GGG | + | chr4.4:54953559-54953578 | None:intergenic | 35.0% | |
| TCTAACCAATTGCTGAATCA+TGG | - | chr4.4:54954828-54954847 | MS.gene000320:CDS | 35.0% | |
| TGAAGCTAATAAAGCTTTCC+TGG | - | chr4.4:54954866-54954885 | MS.gene000320:intron | 35.0% | |
| TTAGATCATCTGATAGACGA+AGG | + | chr4.4:54955447-54955466 | None:intergenic | 35.0% | |
| TTATGTGTATGAGGACTTAC+TGG | + | chr4.4:54953560-54953579 | None:intergenic | 35.0% | |
| TTGAAGAATTCGGTAGATTC+TGG | + | chr4.4:54954756-54954775 | None:intergenic | 35.0% | |
| ! | ACTCCATACATTCGAAGTTT+TGG | + | chr4.4:54955418-54955437 | None:intergenic | 35.0% |
| ! | ATGCCATGATTGTACTTTTC+AGG | + | chr4.4:54955624-54955643 | None:intergenic | 35.0% |
| ! | TACAACCTTGATGATAGAGA+TGG | - | chr4.4:54955060-54955079 | MS.gene000320:intron | 35.0% |
| ! | TGCCATGATTGTACTTTTCA+GGG | + | chr4.4:54955623-54955642 | None:intergenic | 35.0% |
| !! | CATTGTTTTTCTTCGTAGCT+CGG | - | chr4.4:54953638-54953657 | MS.gene000320:intron | 35.0% |
| !! | TTAACTAGGGTTTTGGTAAC+TGG | - | chr4.4:54954136-54954155 | MS.gene000320:CDS | 35.0% |
| !!! | ACACTATTTTTGCAATGGGA+CGG | + | chr4.4:54955089-54955108 | None:intergenic | 35.0% |
| !!! | ACGAGACACTATTTTTGCAA+TGG | + | chr4.4:54955094-54955113 | None:intergenic | 35.0% |
| !!! | CATACATTCGAAGTTTTGGA+GGG | + | chr4.4:54955414-54955433 | None:intergenic | 35.0% |
| !!! | CGAGACACTATTTTTGCAAT+GGG | + | chr4.4:54955093-54955112 | None:intergenic | 35.0% |
| !!! | GTCAGATCTTTTAAAATCCG+AGG | - | chr4.4:54954429-54954448 | MS.gene000320:CDS | 35.0% |
| AACCAGGAATATCTGAGCAT+TGG | - | chr4.4:54953989-54954008 | MS.gene000320:intron | 40.0% | |
| AATCAAGGATGGCAATTTCC+TGG | - | chr4.4:54954517-54954536 | MS.gene000320:CDS | 40.0% | |
| AATTGCCATCCTTGATTCTG+CGG | + | chr4.4:54954514-54954533 | None:intergenic | 40.0% | |
| AATTTGAGGGAAGAGGGTTA+AGG | + | chr4.4:54955582-54955601 | None:intergenic | 40.0% | |
| ATACTGAATGCAAGACCACA+AGG | - | chr4.4:54955373-54955392 | MS.gene000320:CDS | 40.0% | |
| ATAGACATTGAAGTCGGTCT+TGG | - | chr4.4:54954457-54954476 | MS.gene000320:CDS | 40.0% | |
| ATGTCATTCCATCAATGTGG+AGG | - | chr4.4:54953866-54953885 | MS.gene000320:CDS | 40.0% | |
| ATTTGAGGGAAGAGGGTTAA+GGG | + | chr4.4:54955581-54955600 | None:intergenic | 40.0% | |
| CAAAGTTCAACTCACCTCAA+TGG | + | chr4.4:54954050-54954069 | None:intergenic | 40.0% | |
| CATCAATGTGGAGGAAATGT+AGG | - | chr4.4:54953875-54953894 | MS.gene000320:CDS | 40.0% | |
| CATTGAACAAAAGGGACCTA+AGG | - | chr4.4:54953772-54953791 | MS.gene000320:CDS | 40.0% | |
| CCTCCAAAACTTCGAATGTA+TGG | - | chr4.4:54955412-54955431 | MS.gene000320:CDS | 40.0% | |
| CGATTGGTGTAGAAGATATC+AGG | + | chr4.4:54953956-54953975 | None:intergenic | 40.0% | |
| CTACATTTCCTCCACATTGA+TGG | + | chr4.4:54953877-54953896 | None:intergenic | 40.0% | |
| CTGGAGAAAATGCACTTTCA+AGG | - | chr4.4:54955323-54955342 | MS.gene000320:CDS | 40.0% | |
| GAAAGCTGGTCATTCTGAAT+GGG | - | chr4.4:54954695-54954714 | MS.gene000320:intron | 40.0% | |
| GACCAATGATATAGATCGGA+AGG | + | chr4.4:54954208-54954227 | None:intergenic | 40.0% | |
| GATCACCATGATTCAGCAAT+TGG | + | chr4.4:54954836-54954855 | None:intergenic | 40.0% | |
| GCTGTTCTTCCATGAAAGAT+GGG | + | chr4.4:54954028-54954047 | None:intergenic | 40.0% | |
| GGTATCCATCTCTATCATCA+AGG | + | chr4.4:54955068-54955087 | None:intergenic | 40.0% | |
| TCAATGTGGAGGAAATGTAG+GGG | - | chr4.4:54953877-54953896 | MS.gene000320:CDS | 40.0% | |
| TGGGGGATCATTGAACAAAA+GGG | - | chr4.4:54953764-54953783 | MS.gene000320:CDS | 40.0% | |
| TGTTATGATCGATGTCTGGT+GGG | - | chr4.4:54953745-54953764 | MS.gene000320:CDS | 40.0% | |
| TTTGGTCCTGATCGCTTTAA+CGG | + | chr4.4:54955651-54955670 | None:intergenic | 40.0% | |
| ! | ACAGTTTGGATTTAAAGCCG+AGG | + | chr4.4:54954569-54954588 | None:intergenic | 40.0% |
| ! | ACCATAGTAACTAATGGACC+CGG | + | chr4.4:54954341-54954360 | None:intergenic | 40.0% |
| ! | CTAATTTGACTTTGCATCCC+AGG | + | chr4.4:54954887-54954906 | None:intergenic | 40.0% |
| ! | GACCCTGAAAAGTACAATCA+TGG | - | chr4.4:54955618-54955637 | MS.gene000320:intron | 40.0% |
| ! | GTTTCAGGTGATAATTGCCT+CGG | - | chr4.4:54954549-54954568 | MS.gene000320:CDS | 40.0% |
| !! | ATGTATGAACAGGTACTGAG+TGG | - | chr4.4:54955274-54955293 | MS.gene000320:CDS | 40.0% |
| !! | ATGTCTGTTTCTGAATCCCA+GGG | + | chr4.4:54955723-54955742 | None:intergenic | 40.0% |
| !! | CCATACATTCGAAGTTTTGG+AGG | + | chr4.4:54955415-54955434 | None:intergenic | 40.0% |
| !! | TAAAGGTCTCTGGAATTCAC+TGG | - | chr4.4:54954992-54955011 | MS.gene000320:intron | 40.0% |
| AAAATTACTGCACCCGATCC+GGG | - | chr4.4:54954320-54954339 | MS.gene000320:intron | 45.0% | |
| AATGTCTTCGAAGACCCAGA+TGG | - | chr4.4:54953677-54953696 | MS.gene000320:intron | 45.0% | |
| ACCTGAAACTCTCCAATTCC+AGG | + | chr4.4:54954538-54954557 | None:intergenic | 45.0% | |
| ACCTGCTGAACAAGTTTCTG+TGG | + | chr4.4:54955189-54955208 | None:intergenic | 45.0% | |
| ATACCACCGTTAAAGCGATC+AGG | - | chr4.4:54955642-54955661 | MS.gene000320:intron | 45.0% | |
| ATCCTGCAATTTGAGGGAAG+AGG | + | chr4.4:54955589-54955608 | None:intergenic | 45.0% | |
| ATCTTCTACACCAATCGCTC+CGG | - | chr4.4:54953959-54953978 | MS.gene000320:intron | 45.0% | |
| CACCAATGCTCAGATATTCC+TGG | + | chr4.4:54953994-54954013 | None:intergenic | 45.0% | |
| CCTTGATTCTGCGGATAAGA+CGG | + | chr4.4:54954505-54954524 | None:intergenic | 45.0% | |
| CGAAAGCTGGTCATTCTGAA+TGG | - | chr4.4:54954694-54954713 | MS.gene000320:intron | 45.0% | |
| CTTATCCGCAGAATCAAGGA+TGG | - | chr4.4:54954506-54954525 | MS.gene000320:CDS | 45.0% | |
| CTTGATTCTGCGGATAAGAC+GGG | + | chr4.4:54954504-54954523 | None:intergenic | 45.0% | |
| GAAAATTACTGCACCCGATC+CGG | - | chr4.4:54954319-54954338 | MS.gene000320:intron | 45.0% | |
| GCACTCCAATCATACTCCTT+AGG | + | chr4.4:54953791-54953810 | None:intergenic | 45.0% | |
| GGATGGCAATTTCCTGGAAT+TGG | - | chr4.4:54954523-54954542 | MS.gene000320:CDS | 45.0% | |
| GGCACATACCTTACTGAGAA+AGG | - | chr4.4:54954783-54954802 | MS.gene000320:CDS | 45.0% | |
| GGCTGTTCTTCCATGAAAGA+TGG | + | chr4.4:54954029-54954048 | None:intergenic | 45.0% | |
| GGTAAAGATGCATGCAGATC+AGG | - | chr4.4:54955504-54955523 | MS.gene000320:CDS | 45.0% | |
| GTGGGGGATCATTGAACAAA+AGG | - | chr4.4:54953763-54953782 | MS.gene000320:CDS | 45.0% | |
| GTGTTATGATCGATGTCTGG+TGG | - | chr4.4:54953744-54953763 | MS.gene000320:CDS | 45.0% | |
| GTTATGATCGATGTCTGGTG+GGG | - | chr4.4:54953746-54953765 | MS.gene000320:CDS | 45.0% | |
| TCAAGCACCCACTTTGGTAA+TGG | + | chr4.4:54953917-54953936 | None:intergenic | 45.0% | |
| TCATGGAAGAACAGCCATTG+AGG | - | chr4.4:54954033-54954052 | MS.gene000320:intron | 45.0% | |
| TCCGGGTCCATTAGTTACTA+TGG | - | chr4.4:54954337-54954356 | MS.gene000320:intron | 45.0% | |
| TCCTGCAATTTGAGGGAAGA+GGG | + | chr4.4:54955588-54955607 | None:intergenic | 45.0% | |
| TCCTGGAATTGGAGAGTTTC+AGG | - | chr4.4:54954534-54954553 | MS.gene000320:CDS | 45.0% | |
| TTATGATCGATGTCTGGTGG+GGG | - | chr4.4:54953747-54953766 | MS.gene000320:CDS | 45.0% | |
| TTTGAGGGAAGAGGGTTAAG+GGG | + | chr4.4:54955580-54955599 | None:intergenic | 45.0% | |
| ! | ACCACAGAAACTTGTTCAGC+AGG | - | chr4.4:54955185-54955204 | MS.gene000320:intron | 45.0% |
| ! | ACTGGGAGCATGACATAAAC+TGG | + | chr4.4:54953542-54953561 | None:intergenic | 45.0% |
| ! | AGGGACCTAAGGAGTATGAT+TGG | - | chr4.4:54953783-54953802 | MS.gene000320:CDS | 45.0% |
| ! | AGTAACTAATGGACCCGGAT+CGG | + | chr4.4:54954336-54954355 | None:intergenic | 45.0% |
| ! | CAAGCACCCACTTTGGTAAT+GGG | + | chr4.4:54953916-54953935 | None:intergenic | 45.0% |
| ! | CCACAAGGTGTCAACAAAGA+CGG | - | chr4.4:54955388-54955407 | MS.gene000320:CDS | 45.0% |
| !! | ACGGTGTTATGATCGATGTC+TGG | - | chr4.4:54953741-54953760 | MS.gene000320:CDS | 45.0% |
| !! | CATGTCTGTTTCTGAATCCC+AGG | + | chr4.4:54955724-54955743 | None:intergenic | 45.0% |
| !! | TATGAACAGGTACTGAGTGG+AGG | - | chr4.4:54955277-54955296 | MS.gene000320:CDS | 45.0% |
| !! | TGTCTGTTTCTGAATCCCAG+GGG | + | chr4.4:54955722-54955741 | None:intergenic | 45.0% |
| ACACCAATCGCTCCGGTATT+AGG | - | chr4.4:54953966-54953985 | MS.gene000320:intron | 50.0% | |
| ACCCTCTTCCCTCAAATTGC+AGG | - | chr4.4:54955584-54955603 | MS.gene000320:intron | 50.0% | |
| CCAAAGTGGGTGCTTGACAT+CGG | - | chr4.4:54953920-54953939 | MS.gene000320:CDS | 50.0% | |
| CCGTCTTATCCGCAGAATCA+AGG | - | chr4.4:54954502-54954521 | MS.gene000320:CDS | 50.0% | |
| CCGTCTTTGTTGACACCTTG+TGG | + | chr4.4:54955391-54955410 | None:intergenic | 50.0% | |
| GTGAGTTCTGCAGCGTGATT+CGG | + | chr4.4:54955030-54955049 | None:intergenic | 50.0% | |
| GTTCCTAATACCGGAGCGAT+TGG | + | chr4.4:54953972-54953991 | None:intergenic | 50.0% | |
| GTTGTGTGACGCAGTAACTG+CGG | + | chr4.4:54954173-54954192 | None:intergenic | 50.0% | |
| GTTTCTGAATCCCAGGGGAA+CGG | + | chr4.4:54955717-54955736 | None:intergenic | 50.0% | |
| ! | GTAACTAATGGACCCGGATC+GGG | + | chr4.4:54954335-54954354 | None:intergenic | 50.0% |
| !! | AACAGGTACTGAGTGGAGGT+TGG | - | chr4.4:54955281-54955300 | MS.gene000320:CDS | 50.0% |
| !! | AGGTCTCTGGAATTCACTGG+TGG | - | chr4.4:54954995-54955014 | MS.gene000320:intron | 50.0% |
| AAAGCAGCTGCAGCGAAAGC+TGG | - | chr4.4:54954681-54954700 | MS.gene000320:intron | 55.0% | |
| CCGATGTCAAGCACCCACTT+TGG | + | chr4.4:54953923-54953942 | None:intergenic | 55.0% | |
| GGGTATCTGAGTTCTCCTGC+TGG | + | chr4.4:54954484-54954503 | None:intergenic | 55.0% | |
| GGTCCTGATCGCTTTAACGG+TGG | + | chr4.4:54955648-54955667 | None:intergenic | 55.0% | |
| TCGCTCCGGTATTAGGAACC+AGG | - | chr4.4:54953973-54953992 | MS.gene000320:intron | 55.0% | |
| TGGGAACTACCAGATGACGC+TGG | - | chr4.4:54954714-54954733 | MS.gene000320:CDS | 55.0% | |
| TTGTACGTGCCAGCGTCATC+TGG | + | chr4.4:54954726-54954745 | None:intergenic | 55.0% | |
| CACGCTGCAGAACTCACTGC+TGG | - | chr4.4:54955033-54955052 | MS.gene000320:intron | 60.0% | |
| CTCGTGCAACTACGAGCAGC+AGG | - | chr4.4:54953713-54953732 | MS.gene000320:intron | 60.0% | |
| GAAGTCGGTCTTGGTCCAGC+AGG | - | chr4.4:54954466-54954485 | MS.gene000320:CDS | 60.0% | |
| TCTGAATCCCAGGGGAACGG+CGG | + | chr4.4:54955714-54955733 | None:intergenic | 60.0% | |
| AGCCAATACCGCCGTTCCCC+TGG | - | chr4.4:54955703-54955722 | MS.gene000320:CDS | 65.0% | |
| GCCAATACCGCCGTTCCCCT+GGG | - | chr4.4:54955704-54955723 | MS.gene000320:CDS | 65.0% | |
| TCCCAGGGGAACGGCGGTAT+TGG | + | chr4.4:54955708-54955727 | None:intergenic | 65.0% | |
| !! | CTACGAGCAGCAGGCGTCGA+CGG | - | chr4.4:54953722-54953741 | MS.gene000320:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 54953500 | 54955758 | 54953500 | ID=MS.gene000320 |
| chr4.4 | mRNA | 54953500 | 54955758 | 54953500 | ID=MS.gene000320.t1;Parent=MS.gene000320 |
| chr4.4 | exon | 54955699 | 54955758 | 54955699 | ID=MS.gene000320.t1.exon1;Parent=MS.gene000320.t1 |
| chr4.4 | CDS | 54955699 | 54955758 | 54955699 | ID=cds.MS.gene000320.t1;Parent=MS.gene000320.t1 |
| chr4.4 | exon | 54955204 | 54955602 | 54955204 | ID=MS.gene000320.t1.exon2;Parent=MS.gene000320.t1 |
| chr4.4 | CDS | 54955204 | 54955602 | 54955204 | ID=cds.MS.gene000320.t1;Parent=MS.gene000320.t1 |
| chr4.4 | exon | 54954703 | 54954867 | 54954703 | ID=MS.gene000320.t1.exon3;Parent=MS.gene000320.t1 |
| chr4.4 | CDS | 54954703 | 54954867 | 54954703 | ID=cds.MS.gene000320.t1;Parent=MS.gene000320.t1 |
| chr4.4 | exon | 54954344 | 54954607 | 54954344 | ID=MS.gene000320.t1.exon4;Parent=MS.gene000320.t1 |
| chr4.4 | CDS | 54954344 | 54954607 | 54954344 | ID=cds.MS.gene000320.t1;Parent=MS.gene000320.t1 |
| chr4.4 | exon | 54954052 | 54954261 | 54954052 | ID=MS.gene000320.t1.exon5;Parent=MS.gene000320.t1 |
| chr4.4 | CDS | 54954052 | 54954261 | 54954052 | ID=cds.MS.gene000320.t1;Parent=MS.gene000320.t1 |
| chr4.4 | exon | 54953733 | 54953972 | 54953733 | ID=MS.gene000320.t1.exon6;Parent=MS.gene000320.t1 |
| chr4.4 | CDS | 54953733 | 54953972 | 54953733 | ID=cds.MS.gene000320.t1;Parent=MS.gene000320.t1 |
| chr4.4 | exon | 54953500 | 54953652 | 54953500 | ID=MS.gene000320.t1.exon7;Parent=MS.gene000320.t1 |
| chr4.4 | CDS | 54953500 | 54953652 | 54953500 | ID=cds.MS.gene000320.t1;Parent=MS.gene000320.t1 |
| Gene Sequence |
| Protein sequence |
