Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35779.t1 | XP_003597045.2 | 96.6 | 584 | 20 | 0 | 1 | 584 | 1 | 584 | 0.00E+00 | 1166.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35779.t1 | O64407 | 73.4 | 488 | 130 | 0 | 81 | 568 | 8 | 495 | 1.0e-227 | 790.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35779.t1 | G7IKM6 | 96.6 | 584 | 20 | 0 | 1 | 584 | 1 | 584 | 0.0e+00 | 1166.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049232 | MS.gene35779 | 0.85871 | 6.83E-63 | -1.69E-46 |
| MS.gene049396 | MS.gene35779 | 0.837868 | 4.03E-57 | -1.69E-46 |
| MS.gene05010 | MS.gene35779 | 0.828523 | 8.58E-55 | -1.69E-46 |
| MS.gene050216 | MS.gene35779 | 0.829557 | 4.82E-55 | -1.69E-46 |
| MS.gene050323 | MS.gene35779 | 0.818091 | 2.35E-52 | -1.69E-46 |
| MS.gene050496 | MS.gene35779 | 0.808248 | 3.40E-50 | -1.69E-46 |
| MS.gene050502 | MS.gene35779 | 0.801539 | 8.58E-49 | -1.69E-46 |
| MS.gene050662 | MS.gene35779 | 0.804143 | 2.49E-49 | -1.69E-46 |
| MS.gene050772 | MS.gene35779 | 0.820029 | 8.51E-53 | -1.69E-46 |
| MS.gene050868 | MS.gene35779 | 0.804636 | 1.96E-49 | -1.69E-46 |
| MS.gene050871 | MS.gene35779 | 0.807408 | 5.13E-50 | -1.69E-46 |
| MS.gene051268 | MS.gene35779 | 0.809881 | 1.52E-50 | -1.69E-46 |
| MS.gene051509 | MS.gene35779 | 0.806006 | 1.01E-49 | -1.69E-46 |
| MS.gene052966 | MS.gene35779 | 0.811134 | 8.15E-51 | -1.69E-46 |
| MS.gene053018 | MS.gene35779 | 0.816152 | 6.41E-52 | -1.69E-46 |
| MS.gene053574 | MS.gene35779 | 0.829841 | 4.11E-55 | -1.69E-46 |
| MS.gene053633 | MS.gene35779 | 0.812371 | 4.38E-51 | -1.69E-46 |
| MS.gene054954 | MS.gene35779 | 0.809149 | 2.18E-50 | -1.69E-46 |
| MS.gene055722 | MS.gene35779 | 0.814585 | 1.43E-51 | -1.69E-46 |
| MS.gene055776 | MS.gene35779 | 0.806187 | 9.29E-50 | -1.69E-46 |
| MS.gene056046 | MS.gene35779 | 0.830124 | 3.50E-55 | -1.69E-46 |
| MS.gene056448 | MS.gene35779 | 0.810176 | 1.31E-50 | -1.69E-46 |
| MS.gene056504 | MS.gene35779 | 0.819639 | 1.04E-52 | -1.69E-46 |
| MS.gene056510 | MS.gene35779 | 0.81053 | 1.10E-50 | -1.69E-46 |
| MS.gene056878 | MS.gene35779 | 0.802711 | 4.93E-49 | -1.69E-46 |
| MS.gene057076 | MS.gene35779 | 0.803616 | 3.20E-49 | -1.69E-46 |
| MS.gene058775 | MS.gene35779 | 0.804544 | 2.05E-49 | -1.69E-46 |
| MS.gene058777 | MS.gene35779 | 0.808432 | 3.11E-50 | -1.69E-46 |
| MS.gene05913 | MS.gene35779 | 0.833596 | 4.87E-56 | -1.69E-46 |
| MS.gene059367 | MS.gene35779 | 0.803909 | 2.78E-49 | -1.69E-46 |
| MS.gene059865 | MS.gene35779 | 0.836702 | 8.01E-57 | -1.69E-46 |
| MS.gene060482 | MS.gene35779 | 0.825714 | 4.03E-54 | -1.69E-46 |
| MS.gene060778 | MS.gene35779 | 0.805341 | 1.40E-49 | -1.69E-46 |
| MS.gene060982 | MS.gene35779 | 0.809199 | 2.13E-50 | -1.69E-46 |
| MS.gene061218 | MS.gene35779 | 0.821423 | 4.07E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene35779 | MS.gene027467 | PPI |
| MS.gene35779 | MS.gene51367 | PPI |
| MS.gene35779 | MS.gene001813 | PPI |
| MS.gene35779 | MS.gene000320 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35779.t1 | MTR_2g089030 | 96.575 | 584 | 20 | 0 | 1 | 584 | 1 | 584 | 0.0 | 1186 |
| MS.gene35779.t1 | MTR_4g045667 | 72.470 | 494 | 136 | 0 | 75 | 568 | 2 | 495 | 0.0 | 791 |
| MS.gene35779.t1 | MTR_4g099110 | 50.325 | 461 | 214 | 6 | 59 | 515 | 53 | 502 | 3.50e-156 | 459 |
| MS.gene35779.t1 | MTR_5g013640 | 50.577 | 433 | 197 | 4 | 86 | 515 | 87 | 505 | 2.52e-151 | 446 |
| MS.gene35779.t1 | MTR_5g013620 | 50.459 | 436 | 199 | 4 | 83 | 515 | 86 | 507 | 3.60e-151 | 446 |
| MS.gene35779.t1 | MTR_7g077410 | 47.826 | 460 | 229 | 6 | 63 | 517 | 241 | 694 | 1.50e-142 | 429 |
| MS.gene35779.t1 | MTR_5g026210 | 41.379 | 435 | 246 | 4 | 85 | 517 | 217 | 644 | 3.27e-120 | 370 |
| MS.gene35779.t1 | MTR_6g477780 | 47.170 | 371 | 180 | 7 | 177 | 535 | 9 | 375 | 1.39e-114 | 347 |
| MS.gene35779.t1 | MTR_8g099775 | 37.415 | 441 | 259 | 8 | 87 | 518 | 80 | 512 | 5.34e-101 | 317 |
| MS.gene35779.t1 | MTR_2g020240 | 35.308 | 439 | 263 | 8 | 83 | 516 | 80 | 502 | 3.75e-94 | 299 |
| MS.gene35779.t1 | MTR_5g026210 | 44.898 | 294 | 156 | 2 | 85 | 377 | 217 | 505 | 1.47e-91 | 291 |
| MS.gene35779.t1 | MTR_2g020240 | 35.171 | 381 | 227 | 7 | 140 | 516 | 3 | 367 | 5.71e-81 | 260 |
| MS.gene35779.t1 | MTR_5g026210 | 45.902 | 244 | 131 | 1 | 85 | 327 | 217 | 460 | 2.91e-78 | 255 |
| MS.gene35779.t1 | MTR_6g477770 | 48.387 | 93 | 48 | 0 | 86 | 178 | 106 | 198 | 8.88e-29 | 114 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35779.t1 | AT2G32290 | 66.667 | 519 | 170 | 2 | 50 | 567 | 42 | 558 | 0.0 | 738 |
| MS.gene35779.t1 | AT4G15210 | 62.777 | 497 | 184 | 1 | 73 | 568 | 1 | 497 | 0.0 | 689 |
| MS.gene35779.t1 | AT4G15210 | 63.739 | 444 | 161 | 0 | 125 | 568 | 1 | 444 | 0.0 | 635 |
| MS.gene35779.t1 | AT4G15210 | 63.739 | 444 | 161 | 0 | 125 | 568 | 1 | 444 | 0.0 | 635 |
| MS.gene35779.t1 | AT4G15210 | 66.585 | 410 | 136 | 1 | 73 | 481 | 1 | 410 | 0.0 | 603 |
| MS.gene35779.t1 | AT4G00490 | 52.523 | 436 | 197 | 4 | 86 | 517 | 95 | 524 | 4.18e-164 | 479 |
| MS.gene35779.t1 | AT4G17090 | 51.039 | 433 | 201 | 4 | 86 | 515 | 86 | 510 | 1.60e-158 | 465 |
| MS.gene35779.t1 | AT3G23920 | 49.351 | 462 | 220 | 7 | 86 | 535 | 106 | 565 | 5.39e-158 | 465 |
| MS.gene35779.t1 | AT2G45880 | 46.804 | 438 | 221 | 5 | 85 | 517 | 247 | 677 | 3.58e-138 | 418 |
| MS.gene35779.t1 | AT5G45300 | 41.284 | 436 | 248 | 4 | 85 | 518 | 252 | 681 | 7.23e-118 | 365 |
| MS.gene35779.t1 | AT5G45300 | 41.284 | 436 | 248 | 4 | 85 | 518 | 254 | 683 | 8.14e-118 | 365 |
| MS.gene35779.t1 | AT5G45300 | 41.284 | 436 | 248 | 4 | 85 | 518 | 268 | 697 | 1.19e-117 | 365 |
| MS.gene35779.t1 | AT5G55700 | 40.848 | 448 | 241 | 9 | 86 | 518 | 92 | 530 | 1.77e-110 | 341 |
| MS.gene35779.t1 | AT5G55700 | 41.570 | 344 | 181 | 8 | 186 | 518 | 33 | 367 | 9.41e-84 | 266 |
| MS.gene35779.t1 | AT5G18670 | 31.223 | 458 | 295 | 8 | 60 | 515 | 62 | 501 | 2.31e-76 | 252 |
Find 126 sgRNAs with CRISPR-Local
Find 281 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCTTGCTTTGTTCTTGAATT+TGG | 0.098697 | 2.1:+13009746 | None:intergenic |
| GATAATAAACCTTTCTTTAA+TGG | 0.136465 | 2.1:-13007709 | MS.gene35779:CDS |
| TTTCCATTCCATTACCTAAA+TGG | 0.151036 | 2.1:-13007819 | MS.gene35779:CDS |
| AGAATATCCAATGGAATCTT+TGG | 0.238118 | 2.1:+13005347 | None:intergenic |
| GTCTAGCATTTAGAAGAATT+TGG | 0.238931 | 2.1:+13005646 | None:intergenic |
| CAAACAACGTTCTGTGTCTT+TGG | 0.254164 | 2.1:-13009687 | MS.gene35779:CDS |
| ACCAAATGGTGTTAACAAAA+AGG | 0.258115 | 2.1:-13005625 | MS.gene35779:CDS |
| CCAACTTCAAGTACCCATTT+AGG | 0.283522 | 2.1:+13007805 | None:intergenic |
| CTCTGTTTGGTAAGTTCCCT+TGG | 0.285933 | 2.1:+13006713 | None:intergenic |
| ACACCAATAGTTCAGGTATC+AGG | 0.292663 | 2.1:-13007759 | MS.gene35779:CDS |
| ACTCCATACATCCTTAGTTT+TGG | 0.297957 | 2.1:+13005597 | None:intergenic |
| AAAATTTCCCTTTCTCTGTT+TGG | 0.305976 | 2.1:+13006700 | None:intergenic |
| TTAGATGACCCTGCATTATT+AGG | 0.311220 | 2.1:+13006768 | None:intergenic |
| AAGTTCCTGCGCACAACTTT+TGG | 0.311792 | 2.1:+13005978 | None:intergenic |
| CATCAATGTGGAGGGAATAT+TGG | 0.317025 | 2.1:-13007850 | MS.gene35779:CDS |
| GGCTGGGTATTTCCTGGTAT+TGG | 0.319528 | 2.1:-13007181 | MS.gene35779:CDS |
| GTCCTTGTTTCAACTGGTTC+AGG | 0.328216 | 2.1:-13007908 | MS.gene35779:CDS |
| TAATGGAAGAACTCCCATTC+AGG | 0.337236 | 2.1:-13007692 | MS.gene35779:intron |
| GTTACTTCAGACCATGGATA+TGG | 0.352538 | 2.1:+13005299 | None:intergenic |
| TAGTTCAGGTATCAGGAATA+AGG | 0.355369 | 2.1:-13007752 | MS.gene35779:CDS |
| ATTCCTGATACCTGAACTAT+TGG | 0.356194 | 2.1:+13007756 | None:intergenic |
| GTGTAATGATAGTATTTCTC+TGG | 0.363750 | 2.1:+13005392 | None:intergenic |
| ATGAATATTATCAAATTTGA+AGG | 0.373538 | 2.1:+13009724 | None:intergenic |
| AGAGAGAACCTTGAAGTTGC+TGG | 0.383951 | 2.1:-13005708 | MS.gene35779:CDS |
| TTATTAGGCAGCTCCCATTC+AGG | 0.387793 | 2.1:+13006783 | None:intergenic |
| ACTGGGAGCATCACATATAT+TGG | 0.390705 | 2.1:+13008172 | None:intergenic |
| ATATAGGTCCTTGTTTCAAC+TGG | 0.393657 | 2.1:-13007914 | MS.gene35779:CDS |
| TTCCATTCCATTACCTAAAT+GGG | 0.397927 | 2.1:-13007818 | MS.gene35779:CDS |
| CATGCTGCAGAGCTTACTTC+AGG | 0.404999 | 2.1:-13006120 | MS.gene35779:CDS |
| GGTACATAATTTGCCAGCAT+TGG | 0.410531 | 2.1:+13008193 | None:intergenic |
| CTTCTAAATGCTAGACCAAA+TGG | 0.415851 | 2.1:-13005639 | MS.gene35779:CDS |
| CTATTGGTGTAAAAGATATC+AGG | 0.420283 | 2.1:+13007772 | None:intergenic |
| TCAAGTACCCATTTAGGTAA+TGG | 0.420866 | 2.1:+13007811 | None:intergenic |
| TCTCTAGGCTGGGTATTTCC+TGG | 0.424224 | 2.1:-13007187 | MS.gene35779:CDS |
| TGATAGTATTTCTCTGGGTC+TGG | 0.428002 | 2.1:+13005398 | None:intergenic |
| GCAACCTAGGAATACTTTGT+TGG | 0.430514 | 2.1:+13006620 | None:intergenic |
| CTACGAGCAGCAGGTGTTGA+TGG | 0.431754 | 2.1:-13008003 | MS.gene35779:CDS |
| TACACATGGTGATGAAATCT+TGG | 0.441517 | 2.1:-13006649 | MS.gene35779:CDS |
| GGAGTTCTTCCATTAAAGAA+AGG | 0.443893 | 2.1:+13007700 | None:intergenic |
| CTAACTTCACTTTGCAACCT+AGG | 0.444418 | 2.1:+13006607 | None:intergenic |
| TGCTTATTAGCTAACCTGAA+TGG | 0.456713 | 2.1:+13007678 | None:intergenic |
| CAAGAGCAGGCCATCCTGAA+TGG | 0.457085 | 2.1:-13006797 | MS.gene35779:CDS |
| GCTTATTAGCTAACCTGAAT+GGG | 0.457137 | 2.1:+13007679 | None:intergenic |
| AGCAGGTGTTGATGGAGTTA+TGG | 0.457290 | 2.1:-13007995 | MS.gene35779:CDS |
| GATAAAATGGTTACCTCTGC+AGG | 0.461646 | 2.1:+13009635 | None:intergenic |
| ATGGAGTTATGGTTGATGTC+TGG | 0.466921 | 2.1:-13007984 | MS.gene35779:CDS |
| CTGAAGGAGCTACGAGCAGC+AGG | 0.467025 | 2.1:-13008012 | MS.gene35779:CDS |
| TCGTATGTTGAAGGAACAAT+TGG | 0.472772 | 2.1:+13008220 | None:intergenic |
| ATGTCTTGAGATGAGAAATT+CGG | 0.474129 | 2.1:-13006016 | MS.gene35779:CDS |
| CTTATGCAGAATCTCTAGGC+TGG | 0.476981 | 2.1:-13007198 | MS.gene35779:CDS |
| TGCGCAGGAACTTGTTCAGC+AGG | 0.478088 | 2.1:-13005968 | MS.gene35779:intron |
| GGAACTTACCAAACAGAGAA+AGG | 0.480151 | 2.1:-13006708 | MS.gene35779:CDS |
| AGGGTCCTCAGCAGTATGAT+TGG | 0.482307 | 2.1:-13007942 | MS.gene35779:CDS |
| CTATCATTACACAGTCCCTA+TGG | 0.483589 | 2.1:-13005381 | MS.gene35779:CDS |
| ATGAGTGTTAATGAAGCTAC+TGG | 0.483626 | 2.1:-13005272 | MS.gene35779:CDS |
| GAGAGAACCTTGAAGTTGCT+GGG | 0.485365 | 2.1:-13005707 | MS.gene35779:CDS |
| AGTTATGGTTGATGTCTGGT+GGG | 0.485373 | 2.1:-13007980 | MS.gene35779:CDS |
| AAAGAGGCTGCAACAAGAGC+AGG | 0.485937 | 2.1:-13006810 | MS.gene35779:CDS |
| GAGTTATGGTTGATGTCTGG+TGG | 0.486306 | 2.1:-13007981 | MS.gene35779:CDS |
| GAAGTAGGACTTGGCCCTGC+TGG | 0.494381 | 2.1:-13007238 | MS.gene35779:CDS |
| CCTCCAAAACTAAGGATGTA+TGG | 0.500922 | 2.1:-13005600 | MS.gene35779:CDS |
| AAAAGGGCCCTCCAAAACTA+AGG | 0.504860 | 2.1:-13005608 | MS.gene35779:CDS |
| CCTAGAGATTCTGCATAAGA+AGG | 0.509260 | 2.1:+13007202 | None:intergenic |
| AAGAGCAGGCCATCCTGAAT+GGG | 0.510122 | 2.1:-13006796 | MS.gene35779:CDS |
| TGGGAGCTGCCTAATAATGC+AGG | 0.510842 | 2.1:-13006777 | MS.gene35779:CDS |
| CCTAAATGGGTACTTGAAGT+TGG | 0.512349 | 2.1:-13007805 | MS.gene35779:CDS |
| GATTACAAACGACAATGTCT+TGG | 0.515941 | 2.1:-13008061 | MS.gene35779:CDS |
| AGTATGATTGGTCAGCATAT+AGG | 0.517008 | 2.1:-13007930 | MS.gene35779:CDS |
| GTCAAAACCAAAGATTCCAT+TGG | 0.526146 | 2.1:-13005354 | MS.gene35779:CDS |
| CCTTCTTATGCAGAATCTCT+AGG | 0.526590 | 2.1:-13007202 | MS.gene35779:CDS |
| GAAGCCAACAAAGTATTCCT+AGG | 0.529512 | 2.1:-13006624 | MS.gene35779:CDS |
| GGAATGTATTTCACTTGGTG+TGG | 0.536095 | 2.1:-13007731 | MS.gene35779:CDS |
| ATTGGATCTTCGTATGTTGA+AGG | 0.538202 | 2.1:+13008211 | None:intergenic |
| GTGGGGTATAGTAGAATCAA+AGG | 0.538270 | 2.1:-13007962 | MS.gene35779:CDS |
| GAACTTACCAAACAGAGAAA+GGG | 0.543731 | 2.1:-13006707 | MS.gene35779:CDS |
| AGTCACATACCTACGTTTGA+CGG | 0.548774 | 2.1:-13005577 | MS.gene35779:CDS |
| TCTCTCTCCACCCTCCACTC+AGG | 0.551609 | 2.1:+13005724 | None:intergenic |
| TGATTACAGGTCCTGAGTGG+AGG | 0.553219 | 2.1:-13005735 | MS.gene35779:intron |
| AACAGATTGCTGGAATCCAC+TGG | 0.553445 | 2.1:-13006161 | MS.gene35779:intron |
| TACCCATTTAGGTAATGGAA+TGG | 0.556693 | 2.1:+13007816 | None:intergenic |
| GATTACAGGTCCTGAGTGGA+GGG | 0.557755 | 2.1:-13005734 | MS.gene35779:intron |
| TAACCTTCACTATCATACCT+TGG | 0.562886 | 2.1:+13005672 | None:intergenic |
| ATGGATACCGTCCCGTGGCA+AGG | 0.567231 | 2.1:-13006074 | MS.gene35779:CDS |
| AGAAGCCAAAAGTTGTGCGC+AGG | 0.573900 | 2.1:-13005983 | MS.gene35779:CDS |
| TCTTCAAGCTGATTTCAAAG+AGG | 0.575694 | 2.1:-13006826 | MS.gene35779:CDS |
| GTTATGGTTGATGTCTGGTG+GGG | 0.576228 | 2.1:-13007979 | MS.gene35779:CDS |
| AACATACGAAGATCCAATGC+TGG | 0.577269 | 2.1:-13008206 | MS.gene35779:CDS |
| TTATGCAGAATCTCTAGGCT+GGG | 0.578110 | 2.1:-13007197 | MS.gene35779:CDS |
| CTACTGATAGACATTGAAGT+AGG | 0.580486 | 2.1:-13007253 | MS.gene35779:CDS |
| GGATATCTGAGTTCTCCAGC+AGG | 0.582473 | 2.1:+13007223 | None:intergenic |
| ATATCCATGGTCTGAAGTAA+CGG | 0.582490 | 2.1:-13005297 | MS.gene35779:CDS |
| TGTAATGATAGTATTTCTCT+GGG | 0.589768 | 2.1:+13005393 | None:intergenic |
| ATCCTGAACCAGTTGAAACA+AGG | 0.590334 | 2.1:+13007906 | None:intergenic |
| ATGTCATTTCATCAATGTGG+AGG | 0.591453 | 2.1:-13007859 | MS.gene35779:CDS |
| CTGGGGAAAATGCACTTCCA+AGG | 0.595962 | 2.1:-13005689 | MS.gene35779:CDS |
| CGAGCGAACATCCTTGCCAC+GGG | 0.597519 | 2.1:+13006063 | None:intergenic |
| TGCAATTGCTGAACCTGCAG+AGG | 0.598516 | 2.1:-13009648 | MS.gene35779:intron |
| CTGAAGTAAGCTCTGCAGCA+TGG | 0.601612 | 2.1:+13006121 | None:intergenic |
| AATAAGGAATGTATTTCACT+TGG | 0.602381 | 2.1:-13007736 | MS.gene35779:CDS |
| AAGCAGTGAAGCCATATCCA+TGG | 0.615424 | 2.1:-13005310 | MS.gene35779:CDS |
| TGTCATTTCATCAATGTGGA+GGG | 0.615775 | 2.1:-13007858 | MS.gene35779:CDS |
| TGGGGTATAGTAGAATCAAA+GGG | 0.616212 | 2.1:-13007961 | MS.gene35779:CDS |
| TACAGGTCCTGAGTGGAGGG+TGG | 0.618532 | 2.1:-13005731 | MS.gene35779:intron |
| ATAGACATTGAAGTAGGACT+TGG | 0.622597 | 2.1:-13007247 | MS.gene35779:CDS |
| TACAACTTAAGTGATAGAGA+TGG | 0.622813 | 2.1:-13006093 | MS.gene35779:CDS |
| CTTCCAAGGTATGATAGTGA+AGG | 0.626762 | 2.1:-13005675 | MS.gene35779:CDS |
| ATTACACAGTCCCTATGGAA+AGG | 0.629072 | 2.1:-13005376 | MS.gene35779:CDS |
| AGAGAACCTTGAAGTTGCTG+GGG | 0.631483 | 2.1:-13005706 | MS.gene35779:CDS |
| ACATTAAATTCTCCAATACC+AGG | 0.631717 | 2.1:+13007169 | None:intergenic |
| TAGGCAGCTCCCATTCAGGA+TGG | 0.634532 | 2.1:+13006787 | None:intergenic |
| TCTAACAAATTGCTTACACA+TGG | 0.637957 | 2.1:-13006663 | MS.gene35779:CDS |
| CTATACGTGTAGATAGAGCA+AGG | 0.639367 | 2.1:-13009772 | MS.gene35779:CDS |
| CGAACATCCTTGCCACGGGA+CGG | 0.640912 | 2.1:+13006067 | None:intergenic |
| TCGAGCGAACATCCTTGCCA+CGG | 0.649016 | 2.1:+13006062 | None:intergenic |
| ATAATGTCATTTCATCAATG+TGG | 0.649124 | 2.1:-13007862 | MS.gene35779:CDS |
| AAAACTCGAGAAACAGCTGA+AGG | 0.651352 | 2.1:-13008028 | MS.gene35779:CDS |
| ATATCCGTTACTTCAGACCA+TGG | 0.651609 | 2.1:+13005293 | None:intergenic |
| GCTTCAAGAAGAATATCCAA+TGG | 0.652062 | 2.1:+13005338 | None:intergenic |
| ATTTGATTACAGGTCCTGAG+TGG | 0.659107 | 2.1:-13005738 | MS.gene35779:intron |
| GGGAGCTGCCTAATAATGCA+GGG | 0.662617 | 2.1:-13006776 | MS.gene35779:CDS |
| GCTGACCAATCATACTGCTG+AGG | 0.670708 | 2.1:+13007937 | None:intergenic |
| AATTCTAGTTCATAACACAA+AGG | 0.694982 | 2.1:+13005121 | None:intergenic |
| TAGAGATGGATACCGTCCCG+TGG | 0.696239 | 2.1:-13006079 | MS.gene35779:CDS |
| GATATCTGAGTTCTCCAGCA+GGG | 0.705382 | 2.1:+13007224 | None:intergenic |
| ATAGTTCTTCCGTCAAACGT+AGG | 0.709716 | 2.1:+13005568 | None:intergenic |
| AGATTGCTGGAATCCACTGG+TGG | 0.714797 | 2.1:-13006158 | MS.gene35779:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATGAATTTCTAATATAAA+AGG | + | chr2.1:13006464-13006483 | None:intergenic | 10.0% |
| !!! | AAATTATTTCTTTCAATATA+TGG | - | chr2.1:13008723-13008742 | MS.gene35779:intron | 10.0% |
| !!! | ATTAGAAATTCATATTTTTT+GGG | - | chr2.1:13006469-13006488 | MS.gene35779:intron | 10.0% |
| !!! | GAAAGATAAATATTTTTTTA+AGG | + | chr2.1:13006226-13006245 | None:intergenic | 10.0% |
| !!! | GATTTTTATGATATTTATTT+TGG | + | chr2.1:13005485-13005504 | None:intergenic | 10.0% |
| !!! | TATTAGAAATTCATATTTTT+TGG | - | chr2.1:13006468-13006487 | MS.gene35779:intron | 10.0% |
| !!! | TGCTTAATAATTTTTTTATA+TGG | - | chr2.1:13007577-13007596 | MS.gene35779:intron | 10.0% |
| !! | ATAAATATCATAAAAATCCA+AGG | - | chr2.1:13005487-13005506 | MS.gene35779:intron | 15.0% |
| !! | ATAATAGACTAATAGTAATA+AGG | - | chr2.1:13005835-13005854 | MS.gene35779:intron | 15.0% |
| !! | ATGAATATTATCAAATTTGA+AGG | + | chr2.1:13005237-13005256 | None:intergenic | 15.0% |
| !! | ATGATCATTATAATTTGAAA+AGG | + | chr2.1:13006325-13006344 | None:intergenic | 15.0% |
| !! | ATGATTGATCAATAATAAAA+TGG | - | chr2.1:13009786-13009805 | MS.gene35779:CDS | 15.0% |
| !! | TAAATGAGAAGTTAAAAAAA+AGG | - | chr2.1:13005906-13005925 | MS.gene35779:intron | 15.0% |
| !! | TAATAGACTAATAGTAATAA+GGG | - | chr2.1:13005836-13005855 | MS.gene35779:intron | 15.0% |
| !! | TATCATATTTGTTTAGTTAT+TGG | - | chr2.1:13007610-13007629 | MS.gene35779:intron | 15.0% |
| !! | TATTTCCTATTTATAGTTAA+TGG | - | chr2.1:13007316-13007335 | MS.gene35779:CDS | 15.0% |
| !! | TGATCATTATAATTTGAAAA+GGG | + | chr2.1:13006324-13006343 | None:intergenic | 15.0% |
| !! | TGATTGATCAATAATAAAAT+GGG | - | chr2.1:13009787-13009806 | MS.gene35779:CDS | 15.0% |
| !! | TTAAAGAATAATACAAGAAA+AGG | + | chr2.1:13006190-13006209 | None:intergenic | 15.0% |
| !! | TTATGTTAGAACTATATATT+TGG | + | chr2.1:13006693-13006712 | None:intergenic | 15.0% |
| !!! | AGAATTTTTTTGTAACATTA+AGG | - | chr2.1:13007524-13007543 | MS.gene35779:intron | 15.0% |
| !!! | ATATATCAAAATTTTGTTTC+TGG | + | chr2.1:13009417-13009436 | None:intergenic | 15.0% |
| !!! | TATAATTATTTGCTACTATA+TGG | + | chr2.1:13005361-13005380 | None:intergenic | 15.0% |
| !! | AAATGGAACATATATGTATA+TGG | + | chr2.1:13006842-13006861 | None:intergenic | 20.0% |
| !! | AAATTAAAATCAGAGGAATA+TGG | - | chr2.1:13005976-13005995 | MS.gene35779:CDS | 20.0% |
| !! | AACATGAAAATTAAAATCAG+AGG | - | chr2.1:13005969-13005988 | MS.gene35779:CDS | 20.0% |
| !! | AATGGAACATATATGTATAT+GGG | + | chr2.1:13006841-13006860 | None:intergenic | 20.0% |
| !! | ACAAAACAAGACAATTAAAA+AGG | - | chr2.1:13006273-13006292 | MS.gene35779:intron | 20.0% |
| !! | AGTACATAAAGATTGAAAAT+TGG | + | chr2.1:13008079-13008098 | None:intergenic | 20.0% |
| !! | CAAAAAAATTCTGTCAAATA+CGG | + | chr2.1:13007516-13007535 | None:intergenic | 20.0% |
| !! | GAAAGGAAAATATGATAAAA+TGG | + | chr2.1:13005339-13005358 | None:intergenic | 20.0% |
| !! | GAATTCCATTAACTATAAAT+AGG | + | chr2.1:13007324-13007343 | None:intergenic | 20.0% |
| !! | GATAATAAACCTTTCTTTAA+TGG | - | chr2.1:13007249-13007268 | MS.gene35779:CDS | 20.0% |
| !! | TTGACAAAGTTTATTGAAAA+CGG | - | chr2.1:13007403-13007422 | MS.gene35779:intron | 20.0% |
| !!! | ATTGCACATTTATTTTTGAA+GGG | + | chr2.1:13006527-13006546 | None:intergenic | 20.0% |
| !!! | CATGAATTAATATTTTTGAG+AGG | - | chr2.1:13006342-13006361 | MS.gene35779:intron | 20.0% |
| !!! | GTGTCAAACTTTTTTATATT+AGG | - | chr2.1:13009178-13009197 | MS.gene35779:intron | 20.0% |
| !!! | TAATTTGTGTATTTGATTAC+AGG | - | chr2.1:13009210-13009229 | MS.gene35779:intron | 20.0% |
| !!! | TATGTACTCTTTTTTATTAC+TGG | + | chr2.1:13005678-13005697 | None:intergenic | 20.0% |
| !!! | TATTGCACATTTATTTTTGA+AGG | + | chr2.1:13006528-13006547 | None:intergenic | 20.0% |
| ! | AAATAGGTGATTAATTACGT+TGG | + | chr2.1:13008645-13008664 | None:intergenic | 25.0% |
| ! | AACTGAAAATGTGAATGAAA+AGG | - | chr2.1:13009761-13009780 | MS.gene35779:CDS | 25.0% |
| ! | AATAAGGAATGTATTTCACT+TGG | - | chr2.1:13007222-13007241 | MS.gene35779:CDS | 25.0% |
| ! | ATAATAGTGTAATCACTTAC+TGG | + | chr2.1:13006807-13006826 | None:intergenic | 25.0% |
| ! | ATTCATAAAAAACAGATTGC+TGG | - | chr2.1:13008787-13008806 | MS.gene35779:intron | 25.0% |
| ! | GATCAATAATAAAATGGGAA+AGG | - | chr2.1:13009792-13009811 | MS.gene35779:CDS | 25.0% |
| ! | TAAAAATCCAAGGTTGAATT+TGG | - | chr2.1:13005497-13005516 | MS.gene35779:intron | 25.0% |
| ! | TAATAGTGTAATCACTTACT+GGG | + | chr2.1:13006806-13006825 | None:intergenic | 25.0% |
| ! | TAGTTAAAAAAATTGCTGCA+CGG | - | chr2.1:13007956-13007975 | MS.gene35779:CDS | 25.0% |
| ! | TCATGAATAGAAACATGTTA+TGG | + | chr2.1:13009091-13009110 | None:intergenic | 25.0% |
| ! | TCATTATAATTTGAAAAGGG+AGG | + | chr2.1:13006321-13006340 | None:intergenic | 25.0% |
| ! | TGTAATGATAGTATTTCTCT+GGG | + | chr2.1:13009568-13009587 | None:intergenic | 25.0% |
| ! | TTAGCATGTGAAATTATTGA+AGG | + | chr2.1:13006388-13006407 | None:intergenic | 25.0% |
| !! | ATAATGTCATTTCATCAATG+TGG | - | chr2.1:13007096-13007115 | MS.gene35779:intron | 25.0% |
| !! | TTATTTGCTACTATATGGAA+AGG | + | chr2.1:13005356-13005375 | None:intergenic | 25.0% |
| !! | TTCATTCACATTTTCAGTTT+CGG | + | chr2.1:13009760-13009779 | None:intergenic | 25.0% |
| !!! | AAGGGAAATTTTTTCTTACA+TGG | - | chr2.1:13008269-13008288 | MS.gene35779:intron | 25.0% |
| !!! | GTTTGTGAATTTTTTGCTAT+AGG | - | chr2.1:13007814-13007833 | MS.gene35779:CDS | 25.0% |
| !!! | TAGTTCTAACATAACAGTTT+TGG | - | chr2.1:13006699-13006718 | MS.gene35779:CDS | 25.0% |
| !!! | TTCTTCTTTTTTCTAGTACA+TGG | + | chr2.1:13006556-13006575 | None:intergenic | 25.0% |
| !!! | TTGCACATTTATTTTTGAAG+GGG | + | chr2.1:13006526-13006545 | None:intergenic | 25.0% |
| AAAAGTGAAGACCAAAAGTT+GGG | + | chr2.1:13005538-13005557 | None:intergenic | 30.0% | |
| AAAATTTCCCTTTCTCTGTT+TGG | + | chr2.1:13008261-13008280 | None:intergenic | 30.0% | |
| AACTTGTAATATTTGTGCTG+TGG | - | chr2.1:13005564-13005583 | MS.gene35779:CDS | 30.0% | |
| ACATTAAATTCTCCAATACC+AGG | + | chr2.1:13007792-13007811 | None:intergenic | 30.0% | |
| AGAATATCCAATGGAATCTT+TGG | + | chr2.1:13009614-13009633 | None:intergenic | 30.0% | |
| ATCCGAATCCAAAACAAAAA+GGG | - | chr2.1:13007996-13008015 | MS.gene35779:CDS | 30.0% | |
| ATGTCTTGAGATGAGAAATT+CGG | - | chr2.1:13008942-13008961 | MS.gene35779:intron | 30.0% | |
| ATTTGATCACCTGAAAATTG+TGG | + | chr2.1:13008521-13008540 | None:intergenic | 30.0% | |
| CTATTGGTGTAAAAGATATC+AGG | + | chr2.1:13007189-13007208 | None:intergenic | 30.0% | |
| CTGAAAAATTCTGTAGATTC+AGG | + | chr2.1:13008223-13008242 | None:intergenic | 30.0% | |
| GTCTAGCATTTAGAAGAATT+TGG | + | chr2.1:13009315-13009334 | None:intergenic | 30.0% | |
| GTGTAATGATAGTATTTCTC+TGG | + | chr2.1:13009569-13009588 | None:intergenic | 30.0% | |
| GTTAAAACCAAATTCAACCT+TGG | + | chr2.1:13005507-13005526 | None:intergenic | 30.0% | |
| GTTCCATTTCAAAAATGTGT+TGG | - | chr2.1:13006853-13006872 | MS.gene35779:intron | 30.0% | |
| GTTGTTAATGCAGTTCAAAT+TGG | - | chr2.1:13008453-13008472 | MS.gene35779:intron | 30.0% | |
| TAAAACGCAATTGCATATGA+GGG | + | chr2.1:13006065-13006084 | None:intergenic | 30.0% | |
| TACAACTTAAGTGATAGAGA+TGG | - | chr2.1:13008865-13008884 | MS.gene35779:intron | 30.0% | |
| TACATGTAGATTGTAGAGTT+TGG | + | chr2.1:13007380-13007399 | None:intergenic | 30.0% | |
| TATCCGAATCCAAAACAAAA+AGG | - | chr2.1:13007995-13008014 | MS.gene35779:CDS | 30.0% | |
| TCTAACAAATTGCTTACACA+TGG | - | chr2.1:13008295-13008314 | MS.gene35779:intron | 30.0% | |
| TTAAAACGCAATTGCATATG+AGG | + | chr2.1:13006066-13006085 | None:intergenic | 30.0% | |
| TTCCATTCCATTACCTAAAT+GGG | - | chr2.1:13007140-13007159 | MS.gene35779:intron | 30.0% | |
| TTTCCATTCCATTACCTAAA+TGG | - | chr2.1:13007139-13007158 | MS.gene35779:intron | 30.0% | |
| ! | ACCAAATGGTGTTAACAAAA+AGG | - | chr2.1:13009333-13009352 | MS.gene35779:intron | 30.0% |
| ! | ATCCTATTGCAAACTTTTCT+TGG | + | chr2.1:13006668-13006687 | None:intergenic | 30.0% |
| ! | ATCTTTTACACCAATAGTTC+AGG | - | chr2.1:13007192-13007211 | MS.gene35779:CDS | 30.0% |
| ! | CCAAATGGTGTTAACAAAAA+GGG | - | chr2.1:13009334-13009353 | MS.gene35779:intron | 30.0% |
| ! | CGTTGTTAACCATAATTTTC+AGG | + | chr2.1:13008561-13008580 | None:intergenic | 30.0% |
| ! | GTTTTCAACACAATGTTATG+TGG | + | chr2.1:13007855-13007874 | None:intergenic | 30.0% |
| !! | AATCGAAACCCTTTTTGTTT+TGG | + | chr2.1:13008007-13008026 | None:intergenic | 30.0% |
| !! | ACAGAATTTTTCAGATCCAA+GGG | - | chr2.1:13008229-13008248 | MS.gene35779:intron | 30.0% |
| !! | GAACCAACACATTTTTGAAA+TGG | + | chr2.1:13006859-13006878 | None:intergenic | 30.0% |
| !! | TACAGAATTTTTCAGATCCA+AGG | - | chr2.1:13008228-13008247 | MS.gene35779:intron | 30.0% |
| !! | TGGTTGACGAAGTTATTTTA+GGG | - | chr2.1:13008591-13008610 | MS.gene35779:intron | 30.0% |
| !!! | AACCCTTTTTGTTTTGGATT+CGG | + | chr2.1:13008001-13008020 | None:intergenic | 30.0% |
| !!! | GAAGAGTTTTAGAGAGAATA+TGG | - | chr2.1:13007662-13007681 | MS.gene35779:intron | 30.0% |
| !!! | GTGCAGCAATTTTTTTAACT+AGG | + | chr2.1:13007957-13007976 | None:intergenic | 30.0% |
| !!! | GTGTTTTGGCACATATATTA+TGG | - | chr2.1:13006606-13006625 | MS.gene35779:CDS | 30.0% |
| !!! | TTCACGAAAGGTATTTTCAA+AGG | - | chr2.1:13005153-13005172 | MS.gene35779:intron | 30.0% |
| !!! | TTTTTTTTACGACCGAACTT+AGG | + | chr2.1:13008706-13008725 | None:intergenic | 30.0% |
| AAAGTGAAGACCAAAAGTTG+GGG | + | chr2.1:13005537-13005556 | None:intergenic | 35.0% | |
| AACTTCGTCAACCACAAATT+TGG | + | chr2.1:13008585-13008604 | None:intergenic | 35.0% | |
| AATCAAAAGCGAAATTCTGC+AGG | - | chr2.1:13009529-13009548 | MS.gene35779:intron | 35.0% | |
| AATTTGAAAAGGGAGGAAAG+AGG | + | chr2.1:13006314-13006333 | None:intergenic | 35.0% | |
| ACATCAAAAACCTTGACATC+AGG | + | chr2.1:13007455-13007474 | None:intergenic | 35.0% | |
| ACTTTACACGTTAATCACTG+TGG | + | chr2.1:13006030-13006049 | None:intergenic | 35.0% | |
| AGAAAAATCTGTAGAGCAAG+AGG | - | chr2.1:13006572-13006591 | MS.gene35779:intron | 35.0% | |
| AGCCAAGAAAAGTTTGCAAT+AGG | - | chr2.1:13006663-13006682 | MS.gene35779:CDS | 35.0% | |
| AGTTGCACACCTGAAAATTA+TGG | - | chr2.1:13008549-13008568 | MS.gene35779:intron | 35.0% | |
| ATACACATACACCTCTCATA+AGG | + | chr2.1:13005764-13005783 | None:intergenic | 35.0% | |
| ATACACCTCTCATAAGGATT+CGG | + | chr2.1:13005758-13005777 | None:intergenic | 35.0% | |
| ATAGACATTGAAGTAGGACT+TGG | - | chr2.1:13007711-13007730 | MS.gene35779:CDS | 35.0% | |
| ATATTCCGAATCCTTATGAG+AGG | - | chr2.1:13005750-13005769 | MS.gene35779:intron | 35.0% | |
| ATGAGTGTTAATGAAGCTAC+TGG | - | chr2.1:13009686-13009705 | MS.gene35779:CDS | 35.0% | |
| ATTCAGGAAATATGAGAGAG+AGG | - | chr2.1:13005645-13005664 | MS.gene35779:CDS | 35.0% | |
| ATTCCTGATACCTGAACTAT+TGG | + | chr2.1:13007205-13007224 | None:intergenic | 35.0% | |
| ATTGGATCTTCGTATGTTGA+AGG | + | chr2.1:13006750-13006769 | None:intergenic | 35.0% | |
| CTACTGATAGACATTGAAGT+AGG | - | chr2.1:13007705-13007724 | MS.gene35779:CDS | 35.0% | |
| CTTCTAAATGCTAGACCAAA+TGG | - | chr2.1:13009319-13009338 | MS.gene35779:intron | 35.0% | |
| GAAAAAGATGCATGCTAATC+AGG | - | chr2.1:13009450-13009469 | MS.gene35779:intron | 35.0% | |
| GAAAAGTGAAGACCAAAAGT+TGG | + | chr2.1:13005539-13005558 | None:intergenic | 35.0% | |
| GAACTTACCAAACAGAGAAA+GGG | - | chr2.1:13008251-13008270 | MS.gene35779:intron | 35.0% | |
| GATTACAAACGACAATGTCT+TGG | - | chr2.1:13006897-13006916 | MS.gene35779:intron | 35.0% | |
| GCTTATTAGCTAACCTGAAT+GGG | + | chr2.1:13007282-13007301 | None:intergenic | 35.0% | |
| GCTTCAAGAAGAATATCCAA+TGG | + | chr2.1:13009623-13009642 | None:intergenic | 35.0% | |
| GGAGTTCTTCCATTAAAGAA+AGG | + | chr2.1:13007261-13007280 | None:intergenic | 35.0% | |
| GTCAAAACCAAAGATTCCAT+TGG | - | chr2.1:13009604-13009623 | MS.gene35779:intron | 35.0% | |
| GTCATGTGTCGAAAAACAAA+AGG | - | chr2.1:13005938-13005957 | MS.gene35779:intron | 35.0% | |
| GTGGTTAACACAGTTCAAAT+AGG | + | chr2.1:13008661-13008680 | None:intergenic | 35.0% | |
| GTGTTGAAAACAAATCGACT+CGG | - | chr2.1:13007864-13007883 | MS.gene35779:CDS | 35.0% | |
| GTTAACAACGTCCAAATTTG+TGG | - | chr2.1:13008571-13008590 | MS.gene35779:intron | 35.0% | |
| GTTAATGCAGTTCAAATTGG+TGG | - | chr2.1:13008456-13008475 | MS.gene35779:intron | 35.0% | |
| TAACCTTCACTATCATACCT+TGG | + | chr2.1:13009289-13009308 | None:intergenic | 35.0% | |
| TAGTTCAGGTATCAGGAATA+AGG | - | chr2.1:13007206-13007225 | MS.gene35779:CDS | 35.0% | |
| TCAAGTACCCATTTAGGTAA+TGG | + | chr2.1:13007150-13007169 | None:intergenic | 35.0% | |
| TCGTATGTTGAAGGAACAAT+TGG | + | chr2.1:13006741-13006760 | None:intergenic | 35.0% | |
| TCTCATAAGGATTCGGAATA+TGG | + | chr2.1:13005751-13005770 | None:intergenic | 35.0% | |
| TGATTTCGCGATGTTACATT+AGG | + | chr2.1:13009135-13009154 | None:intergenic | 35.0% | |
| TGCTTATTAGCTAACCTGAA+TGG | + | chr2.1:13007283-13007302 | None:intergenic | 35.0% | |
| TGGGGTATAGTAGAATCAAA+GGG | - | chr2.1:13006997-13007016 | MS.gene35779:intron | 35.0% | |
| TGTAATATTTGTGCTGTGGT+TGG | - | chr2.1:13005568-13005587 | MS.gene35779:CDS | 35.0% | |
| TTAGATGACCCTGCATTATT+AGG | + | chr2.1:13008193-13008212 | None:intergenic | 35.0% | |
| ! | AACATAATGTCCCCAACTTT+TGG | - | chr2.1:13005524-13005543 | MS.gene35779:CDS | 35.0% |
| ! | ACTCCATACATCCTTAGTTT+TGG | + | chr2.1:13009364-13009383 | None:intergenic | 35.0% |
| ! | AGTATGATTGGTCAGCATAT+AGG | - | chr2.1:13007028-13007047 | MS.gene35779:intron | 35.0% |
| ! | ATATAGGTCCTTGTTTCAAC+TGG | - | chr2.1:13007044-13007063 | MS.gene35779:intron | 35.0% |
| ! | ATATCCATGGTCTGAAGTAA+CGG | - | chr2.1:13009661-13009680 | MS.gene35779:CDS | 35.0% |
| ! | ATGTCATTTCATCAATGTGG+AGG | - | chr2.1:13007099-13007118 | MS.gene35779:intron | 35.0% |
| ! | CCCTTTTTGTTAACACCATT+TGG | + | chr2.1:13009337-13009356 | None:intergenic | 35.0% |
| ! | CTTCATTGACCACAATTTTC+AGG | - | chr2.1:13008509-13008528 | MS.gene35779:intron | 35.0% |
| ! | GACGACGATTAATACTTTTG+AGG | - | chr2.1:13005130-13005149 | MS.gene35779:CDS | 35.0% |
| ! | GCTTGCTTTGTTCTTGAATT+TGG | + | chr2.1:13005215-13005234 | None:intergenic | 35.0% |
| ! | TACACATGGTGATGAAATCT+TGG | - | chr2.1:13008309-13008328 | MS.gene35779:intron | 35.0% |
| ! | TCTTCAAGCTGATTTCAAAG+AGG | - | chr2.1:13008132-13008151 | MS.gene35779:intron | 35.0% |
| ! | TGTCATTTCATCAATGTGGA+GGG | - | chr2.1:13007100-13007119 | MS.gene35779:intron | 35.0% |
| ! | TGTTGAAAACAAATCGACTC+GGG | - | chr2.1:13007865-13007884 | MS.gene35779:CDS | 35.0% |
| !! | CAGTTTTGGTCATAAAATGC+AGG | - | chr2.1:13006713-13006732 | MS.gene35779:CDS | 35.0% |
| !! | GTGGTTGACGAAGTTATTTT+AGG | - | chr2.1:13008590-13008609 | MS.gene35779:intron | 35.0% |
| !! | TACCCATTTAGGTAATGGAA+TGG | + | chr2.1:13007145-13007164 | None:intergenic | 35.0% |
| !! | TTTCAGTTTTATACCACCAG+TGG | + | chr2.1:13008816-13008835 | None:intergenic | 35.0% |
| !!! | ATACTTTTGAGGTTCACGAA+AGG | - | chr2.1:13005141-13005160 | MS.gene35779:intron | 35.0% |
| !!! | CATACATCCTTAGTTTTGGA+GGG | + | chr2.1:13009360-13009379 | None:intergenic | 35.0% |
| !!! | GGTTGACGAAGTTATTTTAG+GGG | - | chr2.1:13008592-13008611 | MS.gene35779:intron | 35.0% |
| !!! | TTGGTTTTGACCTTTCCATA+GGG | + | chr2.1:13009595-13009614 | None:intergenic | 35.0% |
| !!! | TTTGGTTTTGACCTTTCCAT+AGG | + | chr2.1:13009596-13009615 | None:intergenic | 35.0% |
| AAAACTCGAGAAACAGCTGA+AGG | - | chr2.1:13006930-13006949 | MS.gene35779:intron | 40.0% | |
| AACATACGAAGATCCAATGC+TGG | - | chr2.1:13006752-13006771 | MS.gene35779:CDS | 40.0% | |
| ACACCAATAGTTCAGGTATC+AGG | - | chr2.1:13007199-13007218 | MS.gene35779:CDS | 40.0% | |
| AGTCACATACCTACGTTTGA+CGG | - | chr2.1:13009381-13009400 | MS.gene35779:intron | 40.0% | |
| ATAGTTCTTCCGTCAAACGT+AGG | + | chr2.1:13009393-13009412 | None:intergenic | 40.0% | |
| ATATCCGTTACTTCAGACCA+TGG | + | chr2.1:13009668-13009687 | None:intergenic | 40.0% | |
| ATCCTGAACCAGTTGAAACA+AGG | + | chr2.1:13007055-13007074 | None:intergenic | 40.0% | |
| ATTACACAGTCCCTATGGAA+AGG | - | chr2.1:13009582-13009601 | MS.gene35779:intron | 40.0% | |
| ATTTGATTACAGGTCCTGAG+TGG | - | chr2.1:13009220-13009239 | MS.gene35779:intron | 40.0% | |
| CAAACAACGTTCTGTGTCTT+TGG | - | chr2.1:13005271-13005290 | MS.gene35779:CDS | 40.0% | |
| CATCAATGTGGAGGGAATAT+TGG | - | chr2.1:13007108-13007127 | MS.gene35779:intron | 40.0% | |
| CCAACTTCAAGTACCCATTT+AGG | + | chr2.1:13007156-13007175 | None:intergenic | 40.0% | |
| CCTAAATGGGTACTTGAAGT+TGG | - | chr2.1:13007153-13007172 | MS.gene35779:intron | 40.0% | |
| CCTAGAGATTCTGCATAAGA+AGG | + | chr2.1:13007759-13007778 | None:intergenic | 40.0% | |
| CCTCCAAAACTAAGGATGTA+TGG | - | chr2.1:13009358-13009377 | MS.gene35779:intron | 40.0% | |
| CCTTCTTATGCAGAATCTCT+AGG | - | chr2.1:13007756-13007775 | MS.gene35779:CDS | 40.0% | |
| CTAACTTCACTTTGCAACCT+AGG | + | chr2.1:13008354-13008373 | None:intergenic | 40.0% | |
| CTATACGTGTAGATAGAGCA+AGG | - | chr2.1:13005186-13005205 | MS.gene35779:intron | 40.0% | |
| CTATCATTACACAGTCCCTA+TGG | - | chr2.1:13009577-13009596 | MS.gene35779:intron | 40.0% | |
| CTCATATTTCCTGAATTGCG+TGG | + | chr2.1:13005641-13005660 | None:intergenic | 40.0% | |
| GATAAAATGGTTACCTCTGC+AGG | + | chr2.1:13005326-13005345 | None:intergenic | 40.0% | |
| GATTGTGACACAGTCAAGTT+AGG | - | chr2.1:13007546-13007565 | MS.gene35779:intron | 40.0% | |
| GCAACCTAGGAATACTTTGT+TGG | + | chr2.1:13008341-13008360 | None:intergenic | 40.0% | |
| GGAACTTACCAAACAGAGAA+AGG | - | chr2.1:13008250-13008269 | MS.gene35779:intron | 40.0% | |
| GTGGGGTATAGTAGAATCAA+AGG | - | chr2.1:13006996-13007015 | MS.gene35779:intron | 40.0% | |
| GTTACTTCAGACCATGGATA+TGG | + | chr2.1:13009662-13009681 | None:intergenic | 40.0% | |
| TAATGGAAGAACTCCCATTC+AGG | - | chr2.1:13007266-13007285 | MS.gene35779:CDS | 40.0% | |
| TGATAGTATTTCTCTGGGTC+TGG | + | chr2.1:13009563-13009582 | None:intergenic | 40.0% | |
| TTATGCAGAATCTCTAGGCT+GGG | - | chr2.1:13007761-13007780 | MS.gene35779:CDS | 40.0% | |
| ! | AGGATGCATGTATGGTGTTT+TGG | - | chr2.1:13006592-13006611 | MS.gene35779:intron | 40.0% |
| ! | AGTTATGGTTGATGTCTGGT+GGG | - | chr2.1:13006978-13006997 | MS.gene35779:intron | 40.0% |
| ! | ATGGAGTTATGGTTGATGTC+TGG | - | chr2.1:13006974-13006993 | MS.gene35779:intron | 40.0% |
| ! | CTTCCAAGGTATGATAGTGA+AGG | - | chr2.1:13009283-13009302 | MS.gene35779:intron | 40.0% |
| ! | CTTTGGCGACAACTTTTAAG+TGG | + | chr2.1:13008680-13008699 | None:intergenic | 40.0% |
| ! | GAAGCCAACAAAGTATTCCT+AGG | - | chr2.1:13008334-13008353 | MS.gene35779:intron | 40.0% |
| ! | GGAATGTATTTCACTTGGTG+TGG | - | chr2.1:13007227-13007246 | MS.gene35779:CDS | 40.0% |
| ! | GGTACATAATTTGCCAGCAT+TGG | + | chr2.1:13006768-13006787 | None:intergenic | 40.0% |
| ! | TCAGAGGAATATGGTTTGCA+CGG | - | chr2.1:13005985-13006004 | MS.gene35779:CDS | 40.0% |
| !! | ACTGGGAGCATCACATATAT+TGG | + | chr2.1:13006789-13006808 | None:intergenic | 40.0% |
| !!! | CCATACATCCTTAGTTTTGG+AGG | + | chr2.1:13009361-13009380 | None:intergenic | 40.0% |
| AAAAGGGCCCTCCAAAACTA+AGG | - | chr2.1:13009350-13009369 | MS.gene35779:intron | 45.0% | |
| AACAGATTGCTGGAATCCAC+TGG | - | chr2.1:13008797-13008816 | MS.gene35779:intron | 45.0% | |
| AAGCAGTGAAGCCATATCCA+TGG | - | chr2.1:13009648-13009667 | MS.gene35779:intron | 45.0% | |
| AGAGAACCTTGAAGTTGCTG+GGG | - | chr2.1:13009252-13009271 | MS.gene35779:intron | 45.0% | |
| AGAGAGAACCTTGAAGTTGC+TGG | - | chr2.1:13009250-13009269 | MS.gene35779:intron | 45.0% | |
| AGAGCAAGAGGATGCATGTA+TGG | - | chr2.1:13006584-13006603 | MS.gene35779:intron | 45.0% | |
| CTCTGTTTGGTAAGTTCCCT+TGG | + | chr2.1:13008248-13008267 | None:intergenic | 45.0% | |
| CTTATGCAGAATCTCTAGGC+TGG | - | chr2.1:13007760-13007779 | MS.gene35779:CDS | 45.0% | |
| GAGAGAACCTTGAAGTTGCT+GGG | - | chr2.1:13009251-13009270 | MS.gene35779:intron | 45.0% | |
| GATATCTGAGTTCTCCAGCA+GGG | + | chr2.1:13007737-13007756 | None:intergenic | 45.0% | |
| GGCTGATGAAACTGCAATTG+AGG | + | chr2.1:13007495-13007514 | None:intergenic | 45.0% | |
| TCGCCAAAGTAGCCTAAGTT+CGG | - | chr2.1:13008691-13008710 | MS.gene35779:intron | 45.0% | |
| TGACATCAGGACCTCAAATG+TGG | + | chr2.1:13007442-13007461 | None:intergenic | 45.0% | |
| TTATTAGGCAGCTCCCATTC+AGG | + | chr2.1:13008178-13008197 | None:intergenic | 45.0% | |
| ! | AAGTTCCTGCGCACAACTTT+TGG | + | chr2.1:13008983-13009002 | None:intergenic | 45.0% |
| ! | CATTTGAGGTCCTGATGTCA+AGG | - | chr2.1:13007442-13007461 | MS.gene35779:intron | 45.0% |
| ! | CATTTTCCCCAGCAACTTCA+AGG | + | chr2.1:13009261-13009280 | None:intergenic | 45.0% |
| ! | GAGTTATGGTTGATGTCTGG+TGG | - | chr2.1:13006977-13006996 | MS.gene35779:intron | 45.0% |
| ! | GTCCTTGTTTCAACTGGTTC+AGG | - | chr2.1:13007050-13007069 | MS.gene35779:intron | 45.0% |
| ! | GTTATGGTTGATGTCTGGTG+GGG | - | chr2.1:13006979-13006998 | MS.gene35779:intron | 45.0% |
| ! | TATGGTTTGCACGGATTGAC+AGG | - | chr2.1:13005994-13006013 | MS.gene35779:CDS | 45.0% |
| ! | TTTGCACGGATTGACAGGTT+TGG | - | chr2.1:13005999-13006018 | MS.gene35779:CDS | 45.0% |
| !! | AAAAAGTGCTATCGCACGAG+TGG | - | chr2.1:13007924-13007943 | MS.gene35779:CDS | 45.0% |
| !! | AGCAGGTGTTGATGGAGTTA+TGG | - | chr2.1:13006963-13006982 | MS.gene35779:intron | 45.0% |
| !!! | GCACAACTTTTGGCTTCTTC+TGG | + | chr2.1:13008973-13008992 | None:intergenic | 45.0% |
| !! | AAAACAAAAAAATAAAATAA+AGG | + | chr2.1:13006114-13006133 | None:intergenic | 5.0% |
| AAAGAGGCTGCAACAAGAGC+AGG | - | chr2.1:13008148-13008167 | MS.gene35779:intron | 50.0% | |
| AAGAGCAGGCCATCCTGAAT+GGG | - | chr2.1:13008162-13008181 | MS.gene35779:intron | 50.0% | |
| AGAAGCCAAAAGTTGTGCGC+AGG | - | chr2.1:13008975-13008994 | MS.gene35779:intron | 50.0% | |
| AGATTGCTGGAATCCACTGG+TGG | - | chr2.1:13008800-13008819 | MS.gene35779:intron | 50.0% | |
| AGGGTCCTCAGCAGTATGAT+TGG | - | chr2.1:13007016-13007035 | MS.gene35779:intron | 50.0% | |
| CATGCTGCAGAGCTTACTTC+AGG | - | chr2.1:13008838-13008857 | MS.gene35779:intron | 50.0% | |
| CGACCGAACTTAGGCTACTT+TGG | + | chr2.1:13008697-13008716 | None:intergenic | 50.0% | |
| CGTTTGTAATCACCCCTAGC+TGG | + | chr2.1:13006888-13006907 | None:intergenic | 50.0% | |
| CTGAAGTAAGCTCTGCAGCA+TGG | + | chr2.1:13008840-13008859 | None:intergenic | 50.0% | |
| CTGGGGAAAATGCACTTCCA+AGG | - | chr2.1:13009269-13009288 | MS.gene35779:intron | 50.0% | |
| GACCACTCAAATAACCCCGT+GGG | + | chr2.1:13005619-13005638 | None:intergenic | 50.0% | |
| GATTACAGGTCCTGAGTGGA+GGG | - | chr2.1:13009224-13009243 | MS.gene35779:intron | 50.0% | |
| GCTGACCAATCATACTGCTG+AGG | + | chr2.1:13007024-13007043 | None:intergenic | 50.0% | |
| GGATATCTGAGTTCTCCAGC+AGG | + | chr2.1:13007738-13007757 | None:intergenic | 50.0% | |
| GGCTGGGTATTTCCTGGTAT+TGG | - | chr2.1:13007777-13007796 | MS.gene35779:CDS | 50.0% | |
| GGGAGCTGCCTAATAATGCA+GGG | - | chr2.1:13008182-13008201 | MS.gene35779:CDS | 50.0% | |
| TCTCTAGGCTGGGTATTTCC+TGG | - | chr2.1:13007771-13007790 | MS.gene35779:CDS | 50.0% | |
| TGAGAGGATGAAACCACCCA+CGG | - | chr2.1:13005600-13005619 | MS.gene35779:CDS | 50.0% | |
| TGATTACAGGTCCTGAGTGG+AGG | - | chr2.1:13009223-13009242 | MS.gene35779:intron | 50.0% | |
| TGCAAGCGCAACCACATTTG+AGG | - | chr2.1:13007428-13007447 | MS.gene35779:intron | 50.0% | |
| TGCAATTGCTGAACCTGCAG+AGG | - | chr2.1:13005310-13005329 | MS.gene35779:CDS | 50.0% | |
| TGGGAGCTGCCTAATAATGC+AGG | - | chr2.1:13008181-13008200 | MS.gene35779:CDS | 50.0% | |
| TTGAGTGGTCCACGCAATTC+AGG | - | chr2.1:13005629-13005648 | MS.gene35779:CDS | 50.0% | |
| !! | TGGTTGGTGTTGTGAGTGAG+AGG | - | chr2.1:13005584-13005603 | MS.gene35779:CDS | 50.0% |
| AGAGGATGAAACCACCCACG+GGG | - | chr2.1:13005602-13005621 | MS.gene35779:CDS | 55.0% | |
| CAAGAGCAGGCCATCCTGAA+TGG | - | chr2.1:13008161-13008180 | MS.gene35779:intron | 55.0% | |
| CACCCACGGGGTTATTTGAG+TGG | - | chr2.1:13005614-13005633 | MS.gene35779:CDS | 55.0% | |
| CACTCAAATAACCCCGTGGG+TGG | + | chr2.1:13005616-13005635 | None:intergenic | 55.0% | |
| GAGAGGATGAAACCACCCAC+GGG | - | chr2.1:13005601-13005620 | MS.gene35779:CDS | 55.0% | |
| GGACCACTCAAATAACCCCG+TGG | + | chr2.1:13005620-13005639 | None:intergenic | 55.0% | |
| TAGAGATGGATACCGTCCCG+TGG | - | chr2.1:13008879-13008898 | MS.gene35779:intron | 55.0% | |
| TAGGCAGCTCCCATTCAGGA+TGG | + | chr2.1:13008174-13008193 | None:intergenic | 55.0% | |
| TCGAGCGAACATCCTTGCCA+CGG | + | chr2.1:13008899-13008918 | None:intergenic | 55.0% | |
| TGTAATCACCCCTAGCTGGC+AGG | + | chr2.1:13006884-13006903 | None:intergenic | 55.0% | |
| TTGGTTCCTCCTGCCAGCTA+GGG | - | chr2.1:13006872-13006891 | MS.gene35779:intron | 55.0% | |
| ! | TGCGCAGGAACTTGTTCAGC+AGG | - | chr2.1:13008990-13009009 | MS.gene35779:intron | 55.0% |
| !! | CTACGAGCAGCAGGTGTTGA+TGG | - | chr2.1:13006955-13006974 | MS.gene35779:intron | 55.0% |
| !! | TCGACTCGGGTTCTCTCTCA+TGG | - | chr2.1:13007878-13007897 | MS.gene35779:CDS | 55.0% |
| AATCACCCCTAGCTGGCAGG+AGG | + | chr2.1:13006881-13006900 | None:intergenic | 60.0% | |
| ATGGATACCGTCCCGTGGCA+AGG | - | chr2.1:13008884-13008903 | MS.gene35779:intron | 60.0% | |
| CGAACATCCTTGCCACGGGA+CGG | + | chr2.1:13008894-13008913 | None:intergenic | 60.0% | |
| CGAGCGAACATCCTTGCCAC+GGG | + | chr2.1:13008898-13008917 | None:intergenic | 60.0% | |
| CTGAAGGAGCTACGAGCAGC+AGG | - | chr2.1:13006946-13006965 | MS.gene35779:intron | 60.0% | |
| GAAGTAGGACTTGGCCCTGC+TGG | - | chr2.1:13007720-13007739 | MS.gene35779:CDS | 60.0% | |
| TACAGGTCCTGAGTGGAGGG+TGG | - | chr2.1:13009227-13009246 | MS.gene35779:intron | 60.0% | |
| TCTCTCTCCACCCTCCACTC+AGG | + | chr2.1:13009237-13009256 | None:intergenic | 60.0% | |
| TGGTTCCTCCTGCCAGCTAG+GGG | - | chr2.1:13006873-13006892 | MS.gene35779:intron | 60.0% | |
| TTGCTGCACGGCTGCAACGT+TGG | - | chr2.1:13007968-13007987 | MS.gene35779:CDS | 60.0% | |
| ! | GTTGGTTCCTCCTGCCAGCT+AGG | - | chr2.1:13006871-13006890 | MS.gene35779:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.1 | gene | 13005125 | 13009855 | 13005125 | ID=MS.gene35779 |
| chr2.1 | mRNA | 13005125 | 13009855 | 13005125 | ID=MS.gene35779.t1;Parent=MS.gene35779 |
| chr2.1 | exon | 13009649 | 13009855 | 13009649 | ID=MS.gene35779.t1.exon1;Parent=MS.gene35779.t1 |
| chr2.1 | CDS | 13009649 | 13009855 | 13009649 | ID=cds.MS.gene35779.t1;Parent=MS.gene35779.t1 |
| chr2.1 | exon | 13008174 | 13008245 | 13008174 | ID=MS.gene35779.t1.exon2;Parent=MS.gene35779.t1 |
| chr2.1 | CDS | 13008174 | 13008245 | 13008174 | ID=cds.MS.gene35779.t1;Parent=MS.gene35779.t1 |
| chr2.1 | exon | 13007693 | 13008091 | 13007693 | ID=MS.gene35779.t1.exon3;Parent=MS.gene35779.t1 |
| chr2.1 | CDS | 13007693 | 13008091 | 13007693 | ID=cds.MS.gene35779.t1;Parent=MS.gene35779.t1 |
| chr2.1 | exon | 13007171 | 13007335 | 13007171 | ID=MS.gene35779.t1.exon4;Parent=MS.gene35779.t1 |
| chr2.1 | CDS | 13007171 | 13007335 | 13007171 | ID=cds.MS.gene35779.t1;Parent=MS.gene35779.t1 |
| chr2.1 | exon | 13006599 | 13006862 | 13006599 | ID=MS.gene35779.t1.exon5;Parent=MS.gene35779.t1 |
| chr2.1 | CDS | 13006599 | 13006862 | 13006599 | ID=cds.MS.gene35779.t1;Parent=MS.gene35779.t1 |
| chr2.1 | exon | 13005969 | 13006178 | 13005969 | ID=MS.gene35779.t1.exon6;Parent=MS.gene35779.t1 |
| chr2.1 | CDS | 13005969 | 13006178 | 13005969 | ID=cds.MS.gene35779.t1;Parent=MS.gene35779.t1 |
| chr2.1 | exon | 13005509 | 13005748 | 13005509 | ID=MS.gene35779.t1.exon7;Parent=MS.gene35779.t1 |
| chr2.1 | CDS | 13005509 | 13005748 | 13005509 | ID=cds.MS.gene35779.t1;Parent=MS.gene35779.t1 |
| chr2.1 | exon | 13005240 | 13005429 | 13005240 | ID=MS.gene35779.t1.exon8;Parent=MS.gene35779.t1 |
| chr2.1 | CDS | 13005240 | 13005429 | 13005240 | ID=cds.MS.gene35779.t1;Parent=MS.gene35779.t1 |
| chr2.1 | exon | 13005125 | 13005153 | 13005125 | ID=MS.gene35779.t1.exon9;Parent=MS.gene35779.t1 |
| chr2.1 | CDS | 13005125 | 13005153 | 13005125 | ID=cds.MS.gene35779.t1;Parent=MS.gene35779.t1 |
| Gene Sequence |
| Protein sequence |
