AlfalfaGEDB | MS.gene000817

M. sativa cultivar XinJiangDaYe / MS.gene000817

KEGG: -
GO: GO:0000166 GO:0003674 GO:0003824 GO:0004672 GO:0005488 GO:0005524 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019538 GO:0030246 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0036211 GO:0043167 GO:0043168 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0071704 GO:0097159 GO:0097367 GO:0140096 GO:1901265 GO:1901363 GO:1901564
PFAM: PF00069.28 PF00139.22

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene000817.t1	KEH22962.1	98.2	612	11	0	1	612	71	682	0.00E+00	1210.3

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene000817.t1	Q9M2S4	59.1	604	236	7	8	602	80	681	2.8e-199	696.4

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene000817.t1	A0A072U009	98.2	612	11	0	1	612	71	682	0.0e+00	1210.3

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
MS.gene000817	MS.gene055225	PPI
MS.gene000817	MS.gene89348	PPI
MS.gene000817	MS.gene46132	PPI
MS.gene000817	MS.gene89350	PPI
MS.gene000817	MS.gene000826	PPI
MS.gene000817	MS.gene055234	PPI
MS.gene000817	MS.gene055226	PPI
MS.gene000817	MS.gene000821	PPI
MS.gene000817	MS.gene46131	PPI
MS.gene000817	MS.gene055235	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
MS.gene000817.t1	MTR_7g063010	98.203	612	11	0	1	612	71	682	1240
MS.gene000817.t1	MTR_7g063030	84.628	592	89	2	1	591	68	658	1044
MS.gene000817.t1	MTR_7g063030	84.628	592	89	2	1	591	74	664	1043
MS.gene000817.t1	MTR_5g035910	77.886	615	130	4	1	612	75	686	932
MS.gene000817.t1	MTR_3g068025	61.794	602	209	6	2	586	77	674	728
MS.gene000817.t1	MTR_7g062950	57.895	551	227	3	2	547	69	619	631
MS.gene000817.t1	MTR_1g052275	57.220	554	228	4	2	547	69	621	628
MS.gene000817.t1	MTR_7g062750	55.616	552	238	4	2	546	69	620	619
MS.gene000817.t1	MTR_7g062940	55.797	552	238	4	1	547	68	618	612
MS.gene000817.t1	MTR_7g062890	56.182	550	236	4	2	547	69	617	610

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
MS.gene000817.t1	AT3G55550	59.365	598	232	7	8	596	80	675	701
MS.gene000817.t1	AT3G53810	57.866	553	226	6	1	546	74	626	632
MS.gene000817.t1	AT4G29050	52.405	582	261	10	2	569	85	664	600
MS.gene000817.t1	AT4G29050	52.405	582	261	10	2	569	71	650	599
MS.gene000817.t1	AT2G37710	55.978	552	237	5	1	546	74	625	599
MS.gene000817.t1	AT4G02420	54.137	556	243	5	2	547	76	629	578
MS.gene000817.t1	AT4G02410	53.405	558	248	7	2	547	77	634	572
MS.gene000817.t1	AT1G70110	49.640	556	271	5	2	549	70	624	568
MS.gene000817.t1	AT3G59700	50.442	565	257	12	1	549	62	619	539
MS.gene000817.t1	AT3G45430	50.000	552	262	10	5	547	74	620	534

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Find 128 sgRNAs with CRISPR-Local

Find 149 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACAGTTGCTTGGGCAGGG+TGG	0.643338	7.1:+38702302	MS.gene000817:CDS
AAACATACTTCTTTGATACT+CGG	0.585234	7.1:+38702113	MS.gene000817:CDS
AAAGAAGTATGTTTCTTCTT+AGG	0.214367	7.1:-38702104	None:intergenic
AACATTAGGCTATTTGGCAC+CGG	0.534642	7.1:+38702784	MS.gene000817:CDS
AACTCATCTTGTGATGCCTT+AGG	0.489648	7.1:-38702902	None:intergenic
AAGAAGGCCTATTGAACCTA+AGG	0.538242	7.1:+38702886	MS.gene000817:CDS
AAGATTAGGCGATTTCGGAT+TGG	0.538202	7.1:+38702712	MS.gene000817:CDS
AATGAAATGAGAAAGCCAGG+TGG	0.769961	7.1:+38703127	MS.gene000817:CDS
AATGGAAGATTAGGCGATTT+CGG	0.317604	7.1:+38702707	MS.gene000817:CDS
ACAAAATCACCATTCAATTT+AGG	0.084398	7.1:-38702986	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AGTTTCGACAAATCAAGAAA+CGG	-	chr7.1:38702068-38702087	None:intergenic	30.0%
ATGAGTTCAAGCACTTATAA+TGG	+	chr7.1:38703217-38703236	MS.gene000817:CDS	30.0%
CAAATGATGTTCCAACTATA+AGG	+	chr7.1:38703053-38703072	MS.gene000817:CDS	30.0%
CAAGTAACATAACCAAATTC+CGG	-	chr7.1:38702460-38702479	None:intergenic	30.0%
GATGAATTCTTGAATTCTCT+TGG	+	chr7.1:38703172-38703191	MS.gene000817:CDS	30.0%
GGATGGAGTTTCAAAATTAA+TGG	+	chr7.1:38702035-38702054	MS.gene000817:CDS	30.0%
GTTTCACATGAATCAAAACA+AGG	+	chr7.1:38702386-38702405	MS.gene000817:CDS	30.0%
TAATCAACCCAAACCAAAAT+TGG	-	chr7.1:38701849-38701868	None:intergenic	30.0%
TGTAATCATACACAAGCAAA+AGG	-	chr7.1:38702505-38702524	None:intergenic	30.0%
TTTGAACTCAATGGAAGATT+AGG	+	chr7.1:38702698-38702717	MS.gene000817:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7.1	gene	38701489	38703327	38701489	ID=MS.gene000817
chr7.1	mRNA	38701489	38703327	38701489	ID=MS.gene000817.t1;Parent=MS.gene000817
chr7.1	exon	38701489	38703327	38701489	ID=MS.gene000817.t1.exon1;Parent=MS.gene000817.t1
chr7.1	CDS	38701489	38703327	38701489	ID=cds.MS.gene000817.t1;Parent=MS.gene000817.t1

Gene Sequence

>MS.gene000817

ATAAAGAACAAAACAACTGGTAAAGTTTTCTCTTTCTCTTCATCTTTTGCACTTGCTTGTGTACCTGAATATCCTAAACTTGGTGGCCATGGTATGGCTTTTACTATAGTTCCTTCAAAAGATCTCAAAGCTTTACCTAGTCAATATCTTGGTCTTCTGAATTCAAGTGATGTTGGTAATTTCTCTAACCATCTTTTTGCTGTTGAGTTTGACACTGTTCAAGATTTTGAGTTTGGTGATATTAATGATAACCATGTTGGTATAGATATTAATAGTATGCGTTCAAATGCATCTATTACTGCTAGTTATTATAGTGATGATGATATGTTGCATAATATTAGTATTAAAGGTGGAAAACCAATTTTGGTTTGGGTTGATTATGATTCTTCATTGAATCTTATTAGTGTTACACTTTCACCAACTTCAAATAAGCCTAAAAAACCTATTTTGACTTTTCATATGGATCTATCACCTCTTTTTCTTGATACTATGTATGTTGGTTTCTCTGCTTCAACTGGTTTACTTGCTAGCTCTCATTATGTTTTGGGATGGAGTTTCAAAATTAATGGGCCGGCGCCGTTTCTTGATTTGTCGAAACTACCTCAGCTTCCACATCCTAAGAAGAAACATACTTCTTTGATACTCGGTGTTTCGCTCGGATCTGCTTTGATTGTGTTGTGTAGTGTAGCATTTGGTTTTTACATTTATAGAAAAATCAAGAATGCTGATGTTATTGAAGCTTGGGAGCTTGAAGTTGGACCACATAGATATACTTATCAAGAGCTCAAGACAGCTACAAAAGGTTTCAAGGAGAAACAGTTGCTTGGGCAGGGTGGTTTTGGTAAAGTTTATAACGGGATATTGCCGAAATCGAAGATTCAAGTGGCTGTTAAGAGAGTTTCACATGAATCAAAACAAGGGTTGAGGGAATTTGTGTCTGAAATTGCTAGCATAGGCCGGCTTCGTCACCGGAATTTGGTTATGTTACTTGGATGGTGTCGTCGCAGAGGTGACCTTTTGCTTGTGTATGATTACATGGCGAATGGAAGCTTGGACAAGTACTTGTTTGAAGATTCAGAATTTGTGTTAAGTTGGGAACAGAGGTTTAAGATAATAAAGGGCGTTGCTTCTGGTCTTTTGTATCTACATGAAGGCTATGAACAAGTGGTAATCCATAGAGATGTTAAAGCTAGCAATGTGCTGTTGGATTTTGAACTCAATGGAAGATTAGGCGATTTCGGATTGGCAAGGTTGTATGAACATGGTGCTAATCCCGGCACGACAAGAGTGGTGGGAACATTAGGCTATTTGGCACCGGAGTTACCTAGGACAGGACGAGCAACAACAAGCTCCGATGTTTTTGCATTCGGGGCACTTCTTCTCGAGGTTGTTTGCGGAAGAAGGCCTATTGAACCTAAGGCATCACAAGATGAGTTGGTGTTGGTGGATTGGGTTTGGGAAAGGTTCAAAGAAGGAAGAGCATTGGAAGTAGTTGACCCTAAATTGAATGGTGATTTTGTTGAAACTGAGGTAATGATGGTGTTGAAATTAGGTTTGATATGTTCAAATGATGTTCCAACTATAAGGCCTAGTATGAGACAAGTAGTGAGGATTTTGGATGGAGAAGTTGAGTTACCAAATGAAATGAGAAAGCCAGGTGGTATTGATTCACAAGAGGGGTTTGATGAATTCTTGAATTCTCTTGGAACTTCTAACTCATTTGATCAGATGAGTTCAAGCACTTATAATGGAAAGAGAGATATTGACAATACTAGTTTTATCACTTTTGGTAATTCACCTCAATCATCACTTCTCAATGCTAGAGGAGAAACAAGGTGA

Protein sequence

>MS.gene000817.t1

IKNKTTGKVFSFSSSFALACVPEYPKLGGHGMAFTIVPSKDLKALPSQYLGLLNSSDVGNFSNHLFAVEFDTVQDFEFGDINDNHVGIDINSMRSNASITASYYSDDDMLHNISIKGGKPILVWVDYDSSLNLISVTLSPTSNKPKKPILTFHMDLSPLFLDTMYVGFSASTGLLASSHYVLGWSFKINGPAPFLDLSKLPQLPHPKKKHTSLILGVSLGSALIVLCSVAFGFYIYRKIKNADVIEAWELEVGPHRYTYQELKTATKGFKEKQLLGQGGFGKVYNGILPKSKIQVAVKRVSHESKQGLREFVSEIASIGRLRHRNLVMLLGWCRRRGDLLLVYDYMANGSLDKYLFEDSEFVLSWEQRFKIIKGVASGLLYLHEGYEQVVIHRDVKASNVLLDFELNGRLGDFGLARLYEHGANPGTTRVVGTLGYLAPELPRTGRATTSSDVFAFGALLLEVVCGRRPIEPKASQDELVLVDWVWERFKEGRALEVVDPKLNGDFVETEVMMVLKLGLICSNDVPTIRPSMRQVVRILDGEVELPNEMRKPGGIDSQEGFDEFLNSLGTSNSFDQMSSSTYNGKRDIDNTSFITFGNSPQSSLLNARGETR