AlfalfaGEDB | MS.gene000830

M. sativa cultivar XinJiangDaYe / MS.gene000830

KEGG: -
GO: GO:0000166 GO:0003674 GO:0003824 GO:0004672 GO:0005488 GO:0005524 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019538 GO:0030246 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0036211 GO:0043167 GO:0043168 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0071704 GO:0097159 GO:0097367 GO:0140096 GO:1901265 GO:1901363 GO:1901564
PFAM: PF00069.28 PF00139.22

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene000830.t1	XP_013448911.1	89.8	669	68	0	1	669	1	669	0.00E+00	1193.7

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene000830.t1	O80939	62.2	666	228	7	17	669	21	675	2.6e-235	816.2

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene000830.t1	A0A072U1C6	89.8	669	68	0	1	669	1	669	0.0e+00	1193.7

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
MS.gene000818	MS.gene000830	PPI
MS.gene000819	MS.gene000830	PPI
MS.gene000820	MS.gene000830	PPI
MS.gene000823	MS.gene000830	PPI
MS.gene000830	MS.gene000826	PPI
MS.gene000830	MS.gene81617	PPI
MS.gene000830	MS.gene76199	PPI
MS.gene000830	MS.gene055234	PPI
MS.gene000830	MS.gene055226	PPI
MS.gene000830	MS.gene89350	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
MS.gene000830.t1	MTR_7g062680	89.836	669	68	0	1	669	1	669	1121
MS.gene000830.t1	MTR_7g062950	83.824	680	88	4	1	669	1	669	1102
MS.gene000830.t1	MTR_7g062770	83.458	671	101	3	1	669	1	663	1098
MS.gene000830.t1	MTR_7g062750	81.913	669	113	2	1	669	1	661	1080
MS.gene000830.t1	MTR_7g062940	81.001	679	108	3	1	669	1	668	1077
MS.gene000830.t1	MTR_7g062890	82.063	669	108	2	1	669	1	657	1076
MS.gene000830.t1	MTR_7g062920	82.063	669	110	2	1	669	1	659	1049
MS.gene000830.t1	MTR_7g062700	82.327	679	102	3	1	669	1	671	1047
MS.gene000830.t1	MTR_1g052275	81.886	668	98	3	1	668	1	645	1027
MS.gene000830.t1	MTR_7g062660	81.166	669	109	2	1	669	1	652	1025

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
MS.gene000830.t1	AT2G37710	62.162	666	228	7	17	669	21	675	815
MS.gene000830.t1	AT3G53810	59.524	672	246	10	13	669	17	677	782
MS.gene000830.t1	AT4G02420	56.554	679	275	8	1	669	1	669	748
MS.gene000830.t1	AT4G02410	56.146	659	276	7	17	669	23	674	738
MS.gene000830.t1	AT4G29050	53.784	621	267	8	14	629	19	624	671
MS.gene000830.t1	AT4G29050	53.784	621	267	8	14	629	33	638	671
MS.gene000830.t1	AT3G55550	52.932	614	276	5	19	630	24	626	629
MS.gene000830.t1	AT1G70110	48.758	644	318	3	30	669	31	666	626
MS.gene000830.t1	AT3G45430	50.232	647	297	13	1	641	5	632	621
MS.gene000830.t1	AT3G45430	50.232	647	297	13	1	641	5	632	621

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Find 138 sgRNAs with CRISPR-Local

Find 155 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGTCGGAGAAAGATCTT+TGG	0.403333	7.1:-38919315	None:intergenic
AAACAACAAATACAATTCCA+TGG	0.469460	7.1:-38918926	None:intergenic
AAACTAAGCGAAGACAAATC+TGG	0.435142	7.1:-38920520	None:intergenic
AAATCTTTGACTCCAATTCA+AGG	0.392869	7.1:-38919969	None:intergenic
AAATTATGTGTCTGAAGAGG+TGG	0.549595	7.1:+38920396	MS.gene000830:CDS
AACAAATTATGTGTCTGAAG+AGG	0.601815	7.1:+38920393	MS.gene000830:CDS
AACAACAAATACAATTCCAT+GGG	0.574512	7.1:-38918925	None:intergenic
AACCAAAAGTGACCTTGAAT+TGG	0.381992	7.1:+38919957	MS.gene000830:CDS
AACTTGAGGTTGCAGTGAAG+AGG	0.546093	7.1:+38919759	MS.gene000830:CDS
AAGGGTCTATTCGGAGTTGG+TGG	0.518373	7.1:+38919698	MS.gene000830:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAATCTTTGACTCCAATTCA+AGG	-	chr7.1:38919972-38919991	None:intergenic	30.0%
AACAAATTATGTGTCTGAAG+AGG	+	chr7.1:38920393-38920412	MS.gene000830:CDS	30.0%
AGATCTATACTTTGCTACAA+AGG	+	chr7.1:38919664-38919683	MS.gene000830:CDS	30.0%
AGCAAACTTAGCAAAATCAA+AGG	-	chr7.1:38919539-38919558	None:intergenic	30.0%
ATGAAGATTATGGTCAATTC+AGG	+	chr7.1:38919153-38919172	MS.gene000830:CDS	30.0%
CAAAGATTTCGAATCATCAA+AGG	+	chr7.1:38919983-38920002	MS.gene000830:CDS	30.0%
CATTGATATCAATACCAACA+TGG	-	chr7.1:38919097-38919116	None:intergenic	30.0%
CTTCTCATTATGTTCTTGTT+TGG	+	chr7.1:38919387-38919406	MS.gene000830:CDS	30.0%
GAGGCAAAAGATGTATATTT+AGG	+	chr7.1:38920370-38920389	MS.gene000830:CDS	30.0%
GATATCAATGATAACCATGT+TGG	+	chr7.1:38919080-38919099	MS.gene000830:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7.1	gene	38918639	38920648	38918639	ID=MS.gene000830
chr7.1	mRNA	38918639	38920648	38918639	ID=MS.gene000830.t1;Parent=MS.gene000830
chr7.1	exon	38918639	38920648	38918639	ID=MS.gene000830.t1.exon1;Parent=MS.gene000830.t1
chr7.1	CDS	38918639	38920648	38918639	ID=cds.MS.gene000830.t1;Parent=MS.gene000830.t1

Gene Sequence

>MS.gene000830

ATGTTCCTCAAGCTTGTGTTAATGTTGTTTTTTCTTGTTACATTGGTAGCAAGTAAAGATAACAGTTTCATCTATAATGGTTTCCAATCATCACATTTATATCTTGATGGTATTGCTGAGTTAACCTCGACTGGCATACTAAGACTCACAAATGATACAGAACATGAAAAAGGACATGCTTTCTATCCATATCCTATAGTTTTCAAAAACACTCTCAGTGAAAGTGTGTCTTTTTTCTCAACTACTTTTGTATTTGCCATAAGACCTCAATATCCAACTCTTAGTTCCCATGGAATTGTATTTGTTGTTTCACCTACAAAAGGGCTACCAAATTCAAAAGCAAGTCAATACCTTGGTCTCTTTAACCAATCCAACAATGGAAACAGTAGTAACCATGTTTTCGGTGTTGAACTTGATACTCTTCTAAGTAGTGAGTTTGATGATATCAATGATAACCATGTTGGTATTGATATCAATGATTTGAAATCAGCTAATTCAACTCCTGCAGGATATTATGAAGATTATGGTCAATTCAGGAATTTATCCCTTTCCAGTGGAAATCCCATGCAGGTATGGATTGAATATGATGGTGTGAAAAAAAAGATTGACGTTACTTTAGCTCCAATTAGTGTTGGTTTTAATGTTGTTAAACCACCACGACCTTTGTTATCATTGACCAAAGATCTTTCTCCGACTTTTAGAAATAGTATGTATGTTGGATTCTCATCTTCAACAGGTTCAATTCTATCTTCTCATTATGTTCTTGTTTGGAGTTTTAATGTTAATGGTCAAGCTCAAAACCTTGAAATCTCTGAACTTCCTGAGCTAAGAACATTTGCTACTCCGCTAAGAATATTTGATGAGAAAAAAAAGTCACAATTTTTAATTGTTGGGTTGCCTTTGATTTTGCTAAGTTTGCTATTCATGATAAGTTTATGGATTATGTATTATATCAAACGGAAGAAGTTTGGTGAGATTCTTGAAGATTGGGAACATGAATATGGCCCACATAGATTTAAGTTCAAAGATCTATACTTTGCTACAAAGGGTTTCAGGGAAAAGGGTCTATTCGGAGTTGGTGGATTTGGTAGAGTCTACAAAGGTGTGATGCCAGGTTCTAAACTTGAGGTTGCAGTGAAGAGGGTTTCACATGAATCAAGACAAGGGATGAGGGAATTCGTGTCGGAAATTGTTAGTATTGGTCGTCTTCGCCATAGGAATCTTGTTCCGCTTCTCGGCTATTGCAGGCGAAAAGGTGAGTTGCTTCTGGTGTATGATTACATGCCTAATGGAAGTTTAGACAATCATCTATACAACCAACCAAAAGTGACCTTGAATTGGAGTCAAAGATTTCGAATCATCAAAGGTGTTGCTTCGGGTTTGTTTTATCTACACGAAGAATGGGAGCAGGTTGTGATTCATAGAGACATAAAGGCTAGCAATGTGTTATTAGATGGTGAACTGAATGGTAGATTGGGCGATTTTGGTCTTGCAAGGTTGTATGATCATGGTGCTGATCCTCACACAACTCATTTGGTTGGAACTATTGGTTATCTTGCTCCTGAGCATATTAGAACAGGCAAGGCTACTAAATTTTCTGATGTGTTTTCTTTTGGTGCATTTCTTCTTGAGGTTGTTTGTGGTCGGAGGCCTATAAGTTGTGTGGGAGAAAATGAGAGTCTAATTCTAGTTGATTATGTGTTTGAATGTTGGAAAAGTGGTGAAATTCTTGAGGCAAAAGATGTATATTTAGGAACAAATTATGTGTCTGAAGAGGTGGAATTGGTGTTGAAGCTTGGCCTGTTGTGCTCACATTCAGAGCCTTTGGCTAGACCAAGTATGAGACAAGTTGTGCAGTATTTGGAGAGGGATATAGCTTTGCCAGATTTGTCTTCGCTTAGTTTATCTTCTTCTGGTTTAACTTTTGGGTACCAAGAATGTGTTGACGACAAGACAATGCCATATACTTCTGTGTCTATTGCTGAGTCCGTTCTCTCTGGTGGTCGTTGA

Protein sequence

>MS.gene000830.t1

MFLKLVLMLFFLVTLVASKDNSFIYNGFQSSHLYLDGIAELTSTGILRLTNDTEHEKGHAFYPYPIVFKNTLSESVSFFSTTFVFAIRPQYPTLSSHGIVFVVSPTKGLPNSKASQYLGLFNQSNNGNSSNHVFGVELDTLLSSEFDDINDNHVGIDINDLKSANSTPAGYYEDYGQFRNLSLSSGNPMQVWIEYDGVKKKIDVTLAPISVGFNVVKPPRPLLSLTKDLSPTFRNSMYVGFSSSTGSILSSHYVLVWSFNVNGQAQNLEISELPELRTFATPLRIFDEKKKSQFLIVGLPLILLSLLFMISLWIMYYIKRKKFGEILEDWEHEYGPHRFKFKDLYFATKGFREKGLFGVGGFGRVYKGVMPGSKLEVAVKRVSHESRQGMREFVSEIVSIGRLRHRNLVPLLGYCRRKGELLLVYDYMPNGSLDNHLYNQPKVTLNWSQRFRIIKGVASGLFYLHEEWEQVVIHRDIKASNVLLDGELNGRLGDFGLARLYDHGADPHTTHLVGTIGYLAPEHIRTGKATKFSDVFSFGAFLLEVVCGRRPISCVGENESLILVDYVFECWKSGEILEAKDVYLGTNYVSEEVELVLKLGLLCSHSEPLARPSMRQVVQYLERDIALPDLSSLSLSSSGLTFGYQECVDDKTMPYTSVSIAESVLSGGR