Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene001039.t1 | XP_013453326.1 | 93.3 | 1662 | 109 | 1 | 1 | 1659 | 1 | 1662 | 0.00E+00 | 2243 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene001039.t1 | F4JIF4 | 36.2 | 1738 | 1002 | 22 | 1 | 1659 | 1 | 1710 | 1.0e-187 | 659.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene001039.t1 | A0A072UNF2 | 93.3 | 1662 | 109 | 1 | 1 | 1659 | 1 | 1662 | 0.0e+00 | 2243.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene001039 | MS.gene50543 | PPI |
| MS.gene001039 | MS.gene49383 | PPI |
| MS.gene001039 | MS.gene020272 | PPI |
| MS.gene018133 | MS.gene001039 | PPI |
| MS.gene001039 | MS.gene43396 | PPI |
| MS.gene001039 | MS.gene39950 | PPI |
| MS.gene036195 | MS.gene001039 | PPI |
| MS.gene001039 | MS.gene054880 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene001039.t1 | MTR_5g006520 | 95.668 | 1662 | 69 | 1 | 1 | 1659 | 1 | 1662 | 0.0 | 3114 |
| MS.gene001039.t1 | MTR_5g006520 | 95.652 | 1656 | 69 | 1 | 1 | 1653 | 1 | 1656 | 0.0 | 3095 |
| MS.gene001039.t1 | MTR_1g103160 | 57.334 | 1793 | 617 | 18 | 1 | 1659 | 1 | 1779 | 0.0 | 1819 |
| MS.gene001039.t1 | MTR_1g103160 | 57.359 | 1787 | 614 | 18 | 7 | 1659 | 4 | 1776 | 0.0 | 1813 |
| MS.gene001039.t1 | MTR_1g103160 | 56.826 | 1758 | 611 | 18 | 36 | 1659 | 1 | 1744 | 0.0 | 1752 |
| MS.gene001039.t1 | MTR_1g071540 | 36.079 | 1821 | 973 | 22 | 2 | 1659 | 4 | 1796 | 0.0 | 939 |
| MS.gene001039.t1 | MTR_7g095410 | 33.566 | 1859 | 950 | 39 | 1 | 1659 | 1 | 1774 | 0.0 | 752 |
| MS.gene001039.t1 | MTR_7g095410 | 33.370 | 1822 | 985 | 36 | 1 | 1659 | 1 | 1756 | 0.0 | 738 |
| MS.gene001039.t1 | MTR_7g095410 | 32.978 | 1783 | 974 | 35 | 36 | 1659 | 1 | 1721 | 0.0 | 692 |
| MS.gene001039.t1 | MTR_5g075490 | 75.862 | 87 | 21 | 0 | 8 | 94 | 16 | 102 | 6.55e-39 | 155 |
| MS.gene001039.t1 | MTR_5g032060 | 56.757 | 111 | 48 | 0 | 13 | 123 | 10 | 120 | 4.64e-35 | 147 |
| MS.gene001039.t1 | MTR_8g471130 | 30.921 | 304 | 165 | 5 | 13 | 279 | 10 | 305 | 6.31e-33 | 139 |
| MS.gene001039.t1 | MTR_5g066340 | 29.818 | 275 | 148 | 6 | 13 | 251 | 10 | 275 | 3.38e-29 | 127 |
| MS.gene001039.t1 | MTR_7g108070 | 41.279 | 172 | 77 | 5 | 14 | 161 | 10 | 181 | 1.36e-26 | 112 |
| MS.gene001039.t1 | MTR_3g100190 | 33.333 | 273 | 121 | 10 | 21 | 244 | 13 | 273 | 2.52e-24 | 111 |
| MS.gene001039.t1 | MTR_1g088965 | 55.696 | 79 | 34 | 1 | 15 | 92 | 17 | 95 | 1.13e-22 | 104 |
| MS.gene001039.t1 | MTR_3g467610 | 51.807 | 83 | 37 | 1 | 34 | 116 | 13 | 92 | 6.42e-19 | 92.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene001039.t1 | AT3G22790 | 41.313 | 1767 | 890 | 26 | 1 | 1659 | 1 | 1728 | 0.0 | 1066 |
| MS.gene001039.t1 | AT3G22790 | 41.313 | 1767 | 890 | 26 | 1 | 1659 | 1 | 1728 | 0.0 | 1066 |
| MS.gene001039.t1 | AT3G22790 | 41.313 | 1767 | 890 | 26 | 1 | 1659 | 1 | 1728 | 0.0 | 1066 |
| MS.gene001039.t1 | AT4G14760 | 39.061 | 1746 | 941 | 23 | 1 | 1659 | 1 | 1710 | 0.0 | 997 |
| MS.gene001039.t1 | AT4G14760 | 39.061 | 1746 | 941 | 23 | 1 | 1659 | 1 | 1710 | 0.0 | 997 |
| MS.gene001039.t1 | AT4G14760 | 39.061 | 1746 | 941 | 23 | 1 | 1659 | 1 | 1710 | 0.0 | 997 |
| MS.gene001039.t1 | AT4G14760 | 39.061 | 1746 | 941 | 23 | 1 | 1659 | 1 | 1710 | 0.0 | 997 |
| MS.gene001039.t1 | AT1G03080 | 33.923 | 1810 | 965 | 27 | 1 | 1657 | 1 | 1732 | 0.0 | 810 |
| MS.gene001039.t1 | AT1G03080 | 33.923 | 1810 | 965 | 27 | 1 | 1657 | 1 | 1732 | 0.0 | 810 |
| MS.gene001039.t1 | AT1G03080 | 33.923 | 1810 | 965 | 27 | 1 | 1657 | 1 | 1732 | 0.0 | 810 |
| MS.gene001039.t1 | AT4G02710 | 37.986 | 566 | 278 | 4 | 1 | 493 | 1 | 566 | 4.34e-114 | 390 |
| MS.gene001039.t1 | AT4G02710 | 27.802 | 464 | 225 | 19 | 1203 | 1643 | 703 | 1079 | 1.95e-24 | 112 |
| MS.gene001039.t1 | AT2G30500 | 65.591 | 93 | 32 | 0 | 7 | 99 | 15 | 107 | 2.44e-36 | 146 |
| MS.gene001039.t1 | AT2G30500 | 65.591 | 93 | 32 | 0 | 7 | 99 | 15 | 107 | 2.44e-36 | 146 |
| MS.gene001039.t1 | AT2G30500 | 65.591 | 93 | 32 | 0 | 7 | 99 | 14 | 106 | 2.59e-36 | 146 |
| MS.gene001039.t1 | AT2G22560 | 37.168 | 226 | 107 | 4 | 13 | 203 | 10 | 235 | 1.54e-33 | 141 |
| MS.gene001039.t1 | AT5G10500 | 55.856 | 111 | 44 | 2 | 13 | 118 | 10 | 120 | 6.22e-33 | 139 |
| MS.gene001039.t1 | AT1G58215 | 28.000 | 525 | 264 | 14 | 13 | 484 | 10 | 473 | 1.82e-32 | 138 |
| MS.gene001039.t1 | AT5G58320 | 62.921 | 89 | 33 | 0 | 8 | 96 | 16 | 104 | 1.17e-29 | 126 |
| MS.gene001039.t1 | AT5G58320 | 62.921 | 89 | 33 | 0 | 8 | 96 | 16 | 104 | 1.17e-29 | 126 |
| MS.gene001039.t1 | AT5G58320 | 62.921 | 89 | 33 | 0 | 8 | 96 | 16 | 104 | 1.42e-29 | 126 |
| MS.gene001039.t1 | AT5G58320 | 62.921 | 89 | 33 | 0 | 8 | 96 | 16 | 104 | 1.42e-29 | 126 |
| MS.gene001039.t1 | AT1G09720 | 55.000 | 100 | 45 | 0 | 13 | 112 | 10 | 109 | 1.85e-29 | 128 |
| MS.gene001039.t1 | AT2G47920 | 60.000 | 75 | 29 | 1 | 15 | 88 | 10 | 84 | 1.27e-24 | 104 |
| MS.gene001039.t1 | AT2G47920 | 60.000 | 75 | 29 | 1 | 15 | 88 | 10 | 84 | 1.27e-24 | 104 |
| MS.gene001039.t1 | AT1G03470 | 51.579 | 95 | 45 | 1 | 15 | 108 | 8 | 102 | 1.54e-24 | 105 |
| MS.gene001039.t1 | AT1G03470 | 51.579 | 95 | 45 | 1 | 15 | 108 | 8 | 102 | 1.54e-24 | 105 |
| MS.gene001039.t1 | AT1G03470 | 51.579 | 95 | 45 | 1 | 15 | 108 | 8 | 102 | 1.54e-24 | 105 |
| MS.gene001039.t1 | AT1G03470 | 51.579 | 95 | 45 | 1 | 15 | 108 | 8 | 102 | 1.54e-24 | 105 |
| MS.gene001039.t1 | AT5G58320 | 65.574 | 61 | 21 | 0 | 36 | 96 | 1 | 61 | 1.18e-18 | 91.7 |
| MS.gene001039.t1 | AT4G03153 | 41.026 | 78 | 41 | 2 | 15 | 87 | 7 | 84 | 1.42e-13 | 72.0 |
Find 240 sgRNAs with CRISPR-Local
Find 369 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAAGAACACCACACACTTTA+TGG | 0.118574 | 5.4:+2242846 | None:intergenic |
| GTTAAGATCTGTTTCCATTT+TGG | 0.146184 | 5.4:+2244896 | None:intergenic |
| CTTGCTTTGGAGCTTAAATA+TGG | 0.167455 | 5.4:-2244111 | MS.gene001039:CDS |
| ATGTTTCATTTGCTTCATTA+AGG | 0.229175 | 5.4:+2241922 | None:intergenic |
| ATCCTTATCAGACTGGATTT+TGG | 0.232815 | 5.4:+2244959 | None:intergenic |
| GCAATTTCCAAACTTGAATA+TGG | 0.233837 | 5.4:+2241162 | None:intergenic |
| CCAATACATATTGCTGAAAT+TGG | 0.237091 | 5.4:-2240461 | MS.gene001039:CDS |
| TGAAGCGCGACTGGCAAATT+TGG | 0.240493 | 5.4:-2243152 | MS.gene001039:CDS |
| TGGCTTCTGGAAAATCTTAC+AGG | 0.247941 | 5.4:-2246678 | MS.gene001039:intron |
| TCCTGAACACTCCAAGTTCT+TGG | 0.249018 | 5.4:+2242189 | None:intergenic |
| ATTTGTTCAGAACCTCTTCT+TGG | 0.257824 | 5.4:+2240514 | None:intergenic |
| CCTGGAGAAAATATCTAAAA+TGG | 0.258324 | 5.4:-2244445 | MS.gene001039:CDS |
| TTTGGAGAAGTTATCCAAAA+TGG | 0.271104 | 5.4:-2244910 | MS.gene001039:CDS |
| GAAGTTAGCTATTCTTAAAA+TGG | 0.276694 | 5.4:-2240722 | MS.gene001039:CDS |
| CTCTGGTAAGTTCTTGCTTT+AGG | 0.278270 | 5.4:+2244679 | None:intergenic |
| AGTTTACTGGAAAGTGAAAT+TGG | 0.278527 | 5.4:-2241633 | MS.gene001039:CDS |
| GAGAATTAAATCAGGTGATT+TGG | 0.295548 | 5.4:-2243416 | MS.gene001039:CDS |
| AGCTCTAAGCAACCTCAATT+TGG | 0.303357 | 5.4:-2242303 | MS.gene001039:CDS |
| TACAGATGCCGCAAAAGAAT+TGG | 0.304958 | 5.4:+2243783 | None:intergenic |
| TTGCGTGTTTGTGGATGTTC+GGG | 0.306727 | 5.4:-2240370 | MS.gene001039:CDS |
| CTCTTCCTTAAAATCTTGTT+TGG | 0.307809 | 5.4:+2244059 | None:intergenic |
| AATTCCAATATCGCGTATAT+TGG | 0.307942 | 5.4:-2242777 | MS.gene001039:CDS |
| TAGAATCAGAAAGTTTAAAA+TGG | 0.314422 | 5.4:-2242873 | MS.gene001039:CDS |
| CTGAGGATTGAAGTAGTAAA+TGG | 0.318161 | 5.4:-2242530 | MS.gene001039:CDS |
| ACGAAGCTTCGCCTTTAGAT+AGG | 0.321073 | 5.4:-2240543 | MS.gene001039:CDS |
| AGTCCAGACGCTTATATTCT+TGG | 0.322787 | 5.4:-2246737 | MS.gene001039:CDS |
| TAGAGCACATTTCCCGCCTT+TGG | 0.324061 | 5.4:-2241542 | MS.gene001039:CDS |
| ACCAAGAACTTGGAGTGTTC+AGG | 0.325193 | 5.4:-2242190 | MS.gene001039:CDS |
| GAGAGAAATAATCAGTTTAC+TGG | 0.327774 | 5.4:-2241646 | MS.gene001039:CDS |
| ATCATTGTTTAGGAATGTTT+CGG | 0.333177 | 5.4:-2242387 | MS.gene001039:CDS |
| TTTGGCCAGGGCTTCCCTTA+AGG | 0.336813 | 5.4:+2244977 | None:intergenic |
| AAACCGAAATCTTCAGTTAG+AGG | 0.343043 | 5.4:-2244310 | MS.gene001039:CDS |
| TTGTCCAATATACGCGATAT+TGG | 0.344897 | 5.4:+2242773 | None:intergenic |
| AAGTTGAACAACACAGGGTT+AGG | 0.344929 | 5.4:-2241869 | MS.gene001039:CDS |
| ATCGACTCCATATTCAAGTT+TGG | 0.345717 | 5.4:-2241169 | MS.gene001039:CDS |
| CTTGAACAACTACAGAGTTT+AGG | 0.349038 | 5.4:-2243814 | MS.gene001039:CDS |
| TCCACTGTTGGCGCAGATAA+TGG | 0.352338 | 5.4:+2240919 | None:intergenic |
| AGAAAATGAGTTCAAACTTT+GGG | 0.353372 | 5.4:-2241814 | MS.gene001039:CDS |
| TGAAAGTATGCAGAAGATAT+TGG | 0.353641 | 5.4:-2243497 | MS.gene001039:CDS |
| TCTTCAGTACCAGGAGAGTT+TGG | 0.354498 | 5.4:-2244928 | MS.gene001039:CDS |
| GGACAAAGAGCTGCTGGAAA+TGG | 0.358674 | 5.4:-2242108 | MS.gene001039:CDS |
| ATGCTCTCGCTTCAAATACT+TGG | 0.370779 | 5.4:+2240993 | None:intergenic |
| GATGCTAAAATTGAGTTTGA+AGG | 0.371878 | 5.4:-2243442 | MS.gene001039:CDS |
| AAGCATTCTAATATCTCAAT+TGG | 0.373775 | 5.4:-2243341 | MS.gene001039:CDS |
| ATGTATTTGACCGCAATTCA+TGG | 0.376359 | 5.4:-2241086 | MS.gene001039:CDS |
| GATGAGAGTGATTCAGCATC+AGG | 0.377145 | 5.4:+2245068 | None:intergenic |
| TCCACTAACTTCATGAGTTC+CGG | 0.377336 | 5.4:+2245239 | None:intergenic |
| GATTCACCATGCGGTTCTTT+AGG | 0.377743 | 5.4:-2245092 | MS.gene001039:CDS |
| CCAATTTCAGCAATATGTAT+TGG | 0.380000 | 5.4:+2240461 | None:intergenic |
| AAAGAATTCAAAATGGCTTC+TGG | 0.380490 | 5.4:-2246691 | MS.gene001039:CDS |
| CAGTTGACATTGCATCTTTG+AGG | 0.381285 | 5.4:+2242363 | None:intergenic |
| AGAAGAGGTTCTGAACAAAT+AGG | 0.382023 | 5.4:-2240511 | MS.gene001039:CDS |
| TGCCATCGTTCAGATGATTC+TGG | 0.382173 | 5.4:-2240883 | MS.gene001039:CDS |
| GCTAAAAGAAGACTGCAAAA+AGG | 0.383534 | 5.4:-2243734 | MS.gene001039:CDS |
| TCTAAATTACTCCTCAGAAT+TGG | 0.384969 | 5.4:-2240854 | MS.gene001039:CDS |
| GTCTACTTTGGCAGCTCTGC+AGG | 0.385523 | 5.4:-2242483 | MS.gene001039:CDS |
| GACGCTTATATTCTTGGTGG+TGG | 0.386296 | 5.4:-2246731 | MS.gene001039:CDS |
| CAGCCTCTAACTGAAGATTT+CGG | 0.390968 | 5.4:+2244307 | None:intergenic |
| GCAAAATTGTATTGAAGAGT+TGG | 0.392630 | 5.4:-2243026 | MS.gene001039:CDS |
| TGATTTCTCATCAGCAAGAA+TGG | 0.397258 | 5.4:+2243549 | None:intergenic |
| ACCTTGCTGAGGAGAATTCC+AGG | 0.397551 | 5.4:-2244578 | MS.gene001039:CDS |
| GGTTAAGGTCATTGTTCAAA+TGG | 0.398571 | 5.4:+2242210 | None:intergenic |
| CATCGTTTCTTCTTTAAAAG+AGG | 0.398683 | 5.4:-2241577 | MS.gene001039:CDS |
| GCTGAGTTGGGAAATGCTTC+TGG | 0.399256 | 5.4:+2245134 | None:intergenic |
| ATTGCGTGTTTGTGGATGTT+CGG | 0.400094 | 5.4:-2240371 | MS.gene001039:CDS |
| GGAAGAGATGCAAGAGATTG+TGG | 0.402505 | 5.4:-2244043 | MS.gene001039:CDS |
| AGTTAATCCTCATTAGTTGA+TGG | 0.404823 | 5.4:+2240346 | None:intergenic |
| GCATGAAACTCATCAAATAA+AGG | 0.413368 | 5.4:-2243875 | MS.gene001039:CDS |
| ATTTGAAGCGAGAGCATAGA+AGG | 0.414336 | 5.4:-2240987 | MS.gene001039:CDS |
| ATGGTGAAGTTCAAACCTTA+AGG | 0.418626 | 5.4:-2244992 | MS.gene001039:CDS |
| CAAGTGTTTCAAGAAGAAAA+TGG | 0.420204 | 5.4:-2242431 | MS.gene001039:CDS |
| ATTGGACAAAATTGAGAGCT+TGG | 0.424439 | 5.4:-2242759 | MS.gene001039:CDS |
| ACACTCCAAGTTCTTGGTTA+AGG | 0.427564 | 5.4:+2242195 | None:intergenic |
| ACAGATGCCGCAAAAGAATT+GGG | 0.427925 | 5.4:+2243784 | None:intergenic |
| GCTTCGTCTGTTGAAGGACT+TGG | 0.429617 | 5.4:-2244088 | MS.gene001039:CDS |
| TCAAATTGAATCAGCTCTAC+AGG | 0.429684 | 5.4:-2244178 | MS.gene001039:CDS |
| GTAGAGAACTCTGTCCTCAT+AGG | 0.430720 | 5.4:-2242692 | MS.gene001039:CDS |
| AGATGACAAGAGGAGGATCT+TGG | 0.431001 | 5.4:-2240767 | MS.gene001039:CDS |
| AAGAAAATGAGTTCAAACTT+TGG | 0.431099 | 5.4:-2241815 | MS.gene001039:CDS |
| GAAGGTTTGAGAATTAAATC+AGG | 0.432749 | 5.4:-2243424 | MS.gene001039:CDS |
| TTGAACTTCTAGAGGAGAAC+AGG | 0.433283 | 5.4:-2242556 | MS.gene001039:CDS |
| CTTCAGCTCCTCAATATGTC+TGG | 0.433503 | 5.4:+2242043 | None:intergenic |
| ATTGGACATAGAGAAGGAAT+TGG | 0.436742 | 5.4:-2240836 | MS.gene001039:CDS |
| TAGAATGTAATATGCTGAGT+TGG | 0.437923 | 5.4:+2245121 | None:intergenic |
| ATTGGAGAATAATACCTTGC+TGG | 0.438016 | 5.4:-2243479 | MS.gene001039:CDS |
| GACTGCAAACTCTGATGCAT+GGG | 0.439795 | 5.4:-2244218 | MS.gene001039:CDS |
| AGAATGTAATATGCTGAGTT+GGG | 0.440026 | 5.4:+2245122 | None:intergenic |
| TGATAAAGTAATTTCGGAGC+TGG | 0.440893 | 5.4:-2242942 | MS.gene001039:CDS |
| ATATGGGCTTCGTCTGTTGA+AGG | 0.446717 | 5.4:-2244094 | MS.gene001039:CDS |
| TGAAAAGAAGGTTACAAAGT+TGG | 0.446886 | 5.4:-2243290 | MS.gene001039:CDS |
| TTGCTTTGGAGCTTAAATAT+GGG | 0.447982 | 5.4:-2244110 | MS.gene001039:CDS |
| TGGTGAAGTTCAAACCTTAA+GGG | 0.449648 | 5.4:-2244991 | MS.gene001039:CDS |
| AGAAGGAAATTGCGTGTTTG+TGG | 0.450411 | 5.4:-2240379 | MS.gene001039:CDS |
| AATTTGATCATTAAGCATCC+TGG | 0.454222 | 5.4:+2244560 | None:intergenic |
| GAGAGATACGATCATGCAAT+GGG | 0.454331 | 5.4:-2245185 | MS.gene001039:CDS |
| AGTAAGTATAAATGATCAAA+TGG | 0.457953 | 5.4:-2240581 | MS.gene001039:CDS |
| AGCAAGGTTACTGAGCTTAC+TGG | 0.458049 | 5.4:-2241726 | MS.gene001039:CDS |
| GGACTGAATGATGAGTTAGA+TGG | 0.458324 | 5.4:-2243631 | MS.gene001039:CDS |
| GGAGCAAAGAAATCTTGCTT+TGG | 0.462130 | 5.4:-2244124 | MS.gene001039:CDS |
| ATAGTCCAAAGAATTCAAAA+TGG | 0.462610 | 5.4:-2246698 | MS.gene001039:CDS |
| ACACTCAAGTGAAGCGCGAC+TGG | 0.463044 | 5.4:-2243161 | MS.gene001039:CDS |
| AATAGGAAAGTTGCAGTTTG+AGG | 0.464053 | 5.4:-2240494 | MS.gene001039:CDS |
| TCTTGAAAAGATTCCAATGT+TGG | 0.464403 | 5.4:-2244613 | MS.gene001039:CDS |
| ATGGCTATGTTTCCGAAGAC+AGG | 0.465754 | 5.4:+2241335 | None:intergenic |
| TTTGATGGAAAATGCCTGTA+TGG | 0.469152 | 5.4:-2243668 | MS.gene001039:CDS |
| CTACAGGAAGAACAGCGGTT+GGG | 0.470417 | 5.4:-2243112 | MS.gene001039:CDS |
| TCTAGAAACTATAGCTAGAC+TGG | 0.470639 | 5.4:-2244742 | MS.gene001039:CDS |
| AGCAGATTCATTTGCAAGGA+GGG | 0.470880 | 5.4:-2245285 | MS.gene001039:CDS |
| ATAAGGATGCCGGTGAAGTT+CGG | 0.474892 | 5.4:-2244776 | MS.gene001039:CDS |
| TGTCCTTTACCATCACTGCC+TGG | 0.476564 | 5.4:-2244463 | MS.gene001039:CDS |
| ACTAAGTAACCTTGAAAAGA+AGG | 0.478266 | 5.4:-2243302 | MS.gene001039:CDS |
| GAGACTCGATGATGAAAGTT+CGG | 0.479116 | 5.4:-2241694 | MS.gene001039:CDS |
| AATGGAAATCTCTAAGTTGA+AGG | 0.480099 | 5.4:-2243959 | MS.gene001039:CDS |
| CAGACAGATTCTTGAACAAT+CGG | 0.480977 | 5.4:-2241979 | MS.gene001039:CDS |
| TTGAATTCTTTGGACTATTG+TGG | 0.481281 | 5.4:+2246703 | None:intergenic |
| AATTCAAGTCGTAATATTGA+AGG | 0.485384 | 5.4:-2244823 | MS.gene001039:CDS |
| TTTAGCACTGTTAGAAAGCA+AGG | 0.486773 | 5.4:-2241742 | MS.gene001039:CDS |
| TGCTCTCTTTCTTCAGTACC+AGG | 0.487980 | 5.4:-2244937 | MS.gene001039:CDS |
| AAATAGATCAAAGTCTACTT+TGG | 0.489817 | 5.4:-2242495 | MS.gene001039:CDS |
| TTGGAGAGGCTTTCCTCGGA+TGG | 0.491217 | 5.4:-2240748 | MS.gene001039:CDS |
| AGCTGCTGGAAATGGAGAAA+AGG | 0.491750 | 5.4:-2242100 | MS.gene001039:CDS |
| AGAGCACTTTGTGAACATCT+TGG | 0.491901 | 5.4:-2242242 | MS.gene001039:CDS |
| GAGGATGGACAAAGAGCTGC+TGG | 0.492868 | 5.4:-2242114 | MS.gene001039:CDS |
| CAGGGTTAGGGAAGAAGCAC+TGG | 0.498072 | 5.4:-2241856 | MS.gene001039:CDS |
| CTGCTAACGCACGGTATGCT+CGG | 0.498305 | 5.4:+2245207 | None:intergenic |
| TTTGATGAGTTTCATGCTTG+AGG | 0.499392 | 5.4:+2243881 | None:intergenic |
| GTTGTACTCTCAATCACAAA+AGG | 0.500411 | 5.4:-2244145 | MS.gene001039:CDS |
| GATCTTGGAGAGGCTTTCCT+CGG | 0.500969 | 5.4:-2240752 | MS.gene001039:CDS |
| GGTAGGCAATGGAGCGCAAA+AGG | 0.501322 | 5.4:-2241502 | MS.gene001039:intron |
| GGCCAAAATCCAGTCTGATA+AGG | 0.502051 | 5.4:-2244961 | MS.gene001039:CDS |
| AAGACATATAGAAGAAGTTG+AGG | 0.504227 | 5.4:-2240620 | MS.gene001039:CDS |
| TTGGACATAGAGAAGGAATT+GGG | 0.505480 | 5.4:-2240835 | MS.gene001039:CDS |
| CGAAGCTTCGCCTTTAGATA+GGG | 0.506565 | 5.4:-2240542 | MS.gene001039:CDS |
| TACAGGAAGAACAGCGGTTG+GGG | 0.507538 | 5.4:-2243111 | MS.gene001039:CDS |
| AATGACCTTAACCAAGAACT+TGG | 0.508324 | 5.4:-2242200 | MS.gene001039:CDS |
| CCAGACGCTTATATTCTTGG+TGG | 0.508563 | 5.4:-2246734 | MS.gene001039:CDS |
| TAACAGAGAAAATTCCATAC+AGG | 0.513474 | 5.4:+2243654 | None:intergenic |
| CTGAGGAAAACAACAACAAA+GGG | 0.513621 | 5.4:-2240438 | MS.gene001039:CDS |
| AGCAAATCTGAAACTCCATC+TGG | 0.515437 | 5.4:+2241279 | None:intergenic |
| CTTGGAATCTCCCTATCTAA+AGG | 0.516431 | 5.4:+2240532 | None:intergenic |
| CCACCAAGAATATAAGCGTC+TGG | 0.522303 | 5.4:+2246734 | None:intergenic |
| GCCGGAACTCATGAAGTTAG+TGG | 0.523321 | 5.4:-2245240 | MS.gene001039:CDS |
| AGAAATTCTGTGGTAGGCAA+TGG | 0.523726 | 5.4:-2241513 | MS.gene001039:CDS |
| TCAAATTGAAAGAACAGAGC+TGG | 0.523888 | 5.4:-2244544 | MS.gene001039:CDS |
| GATGCAGCTAAAAGCAGATA+AGG | 0.526767 | 5.4:-2244793 | MS.gene001039:CDS |
| GAATTTCAGCTTCACTTGCT+CGG | 0.526802 | 5.4:+2244841 | None:intergenic |
| GGAAGAACAGCGGTTGGGGA+AGG | 0.528099 | 5.4:-2243107 | MS.gene001039:CDS |
| ATTTGCTGACATTGCAGACA+AGG | 0.530180 | 5.4:-2241263 | MS.gene001039:CDS |
| AGACTGCAAACTCTGATGCA+TGG | 0.530484 | 5.4:-2244219 | MS.gene001039:CDS |
| ACATATTGAGGAGCTGAAGA+TGG | 0.533144 | 5.4:-2242039 | MS.gene001039:CDS |
| TCAAACCTTAAGGGAAGCCC+TGG | 0.533697 | 5.4:-2244982 | MS.gene001039:CDS |
| TAGTGATTGAGACCTGTCTT+CGG | 0.534595 | 5.4:-2241347 | MS.gene001039:CDS |
| GTTCAAACTTTGGGAGAATG+AGG | 0.536840 | 5.4:-2241805 | MS.gene001039:CDS |
| AAACAGGTATATTGTTGAGA+AGG | 0.538708 | 5.4:-2240396 | MS.gene001039:CDS |
| ATCATAGCATGGTCCACTGT+TGG | 0.538724 | 5.4:+2240907 | None:intergenic |
| AGAGAGCATCCTTATCAGAC+TGG | 0.539401 | 5.4:+2244952 | None:intergenic |
| GAATGAGTCAACTGAGAGGA+TGG | 0.539681 | 5.4:-2242129 | MS.gene001039:CDS |
| ACAAAGAAGAAAAGCAAGCA+AGG | 0.540703 | 5.4:-2240670 | MS.gene001039:CDS |
| CTGATTGTACCGAACTTCAC+CGG | 0.542922 | 5.4:+2244767 | None:intergenic |
| AGCAGTTGAAAAGATTATGA+TGG | 0.543384 | 5.4:-2241235 | MS.gene001039:CDS |
| GAAAGTGTGTTAATACCAGA+TGG | 0.545253 | 5.4:-2241294 | MS.gene001039:CDS |
| GAATCTAGTCCACGTACTAC+AGG | 0.548695 | 5.4:-2243128 | MS.gene001039:CDS |
| GATTGAAGTAGTAAATGGAC+TGG | 0.549223 | 5.4:-2242525 | MS.gene001039:CDS |
| TGCTTAGAGCTAGTACCTCA+TGG | 0.550458 | 5.4:+2242315 | None:intergenic |
| GGAGTCAATGTTATCTCAGA+AGG | 0.551468 | 5.4:-2244721 | MS.gene001039:CDS |
| ATAACTTCTCCAAACTCTCC+TGG | 0.555879 | 5.4:+2244919 | None:intergenic |
| CTTCTCTATGTCCAATTCTG+AGG | 0.557116 | 5.4:+2240843 | None:intergenic |
| CATATTGCTGAAATTGGCTG+AGG | 0.557283 | 5.4:-2240455 | MS.gene001039:CDS |
| AAGTGAAATTGGAGAACTGA+AGG | 0.558589 | 5.4:-2241622 | MS.gene001039:CDS |
| ACTAAAAGAAATTCTGTGGT+AGG | 0.558630 | 5.4:-2241519 | MS.gene001039:CDS |
| CTTCACTTGCTCGGTCATCA+AGG | 0.559018 | 5.4:+2244850 | None:intergenic |
| TGGATTGAGAGGAACAGTGA+AGG | 0.560139 | 5.4:-2243611 | MS.gene001039:CDS |
| AATGATCAAGCTCATTGAAG+AGG | 0.561562 | 5.4:-2245309 | MS.gene001039:CDS |
| CTTCAGATTGATTCAGACGG+AGG | 0.562174 | 5.4:-2242827 | MS.gene001039:CDS |
| GATAGGGAGATTCCAAGAAG+AGG | 0.569385 | 5.4:-2240526 | MS.gene001039:CDS |
| TCATCCACATTGCGATCAAG+TGG | 0.569692 | 5.4:+2241024 | None:intergenic |
| TTCTCTAGTGAAAAGTCAAG+AGG | 0.570064 | 5.4:-2242732 | MS.gene001039:CDS |
| ACTACAGGAAGAACAGCGGT+TGG | 0.571147 | 5.4:-2243113 | MS.gene001039:CDS |
| TCTCCAGGCAGTGATGGTAA+AGG | 0.571181 | 5.4:+2244460 | None:intergenic |
| AGCTCTCATAAACCAAATTG+AGG | 0.574202 | 5.4:+2242291 | None:intergenic |
| GATGAGTTAGATGGATTGAG+AGG | 0.575363 | 5.4:-2243622 | MS.gene001039:CDS |
| ACCATTATCTGCGCCAACAG+TGG | 0.576959 | 5.4:-2240920 | MS.gene001039:CDS |
| AGTTGAACAACACAGGGTTA+GGG | 0.579217 | 5.4:-2241868 | MS.gene001039:CDS |
| TTCATGAAGTTGAACAACAC+AGG | 0.579740 | 5.4:-2241875 | MS.gene001039:CDS |
| AGCTAACTTCTGACCATCCG+AGG | 0.580497 | 5.4:+2240735 | None:intergenic |
| TACCAGAGTGGTAGTTCAGA+AGG | 0.583243 | 5.4:-2244664 | MS.gene001039:CDS |
| TTGGACTAAAAGAAATTCTG+TGG | 0.583886 | 5.4:-2241523 | MS.gene001039:CDS |
| CTAAAAGCAGATAAGGATGC+CGG | 0.584614 | 5.4:-2244786 | MS.gene001039:CDS |
| TCCTGGAATTCTCCTCAGCA+AGG | 0.585346 | 5.4:+2244577 | None:intergenic |
| AGAGAGATACGATCATGCAA+TGG | 0.585492 | 5.4:-2245186 | MS.gene001039:CDS |
| ACGCTTATATTCTTGGTGGT+GGG | 0.586298 | 5.4:-2246730 | MS.gene001039:CDS |
| CTCAGAATTGGACATAGAGA+AGG | 0.586349 | 5.4:-2240842 | MS.gene001039:CDS |
| AGCTGGAAGTTGAAACATTG+AGG | 0.587073 | 5.4:-2244527 | MS.gene001039:CDS |
| GCTGCTGAAGTGAACCTATG+AGG | 0.587509 | 5.4:+2242678 | None:intergenic |
| TTCAGATTGATTCAGACGGA+GGG | 0.591610 | 5.4:-2242826 | MS.gene001039:CDS |
| TTCGGGGCCATCAACTAATG+AGG | 0.597090 | 5.4:-2240353 | MS.gene001039:CDS |
| AGGAAGCAGATTCATTTGCA+AGG | 0.599111 | 5.4:-2245289 | MS.gene001039:CDS |
| AGGCTGAAAATTTAGTGCAG+AGG | 0.599417 | 5.4:-2244290 | MS.gene001039:CDS |
| GTTCTTCAGATTGATTCAGA+CGG | 0.599426 | 5.4:-2242830 | MS.gene001039:CDS |
| AGATAAAGTTGAACTTCTAG+AGG | 0.607959 | 5.4:-2242564 | MS.gene001039:CDS |
| AACTTAACTTCTCTTCCACC+AGG | 0.608738 | 5.4:-2243999 | MS.gene001039:CDS |
| CTTCAGCAGCATCAATCTGA+GGG | 0.616282 | 5.4:-2242665 | MS.gene001039:CDS |
| ACTTCAGCAGCATCAATCTG+AGG | 0.617113 | 5.4:-2242666 | MS.gene001039:CDS |
| AGAAAACTGAAGATGACAAG+AGG | 0.617447 | 5.4:-2240777 | MS.gene001039:CDS |
| TAGAGGAGAACAGGCAACTG+AGG | 0.619446 | 5.4:-2242547 | MS.gene001039:CDS |
| GCTGAGGAAAACAACAACAA+AGG | 0.622467 | 5.4:-2240439 | MS.gene001039:CDS |
| AAACTGAAGATGACAAGAGG+AGG | 0.626445 | 5.4:-2240774 | MS.gene001039:CDS |
| CAGAAATGTACTATAAGAAG+CGG | 0.627422 | 5.4:-2245262 | MS.gene001039:CDS |
| ATCCTTCTGAACTACCACTC+TGG | 0.627692 | 5.4:+2244662 | None:intergenic |
| ATGAGAGTGATTCAGCATCA+GGG | 0.629773 | 5.4:+2245069 | None:intergenic |
| ACTTTGGGAGAATGAGGCTG+CGG | 0.631172 | 5.4:-2241799 | MS.gene001039:CDS |
| AATGTACTATAAGAAGCGGC+CGG | 0.632296 | 5.4:-2245258 | MS.gene001039:CDS |
| GAACAAAATAAACCTTGCTG+AGG | 0.634726 | 5.4:-2244589 | MS.gene001039:CDS |
| TTCCAGAATCATCTGAACGA+TGG | 0.639813 | 5.4:+2240881 | None:intergenic |
| TGAATATGGAGTCGATTCTG+TGG | 0.641959 | 5.4:+2241176 | None:intergenic |
| GGAAATGGAGAAAAGGCTGA+AGG | 0.644612 | 5.4:-2242093 | MS.gene001039:CDS |
| CTAAATGATGATTCACCATG+CGG | 0.648235 | 5.4:-2245101 | MS.gene001039:CDS |
| AACGATGGCAGATCATAGCA+TGG | 0.653931 | 5.4:+2240896 | None:intergenic |
| TCATGAAGTTGAACAACACA+GGG | 0.656703 | 5.4:-2241874 | MS.gene001039:CDS |
| AAGGCACAAAATAATGCTAG+AGG | 0.660058 | 5.4:-2244873 | MS.gene001039:CDS |
| ACAAGAGGAGGATCTTGGAG+AGG | 0.666942 | 5.4:-2240762 | MS.gene001039:CDS |
| CGTATCTCTCTGCTAACGCA+CGG | 0.666945 | 5.4:+2245198 | None:intergenic |
| AAGCAGATTCATTTGCAAGG+AGG | 0.667881 | 5.4:-2245286 | MS.gene001039:CDS |
| GAGATACGATCATGCAATGG+GGG | 0.670489 | 5.4:-2245183 | MS.gene001039:CDS |
| AGTGAAATTGGAGAACTGAA+GGG | 0.674625 | 5.4:-2241621 | MS.gene001039:CDS |
| TCAGGGCCTAAAGAACCGCA+TGG | 0.677474 | 5.4:+2245086 | None:intergenic |
| ACTGCAAACTCTGATGCATG+GGG | 0.682602 | 5.4:-2244217 | MS.gene001039:CDS |
| AGGCTGAGATGATAGAATTG+CGG | 0.685463 | 5.4:-2242463 | MS.gene001039:CDS |
| CATTCCACTTGATCGCAATG+TGG | 0.687381 | 5.4:-2241028 | MS.gene001039:CDS |
| GCTGTTCTTCCTGTAGTACG+TGG | 0.694339 | 5.4:+2243119 | None:intergenic |
| GGAACTCATGAAGTTAGTGG+AGG | 0.698000 | 5.4:-2245237 | MS.gene001039:CDS |
| ATGGATATCCATAAAGTGTG+TGG | 0.698783 | 5.4:-2242854 | MS.gene001039:CDS |
| AGAGATACGATCATGCAATG+GGG | 0.707004 | 5.4:-2245184 | MS.gene001039:CDS |
| ATCTGAATGAGTCAACTGAG+AGG | 0.716151 | 5.4:-2242133 | MS.gene001039:CDS |
| AAAGCAAGAACTTACCAGAG+TGG | 0.717213 | 5.4:-2244676 | MS.gene001039:CDS |
| TCTGGACTCAGATTCTGACA+AGG | 0.717887 | 5.4:+2246752 | None:intergenic |
| AATGGAAACAGATCTTAACA+AGG | 0.722210 | 5.4:-2244892 | MS.gene001039:CDS |
| TGCGTGTTTGTGGATGTTCG+GGG | 0.733508 | 5.4:-2240369 | MS.gene001039:CDS |
| GAACAGTGCAATGTTCCATG+AGG | 0.738461 | 5.4:-2242330 | MS.gene001039:CDS |
| ACGTACTACAGGAAGAACAG+CGG | 0.777669 | 5.4:-2243117 | MS.gene001039:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GAAATTTACTAAATTATATT+AGG | + | chr5.4:2241623-2241642 | None:intergenic | 10.0% |
| !! | TTAGAGATATAAATATTTAT+AGG | - | chr5.4:2241191-2241210 | MS.gene001039:CDS | 10.0% |
| !!! | AATTTTGTTTTTTAGTTGTT+CGG | + | chr5.4:2242718-2242737 | None:intergenic | 15.0% |
| !!! | AGCATAATATGAAATTTTAA+TGG | + | chr5.4:2241749-2241768 | None:intergenic | 15.0% |
| !!! | ATTTTCTGATAAAGTAATTT+CGG | - | chr5.4:2244159-2244178 | MS.gene001039:CDS | 15.0% |
| !! | AAAAAACAAAATTGAGAAAG+AGG | - | chr5.4:2242725-2242744 | MS.gene001039:CDS | 20.0% |
| !! | AAAAGTTGACAATAGAAAAA+AGG | - | chr5.4:2245977-2245996 | MS.gene001039:intron | 20.0% |
| !! | AAATATTATTAAGGTAGCTT+CGG | - | chr5.4:2240713-2240732 | MS.gene001039:CDS | 20.0% |
| !! | AAATTATATTAGGGAATACA+GGG | + | chr5.4:2241613-2241632 | None:intergenic | 20.0% |
| !! | AGTAAGTATAAATGATCAAA+TGG | - | chr5.4:2246526-2246545 | MS.gene001039:intron | 20.0% |
| !! | CCTTCTGTAAAATATTATTA+AGG | - | chr5.4:2240704-2240723 | MS.gene001039:CDS | 20.0% |
| !! | TAAATTATATTAGGGAATAC+AGG | + | chr5.4:2241614-2241633 | None:intergenic | 20.0% |
| !! | TAAGAATTTACAAGATAGAA+TGG | + | chr5.4:2241658-2241677 | None:intergenic | 20.0% |
| !! | TAATTCATTGAAACATTCTT+TGG | - | chr5.4:2241121-2241140 | MS.gene001039:CDS | 20.0% |
| !! | TAGAATCAGAAAGTTTAAAA+TGG | - | chr5.4:2244234-2244253 | MS.gene001039:CDS | 20.0% |
| !!! | AAAATCAAAAGAAGTTTTGA+TGG | - | chr5.4:2243424-2243443 | MS.gene001039:CDS | 20.0% |
| !!! | AGTTGATATTTATAGAGTAT+AGG | + | chr5.4:2240780-2240799 | None:intergenic | 20.0% |
| !!! | ATATTTTTGAGAGACTAATT+CGG | + | chr5.4:2241022-2241041 | None:intergenic | 20.0% |
| !!! | ATTCAGATAAATCATTTTGT+TGG | - | chr5.4:2240854-2240873 | MS.gene001039:CDS | 20.0% |
| !!! | CCTTAATAATATTTTACAGA+AGG | + | chr5.4:2240707-2240726 | None:intergenic | 20.0% |
| !!! | TATGTGGAAAGTTATTATTT+TGG | + | chr5.4:2240664-2240683 | None:intergenic | 20.0% |
| !!! | TTCATCAATAACCTTATTTT+AGG | + | chr5.4:2246056-2246075 | None:intergenic | 20.0% |
| !!! | TTTTTTCTATTGTCAACTTT+TGG | + | chr5.4:2245978-2245997 | None:intergenic | 20.0% |
| ! | AAAGATTAACAACAAGCTTT+AGG | + | chr5.4:2241484-2241503 | None:intergenic | 25.0% |
| ! | AAATAGATCAAAGTCTACTT+TGG | - | chr5.4:2244612-2244631 | MS.gene001039:CDS | 25.0% |
| ! | AAGAAAATGAGTTCAAACTT+TGG | - | chr5.4:2245292-2245311 | MS.gene001039:CDS | 25.0% |
| ! | AAGCATTCTAATATCTCAAT+TGG | - | chr5.4:2243766-2243785 | MS.gene001039:CDS | 25.0% |
| ! | AATAGAATATCTCGAAAAAC+AGG | - | chr5.4:2246695-2246714 | MS.gene001039:CDS | 25.0% |
| ! | AATTCAAGTCGTAATATTGA+AGG | - | chr5.4:2242284-2242303 | MS.gene001039:CDS | 25.0% |
| ! | ACAAGACTTGAAAAAGAAAA+CGG | - | chr5.4:2246412-2246431 | MS.gene001039:intron | 25.0% |
| ! | ACATAATAAGTTCGTTGTTT+GGG | - | chr5.4:2241386-2241405 | MS.gene001039:intron | 25.0% |
| ! | ACGAGAAAAAATCATTGTTT+AGG | - | chr5.4:2244710-2244729 | MS.gene001039:CDS | 25.0% |
| ! | AGAAAATGAGTTCAAACTTT+GGG | - | chr5.4:2245293-2245312 | MS.gene001039:CDS | 25.0% |
| ! | ATAGTCCAAAGAATTCAAAA+TGG | - | chr5.4:2240409-2240428 | MS.gene001039:CDS | 25.0% |
| ! | ATATAGTTGAATCTCACTTT+AGG | - | chr5.4:2241355-2241374 | MS.gene001039:intron | 25.0% |
| ! | ATCATTGTTTAGGAATGTTT+CGG | - | chr5.4:2244720-2244739 | MS.gene001039:CDS | 25.0% |
| ! | ATCGATCAAAAAAGAATGAA+AGG | - | chr5.4:2242076-2242095 | MS.gene001039:CDS | 25.0% |
| ! | ATGTTTCATTTGCTTCATTA+AGG | + | chr5.4:2245188-2245207 | None:intergenic | 25.0% |
| ! | CGACAAATGTATATCTTTAA+AGG | - | chr5.4:2241096-2241115 | MS.gene001039:CDS | 25.0% |
| ! | GAAGTTAGCTATTCTTAAAA+TGG | - | chr5.4:2246385-2246404 | MS.gene001039:intron | 25.0% |
| ! | GGAGAAAAAAACCTAAAATA+AGG | - | chr5.4:2246042-2246061 | MS.gene001039:intron | 25.0% |
| ! | GTTAGTTGTTAAATTATTCG+CGG | - | chr5.4:2240556-2240575 | MS.gene001039:CDS | 25.0% |
| ! | GTTTAGCAAAAGAACAAATT+TGG | + | chr5.4:2241047-2241066 | None:intergenic | 25.0% |
| ! | TAGTAAATTTCACTGCAAAA+TGG | - | chr5.4:2241632-2241651 | MS.gene001039:CDS | 25.0% |
| ! | TGCAACAAATTATACAAATC+TGG | + | chr5.4:2240829-2240848 | None:intergenic | 25.0% |
| ! | TTTATAGAGTATAGGATGTA+TGG | + | chr5.4:2240772-2240791 | None:intergenic | 25.0% |
| !! | AATCATTTTGTTGGAGAAAT+AGG | - | chr5.4:2240863-2240882 | MS.gene001039:CDS | 25.0% |
| !! | ACTTTCCAAACAAGATTTTA+AGG | - | chr5.4:2243043-2243062 | MS.gene001039:CDS | 25.0% |
| !! | AGAACTTTTTGCTTCAATTT+TGG | - | chr5.4:2243895-2243914 | MS.gene001039:CDS | 25.0% |
| !! | ATCATTTTGTTGGAGAAATA+GGG | - | chr5.4:2240864-2240883 | MS.gene001039:CDS | 25.0% |
| !! | ATGAAATAAAACTTGCTTGT+TGG | - | chr5.4:2241430-2241449 | MS.gene001039:intron | 25.0% |
| !!! | ACTTTTAGCTATTACATATC+TGG | - | chr5.4:2241531-2241550 | MS.gene001039:CDS | 25.0% |
| !!! | CAAGCAAGTTTTATTTCATT+AGG | + | chr5.4:2241429-2241448 | None:intergenic | 25.0% |
| !!! | GTATATGAATATTTTTGTCC+AGG | - | chr5.4:2245734-2245753 | MS.gene001039:intron | 25.0% |
| !!! | TCTTTTAAAGAAGAAACGAT+GGG | + | chr5.4:2245531-2245550 | None:intergenic | 25.0% |
| !!! | TGGAAAGTTATTATTTTGGT+AGG | + | chr5.4:2240660-2240679 | None:intergenic | 25.0% |
| !!! | TTCTTTTTTGATCGATGAAT+TGG | + | chr5.4:2242072-2242091 | None:intergenic | 25.0% |
| !!! | TTTAATGGACTAAACTATAG+AGG | + | chr5.4:2241734-2241753 | None:intergenic | 25.0% |
| !!! | TTTATTTTGTTCTCCAACAT+TGG | + | chr5.4:2242510-2242529 | None:intergenic | 25.0% |
| AAAAAAGGAGATTGAACTTG+TGG | - | chr5.4:2245992-2246011 | MS.gene001039:intron | 30.0% | |
| AAACAGGTATATTGTTGAGA+AGG | - | chr5.4:2246711-2246730 | MS.gene001039:CDS | 30.0% | |
| AAAGAATTCAAAATGGCTTC+TGG | - | chr5.4:2240416-2240435 | MS.gene001039:CDS | 30.0% | |
| AAGACATATAGAAGAAGTTG+AGG | - | chr5.4:2246487-2246506 | MS.gene001039:intron | 30.0% | |
| AAGTATGCACCATAGATAAT+AGG | + | chr5.4:2241515-2241534 | None:intergenic | 30.0% | |
| AATGGAAACAGATCTTAACA+AGG | - | chr5.4:2242215-2242234 | MS.gene001039:CDS | 30.0% | |
| AATTCCAATATCGCGTATAT+TGG | - | chr5.4:2244330-2244349 | MS.gene001039:CDS | 30.0% | |
| AATTTGATCATTAAGCATCC+TGG | + | chr5.4:2242550-2242569 | None:intergenic | 30.0% | |
| ACTAAAAGAAATTCTGTGGT+AGG | - | chr5.4:2245588-2245607 | MS.gene001039:intron | 30.0% | |
| ACTAAGTAACCTTGAAAAGA+AGG | - | chr5.4:2243805-2243824 | MS.gene001039:CDS | 30.0% | |
| AGAATGTAATATGCTGAGTT+GGG | + | chr5.4:2241988-2242007 | None:intergenic | 30.0% | |
| AGATAAAGTTGAACTTCTAG+AGG | - | chr5.4:2244543-2244562 | MS.gene001039:CDS | 30.0% | |
| AGCAGTTGAAAAGATTATGA+TGG | - | chr5.4:2245872-2245891 | MS.gene001039:intron | 30.0% | |
| AGGAGTTCAGAAAAATCTAA+TGG | - | chr5.4:2242096-2242115 | MS.gene001039:CDS | 30.0% | |
| AGTTTACTGGAAAGTGAAAT+TGG | - | chr5.4:2245474-2245493 | MS.gene001039:intron | 30.0% | |
| ATTCTGATCGAATAAATCCA+TGG | + | chr5.4:2241254-2241273 | None:intergenic | 30.0% | |
| ATTGAGGAAAAATCTTTCTG+AGG | - | chr5.4:2242596-2242615 | MS.gene001039:CDS | 30.0% | |
| CAAGTGTTTCAAGAAGAAAA+TGG | - | chr5.4:2244676-2244695 | MS.gene001039:CDS | 30.0% | |
| CAGAAATGTACTATAAGAAG+CGG | - | chr5.4:2241845-2241864 | MS.gene001039:CDS | 30.0% | |
| CCAATACATATTGCTGAAAT+TGG | - | chr5.4:2246646-2246665 | MS.gene001039:intron | 30.0% | |
| CCAATTTCAGCAATATGTAT+TGG | + | chr5.4:2246649-2246668 | None:intergenic | 30.0% | |
| CCTGGAGAAAATATCTAAAA+TGG | - | chr5.4:2242662-2242681 | MS.gene001039:CDS | 30.0% | |
| CTCTTCCTTAAAATCTTGTT+TGG | + | chr5.4:2243051-2243070 | None:intergenic | 30.0% | |
| GAAGGTTTGAGAATTAAATC+AGG | - | chr5.4:2243683-2243702 | MS.gene001039:CDS | 30.0% | |
| GACATAATAAGTTCGTTGTT+TGG | - | chr5.4:2241385-2241404 | MS.gene001039:intron | 30.0% | |
| GAGAATTAAATCAGGTGATT+TGG | - | chr5.4:2243691-2243710 | MS.gene001039:CDS | 30.0% | |
| GAGAGAAATAATCAGTTTAC+TGG | - | chr5.4:2245461-2245480 | MS.gene001039:intron | 30.0% | |
| GATGCTAAAATTGAGTTTGA+AGG | - | chr5.4:2243665-2243684 | MS.gene001039:CDS | 30.0% | |
| GCAAAATTGTATTGAAGAGT+TGG | - | chr5.4:2244081-2244100 | MS.gene001039:CDS | 30.0% | |
| GCAATTTCCAAACTTGAATA+TGG | + | chr5.4:2245948-2245967 | None:intergenic | 30.0% | |
| GCATGAAACTCATCAAATAA+AGG | - | chr5.4:2243232-2243251 | MS.gene001039:CDS | 30.0% | |
| GTCATTAAAAAAGCAGCAAA+TGG | - | chr5.4:2243130-2243149 | MS.gene001039:CDS | 30.0% | |
| TAACAGAGAAAATTCCATAC+AGG | + | chr5.4:2243456-2243475 | None:intergenic | 30.0% | |
| TAGAATGTAATATGCTGAGT+TGG | + | chr5.4:2241989-2242008 | None:intergenic | 30.0% | |
| TATACAAATCTGGTGAAACT+TGG | + | chr5.4:2240819-2240838 | None:intergenic | 30.0% | |
| TCTAAATTACTCCTCAGAAT+TGG | - | chr5.4:2246253-2246272 | MS.gene001039:intron | 30.0% | |
| TCTTGAAAAGATTCCAATGT+TGG | - | chr5.4:2242494-2242513 | MS.gene001039:CDS | 30.0% | |
| TGAAAAACATCGTGATATGT+TGG | - | chr5.4:2242767-2242786 | MS.gene001039:CDS | 30.0% | |
| TGAAAAGAAGGTTACAAAGT+TGG | - | chr5.4:2243817-2243836 | MS.gene001039:CDS | 30.0% | |
| TGTGAAAGATACTATCAGTA+AGG | - | chr5.4:2241683-2241702 | MS.gene001039:CDS | 30.0% | |
| TTCATTGAAACATTCTTTGG+AGG | - | chr5.4:2241124-2241143 | MS.gene001039:CDS | 30.0% | |
| TTGAATTCTTTGGACTATTG+TGG | + | chr5.4:2240407-2240426 | None:intergenic | 30.0% | |
| TTGGACTAAAAGAAATTCTG+TGG | - | chr5.4:2245584-2245603 | MS.gene001039:intron | 30.0% | |
| TTTACCACACCTATTATCTA+TGG | - | chr5.4:2241503-2241522 | MS.gene001039:CDS | 30.0% | |
| TTTAGCTATTACATATCTGG+TGG | - | chr5.4:2241534-2241553 | MS.gene001039:CDS | 30.0% | |
| TTTGGAGAAGTTATCCAAAA+TGG | - | chr5.4:2242197-2242216 | MS.gene001039:CDS | 30.0% | |
| ! | AATGGAAATCTCTAAGTTGA+AGG | - | chr5.4:2243148-2243167 | MS.gene001039:CDS | 30.0% |
| ! | AATTTCTTTTAGTCCAAAGG+CGG | + | chr5.4:2245581-2245600 | None:intergenic | 30.0% |
| ! | ACTTTGTAACCTTCTTTTCA+AGG | + | chr5.4:2243817-2243836 | None:intergenic | 30.0% |
| ! | ATTGTCAACTTTTGGATATG+TGG | + | chr5.4:2245970-2245989 | None:intergenic | 30.0% |
| ! | ATTTTTCTTCTTGGAGAACT+TGG | + | chr5.4:2243538-2243557 | None:intergenic | 30.0% |
| ! | CAGAATTTCTTTTAGTCCAA+AGG | + | chr5.4:2245584-2245603 | None:intergenic | 30.0% |
| ! | CATCGTTTCTTCTTTAAAAG+AGG | - | chr5.4:2245530-2245549 | MS.gene001039:intron | 30.0% |
| ! | CCATTTTAGATATTTTCTCC+AGG | + | chr5.4:2242665-2242684 | None:intergenic | 30.0% |
| ! | GTTAAGATCTGTTTCCATTT+TGG | + | chr5.4:2242214-2242233 | None:intergenic | 30.0% |
| ! | TGAAAGTATGCAGAAGATAT+TGG | - | chr5.4:2243610-2243629 | MS.gene001039:CDS | 30.0% |
| ! | TGATTTGGCAAAGAGAAAAA+GGG | + | chr5.4:2245679-2245698 | None:intergenic | 30.0% |
| ! | TGTATGGAATTTTCTCTGTT+AGG | - | chr5.4:2243455-2243474 | MS.gene001039:CDS | 30.0% |
| ! | TTTTTGATCGATGAATTGGT+CGG | + | chr5.4:2242068-2242087 | None:intergenic | 30.0% |
| !! | AAGTTCTTGCTTTAGGTTTT+TGG | + | chr5.4:2242424-2242443 | None:intergenic | 30.0% |
| !! | AGAAGCCATTTTGAATTCTT+TGG | + | chr5.4:2240417-2240436 | None:intergenic | 30.0% |
| !! | CAAGAATGGATTTTTCTTCT+TGG | + | chr5.4:2243547-2243566 | None:intergenic | 30.0% |
| !! | CTCTTTTAAAGAAGAAACGA+TGG | + | chr5.4:2245532-2245551 | None:intergenic | 30.0% |
| !! | TTGCTTTGGAGCTTAAATAT+GGG | - | chr5.4:2242997-2243016 | MS.gene001039:CDS | 30.0% |
| !! | TTTGTTGTTGTAATTTCCCT+AGG | - | chr5.4:2241456-2241475 | MS.gene001039:intron | 30.0% |
| !!! | GCAAGTTTTATTTCATTAGG+TGG | + | chr5.4:2241426-2241445 | None:intergenic | 30.0% |
| !!! | GTTTTTTTCTCCATGAATTG+CGG | + | chr5.4:2246034-2246053 | None:intergenic | 30.0% |
| !!! | TATTTTGGTAGGTTTTGTTG+TGG | + | chr5.4:2240649-2240668 | None:intergenic | 30.0% |
| AAACCGAAATCTTCAGTTAG+AGG | - | chr5.4:2242797-2242816 | MS.gene001039:CDS | 35.0% | |
| AACCACTTTAGTCGTTCATA+TGG | - | chr5.4:2241064-2241083 | MS.gene001039:CDS | 35.0% | |
| AAGGCACAAAATAATGCTAG+AGG | - | chr5.4:2242234-2242253 | MS.gene001039:CDS | 35.0% | |
| AAGTGAAATTGGAGAACTGA+AGG | - | chr5.4:2245485-2245504 | MS.gene001039:intron | 35.0% | |
| AATAGGAAAGTTGCAGTTTG+AGG | - | chr5.4:2246613-2246632 | MS.gene001039:intron | 35.0% | |
| AATGACCTTAACCAAGAACT+TGG | - | chr5.4:2244907-2244926 | MS.gene001039:CDS | 35.0% | |
| AATGATCAAGCTCATTGAAG+AGG | - | chr5.4:2241798-2241817 | MS.gene001039:CDS | 35.0% | |
| ACAAAGAAGAAAAGCAAGCA+AGG | - | chr5.4:2246437-2246456 | MS.gene001039:intron | 35.0% | |
| ACTATTGTGCTTGAAGAATC+TGG | - | chr5.4:2240487-2240506 | MS.gene001039:CDS | 35.0% | |
| AGAAAACTGAAGATGACAAG+AGG | - | chr5.4:2246330-2246349 | MS.gene001039:intron | 35.0% | |
| AGAATTTGACACCATAATGG+AGG | - | chr5.4:2240745-2240764 | MS.gene001039:CDS | 35.0% | |
| AGCTCTCATAAACCAAATTG+AGG | + | chr5.4:2244819-2244838 | None:intergenic | 35.0% | |
| AGTCGTTCATATGGACATAT+TGG | - | chr5.4:2241073-2241092 | MS.gene001039:CDS | 35.0% | |
| AGTGAAATTGGAGAACTGAA+GGG | - | chr5.4:2245486-2245505 | MS.gene001039:intron | 35.0% | |
| ATCTGTCAGAGTTAGAGTAT+GGG | + | chr5.4:2241586-2241605 | None:intergenic | 35.0% | |
| ATGGATATCCATAAAGTGTG+TGG | - | chr5.4:2244253-2244272 | MS.gene001039:CDS | 35.0% | |
| ATGGTGAAGTTCAAACCTTA+AGG | - | chr5.4:2242115-2242134 | MS.gene001039:CDS | 35.0% | |
| ATGTATTTGACCGCAATTCA+TGG | - | chr5.4:2246021-2246040 | MS.gene001039:intron | 35.0% | |
| ATTGGACAAAATTGAGAGCT+TGG | - | chr5.4:2244348-2244367 | MS.gene001039:CDS | 35.0% | |
| ATTGGACATAGAGAAGGAAT+TGG | - | chr5.4:2246271-2246290 | MS.gene001039:intron | 35.0% | |
| ATTGGAGAATAATACCTTGC+TGG | - | chr5.4:2243628-2243647 | MS.gene001039:CDS | 35.0% | |
| ATTTGTTCAGAACCTCTTCT+TGG | + | chr5.4:2246596-2246615 | None:intergenic | 35.0% | |
| CAGACAGATTCTTGAACAAT+CGG | - | chr5.4:2245128-2245147 | MS.gene001039:CDS | 35.0% | |
| CTAAATGATGATTCACCATG+CGG | - | chr5.4:2242006-2242025 | MS.gene001039:CDS | 35.0% | |
| CTGAGGAAAACAACAACAAA+GGG | - | chr5.4:2246669-2246688 | MS.gene001039:intron | 35.0% | |
| CTGAGGATTGAAGTAGTAAA+TGG | - | chr5.4:2244577-2244596 | MS.gene001039:CDS | 35.0% | |
| CTTGAACAACTACAGAGTTT+AGG | - | chr5.4:2243293-2243312 | MS.gene001039:CDS | 35.0% | |
| GAACAAAATAAACCTTGCTG+AGG | - | chr5.4:2242518-2242537 | MS.gene001039:CDS | 35.0% | |
| GACAGTACACTAATCTATGA+GGG | + | chr5.4:2240970-2240989 | None:intergenic | 35.0% | |
| GATTGAAGTAGTAAATGGAC+TGG | - | chr5.4:2244582-2244601 | MS.gene001039:CDS | 35.0% | |
| GCTAAAAGAAGACTGCAAAA+AGG | - | chr5.4:2243373-2243392 | MS.gene001039:CDS | 35.0% | |
| GGAAGAAAAATATGCTGATG+TGG | - | chr5.4:2243838-2243857 | MS.gene001039:CDS | 35.0% | |
| GGTTAAGGTCATTGTTCAAA+TGG | + | chr5.4:2244900-2244919 | None:intergenic | 35.0% | |
| GTTGTACTCTCAATCACAAA+AGG | - | chr5.4:2242962-2242981 | MS.gene001039:CDS | 35.0% | |
| TCAAATTGAAAGAACAGAGC+TGG | - | chr5.4:2242563-2242582 | MS.gene001039:CDS | 35.0% | |
| TCAAATTGAATCAGCTCTAC+AGG | - | chr5.4:2242929-2242948 | MS.gene001039:CDS | 35.0% | |
| TCATGAAGTTGAACAACACA+GGG | - | chr5.4:2245233-2245252 | MS.gene001039:CDS | 35.0% | |
| TCTAGAAACTATAGCTAGAC+TGG | - | chr5.4:2242365-2242384 | MS.gene001039:CDS | 35.0% | |
| TGAATGTGAAAAACTCGTTG+AGG | - | chr5.4:2244129-2244148 | MS.gene001039:CDS | 35.0% | |
| TGACAGTACACTAATCTATG+AGG | + | chr5.4:2240971-2240990 | None:intergenic | 35.0% | |
| TGAGGGAGAAAAACTTAAGT+CGG | - | chr5.4:2244459-2244478 | MS.gene001039:CDS | 35.0% | |
| TGATAAAGTAATTTCGGAGC+TGG | - | chr5.4:2244165-2244184 | MS.gene001039:CDS | 35.0% | |
| TGATTTCTCATCAGCAAGAA+TGG | + | chr5.4:2243561-2243580 | None:intergenic | 35.0% | |
| TGCAAATTGTGAAGCTGATT+TGG | + | chr5.4:2245694-2245713 | None:intergenic | 35.0% | |
| TGGAGAATTTGACACCATAA+TGG | - | chr5.4:2240742-2240761 | MS.gene001039:CDS | 35.0% | |
| TGGTGAAGTTCAAACCTTAA+GGG | - | chr5.4:2242116-2242135 | MS.gene001039:CDS | 35.0% | |
| TTCATGAAGTTGAACAACAC+AGG | - | chr5.4:2245232-2245251 | MS.gene001039:CDS | 35.0% | |
| TTCTCTAGTGAAAAGTCAAG+AGG | - | chr5.4:2244375-2244394 | MS.gene001039:CDS | 35.0% | |
| TTGGACATAGAGAAGGAATT+GGG | - | chr5.4:2246272-2246291 | MS.gene001039:intron | 35.0% | |
| TTGTCCAATATACGCGATAT+TGG | + | chr5.4:2244337-2244356 | None:intergenic | 35.0% | |
| TTTAGCACTGTTAGAAAGCA+AGG | - | chr5.4:2245365-2245384 | MS.gene001039:intron | 35.0% | |
| TTTGATGAGTTTCATGCTTG+AGG | + | chr5.4:2243229-2243248 | None:intergenic | 35.0% | |
| TTTGATGGAAAATGCCTGTA+TGG | - | chr5.4:2243439-2243458 | MS.gene001039:CDS | 35.0% | |
| ! | AAGAGAATCAGAAAGTGCAT+AGG | + | chr5.4:2240896-2240915 | None:intergenic | 35.0% |
| ! | AGAGTTTTCCAGACATATTG+AGG | - | chr5.4:2245056-2245075 | MS.gene001039:CDS | 35.0% |
| ! | AGTGTTCAGGAAGAATTTTG+AGG | - | chr5.4:2244930-2244949 | MS.gene001039:CDS | 35.0% |
| ! | ATCCTTATCAGACTGGATTT+TGG | + | chr5.4:2242151-2242170 | None:intergenic | 35.0% |
| ! | ATCGACTCCATATTCAAGTT+TGG | - | chr5.4:2245938-2245957 | MS.gene001039:intron | 35.0% |
| ! | ATTTCTTTTAGTCCAAAGGC+GGG | + | chr5.4:2245580-2245599 | None:intergenic | 35.0% |
| ! | CATTTTCTCTTGCACTTTGA+TGG | + | chr5.4:2245794-2245813 | None:intergenic | 35.0% |
| ! | GAAAGTGTGTTAATACCAGA+TGG | - | chr5.4:2245813-2245832 | MS.gene001039:intron | 35.0% |
| ! | GTTCTTCAGATTGATTCAGA+CGG | - | chr5.4:2244277-2244296 | MS.gene001039:CDS | 35.0% |
| ! | TAAGCTGTAGTCACTTTATG+TGG | + | chr5.4:2240680-2240699 | None:intergenic | 35.0% |
| ! | TCTGAATCCCAATTCTTTTG+CGG | - | chr5.4:2243316-2243335 | MS.gene001039:CDS | 35.0% |
| ! | TTTTGATCGATGAATTGGTC+GGG | + | chr5.4:2242067-2242086 | None:intergenic | 35.0% |
| !! | ACTCAATTTTAGCATCAGAG+AGG | + | chr5.4:2243661-2243680 | None:intergenic | 35.0% |
| !! | AGAAGAGGTTCTGAACAAAT+AGG | - | chr5.4:2246596-2246615 | MS.gene001039:intron | 35.0% |
| !! | CTCAATTTTAGCATCAGAGA+GGG | + | chr5.4:2243660-2243679 | None:intergenic | 35.0% |
| !! | CTGATTTGGCAAAGAGAAAA+AGG | + | chr5.4:2245680-2245699 | None:intergenic | 35.0% |
| !! | CTTGCTTTGGAGCTTAAATA+TGG | - | chr5.4:2242996-2243015 | MS.gene001039:CDS | 35.0% |
| !!! | ATGCAGCACTTATTTTACTC+TGG | + | chr5.4:2240607-2240626 | None:intergenic | 35.0% |
| !!! | CAGCTTTTTTATCATGAAGC+AGG | + | chr5.4:2240537-2240556 | None:intergenic | 35.0% |
| !!! | TTGCTGCTTTTTTAATGACC+TGG | + | chr5.4:2243129-2243148 | None:intergenic | 35.0% |
| AAACTGAAGATGACAAGAGG+AGG | - | chr5.4:2246333-2246352 | MS.gene001039:intron | 40.0% | |
| AAAGCAAGAACTTACCAGAG+TGG | - | chr5.4:2242431-2242450 | MS.gene001039:CDS | 40.0% | |
| AACTTAACTTCTCTTCCACC+AGG | - | chr5.4:2243108-2243127 | MS.gene001039:CDS | 40.0% | |
| AAGCAGATTCATTTGCAAGG+AGG | - | chr5.4:2241821-2241840 | MS.gene001039:CDS | 40.0% | |
| AAGTTGAACAACACAGGGTT+AGG | - | chr5.4:2245238-2245257 | MS.gene001039:CDS | 40.0% | |
| AATGTACTATAAGAAGCGGC+CGG | - | chr5.4:2241849-2241868 | MS.gene001039:CDS | 40.0% | |
| ACACTCCAAGTTCTTGGTTA+AGG | + | chr5.4:2244915-2244934 | None:intergenic | 40.0% | |
| ACAGATGCCGCAAAAGAATT+GGG | + | chr5.4:2243326-2243345 | None:intergenic | 40.0% | |
| ACATATTGAGGAGCTGAAGA+TGG | - | chr5.4:2245068-2245087 | MS.gene001039:CDS | 40.0% | |
| AGAAATTCTGTGGTAGGCAA+TGG | - | chr5.4:2245594-2245613 | MS.gene001039:intron | 40.0% | |
| AGAAGGAAATTGCGTGTTTG+TGG | - | chr5.4:2246728-2246747 | MS.gene001039:CDS | 40.0% | |
| AGAGAGATACGATCATGCAA+TGG | - | chr5.4:2241921-2241940 | MS.gene001039:CDS | 40.0% | |
| AGAGATACGATCATGCAATG+GGG | - | chr5.4:2241923-2241942 | MS.gene001039:CDS | 40.0% | |
| AGCAGATTCATTTGCAAGGA+GGG | - | chr5.4:2241822-2241841 | MS.gene001039:CDS | 40.0% | |
| AGCTGGAAGTTGAAACATTG+AGG | - | chr5.4:2242580-2242599 | MS.gene001039:CDS | 40.0% | |
| AGGAAGCAGATTCATTTGCA+AGG | - | chr5.4:2241818-2241837 | MS.gene001039:CDS | 40.0% | |
| AGGCTGAAAATTTAGTGCAG+AGG | - | chr5.4:2242817-2242836 | MS.gene001039:CDS | 40.0% | |
| AGTCCAGACGCTTATATTCT+TGG | - | chr5.4:2240370-2240389 | MS.gene001039:CDS | 40.0% | |
| AGTTGAACAACACAGGGTTA+GGG | - | chr5.4:2245239-2245258 | MS.gene001039:CDS | 40.0% | |
| ATAACTTCTCCAAACTCTCC+TGG | + | chr5.4:2242191-2242210 | None:intergenic | 40.0% | |
| ATCTGAATGAGTCAACTGAG+AGG | - | chr5.4:2244974-2244993 | MS.gene001039:CDS | 40.0% | |
| ATGAGAGTGATTCAGCATCA+GGG | + | chr5.4:2242041-2242060 | None:intergenic | 40.0% | |
| ATGCTCTCGCTTCAAATACT+TGG | + | chr5.4:2246117-2246136 | None:intergenic | 40.0% | |
| ATTGCGTGTTTGTGGATGTT+CGG | - | chr5.4:2246736-2246755 | MS.gene001039:CDS | 40.0% | |
| CAGCCTCTAACTGAAGATTT+CGG | + | chr5.4:2242803-2242822 | None:intergenic | 40.0% | |
| CAGTTGACATTGCATCTTTG+AGG | + | chr5.4:2244747-2244766 | None:intergenic | 40.0% | |
| CATATTGCTGAAATTGGCTG+AGG | - | chr5.4:2246652-2246671 | MS.gene001039:intron | 40.0% | |
| CATCTGTCAGAGTTAGAGTA+TGG | + | chr5.4:2241587-2241606 | None:intergenic | 40.0% | |
| CTAAAAGCAGATAAGGATGC+CGG | - | chr5.4:2242321-2242340 | MS.gene001039:CDS | 40.0% | |
| CTCAGAATTGGACATAGAGA+AGG | - | chr5.4:2246265-2246284 | MS.gene001039:intron | 40.0% | |
| CTCTGGTAAGTTCTTGCTTT+AGG | + | chr5.4:2242431-2242450 | None:intergenic | 40.0% | |
| CTTCTCTATGTCCAATTCTG+AGG | + | chr5.4:2246267-2246286 | None:intergenic | 40.0% | |
| CTTGGAATCTCCCTATCTAA+AGG | + | chr5.4:2246578-2246597 | None:intergenic | 40.0% | |
| GAAGAACACCACACACTTTA+TGG | + | chr5.4:2244264-2244283 | None:intergenic | 40.0% | |
| GAATCTCACTTTAGGTGTTC+TGG | - | chr5.4:2241363-2241382 | MS.gene001039:intron | 40.0% | |
| GAATTTCAGCTTCACTTGCT+CGG | + | chr5.4:2242269-2242288 | None:intergenic | 40.0% | |
| GAGACTCGATGATGAAAGTT+CGG | - | chr5.4:2245413-2245432 | MS.gene001039:intron | 40.0% | |
| GAGAGATACGATCATGCAAT+GGG | - | chr5.4:2241922-2241941 | MS.gene001039:CDS | 40.0% | |
| GATCGAATAAATCCATGGCT+TGG | + | chr5.4:2241249-2241268 | None:intergenic | 40.0% | |
| GATGCAGCTAAAAGCAGATA+AGG | - | chr5.4:2242314-2242333 | MS.gene001039:CDS | 40.0% | |
| GCTGAGGAAAACAACAACAA+AGG | - | chr5.4:2246668-2246687 | MS.gene001039:intron | 40.0% | |
| GGACTGAATGATGAGTTAGA+TGG | - | chr5.4:2243476-2243495 | MS.gene001039:CDS | 40.0% | |
| GGAGCAAAGAAATCTTGCTT+TGG | - | chr5.4:2242983-2243002 | MS.gene001039:CDS | 40.0% | |
| GGAGTCAATGTTATCTCAGA+AGG | - | chr5.4:2242386-2242405 | MS.gene001039:CDS | 40.0% | |
| GTCCATATGAACGACTAAAG+TGG | + | chr5.4:2241069-2241088 | None:intergenic | 40.0% | |
| TAAGTCGGAGAAAAAGATCG+TGG | - | chr5.4:2244474-2244493 | MS.gene001039:CDS | 40.0% | |
| TACAGATGCCGCAAAAGAAT+TGG | + | chr5.4:2243327-2243346 | None:intergenic | 40.0% | |
| TAGTGATTGAGACCTGTCTT+CGG | - | chr5.4:2245760-2245779 | MS.gene001039:intron | 40.0% | |
| TCCACTAACTTCATGAGTTC+CGG | + | chr5.4:2241871-2241890 | None:intergenic | 40.0% | |
| TCTGTCAGAGTTAGAGTATG+GGG | + | chr5.4:2241585-2241604 | None:intergenic | 40.0% | |
| TGAAAGTTCGGCAAAAAGCT+TGG | - | chr5.4:2245425-2245444 | MS.gene001039:intron | 40.0% | |
| TGAGAAAGAGGCAGAAAAAC+TGG | - | chr5.4:2242737-2242756 | MS.gene001039:CDS | 40.0% | |
| TGCACCATAGATAATAGGTG+TGG | + | chr5.4:2241510-2241529 | None:intergenic | 40.0% | |
| TGGACTAAACTATAGAGGCA+TGG | + | chr5.4:2241729-2241748 | None:intergenic | 40.0% | |
| TTATTTCGAAGACCAAGCCA+TGG | - | chr5.4:2241234-2241253 | MS.gene001039:CDS | 40.0% | |
| TTCCAGAATCATCTGAACGA+TGG | + | chr5.4:2246229-2246248 | None:intergenic | 40.0% | |
| ! | ACACTAATCTATGAGGGCAT+TGG | + | chr5.4:2240964-2240983 | None:intergenic | 40.0% |
| ! | ACGCTTATATTCTTGGTGGT+GGG | - | chr5.4:2240377-2240396 | MS.gene001039:CDS | 40.0% |
| ! | AGAGCACTTTGTGAACATCT+TGG | - | chr5.4:2244865-2244884 | MS.gene001039:CDS | 40.0% |
| ! | AGCAAATCTGAAACTCCATC+TGG | + | chr5.4:2245831-2245850 | None:intergenic | 40.0% |
| ! | ATATTTTCTCCAGGCAGTGA+TGG | + | chr5.4:2242656-2242675 | None:intergenic | 40.0% |
| ! | ATTTGAAGCGAGAGCATAGA+AGG | - | chr5.4:2246120-2246139 | MS.gene001039:intron | 40.0% |
| ! | ATTTGCTGACATTGCAGACA+AGG | - | chr5.4:2245844-2245863 | MS.gene001039:intron | 40.0% |
| ! | CATTCTTTGGAGGTCAACTA+TGG | - | chr5.4:2241134-2241153 | MS.gene001039:CDS | 40.0% |
| ! | GTTCAAACTTTGGGAGAATG+AGG | - | chr5.4:2245302-2245321 | MS.gene001039:CDS | 40.0% |
| ! | TGAATATGGAGTCGATTCTG+TGG | + | chr5.4:2245934-2245953 | None:intergenic | 40.0% |
| ! | TGGCTTCTGGAAAATCTTAC+AGG | - | chr5.4:2240429-2240448 | MS.gene001039:CDS | 40.0% |
| ! | TTCAGATTGATTCAGACGGA+GGG | - | chr5.4:2244281-2244300 | MS.gene001039:CDS | 40.0% |
| ! | TTGAACTTCTAGAGGAGAAC+AGG | - | chr5.4:2244551-2244570 | MS.gene001039:CDS | 40.0% |
| !! | ACAACAAGCTTTAGGATCCT+AGG | + | chr5.4:2241476-2241495 | None:intergenic | 40.0% |
| !! | AGCTCTAAGCAACCTCAATT+TGG | - | chr5.4:2244804-2244823 | MS.gene001039:CDS | 40.0% |
| !! | CAACAAGCTTTAGGATCCTA+GGG | + | chr5.4:2241475-2241494 | None:intergenic | 40.0% |
| !! | CTGGCATTGTTTTATGTGCA+TGG | + | chr5.4:2241957-2241976 | None:intergenic | 40.0% |
| !! | GATGAGTTAGATGGATTGAG+AGG | - | chr5.4:2243485-2243504 | MS.gene001039:CDS | 40.0% |
| !!! | CTGCTTTTTTAATGACCTGG+TGG | + | chr5.4:2243126-2243145 | None:intergenic | 40.0% |
| AACGATGGCAGATCATAGCA+TGG | + | chr5.4:2246214-2246233 | None:intergenic | 45.0% | |
| ACGAAGCTTCGCCTTTAGAT+AGG | - | chr5.4:2246564-2246583 | MS.gene001039:intron | 45.0% | |
| ACGTACTACAGGAAGAACAG+CGG | - | chr5.4:2243990-2244009 | MS.gene001039:CDS | 45.0% | |
| ACTGCAAACTCTGATGCATG+GGG | - | chr5.4:2242890-2242909 | MS.gene001039:CDS | 45.0% | |
| ACTTCAGCAGCATCAATCTG+AGG | - | chr5.4:2244441-2244460 | MS.gene001039:CDS | 45.0% | |
| AGACTGCAAACTCTGATGCA+TGG | - | chr5.4:2242888-2242907 | MS.gene001039:CDS | 45.0% | |
| AGATGACAAGAGGAGGATCT+TGG | - | chr5.4:2246340-2246359 | MS.gene001039:intron | 45.0% | |
| AGCAAGGTTACTGAGCTTAC+TGG | - | chr5.4:2245381-2245400 | MS.gene001039:intron | 45.0% | |
| AGCTGCTGGAAATGGAGAAA+AGG | - | chr5.4:2245007-2245026 | MS.gene001039:CDS | 45.0% | |
| AGGTCTCAATCACTACATCC+TGG | + | chr5.4:2245755-2245774 | None:intergenic | 45.0% | |
| ATAAGGATGCCGGTGAAGTT+CGG | - | chr5.4:2242331-2242350 | MS.gene001039:CDS | 45.0% | |
| ATATGGGCTTCGTCTGTTGA+AGG | - | chr5.4:2243013-2243032 | MS.gene001039:CDS | 45.0% | |
| ATCATAGCATGGTCCACTGT+TGG | + | chr5.4:2246203-2246222 | None:intergenic | 45.0% | |
| ATCCTTCTGAACTACCACTC+TGG | + | chr5.4:2242448-2242467 | None:intergenic | 45.0% | |
| ATGGCTATGTTTCCGAAGAC+AGG | + | chr5.4:2245775-2245794 | None:intergenic | 45.0% | |
| CATTCCACTTGATCGCAATG+TGG | - | chr5.4:2246079-2246098 | MS.gene001039:intron | 45.0% | |
| CCACCAAGAATATAAGCGTC+TGG | + | chr5.4:2240376-2240395 | None:intergenic | 45.0% | |
| CCAGACGCTTATATTCTTGG+TGG | - | chr5.4:2240373-2240392 | MS.gene001039:CDS | 45.0% | |
| CGAAGCTTCGCCTTTAGATA+GGG | - | chr5.4:2246565-2246584 | MS.gene001039:intron | 45.0% | |
| CTGATTGTACCGAACTTCAC+CGG | + | chr5.4:2242343-2242362 | None:intergenic | 45.0% | |
| CTTCAGCAGCATCAATCTGA+GGG | - | chr5.4:2244442-2244461 | MS.gene001039:CDS | 45.0% | |
| CTTCAGCTCCTCAATATGTC+TGG | + | chr5.4:2245067-2245086 | None:intergenic | 45.0% | |
| GAACAGTGCAATGTTCCATG+AGG | - | chr5.4:2244777-2244796 | MS.gene001039:CDS | 45.0% | |
| GAATCTAGTCCACGTACTAC+AGG | - | chr5.4:2243979-2243998 | MS.gene001039:CDS | 45.0% | |
| GAATGAGTCAACTGAGAGGA+TGG | - | chr5.4:2244978-2244997 | MS.gene001039:CDS | 45.0% | |
| GACGCTTATATTCTTGGTGG+TGG | - | chr5.4:2240376-2240395 | MS.gene001039:CDS | 45.0% | |
| GACTGCAAACTCTGATGCAT+GGG | - | chr5.4:2242889-2242908 | MS.gene001039:CDS | 45.0% | |
| GAGATACGATCATGCAATGG+GGG | - | chr5.4:2241924-2241943 | MS.gene001039:CDS | 45.0% | |
| GATAGGGAGATTCCAAGAAG+AGG | - | chr5.4:2246581-2246600 | MS.gene001039:intron | 45.0% | |
| GATGAGAGTGATTCAGCATC+AGG | + | chr5.4:2242042-2242061 | None:intergenic | 45.0% | |
| GATTCACCATGCGGTTCTTT+AGG | - | chr5.4:2242015-2242034 | MS.gene001039:CDS | 45.0% | |
| GGAAATGGAGAAAAGGCTGA+AGG | - | chr5.4:2245014-2245033 | MS.gene001039:CDS | 45.0% | |
| GGAACTCATGAAGTTAGTGG+AGG | - | chr5.4:2241870-2241889 | MS.gene001039:CDS | 45.0% | |
| GGAAGAGATGCAAGAGATTG+TGG | - | chr5.4:2243064-2243083 | MS.gene001039:CDS | 45.0% | |
| GGATGTATGGACCTCCATTA+TGG | + | chr5.4:2240759-2240778 | None:intergenic | 45.0% | |
| GGCCAAAATCCAGTCTGATA+AGG | - | chr5.4:2242146-2242165 | MS.gene001039:CDS | 45.0% | |
| GTAGAGAACTCTGTCCTCAT+AGG | - | chr5.4:2244415-2244434 | MS.gene001039:CDS | 45.0% | |
| TAAGGTAGCTTCGGCTAGAA+TGG | - | chr5.4:2240722-2240741 | MS.gene001039:CDS | 45.0% | |
| TACCAGAGTGGTAGTTCAGA+AGG | - | chr5.4:2242443-2242462 | MS.gene001039:CDS | 45.0% | |
| TCATCCACATTGCGATCAAG+TGG | + | chr5.4:2246086-2246105 | None:intergenic | 45.0% | |
| TCCTGAACACTCCAAGTTCT+TGG | + | chr5.4:2244921-2244940 | None:intergenic | 45.0% | |
| TCTGGACTCAGATTCTGACA+AGG | + | chr5.4:2240358-2240377 | None:intergenic | 45.0% | |
| TCTTCAGTACCAGGAGAGTT+TGG | - | chr5.4:2242179-2242198 | MS.gene001039:CDS | 45.0% | |
| TGCCATCGTTCAGATGATTC+TGG | - | chr5.4:2246224-2246243 | MS.gene001039:intron | 45.0% | |
| TGCTCTCTTTCTTCAGTACC+AGG | - | chr5.4:2242170-2242189 | MS.gene001039:CDS | 45.0% | |
| TGCTTAGAGCTAGTACCTCA+TGG | + | chr5.4:2244795-2244814 | None:intergenic | 45.0% | |
| TGGATTGAGAGGAACAGTGA+AGG | - | chr5.4:2243496-2243515 | MS.gene001039:CDS | 45.0% | |
| TTGCGTGTTTGTGGATGTTC+GGG | - | chr5.4:2246737-2246756 | MS.gene001039:CDS | 45.0% | |
| ! | ACCAAGAACTTGGAGTGTTC+AGG | - | chr5.4:2244917-2244936 | MS.gene001039:CDS | 45.0% |
| ! | CAAAAAGGAGCACAGTGAGA+AGG | - | chr5.4:2243388-2243407 | MS.gene001039:CDS | 45.0% |
| ! | CTTCAGATTGATTCAGACGG+AGG | - | chr5.4:2244280-2244299 | MS.gene001039:CDS | 45.0% |
| !! | AGAGAGCATCCTTATCAGAC+TGG | + | chr5.4:2242158-2242177 | None:intergenic | 45.0% |
| !! | ATCAGACTGGATTTTGGCCA+GGG | + | chr5.4:2242145-2242164 | None:intergenic | 45.0% |
| !! | TATCAGACTGGATTTTGGCC+AGG | + | chr5.4:2242146-2242165 | None:intergenic | 45.0% |
| !! | AAATTTACTAAATTATATTA+GGG | + | chr5.4:2241622-2241641 | None:intergenic | 5.0% |
| ACAAGAGGAGGATCTTGGAG+AGG | - | chr5.4:2246345-2246364 | MS.gene001039:intron | 50.0% | |
| ACCATTATCTGCGCCAACAG+TGG | - | chr5.4:2246187-2246206 | MS.gene001039:intron | 50.0% | |
| ACCTTGCTGAGGAGAATTCC+AGG | - | chr5.4:2242529-2242548 | MS.gene001039:CDS | 50.0% | |
| ACTACAGGAAGAACAGCGGT+TGG | - | chr5.4:2243994-2244013 | MS.gene001039:CDS | 50.0% | |
| AGCTAACTTCTGACCATCCG+AGG | + | chr5.4:2246375-2246394 | None:intergenic | 50.0% | |
| CGTATCTCTCTGCTAACGCA+CGG | + | chr5.4:2241912-2241931 | None:intergenic | 50.0% | |
| CTACAGGAAGAACAGCGGTT+GGG | - | chr5.4:2243995-2244014 | MS.gene001039:CDS | 50.0% | |
| CTTCACTTGCTCGGTCATCA+AGG | + | chr5.4:2242260-2242279 | None:intergenic | 50.0% | |
| GATCTTGGAGAGGCTTTCCT+CGG | - | chr5.4:2246355-2246374 | MS.gene001039:intron | 50.0% | |
| GCCGGAACTCATGAAGTTAG+TGG | - | chr5.4:2241867-2241886 | MS.gene001039:CDS | 50.0% | |
| GCTGCTGAAGTGAACCTATG+AGG | + | chr5.4:2244432-2244451 | None:intergenic | 50.0% | |
| GCTGTTCTTCCTGTAGTACG+TGG | + | chr5.4:2243991-2244010 | None:intergenic | 50.0% | |
| GCTTCGTCTGTTGAAGGACT+TGG | - | chr5.4:2243019-2243038 | MS.gene001039:CDS | 50.0% | |
| GGACAAAGAGCTGCTGGAAA+TGG | - | chr5.4:2244999-2245018 | MS.gene001039:CDS | 50.0% | |
| TACAGGAAGAACAGCGGTTG+GGG | - | chr5.4:2243996-2244015 | MS.gene001039:CDS | 50.0% | |
| TAGAGCACATTTCCCGCCTT+TGG | - | chr5.4:2245565-2245584 | MS.gene001039:intron | 50.0% | |
| TAGAGGAGAACAGGCAACTG+AGG | - | chr5.4:2244560-2244579 | MS.gene001039:CDS | 50.0% | |
| TCAAACCTTAAGGGAAGCCC+TGG | - | chr5.4:2242125-2242144 | MS.gene001039:CDS | 50.0% | |
| TCCACTGTTGGCGCAGATAA+TGG | + | chr5.4:2246191-2246210 | None:intergenic | 50.0% | |
| TCCTGGAATTCTCCTCAGCA+AGG | + | chr5.4:2242533-2242552 | None:intergenic | 50.0% | |
| TCTCCAGGCAGTGATGGTAA+AGG | + | chr5.4:2242650-2242669 | None:intergenic | 50.0% | |
| TGAAGCGCGACTGGCAAATT+TGG | - | chr5.4:2243955-2243974 | MS.gene001039:CDS | 50.0% | |
| TGCGTGTTTGTGGATGTTCG+GGG | - | chr5.4:2246738-2246757 | MS.gene001039:CDS | 50.0% | |
| TGGAGGTCAACTATGGTGAG+TGG | - | chr5.4:2241141-2241160 | MS.gene001039:CDS | 50.0% | |
| TGTCCTTTACCATCACTGCC+TGG | - | chr5.4:2242644-2242663 | MS.gene001039:CDS | 50.0% | |
| TTCGGGGCCATCAACTAATG+AGG | - | chr5.4:2246754-2246773 | MS.gene001039:CDS | 50.0% | |
| ! | ACTTTGGGAGAATGAGGCTG+CGG | - | chr5.4:2245308-2245327 | MS.gene001039:CDS | 50.0% |
| ! | AGAGAGGGACTTTTCCAGCA+AGG | + | chr5.4:2243645-2243664 | None:intergenic | 50.0% |
| ! | GCTGAGTTGGGAAATGCTTC+TGG | + | chr5.4:2241976-2241995 | None:intergenic | 50.0% |
| ACACTCAAGTGAAGCGCGAC+TGG | - | chr5.4:2243946-2243965 | MS.gene001039:CDS | 55.0% | |
| CTGCTAACGCACGGTATGCT+CGG | + | chr5.4:2241903-2241922 | None:intergenic | 55.0% | |
| GAGGATGGACAAAGAGCTGC+TGG | - | chr5.4:2244993-2245012 | MS.gene001039:CDS | 55.0% | |
| GGTAGGCAATGGAGCGCAAA+AGG | - | chr5.4:2245605-2245624 | MS.gene001039:intron | 55.0% | |
| GTCTACTTTGGCAGCTCTGC+AGG | - | chr5.4:2244624-2244643 | MS.gene001039:CDS | 55.0% | |
| TCAGGGCCTAAAGAACCGCA+TGG | + | chr5.4:2242024-2242043 | None:intergenic | 55.0% | |
| TTGGAGAGGCTTTCCTCGGA+TGG | - | chr5.4:2246359-2246378 | MS.gene001039:intron | 55.0% | |
| TTTGGCCAGGGCTTCCCTTA+AGG | + | chr5.4:2242133-2242152 | None:intergenic | 55.0% | |
| ! | CAGGGTTAGGGAAGAAGCAC+TGG | - | chr5.4:2245251-2245270 | MS.gene001039:CDS | 55.0% |
| GGAAGAACAGCGGTTGGGGA+AGG | - | chr5.4:2244000-2244019 | MS.gene001039:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 2240348 | 2246781 | 2240348 | ID=MS.gene001039 |
| chr5.4 | mRNA | 2240348 | 2246781 | 2240348 | ID=MS.gene001039.t1;Parent=MS.gene001039 |
| chr5.4 | exon | 2246679 | 2246781 | 2246679 | ID=MS.gene001039.t1.exon1;Parent=MS.gene001039.t1 |
| chr5.4 | CDS | 2246679 | 2246781 | 2246679 | ID=cds.MS.gene001039.t1;Parent=MS.gene001039.t1 |
| chr5.4 | exon | 2241503 | 2245353 | 2241503 | ID=MS.gene001039.t1.exon2;Parent=MS.gene001039.t1 |
| chr5.4 | CDS | 2241503 | 2245353 | 2241503 | ID=cds.MS.gene001039.t1;Parent=MS.gene001039.t1 |
| chr5.4 | exon | 2240348 | 2241373 | 2240348 | ID=MS.gene001039.t1.exon3;Parent=MS.gene001039.t1 |
| chr5.4 | CDS | 2240348 | 2241373 | 2240348 | ID=cds.MS.gene001039.t1;Parent=MS.gene001039.t1 |
| Gene Sequence |
| Protein sequence |
