AlfalfaGEDB | MS.gene001042

M. sativa cultivar XinJiangDaYe / MS.gene001042

KEGG: -
GO: GO:0000166 GO:0003674 GO:0003824 GO:0004672 GO:0005488 GO:0005524 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019538 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0036211 GO:0043167 GO:0043168 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0071704 GO:0097159 GO:0097367 GO:0140096 GO:1901265 GO:1901363 GO:1901564
PFAM: PF07714.20

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene001042.t1	KEH27357.1	99.5	390	2	0	1	390	35	424	2.60E-226	794.3

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene001042.t1	Q9ZQ31	35.7	328	185	4	39	366	88	389	1.1e-58	228.8

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene001042.t1	G7K3Q2	99.5	390	2	0	1	390	1	390	1.9e-226	794.3

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
MS.gene007481	MS.gene001042	PPI
MS.gene029886	MS.gene001042	PPI
MS.gene073801	MS.gene001042	PPI
MS.gene09791	MS.gene001042	PPI
MS.gene20235	MS.gene001042	PPI
MS.gene22478	MS.gene001042	PPI
MS.gene30889	MS.gene001042	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene001042.t1	MTR_5g006560	99.487	390	2	0	1	390	1	390	0.0	811
MS.gene001042.t1	MTR_5g006560	99.487	390	2	0	1	390	35	424	0.0	810
MS.gene001042.t1	MTR_1g103270	76.579	380	81	3	11	390	11	382	0.0	609
MS.gene001042.t1	MTR_4g106980	63.291	395	104	3	33	390	2	392	0.0	532
MS.gene001042.t1	MTR_6g007603	66.938	369	99	2	41	390	11	375	0.0	530
MS.gene001042.t1	MTR_3g078110	65.753	365	110	2	37	390	3	363	0.0	525
MS.gene001042.t1	MTR_4g106980	59.939	327	90	3	33	322	2	324	1.06e-143	411
MS.gene001042.t1	MTR_8g100085	37.931	290	156	4	74	363	124	389	7.35e-73	233
MS.gene001042.t1	MTR_3g034100	37.931	290	156	4	74	363	73	338	3.80e-72	230
MS.gene001042.t1	MTR_2g013900	35.583	326	178	7	74	390	152	454	2.04e-64	213

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene001042.t1	AT3G22750	79.255	376	74	2	16	390	6	378	0.0	630
MS.gene001042.t1	AT4G14780	75.000	368	88	1	23	390	1	364	0.0	590
MS.gene001042.t1	AT3G01490	62.843	401	94	4	41	390	15	411	0.0	528
MS.gene001042.t1	AT5G50000	63.660	388	107	2	33	390	2	385	0.0	524
MS.gene001042.t1	AT3G63260	63.780	381	132	4	15	390	12	391	0.0	510
MS.gene001042.t1	AT5G50000	61.875	320	88	2	33	322	2	317	3.21e-144	412
MS.gene001042.t1	AT3G01490	58.702	339	85	4	41	328	15	349	4.37e-142	408
MS.gene001042.t1	AT3G63260	62.620	313	111	4	15	322	12	323	5.04e-141	405
MS.gene001042.t1	AT4G31170	37.543	293	159	3	74	366	122	390	4.31e-72	231
MS.gene001042.t1	AT4G31170	37.543	293	159	3	74	366	122	390	4.31e-72	231

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Find 99 sgRNAs with CRISPR-Local

Find 205 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGCACTTAAGCAGGGTT+TGG	0.421914	5.4:+2297187	MS.gene001042:CDS
AAATCATATCTTTACTGCTT+TGG	0.324725	5.4:-2297119	None:intergenic
AACATACCTTAAATCCAATT+TGG	0.244789	5.4:-2297265	None:intergenic
AACTGGAACCCTTGGATACA+TGG	0.452267	5.4:+2299380	MS.gene001042:CDS
AAGGCCTAGAGAAGAATGGG+AGG	0.722391	5.4:+2297233	MS.gene001042:CDS
AAGGTGTTGTCCGAGTGCAT+TGG	0.570264	5.4:+2300064	MS.gene001042:CDS
AATACTTGATAAGAAATAGG+CGG	0.666955	5.4:+2299069	MS.gene001042:CDS
AATCAGCTATCTTTAGATTC+CGG	0.398947	5.4:-2299308	None:intergenic
AATCTAAAGATAGCTGATTT+TGG	0.244411	5.4:+2299312	MS.gene001042:CDS
AATGCACTCGGACAACACCT+TGG	0.561533	5.4:-2300062	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AATCAGCTATCTTTAGATTC+CGG	-	chr5.4:2299311-2299330	None:intergenic	30.0%
ATAACAGATCCAATCTATTG+CGG	-	chr5.4:2297717-2297736	None:intergenic	30.0%
ATAGCTAAGACTGCATATAA+GGG	-	chr5.4:2299226-2299245	None:intergenic	30.0%
ATTGACGTAGTCAAAAATCT+CGG	+	chr5.4:2297514-2297533	MS.gene001042:intron	30.0%
GTAAATGCAGATGTGTAATT+CGG	-	chr5.4:2297902-2297921	None:intergenic	30.0%
GTGATGAATTCAAAGATGAA+GGG	+	chr5.4:2297087-2297106	MS.gene001042:CDS	30.0%
TATCTTACGAATTAATCGCA+TGG	+	chr5.4:2299719-2299738	MS.gene001042:intron	30.0%
TGATACAATGAAGGCTAATT+CGG	+	chr5.4:2299197-2299216	MS.gene001042:intron	30.0%
TGTGATGAATTCAAAGATGA+AGG	+	chr5.4:2297086-2297105	MS.gene001042:CDS	30.0%
TTAATGTTACACGTGACATA+TGG	+	chr5.4:2299993-2300012	MS.gene001042:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5.4	gene	2297024	2300250	2297024	ID=MS.gene001042
chr5.4	mRNA	2297024	2300250	2297024	ID=MS.gene001042.t1;Parent=MS.gene001042
chr5.4	exon	2297024	2297348	2297024	ID=MS.gene001042.t1.exon1;Parent=MS.gene001042.t1
chr5.4	CDS	2297024	2297348	2297024	ID=cds.MS.gene001042.t1;Parent=MS.gene001042.t1
chr5.4	exon	2298688	2298809	2298688	ID=MS.gene001042.t1.exon2;Parent=MS.gene001042.t1
chr5.4	CDS	2298688	2298809	2298688	ID=cds.MS.gene001042.t1;Parent=MS.gene001042.t1
chr5.4	exon	2298936	2299144	2298936	ID=MS.gene001042.t1.exon3;Parent=MS.gene001042.t1
chr5.4	CDS	2298936	2299144	2298936	ID=cds.MS.gene001042.t1;Parent=MS.gene001042.t1
chr5.4	exon	2299236	2299410	2299236	ID=MS.gene001042.t1.exon4;Parent=MS.gene001042.t1
chr5.4	CDS	2299236	2299410	2299236	ID=cds.MS.gene001042.t1;Parent=MS.gene001042.t1
chr5.4	exon	2299793	2299927	2299793	ID=MS.gene001042.t1.exon5;Parent=MS.gene001042.t1
chr5.4	CDS	2299793	2299927	2299793	ID=cds.MS.gene001042.t1;Parent=MS.gene001042.t1
chr5.4	exon	2300044	2300250	2300044	ID=MS.gene001042.t1.exon6;Parent=MS.gene001042.t1
chr5.4	CDS	2300044	2300250	2300044	ID=cds.MS.gene001042.t1;Parent=MS.gene001042.t1

Gene Sequence

>MS.gene001042

ATGGATTTTGAAGGTGAAGGTGTTAGGACACCAAAGGTGGAATTGGAAGAAGGAGCAAAAAGTGTGATGAATTCAAAGATGAAGGGTGCTGGAAACCAAAGCAGTAAAGATATGATTTTCAGAGCTGATAGAATTGATCTCAAGAATTTGGATGCTCAATTGGAAAAGCACTTAAGCAGGGTTTGGTCAAGAAACACCAATGAGACAAAAAGGCCTAGAGAAGAATGGGAGGTTGAGTTGGCCAAATTGGATTTAAGGTATGTTGTTGCTCATGGTGCTTATGGTACTGTCTATAGAGGCACATATGATACTCAAGATGTTGCAGGTATTTCTTTGTACTATTTATATGAATTATATTTTTTTTTCATTTTAAATTAAATATGTCATTCAATGTTTTCAAATACTGAAATGTTATATGTTCTTGATTTAAGAATTGATTGGTTTACTCAGCTTGTGAGTCTGGCAGGAAATAGATTTCACGCGGTCATGAATTGACGTAGTCAAAAATCTCGGCCATTGATTGAAAATCGTGCGGCTTGTATTTCAAGTTATGTTTTAAAAGCACATTTATTAGGGTTTAAATATGAGCTGTCCGGTTTTCATGCAATGGCTGTTATTGACTGGCTGCCTGAATGCAAGATTCCCCCCGACCACAGGGAATCAATGTTCGAGTTTGGAGCTTAATTTTCGCCGCAATAGATTGGATCTGTTATAATAAGATTATTAATTGAATGTTTGCATGAGTTTGTGATGTTGCAACTTAGAGAACATAACCCCCAAAATAGTGTTTGAAGTAACTAAAGATTTGTCGCGCGGCTGTCTTATGATTTGAGTTTGAACCGTTCTGACAATTTTTTATTGTCGTTATCTATTGGCCGAATTACACATCTGCATTTACATCAAACCACATTTTTTTAACAAAGTTGATTTTAAAGGTTGCAAAAGGTTTTGATAAACACATAATTGTTTGGATAGAAACCGTGATGAGAAAAACCGATTTTGGATGGATAGAGCATGTGTTTGGGAAGCTTCTTTTTCATGATGCTGCAATGTTGGTGAAACCATCATATCGCGGTTCCAAACACAGGGAGAATCGACTTTGATAGAATCGAGAAATTTTTGCTTTAGCGTCAATACTATTTAAACAAAATTGATTCTTCCAAACTCACTTTTAAAATATCTTTACACAACACATTTAAATTTCTTTAACCTCGATTAGGTTAAAATCAATTCTTTTAACATCATTTCATTCCAAATCATTACTATTAAAGTCTAAAACAAACGAACCCTAGAGCTGCTTGCAAATATCCTACCAGCTAATGAAACTCGAGCTTATATTCACTTTATGTCAAACTGTACTTTTAGGAATAATCAAAACTAATTTGTGAGGAAAAGAAAAACTAGCTATTAAAGTCTAAAACAAACGAACCCTAGAGCTGCTTGCAAATATCCTACCAGCTAATGAAACTCGAGCTTATATTCACTTTATGTCAAACTGTACTTTTAGGAATAATCAAAACTAATTTGTGAGGAAAAGAAAAACTAGTAATGTGAGGAATATAGCAGTATGCTGCCAACTCTATTATCCTTTTGGGTCGGTAAGAGCATTGCAGAATAAGGAGATATTTTCTCTGACATTTGTATTGTCATCTTGAATTTTACAGTGAAAGTGTTGGATTGGGGTGAGGATGGTGCTGCCACCGCTGCAGAAACTGCCGCTTTACGTGCATCTTTTAGGCAGGAGGTTGCCGTCTGGCACAAACTCGACCATCCAAATGTCACTAAAGTAATTACTCACTCTTTCAAATCTCGTTTATTGAAATTAATGACTGCTACTGGATACTATTTTGTATTGGTGAATCATGAATAACTTTGTATATTAGTGATTGTTTTGTATTTAATTTTGCAACAGTTTGTTGGAGCTTCAATGGGAACTTCAAATCTCAAGATTCCTACAAAAAACTCTTCAACCAACAATCAAGAGAGCCTTCCTTCTAGGGCATGTTGCGTCATTGTCGAGTTTCTTCCTGGTGGAACACTGAAGCAATACTTGATAAGAAATAGGCGGAAGAAACTTGCGTATAGGATTGTGGTTCAGCTCGCTTTGGACCTCTCCAGAGGGTAAGTTTCCGTTTTTACTATCCCTACAGTCTAGAAACTGCAAATCTTATACTGATACAATGAAGGCTAATTCGGCCTCCCTTATATGCAGTCTTAGCTATCTACATTCGGAGAAGATTGTTCACCGTGATGTTAAGACGGAGAATATGTTGCTAGATGGTAACCGGAATCTAAAGATAGCTGATTTTGGAGTTGCTCGGGTTGAAGCTTTGAATCCATGTGACATGACTGGTGAAACTGGAACCCTTGGATACATGGCTCCTGAGGTATTAATGCTGCTTTGATAAATATTATATGATACGCGACTTTCTGTTTTCATGAGATTGCCTGTGTTTGGACAAGCGCTTATAGCATATAAGCTTATCAGATAAGTGCTTATGTATGTATATGTTATTTCCATAACAAAAGATAAAATAAAGTCAAACTGTTTTCATATAAGCTATCATGAAGAGACTATGGAAAACAGCTTGTGGACATGTCATAAGTTATTTGCATAATCTCTCCTAAGCAGTCTCACAATTGCTTATTGTAATTTTTTTGTGATTTCAATTTTTAAGTATACATATGCAAGTTGTATCTTACGAATTAATCGCATGGTTTGTTAGACAGGCACTTGAAATATTAATCCATGCATTACGCAATGTGTAGGTTTTGGATGGTAAACCTTACAACAGGACATGTGATGTATACAGCTTTGGCATTTGCTTGTGGGAAATTTATTGCTGTGATATGCCTTATCCAGATCTAAGCTTTGCTGATGTGTCTTCCGCTGTCGTTCGTCAGGTATGATTACGTTTTCGGTGTCATTTGTGGAACATTCGAGTTCAGCCGTAACATATTTGTCTATTTTAATGTTACACGTGACATATGGATTTCATATTGATTGTGTTCTTGTGCAGAATTTACGACCAGAAATTCCAAGGTGTTGTCCGAGTGCATTGGCGAACATCATGCGGAAATGCTGGGATGCGAATCCGATCAAACGTCCGGAAATGAAGGATGTGGTGATAATGCTAGAAGCACTGGATACAAGCAAAGGTGGTGGAATGATTCCTGAAGATCAAAGTTCAGGTTGCTTTTGTTTTGCACCTCAAAGAGGTCCTTAA

Protein sequence

>MS.gene001042.t1

MDFEGEGVRTPKVELEEGAKSVMNSKMKGAGNQSSKDMIFRADRIDLKNLDAQLEKHLSRVWSRNTNETKRPREEWEVELAKLDLRYVVAHGAYGTVYRGTYDTQDVAVKVLDWGEDGAATAAETAALRASFRQEVAVWHKLDHPNVTKFVGASMGTSNLKIPTKNSSTNNQESLPSRACCVIVEFLPGGTLKQYLIRNRRKKLAYRIVVQLALDLSRGLSYLHSEKIVHRDVKTENMLLDGNRNLKIADFGVARVEALNPCDMTGETGTLGYMAPEVLDGKPYNRTCDVYSFGICLWEIYCCDMPYPDLSFADVSSAVVRQNLRPEIPRCCPSALANIMRKCWDANPIKRPEMKDVVIMLEALDTSKGGGMIPEDQSSGCFCFAPQRGP