AlfalfaGEDB | MS.gene20235

M. sativa cultivar XinJiangDaYe / MS.gene20235

KEGG: -
GO: GO:0000166 GO:0003674 GO:0003824 GO:0004672 GO:0005488 GO:0005524 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019538 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0036211 GO:0043167 GO:0043168 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0071704 GO:0097159 GO:0097367 GO:0140096 GO:1901265 GO:1901363 GO:1901564
PFAM: PF07714.20

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene20235.t1	XP_003625560.1	99.2	377	3	0	1	377	1	377	7.60E-215	756.1

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene20235.t1	Q0WRY5	76.4	377	87	1	1	375	1	377	2.2e-162	573.2

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene20235.t1	G7L1N7	99.2	377	3	0	1	377	1	377	5.5e-215	756.1

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049171	MS.gene20235	-0.805481	1.31E-49	-1.69E-46
MS.gene049633	MS.gene20235	-0.816345	5.80E-52	-1.69E-46
MS.gene050444	MS.gene20235	-0.814546	1.46E-51	-1.69E-46
MS.gene051138	MS.gene20235	0.810993	8.74E-51	-1.69E-46
MS.gene051317	MS.gene20235	-0.828676	7.88E-55	-1.69E-46
MS.gene051552	MS.gene20235	0.80053	1.38E-48	-1.69E-46
MS.gene051651	MS.gene20235	0.827634	1.40E-54	-1.69E-46
MS.gene051749	MS.gene20235	0.812141	4.92E-51	-1.69E-46
MS.gene051838	MS.gene20235	-0.81337	2.65E-51	-1.69E-46
MS.gene052870	MS.gene20235	-0.824066	9.87E-54	-1.69E-46

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PPI:

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Gene1	Gene2	Type
MS.gene023291	MS.gene20235	PPI
MS.gene024849	MS.gene20235	PPI
MS.gene09150	MS.gene20235	PPI
MS.gene20235	MS.gene026554	PPI
MS.gene20235	MS.gene98951	PPI
MS.gene20235	MS.gene21823	PPI
MS.gene20235	MS.gene027576	PPI
MS.gene20235	MS.gene001042	PPI
MS.gene20235	MS.gene009168	PPI
MS.gene20235	MS.gene68337	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene20235.t1	MTR_7g100500	99.204	377	3	0	1	377	1	377	0.0	785
MS.gene20235.t1	MTR_1g067140	87.435	382	39	3	1	376	1	379	0.0	655
MS.gene20235.t1	MTR_2g019990	83.282	323	53	1	49	370	65	387	0.0	568
MS.gene20235.t1	MTR_1g117060	80.128	312	62	0	49	360	73	384	0.0	533
MS.gene20235.t1	MTR_2g095880	80.000	300	60	0	58	357	76	375	0.0	526
MS.gene20235.t1	MTR_2g095920	68.208	346	93	2	36	364	152	497	2.67e-177	502
MS.gene20235.t1	MTR_4g131900	69.538	325	92	3	43	364	74	394	2.61e-169	478
MS.gene20235.t1	MTR_2g095950	68.098	326	93	1	32	357	29	343	6.28e-168	474
MS.gene20235.t1	MTR_7g058810	65.642	358	115	4	22	375	40	393	1.07e-167	476
MS.gene20235.t1	MTR_3g050780	70.861	302	88	0	55	356	60	361	1.36e-167	475

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene20235.t1	AT5G02800	75.321	389	70	3	1	375	1	377	0.0	590
MS.gene20235.t1	AT5G18610	73.196	388	92	6	2	377	3	390	0.0	567
MS.gene20235.t1	AT5G18610	73.196	388	92	6	2	377	3	390	0.0	567
MS.gene20235.t1	AT5G18610	73.196	388	92	6	2	377	3	390	0.0	567
MS.gene20235.t1	AT5G13160	72.159	352	93	2	18	364	26	377	0.0	525
MS.gene20235.t1	AT1G07870	76.159	302	72	0	58	359	88	389	5.02e-179	504
MS.gene20235.t1	AT1G07870	76.159	302	72	0	58	359	88	389	1.12e-177	505
MS.gene20235.t1	AT2G28590	71.656	314	89	0	43	356	68	381	1.55e-170	483
MS.gene20235.t1	AT3G20530	71.803	305	85	1	55	358	64	368	1.52e-166	471
MS.gene20235.t1	AT3G24790	71.523	302	86	0	50	351	24	325	1.59e-163	462

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Find 91 sgRNAs with CRISPR-Local

Find 189 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACCAAAATCAGATAACTT+TGG	0.433869	7.3:-12414350	None:intergenic
AAACGGACTCCAAGGGAACA+GGG	0.642350	7.3:+12413926	MS.gene20235:CDS
AAATCAGATGTTTATAGCTT+TGG	0.333341	7.3:+12414479	MS.gene20235:CDS
AAATCTCGGTATATGACCGG+AGG	0.652463	7.3:-12414290	None:intergenic
AACCAAAATCAGATAACTTT+GGG	0.415584	7.3:-12414349	None:intergenic
AAGGTCAGTATCCTTCAAGA+GGG	0.694610	7.3:+12414919	MS.gene20235:CDS
AATAACCAATAAGGTTGACA+AGG	0.678286	7.3:-12413995	None:intergenic
ACAAGAGTTATGGGAACCTA+TGG	0.503262	7.3:+12414413	MS.gene20235:CDS
ACACATTGCTGCAACAGCAA+GGG	0.638126	7.3:-12414952	None:intergenic
ACACGAATGAAAATAGCTGC+GGG	0.568062	7.3:+12414227	MS.gene20235:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAGATTGCAATATCATGTGT+TGG	+	chr7.3:12413495-12413514	MS.gene20235:intron	30.0%
AATAACCAATAAGGTTGACA+AGG	-	chr7.3:12413998-12414017	None:intergenic	30.0%
AGACAAACAATGATTTAACG+GGG	-	chr7.3:12413561-12413580	None:intergenic	30.0%
CAACATTGAATTCTTCAGAA+AGG	+	chr7.3:12413834-12413853	MS.gene20235:intron	30.0%
CACATGATATTGCAATCTTT+AGG	-	chr7.3:12413494-12413513	None:intergenic	30.0%
CTACAGTACATACATACAAT+TGG	-	chr7.3:12413344-12413363	None:intergenic	30.0%
CTTCAAAGGAGAAACATATA+TGG	+	chr7.3:12413452-12413471	MS.gene20235:intron	30.0%
GAGACAAACAATGATTTAAC+GGG	-	chr7.3:12413562-12413581	None:intergenic	30.0%
GTACATACATACAATTGGTT+AGG	-	chr7.3:12413339-12413358	None:intergenic	30.0%
GTTCTTCTCGAAATAATTAC+AGG	+	chr7.3:12414506-12414525	MS.gene20235:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7.3	gene	12412606	12415121	12412606	ID=MS.gene20235
chr7.3	mRNA	12412606	12415121	12412606	ID=MS.gene20235.t1;Parent=MS.gene20235
chr7.3	exon	12412606	12412705	12412606	ID=MS.gene20235.t1.exon1;Parent=MS.gene20235.t1
chr7.3	CDS	12412606	12412705	12412606	ID=cds.MS.gene20235.t1;Parent=MS.gene20235.t1
chr7.3	exon	12413594	12413784	12413594	ID=MS.gene20235.t1.exon2;Parent=MS.gene20235.t1
chr7.3	CDS	12413594	12413784	12413594	ID=cds.MS.gene20235.t1;Parent=MS.gene20235.t1
chr7.3	exon	12413900	12414089	12413900	ID=MS.gene20235.t1.exon3;Parent=MS.gene20235.t1
chr7.3	CDS	12413900	12414089	12413900	ID=cds.MS.gene20235.t1;Parent=MS.gene20235.t1
chr7.3	exon	12414192	12414583	12414192	ID=MS.gene20235.t1.exon4;Parent=MS.gene20235.t1
chr7.3	CDS	12414192	12414583	12414192	ID=cds.MS.gene20235.t1;Parent=MS.gene20235.t1
chr7.3	exon	12414861	12415121	12414861	ID=MS.gene20235.t1.exon5;Parent=MS.gene20235.t1
chr7.3	CDS	12414861	12415121	12414861	ID=cds.MS.gene20235.t1;Parent=MS.gene20235.t1

Gene Sequence

>MS.gene20235

ATGGGTTGGATTCCATGTTCTGGAAATTCAGGAACTAAGAAGAAGATTGTGAAGATGGAAGTTCAAGATAGTGTTGCTCCTCAGATTAAAGCTACCCCAGGTACCGTTGTTATTTTTCATTTATTAGTTTATGGTTTTGATTTGTGATACCCTATTGGAAATAATTGAGCTTTGACTTTATGAAGATGTTTTTAAATGTGTCTTGTACAAATTTATCTATTGCTTTGTTTGGTTTGGGTTTATTGTAAAAAATTAAAAAGATAAATTTTTTTGGCTGGAATTTGATGTGTTTAATGCTGCAATCTTTTTAGGGATTGACCAAAAATGGAATTTGATGTGATTTATGTATGAAATTTTACAAAACTAGCAGCAGGAGGAATATGTACATTTGCCATATACAGATCATAAAAATGTCAACATGTCTAAAAATGTTATGATTACAAAGTATTAGGCATGTGTTCTGCAAACATACATGTAGCTTTACTCTTTTATAACCTTGAATGATTAATTGAATTATTGTTGAGAGGACACTAAAGTCACCAAAGTCACAAAAACTCAAAGTTAGAAAATTGTTATACATTAAATCTGTGACATTACTCGGTGATGTCCATAATTTGCACATAAGAATGAAAGAGGTAACAAGCTGAATACACCATCCGGTAACAACACGAGGCTTCTTCTTTTATTTTGTTGTCTTTCAGCTCTGGCTTCTTCAATCACATAGCACAATCCTAACCAATTGTATGTATGTACTGTAGATGATGATTTTGAAACGGTTCATAATGTTTGTAAAGTCAGTTTGTGATTCATATTATACTAATAATCTTTAGTTATTTGTTTTTGGAACTTCAAAGGAGAAACATATATGGTCGCATTTCTATGGTTCCTAAAGATTGCAATATCATGTGTTGGTCTTAGAAGTCAAAGATAACCATGCTTTAGTGTGCTTCTCCCCCGTTAAATCATTGTTTGTCTCACTTGTGTGCAGGAAAGTTGAAGAGGAATTCATCGACAAATTCCAAAGATACATCTAAAAATGGGAACACTGAACACATTGCAGCACAAACTTTCTCATTCCGCGAGTTAGCAACTTCAACTAGAAATTTTCGAGCAGAATGTCTTTTGGGGGAGGGAGGCTTTGGTAGAGTATACAAAGGGCATCTGGAAAGTATTAATCAGGTGAGTATGCTGTATCATTTAACTGTTAAACTAAGAGATTGAATTTTGCCAACATTGAATTCTTCAGAAAGGTTGAGTTTGTAATGTATTTCATCCTTTCTAATATCGAATATAGGTTGTCGCCATCAAGCAACTTGACCGAAACGGACTCCAAGGGAACAGGGAATTCCTTGTTGAAGTATTGATGTTAAGTCTACTTCACCACCCTAACCTTGTCAACCTTATTGGTTATTGCGCCGATGGAGATCAAAGGCTTTTAGTTTATGAATATATGCCATTAGGATGCTTGGAAGATCACTTGCATGGTATTTCATTTCATTTATGCAAATGTCCTTTTCTCTCTCTCTTTTTGAATTCGGTGTTGGCTTCTTGTTGTTATTTATGGATCATATATGTTTGATTTGCAGATATTTCTCCTGCCAAGAAACGGCTTGACTGGAACACACGAATGAAAATAGCTGCGGGGGCAGCAAAGGGGTTGGAATATCTACACGACAAAGCTAATCCTCCGGTCATATACCGAGATTTGAAGTGCTCCAACATTTTGCTTGGTGAAGGATATCACCCAAAGTTATCTGATTTTGGTTTGGCCAAACTAGGCCCGGTCGGAGAAAACACCCATGTATCGACAAGAGTTATGGGAACCTATGGATATTGTGCTCCAGAGTATGCGATGACTGGTCAACTCACTCTAAAATCAGATGTTTATAGCTTTGGCGTAGTTCTTCTCGAAATAATTACAGGAAGGAAAGCAATTGACTATTCGAAATCCGCAGCAGAACAGAATCTTGTCGCATGGGTAAGAAAGTCTTTAACTCGAGAATTTGTGGTAGAATTCCTGTTCTTTTATTAGGATTTTTTATCATCCTGTTCTATGTTTTATTCATTTCTCAAGAAATTACTATCATGGTTAAAGGTAGCATTCAAAGTTTGGTGAACTTTTCAAGGGGCATATTTTAAATTGGCCTTAAATTATTGAAGTACTTAATTCACAATGAAGTTTGATATATATGGTTTGATTTTTGCTCTTTATTTGAGTAGTAATTTTGGAATGGACTATTGTGGTGTAATTGCAGGCTAGACCATTGTTCAAAGATCGAAGGAAATTTTCACAAATGGCCGATCCTATGCTTCAAGGTCAGTATCCTTCAAGAGGGCTATACCAGGCCCTTGCTGTTGCAGCAATGTGTGTTCAGGAACAAGCTAATATGCGTCCGGTTATAGCTGATGTTGTCACGGCTTTGTCTTACCTTGCATTGCAAAAACATGATCCCAATACAGTCCAAAACACTCGCCTCGCTCCTAGTACTCCTACTAGAACCAGGAGGGGGCGATGA

Protein sequence

>MS.gene20235.t1

MGWIPCSGNSGTKKKIVKMEVQDSVAPQIKATPGKLKRNSSTNSKDTSKNGNTEHIAAQTFSFRELATSTRNFRAECLLGEGGFGRVYKGHLESINQVVAIKQLDRNGLQGNREFLVEVLMLSLLHHPNLVNLIGYCADGDQRLLVYEYMPLGCLEDHLHDISPAKKRLDWNTRMKIAAGAAKGLEYLHDKANPPVIYRDLKCSNILLGEGYHPKLSDFGLAKLGPVGENTHVSTRVMGTYGYCAPEYAMTGQLTLKSDVYSFGVVLLEIITGRKAIDYSKSAAEQNLVAWARPLFKDRRKFSQMADPMLQGQYPSRGLYQALAVAAMCVQEQANMRPVIADVVTALSYLALQKHDPNTVQNTRLAPSTPTRTRRGR