AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene001085

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene001085.t1 MTR_3g030770 88.038 209 25 0 1 209 1 209 4.00e-135 378
MS.gene001085.t1 MTR_1g108510 86.124 209 29 0 1 209 1 209 3.28e-132 371
MS.gene001085.t1 MTR_1g108580 76.056 213 51 0 1 213 1 213 6.25e-117 332
MS.gene001085.t1 MTR_2g093190 80.198 202 40 0 1 202 1 202 1.03e-116 332
MS.gene001085.t1 MTR_1g105920 72.381 210 50 1 1 202 1 210 1.32e-104 301
MS.gene001085.t1 MTR_8g043650 70.000 210 55 1 1 202 1 210 8.24e-102 294
MS.gene001085.t1 MTR_1g012570 69.048 210 57 1 1 202 1 210 1.44e-101 293
MS.gene001085.t1 MTR_1g105910 69.048 210 57 1 1 202 1 210 2.83e-100 290
MS.gene001085.t1 MTR_2g030740 68.571 210 58 1 1 202 1 210 9.63e-100 289
MS.gene001085.t1 MTR_3g052920 67.619 210 60 1 1 202 1 210 3.30e-99 288
MS.gene001085.t1 MTR_0121s0080 64.286 210 67 1 1 202 1 210 1.04e-89 263
MS.gene001085.t1 MTR_1g106070 70.879 182 45 1 1 174 1 182 7.81e-88 257
MS.gene001085.t1 MTR_1g075600 62.201 209 71 1 1 201 1 209 2.42e-87 258
MS.gene001085.t1 MTR_3g052870 63.861 202 62 2 1 202 1 191 2.67e-83 246
MS.gene001085.t1 MTR_1g077360 59.048 210 78 1 1 202 1 210 5.51e-83 246
MS.gene001085.t1 MTR_1g105905 63.212 193 63 1 18 202 1 193 8.14e-83 245
MS.gene001085.t1 MTR_5g045560 59.809 209 76 1 1 201 1 209 6.10e-81 241
MS.gene001085.t1 MTR_2g085280 57.619 210 81 1 1 202 1 210 1.90e-80 240
MS.gene001085.t1 MTR_2g085250 57.619 210 81 1 1 202 1 210 2.26e-80 240
MS.gene001085.t1 MTR_5g055100 58.095 210 80 1 1 202 1 210 3.46e-80 239
MS.gene001085.t1 MTR_5g053390 59.048 210 78 1 1 202 1 210 1.33e-79 238
MS.gene001085.t1 MTR_0121s0100 82.171 129 23 0 1 129 1 129 1.48e-72 216
MS.gene001085.t1 MTR_7g062350 60.406 197 69 2 10 197 21 217 7.58e-72 219
MS.gene001085.t1 MTR_3g030780 69.531 128 39 0 1 128 1 128 2.13e-59 183
MS.gene001085.t1 MTR_3g080940 51.429 175 83 1 9 183 9 181 1.81e-56 178
MS.gene001085.t1 MTR_1g075570 54.802 177 58 2 18 186 1 163 3.34e-50 160
MS.gene001085.t1 MTR_3g067910 58.824 102 42 0 21 122 2 103 9.15e-36 122
MS.gene001085.t1 MTR_8g086290 39.394 165 90 2 5 166 8 165 3.64e-33 117
MS.gene001085.t1 MTR_2g105290 36.970 165 94 2 5 166 8 165 4.38e-31 112
MS.gene001085.t1 MTR_1g108500 59.794 97 18 1 22 118 110 185 8.15e-29 110
MS.gene001085.t1 MTR_7g028448 38.562 153 82 2 22 174 25 165 2.30e-27 102
MS.gene001085.t1 MTR_4g036915 38.562 153 82 2 22 174 25 165 2.30e-27 102
MS.gene001085.t1 MTR_3g067875 76.786 56 13 0 18 73 1 56 1.42e-23 89.7
MS.gene001085.t1 MTR_4g127140 35.429 175 93 4 5 166 8 175 3.99e-22 89.4
MS.gene001085.t1 MTR_3g067915 61.194 67 26 0 60 126 30 96 1.98e-21 85.1
MS.gene001085.t1 MTR_4g131030 35.294 136 73 2 9 129 2 137 3.64e-20 85.1
MS.gene001085.t1 MTR_1g063160 42.017 119 62 4 9 123 2 117 3.89e-20 84.0
MS.gene001085.t1 MTR_4g094632 37.795 127 70 2 9 128 2 126 5.91e-20 83.2
MS.gene001085.t1 MTR_4g094638 40.566 106 62 1 9 113 2 107 6.17e-20 83.6
MS.gene001085.t1 MTR_8g079502 53.623 69 32 0 9 77 2 70 1.32e-19 82.8
MS.gene001085.t1 MTR_1g047550 53.623 69 32 0 9 77 2 70 1.59e-19 82.4
MS.gene001085.t1 MTR_8g022970 33.735 166 91 5 2 159 13 167 2.41e-19 82.0
MS.gene001085.t1 MTR_1g054265 50.685 73 36 0 9 81 2 74 3.76e-19 81.3
MS.gene001085.t1 MTR_8g051580 37.398 123 61 3 9 131 2 108 1.19e-18 80.1
MS.gene001085.t1 MTR_8g046350 37.190 121 71 2 9 129 2 117 1.78e-18 79.3
MS.gene001085.t1 MTR_3g067870 61.905 63 24 0 16 78 83 145 3.53e-18 78.6
MS.gene001085.t1 MTR_3g005530 48.529 68 35 0 9 76 2 69 2.00e-17 77.8
MS.gene001085.t1 MTR_4g102530 46.575 73 39 0 10 82 3 75 2.39e-16 74.7
MS.gene001085.t1 MTR_3g452380 45.333 75 41 0 2 76 10 84 3.31e-16 75.1
MS.gene001085.t1 MTR_4g093970 28.293 205 102 4 10 181 29 221 3.51e-16 74.7
MS.gene001085.t1 MTR_5g032150 32.258 155 74 7 10 157 3 133 6.60e-16 73.9
MS.gene001085.t1 MTR_3g102570 41.176 102 57 3 9 109 2 101 6.75e-16 75.1
MS.gene001085.t1 MTR_5g032520 33.562 146 79 5 10 142 3 143 9.78e-16 73.6
MS.gene001085.t1 MTR_8g033270 46.250 80 39 2 7 84 2 79 1.08e-15 73.6
MS.gene001085.t1 MTR_1g101970 48.529 68 35 0 9 76 2 69 1.41e-15 72.4
MS.gene001085.t1 MTR_8g033220 41.053 95 48 1 10 96 3 97 2.84e-15 72.4
MS.gene001085.t1 MTR_8g033220 41.053 95 48 1 10 96 3 97 2.99e-15 72.0
MS.gene001085.t1 MTR_0003s0590 47.059 68 36 0 9 76 2 69 3.63e-15 72.4
MS.gene001085.t1 MTR_4g109830 38.710 93 50 3 7 98 2 88 3.82e-15 72.0
MS.gene001085.t1 MTR_5g066180 45.588 68 37 0 9 76 2 69 4.26e-15 71.6
MS.gene001085.t1 MTR_7g075870 46.269 67 36 0 10 76 3 69 4.57e-15 71.2
MS.gene001085.t1 MTR_1g053070 47.059 68 36 0 9 76 2 69 5.13e-15 72.0
MS.gene001085.t1 MTR_8g087860 45.588 68 37 0 9 76 18 85 6.57e-15 71.6
MS.gene001085.t1 MTR_6g464720 43.529 85 43 3 7 88 2 84 8.53e-15 71.2
MS.gene001085.t1 MTR_2g009890 44.118 68 38 0 9 76 2 69 1.34e-14 71.2
MS.gene001085.t1 MTR_2g017865 45.588 68 37 0 9 76 17 84 1.85e-14 70.5
MS.gene001085.t1 MTR_5g031000 44.118 68 38 0 9 76 2 69 2.04e-14 69.7
MS.gene001085.t1 MTR_5g031000 44.118 68 38 0 9 76 2 69 2.22e-14 70.1
MS.gene001085.t1 MTR_6g015975 46.479 71 35 2 7 76 2 70 3.32e-14 69.7
MS.gene001085.t1 MTR_7g016600 46.479 71 35 2 7 76 2 70 3.59e-14 69.7
MS.gene001085.t1 MTR_2g461710 53.448 58 25 1 7 64 2 57 6.02e-14 64.7
MS.gene001085.t1 MTR_7g075870 45.588 68 36 1 10 76 3 70 8.69e-14 67.8
MS.gene001085.t1 MTR_3g109930 30.488 164 98 3 27 183 20 174 1.97e-13 66.2
MS.gene001085.t1 MTR_5g046870 43.478 69 38 1 9 76 2 70 2.00e-13 64.7
MS.gene001085.t1 MTR_8g066260 43.662 71 37 2 7 76 2 70 2.82e-13 67.0
MS.gene001085.t1 MTR_1g029670 45.455 66 35 1 9 74 2 66 3.57e-13 65.5
MS.gene001085.t1 MTR_4g084740 44.444 72 39 1 9 79 2 73 4.38e-13 67.4
MS.gene001085.t1 MTR_5g046790 48.214 56 29 0 9 64 2 57 4.59e-13 65.9
MS.gene001085.t1 MTR_3g088615 42.857 70 38 1 9 76 2 71 4.70e-13 65.5
MS.gene001085.t1 MTR_1g041615 40.196 102 53 3 20 120 17 111 5.62e-13 63.9
MS.gene001085.t1 MTR_3g084980 51.786 56 27 0 9 64 2 57 6.15e-13 66.2
MS.gene001085.t1 MTR_4g109810 50.000 58 27 1 7 64 2 57 8.70e-13 65.5
MS.gene001085.t1 MTR_3g113030 33.835 133 74 5 9 128 2 133 1.06e-12 65.1
MS.gene001085.t1 MTR_5g021270 47.143 70 35 1 9 76 2 71 1.06e-12 65.1
MS.gene001085.t1 MTR_5g021270 47.143 70 35 1 9 76 2 71 1.17e-12 65.1
MS.gene001085.t1 MTR_8g097090 51.724 58 26 1 7 64 2 57 1.21e-12 65.1
MS.gene001085.t1 MTR_7g016630 40.845 71 39 2 7 76 2 70 1.52e-12 65.1
MS.gene001085.t1 MTR_7g075850 53.448 58 25 1 7 64 2 57 2.73e-12 64.3
MS.gene001085.t1 MTR_1g038300 42.857 70 38 1 9 76 2 71 5.65e-12 63.2
MS.gene001085.t1 MTR_5g066960 43.860 57 32 0 9 65 2 58 6.45e-12 59.3
MS.gene001085.t1 MTR_4g036050 28.649 185 109 6 10 187 3 171 7.78e-12 62.4
MS.gene001085.t1 MTR_4g108720 32.520 123 78 4 9 128 2 122 1.48e-11 63.2
MS.gene001085.t1 MTR_4g036050 28.125 192 111 9 10 198 3 170 2.34e-11 60.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene001085.t1 AT5G60440 53.297 182 78 4 5 179 3 184 7.52e-55 177
MS.gene001085.t1 AT1G01530 41.530 183 95 4 4 179 2 179 6.28e-38 132
MS.gene001085.t1 AT2G24840 45.062 162 76 3 9 163 63 218 1.75e-37 131
MS.gene001085.t1 AT4G36590 44.643 168 83 4 8 167 6 171 1.15e-35 126
MS.gene001085.t1 AT1G65360 40.000 180 101 4 5 179 3 180 8.97e-35 123
MS.gene001085.t1 AT2G34440 33.766 154 92 3 9 158 2 149 6.73e-23 91.3
MS.gene001085.t1 AT3G04100 32.051 156 94 3 2 149 7 158 1.21e-22 91.3
MS.gene001085.t1 AT1G72350 31.016 187 89 5 9 188 43 196 1.81e-20 86.3
MS.gene001085.t1 AT3G66656 35.659 129 79 1 9 133 2 130 2.65e-19 82.0
MS.gene001085.t1 AT1G28460 31.609 174 104 5 5 169 4 171 6.49e-18 78.2
MS.gene001085.t1 AT2G45660 48.529 68 35 0 10 77 3 70 1.04e-17 77.4
MS.gene001085.t1 AT4G09960 43.023 86 48 1 9 93 2 87 1.49e-17 78.2
MS.gene001085.t1 AT4G09960 43.023 86 48 1 9 93 2 87 1.96e-17 78.2
MS.gene001085.t1 AT4G09960 43.023 86 48 1 9 93 3 88 2.19e-17 78.2
MS.gene001085.t1 AT4G09960 43.023 86 48 1 9 93 12 97 3.51e-17 77.8
MS.gene001085.t1 AT4G09960 43.023 86 48 1 9 93 28 113 4.37e-17 77.8
MS.gene001085.t1 AT2G45660 48.529 68 35 0 10 77 3 70 6.85e-17 76.3
MS.gene001085.t1 AT2G45650 50.000 70 33 1 7 76 2 69 1.11e-16 76.6
MS.gene001085.t1 AT2G22540 33.108 148 82 4 10 157 3 133 1.72e-16 75.9
MS.gene001085.t1 AT2G22540 33.108 148 82 4 10 157 3 133 1.72e-16 75.9
MS.gene001085.t1 AT4G24540 33.108 148 82 4 9 156 2 132 1.79e-16 75.5
MS.gene001085.t1 AT4G09960 43.023 86 48 1 9 93 97 182 1.97e-16 76.6
MS.gene001085.t1 AT1G29962 27.485 171 118 3 5 169 4 174 4.32e-16 73.6
MS.gene001085.t1 AT5G51870 50.746 67 33 0 10 76 3 69 4.58e-16 73.2
MS.gene001085.t1 AT2G42830 46.667 75 38 1 2 76 12 84 7.66e-16 73.9
MS.gene001085.t1 AT2G42830 46.667 75 38 1 2 76 12 84 7.72e-16 74.3
MS.gene001085.t1 AT3G57230 42.647 68 39 0 9 76 2 69 8.27e-16 72.0
MS.gene001085.t1 AT5G51870 50.746 67 33 0 10 76 3 69 8.32e-16 73.2
MS.gene001085.t1 AT4G18960 40.385 104 50 3 5 108 16 107 1.06e-15 73.9
MS.gene001085.t1 AT5G51870 50.746 67 33 0 10 76 3 69 1.21e-15 73.2
MS.gene001085.t1 AT5G51870 50.746 67 33 0 10 76 13 79 1.39e-15 73.2
MS.gene001085.t1 AT5G51870 50.746 67 33 0 10 76 26 92 1.50e-15 72.4
MS.gene001085.t1 AT4G22950 47.761 67 35 0 10 76 3 69 1.61e-15 71.6
MS.gene001085.t1 AT3G58780 46.667 75 38 1 2 76 12 84 1.65e-15 73.2
MS.gene001085.t1 AT5G62165 46.269 67 36 0 10 76 3 69 1.82e-15 71.2
MS.gene001085.t1 AT5G62165 46.269 67 36 0 10 76 3 69 1.82e-15 71.2
MS.gene001085.t1 AT5G62165 46.269 67 36 0 10 76 3 69 1.82e-15 71.2
MS.gene001085.t1 AT3G58780 46.667 75 38 1 2 76 18 90 1.94e-15 73.2
MS.gene001085.t1 AT5G13790 48.529 68 35 0 9 76 2 69 1.96e-15 73.2
MS.gene001085.t1 AT5G62165 46.269 67 36 0 10 76 3 69 1.99e-15 69.7
MS.gene001085.t1 AT5G13790 48.529 68 35 0 9 76 2 69 2.01e-15 73.2
MS.gene001085.t1 AT4G37940 30.114 176 86 5 9 154 2 170 2.03e-15 72.4
MS.gene001085.t1 AT5G10140 49.275 69 34 1 9 76 2 70 2.07e-15 71.2
MS.gene001085.t1 AT4G37940 44.118 68 38 0 9 76 2 69 2.33e-15 72.4
MS.gene001085.t1 AT3G58780 46.667 75 38 1 2 76 12 84 2.86e-15 73.2
MS.gene001085.t1 AT4G37940 44.118 68 38 0 9 76 2 69 3.06e-15 71.2
MS.gene001085.t1 AT5G62165 46.269 67 36 0 10 76 3 69 3.65e-15 70.5
MS.gene001085.t1 AT5G62165 46.269 67 36 0 10 76 3 69 3.65e-15 70.5
MS.gene001085.t1 AT5G62165 46.269 67 36 0 10 76 3 69 3.65e-15 70.5
MS.gene001085.t1 AT5G62165 46.269 67 36 0 10 76 3 69 3.65e-15 70.5
MS.gene001085.t1 AT5G62165 46.269 67 36 0 10 76 3 69 3.65e-15 70.5
MS.gene001085.t1 AT3G54340 33.083 133 75 5 9 128 2 133 4.00e-15 72.0
MS.gene001085.t1 AT3G57390 47.143 70 35 1 7 76 2 69 4.55e-15 71.6
MS.gene001085.t1 AT3G57230 42.647 68 39 0 9 76 2 69 4.57e-15 72.0
MS.gene001085.t1 AT3G57230 42.647 68 39 0 9 76 2 69 4.57e-15 72.0
MS.gene001085.t1 AT5G10140 49.275 69 34 1 9 76 2 70 4.62e-15 70.9
MS.gene001085.t1 AT5G10140 49.275 69 34 1 9 76 2 70 5.15e-15 70.5
MS.gene001085.t1 AT5G10140 49.275 69 34 1 9 76 2 70 6.02e-15 70.9
MS.gene001085.t1 AT5G62165 46.269 67 36 0 10 76 3 69 8.28e-15 70.5
MS.gene001085.t1 AT5G62165 46.269 67 36 0 10 76 3 69 8.28e-15 70.5
MS.gene001085.t1 AT5G62165 46.269 67 36 0 10 76 3 69 8.74e-15 70.5
MS.gene001085.t1 AT5G62165 46.269 67 36 0 10 76 3 69 8.74e-15 70.5
MS.gene001085.t1 AT5G62165 46.269 67 36 0 10 76 3 69 8.74e-15 70.5
MS.gene001085.t1 AT3G57390 47.143 70 35 1 7 76 2 69 8.97e-15 71.2
MS.gene001085.t1 AT5G20240 45.205 73 38 1 9 79 2 74 9.08e-15 70.5
MS.gene001085.t1 AT4G22950 47.761 67 35 0 10 76 3 69 9.20e-15 70.9
MS.gene001085.t1 AT4G22950 47.761 67 35 0 10 76 3 69 9.20e-15 70.9
MS.gene001085.t1 AT5G20240 45.205 73 38 1 9 79 2 74 1.19e-14 68.9
MS.gene001085.t1 AT5G51860 47.761 67 35 0 10 76 3 69 1.55e-14 69.7
MS.gene001085.t1 AT5G51860 47.761 67 35 0 10 76 3 69 2.16e-14 69.7
MS.gene001085.t1 AT1G77980 43.210 81 45 1 9 88 2 82 3.16e-14 70.5
MS.gene001085.t1 AT2G22540 33.333 162 87 6 10 158 3 156 4.17e-14 69.3
MS.gene001085.t1 AT3G30260 42.029 69 39 1 9 76 2 70 4.25e-14 69.3
MS.gene001085.t1 AT3G61120 44.118 68 38 0 9 76 2 69 4.79e-14 69.3
MS.gene001085.t1 AT1G26310 40.860 93 48 3 7 97 2 89 4.89e-14 69.3
MS.gene001085.t1 AT1G77950 40.741 81 47 1 9 88 2 82 5.02e-14 69.3
MS.gene001085.t1 AT1G77950 40.741 81 47 1 9 88 2 82 5.02e-14 69.3
MS.gene001085.t1 AT1G77950 40.741 81 47 1 9 88 2 82 5.02e-14 69.3
MS.gene001085.t1 AT1G77950 40.741 81 47 1 9 88 2 82 5.02e-14 69.3
MS.gene001085.t1 AT3G58780 50.769 65 30 1 2 66 12 74 7.78e-14 68.6
MS.gene001085.t1 AT5G15800 46.479 71 35 2 7 76 2 70 8.97e-14 68.6
MS.gene001085.t1 AT4G11880 54.545 55 25 0 10 64 3 57 9.39e-14 67.0
MS.gene001085.t1 AT4G11880 54.545 55 25 0 10 64 3 57 9.39e-14 67.0
MS.gene001085.t1 AT1G69120 39.785 93 51 2 7 99 2 89 9.91e-14 68.2
MS.gene001085.t1 AT5G65050 44.928 69 37 1 9 76 2 70 1.02e-13 67.0
MS.gene001085.t1 AT5G60910 45.070 71 36 2 7 76 2 70 1.02e-13 68.2
MS.gene001085.t1 AT3G58780 50.769 65 30 1 2 66 12 74 1.09e-13 68.6
MS.gene001085.t1 AT2G14210 42.029 69 39 1 9 76 2 70 1.19e-13 67.8
MS.gene001085.t1 AT5G65060 28.000 200 106 7 9 185 2 186 1.26e-13 67.0
MS.gene001085.t1 AT5G65060 30.636 173 103 6 9 180 2 158 1.34e-13 67.0
MS.gene001085.t1 AT1G22130 36.559 93 58 1 9 100 2 94 1.50e-13 68.6
MS.gene001085.t1 AT5G15800 46.479 71 35 2 7 76 2 70 1.61e-13 67.8
MS.gene001085.t1 AT2G14210 42.029 69 39 1 9 76 2 70 1.65e-13 67.4
MS.gene001085.t1 AT1G69120 39.785 93 51 2 7 99 2 89 1.66e-13 67.8
MS.gene001085.t1 AT4G11880 54.545 55 25 0 10 64 3 57 1.79e-13 67.4
MS.gene001085.t1 AT4G11880 54.545 55 25 0 10 64 3 57 1.79e-13 67.4
MS.gene001085.t1 AT2G03710 51.786 56 27 0 9 64 2 57 2.46e-13 66.2
MS.gene001085.t1 AT5G65050 33.898 118 75 3 9 124 2 118 3.17e-13 65.9
MS.gene001085.t1 AT5G65060 44.928 69 37 1 9 76 2 70 3.37e-13 65.9
MS.gene001085.t1 AT5G65050 44.928 69 37 1 9 76 2 70 3.66e-13 65.9
MS.gene001085.t1 AT5G65050 44.928 69 37 1 9 76 2 70 4.39e-13 65.5
MS.gene001085.t1 AT3G02310 45.070 71 36 2 7 76 2 70 4.69e-13 65.9
MS.gene001085.t1 AT5G23260 46.667 75 38 1 5 77 14 88 5.85e-13 66.6
MS.gene001085.t1 AT5G23260 46.667 75 38 1 5 77 14 88 6.21e-13 66.2
MS.gene001085.t1 AT1G28450 28.571 175 111 6 5 169 4 174 7.32e-13 65.1
MS.gene001085.t1 AT1G24260 51.724 58 26 1 7 64 2 57 8.76e-13 65.5
MS.gene001085.t1 AT1G24260 51.724 58 26 1 7 64 2 57 9.30e-13 65.9
MS.gene001085.t1 AT1G24260 51.724 58 26 1 7 64 2 57 9.86e-13 65.5
MS.gene001085.t1 AT1G71692 43.478 69 38 1 10 77 3 71 1.14e-12 64.7
MS.gene001085.t1 AT5G23260 47.887 71 35 1 9 77 2 72 1.19e-12 65.5
MS.gene001085.t1 AT2G03710 51.786 56 27 0 9 64 2 57 1.32e-12 65.5
MS.gene001085.t1 AT5G23260 47.887 71 35 1 9 77 2 72 1.35e-12 65.1
MS.gene001085.t1 AT2G03710 51.786 56 27 0 9 64 2 57 1.37e-12 65.5
MS.gene001085.t1 AT3G02310 50.000 56 28 0 9 64 2 57 1.76e-12 65.1
MS.gene001085.t1 AT5G65070 35.227 88 57 0 9 96 2 89 2.14e-12 62.8
MS.gene001085.t1 AT2G22630 39.706 68 41 0 9 76 2 69 5.69e-12 63.2
MS.gene001085.t1 AT2G22630 39.706 68 41 0 9 76 2 69 5.69e-12 63.2
MS.gene001085.t1 AT5G65070 35.227 88 57 0 9 96 2 89 6.09e-12 62.8
MS.gene001085.t1 AT4G37435 27.564 156 83 4 9 134 2 157 6.71e-12 62.4
MS.gene001085.t1 AT1G18750 38.667 75 44 1 9 81 2 76 1.17e-11 63.5
MS.gene001085.t1 AT1G18750 38.667 75 44 1 9 81 2 76 1.41e-11 63.2
MS.gene001085.t1 AT1G47760 38.806 67 41 0 9 75 2 68 1.45e-11 61.2
MS.gene001085.t1 AT1G18750 38.667 75 44 1 9 81 2 76 1.46e-11 63.2
MS.gene001085.t1 AT5G65070 37.681 69 42 1 9 76 2 70 3.04e-11 60.8
MS.gene001085.t1 AT5G27130 43.902 82 41 3 5 82 10 90 6.49e-11 60.8

Find 36 sgRNAs with CRISPR-Local

Find 45 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTTCAGATTGTTGAGTATT+TGG 0.166839 3.4:-24173743 None:intergenic
TCAACTTGAATTATTCAAAA+AGG 0.284145 3.4:+24173616 MS.gene001085:CDS
TCCGGTTGACGGAATGAATA+AGG 0.318001 3.4:+24173592 MS.gene001085:CDS
CTCATCGTCAATCTTCTTCT+CGG 0.373508 3.4:-24173522 None:intergenic
TCCTTATTCATTCCGTCAAC+CGG 0.377947 3.4:-24173593 None:intergenic
TCTCCGTTTCCTTGAGCAAA+TGG 0.404320 3.4:-24173550 None:intergenic
AGTGAGCTTTGCACCCTTTG+TGG 0.424656 3.4:+24173296 MS.gene001085:CDS
TGGTGGGCTTATCCGGTTGA+CGG 0.441959 3.4:+24173581 MS.gene001085:CDS
TCTATGACCGTATGAAGATT+CGG 0.442813 3.4:-24173377 None:intergenic
CTATGACCGTATGAAGATTC+GGG 0.447344 3.4:-24173376 None:intergenic
GCCTTTCTTTCCACTCGACA+TGG 0.467815 3.4:-24173177 None:intergenic
GTTGAGTATTTGGCTGATCA+TGG 0.473197 3.4:-24173733 None:intergenic
AGCAGTATCTGCACCACAAA+GGG 0.482731 3.4:-24173309 None:intergenic
TGAGGCTGCAATTGCAACAT+AGG 0.486801 3.4:-24173792 None:intergenic
GAGCCATTTGCTCAAGGAAA+CGG 0.489556 3.4:+24173547 MS.gene001085:CDS
CTTTCTCAAAGCGTCGTAGC+TGG 0.499726 3.4:+24173258 MS.gene001085:CDS
TCTCGATCTTTAGGCGACCT+CGG 0.511941 3.4:-24173199 None:intergenic
CGACGCTTTGAGAAAGTCAC+TGG 0.566295 3.4:-24173251 None:intergenic
GCCATGTCGAGTGGAAAGAA+AGG 0.571063 3.4:+24173176 None:intergenic
CTCGTTGTATTCTCACCTAG+TGG 0.580084 3.4:+24173332 MS.gene001085:CDS
CAACACCATGCAACTCATTG+AGG 0.583327 3.4:+24173433 MS.gene001085:CDS
TCGAGTGGAAAGAAAGGCCG+AGG 0.584906 3.4:+24173182 MS.gene001085:CDS
ATTGATCTATCAAACAAATG+AGG 0.586320 3.4:-24173810 None:intergenic
TGGTCACCCGAATCTTCATA+CGG 0.587222 3.4:+24173370 MS.gene001085:CDS
TGAGCTGAGCCATTTGCTCA+AGG 0.597593 3.4:+24173541 MS.gene001085:CDS
AGCATTGAGTTCACGAACGT+TGG 0.603238 3.4:-24173468 None:intergenic
ATGAAGATTCGGGTGACCAA+AGG 0.609879 3.4:-24173366 None:intergenic
TGTATTCTCACCTAGTGGAA+AGG 0.611194 3.4:+24173337 MS.gene001085:CDS
GTGGTACAAGAGAAAGATAG+TGG 0.616578 3.4:-24173400 None:intergenic
AAGGAAAATACCTTTCCACT+AGG 0.624124 3.4:-24173347 None:intergenic
GACTCAAATCAACAACACAC+TGG 0.627768 3.4:+24173496 MS.gene001085:CDS
GAGCAGTATCTGCACCACAA+AGG 0.630236 3.4:-24173310 None:intergenic
GCTTTGAGAAAGTCACTGGT+AGG 0.636884 3.4:-24173247 None:intergenic
TATGTGTCAGCCATGTCGAG+TGG 0.637090 3.4:+24173167 None:intergenic
GTTCACGAACGTTGGCATTG+CGG 0.638735 3.4:-24173460 None:intergenic
GTGAGCCTCAATGAGTTGCA+TGG 0.660003 3.4:-24173438 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! GATTTTGAAAAATAATATGA+TGG - chr3.4:24173773-24173792 None:intergenic 15.0%
!! TCAACTTGAATTATTCAAAA+AGG + chr3.4:24173616-24173635 MS.gene001085:CDS 20.0%
! ATTTCAGATTGTTGAGTATT+TGG - chr3.4:24173746-24173765 None:intergenic 25.0%
!! TGAATTATTCAAAAAGGCAT+TGG + chr3.4:24173622-24173641 MS.gene001085:CDS 25.0%
!! ATTATTCAAAAAGGCATTGG+AGG + chr3.4:24173625-24173644 MS.gene001085:CDS 30.0%
!! TCTTTTTCATCTCGATCTTT+AGG - chr3.4:24173211-24173230 None:intergenic 30.0%
AAGGAAAATACCTTTCCACT+AGG - chr3.4:24173350-24173369 None:intergenic 35.0%
TCTATGACCGTATGAAGATT+CGG - chr3.4:24173380-24173399 None:intergenic 35.0%
! AGGAAACGGAGACTAATTTT+TGG + chr3.4:24173561-24173580 MS.gene001085:CDS 35.0%
!! AAACGGAGACTAATTTTTGG+TGG + chr3.4:24173564-24173583 MS.gene001085:CDS 35.0%
!! GAAGCATTGCCAACAAAAAA+TGG - chr3.4:24173695-24173714 None:intergenic 35.0%
!!! AACGGAGACTAATTTTTGGT+GGG + chr3.4:24173565-24173584 MS.gene001085:CDS 35.0%
!!! AGTGGAAAGGTATTTTCCTT+TGG + chr3.4:24173350-24173369 MS.gene001085:CDS 35.0%
!!! CGAACTCTTCCATTTTTTGT+TGG + chr3.4:24173683-24173702 MS.gene001085:CDS 35.0%
!!! TAATTTTTGGTGGGCTTATC+CGG + chr3.4:24173574-24173593 MS.gene001085:CDS 35.0%
CTATGACCGTATGAAGATTC+GGG - chr3.4:24173379-24173398 None:intergenic 40.0%
CTCATCGTCAATCTTCTTCT+CGG - chr3.4:24173525-24173544 None:intergenic 40.0%
GACTCAAATCAACAACACAC+TGG + chr3.4:24173496-24173515 MS.gene001085:CDS 40.0%
GTGGTACAAGAGAAAGATAG+TGG - chr3.4:24173403-24173422 None:intergenic 40.0%
GTTGAGTATTTGGCTGATCA+TGG - chr3.4:24173736-24173755 None:intergenic 40.0%
TCCTTATTCATTCCGTCAAC+CGG - chr3.4:24173596-24173615 None:intergenic 40.0%
TGTATTCTCACCTAGTGGAA+AGG + chr3.4:24173337-24173356 MS.gene001085:CDS 40.0%
!!! ATGGTGTTGTAGTTTTGTGG+TGG - chr3.4:24173422-24173441 None:intergenic 40.0%
!!! TGCATGGTGTTGTAGTTTTG+TGG - chr3.4:24173425-24173444 None:intergenic 40.0%
AGCAGTATCTGCACCACAAA+GGG - chr3.4:24173312-24173331 None:intergenic 45.0%
ATGAAGATTCGGGTGACCAA+AGG - chr3.4:24173369-24173388 None:intergenic 45.0%
CAACACCATGCAACTCATTG+AGG + chr3.4:24173433-24173452 MS.gene001085:CDS 45.0%
CTCGTTGTATTCTCACCTAG+TGG + chr3.4:24173332-24173351 MS.gene001085:CDS 45.0%
GAGCCATTTGCTCAAGGAAA+CGG + chr3.4:24173547-24173566 MS.gene001085:CDS 45.0%
TCCGGTTGACGGAATGAATA+AGG + chr3.4:24173592-24173611 MS.gene001085:CDS 45.0%
TCTCCGTTTCCTTGAGCAAA+TGG - chr3.4:24173553-24173572 None:intergenic 45.0%
TGAGGCTGCAATTGCAACAT+AGG - chr3.4:24173795-24173814 None:intergenic 45.0%
TGGTCACCCGAATCTTCATA+CGG + chr3.4:24173370-24173389 MS.gene001085:CDS 45.0%
! AGCATTGAGTTCACGAACGT+TGG - chr3.4:24173471-24173490 None:intergenic 45.0%
!! GCTTTGAGAAAGTCACTGGT+AGG - chr3.4:24173250-24173269 None:intergenic 45.0%
AGTGAGCTTTGCACCCTTTG+TGG + chr3.4:24173296-24173315 MS.gene001085:CDS 50.0%
GAGCAGTATCTGCACCACAA+AGG - chr3.4:24173313-24173332 None:intergenic 50.0%
GTGAGCCTCAATGAGTTGCA+TGG - chr3.4:24173441-24173460 None:intergenic 50.0%
GTTCACGAACGTTGGCATTG+CGG - chr3.4:24173463-24173482 None:intergenic 50.0%
TCTCGATCTTTAGGCGACCT+CGG - chr3.4:24173202-24173221 None:intergenic 50.0%
TGAGCTGAGCCATTTGCTCA+AGG + chr3.4:24173541-24173560 MS.gene001085:CDS 50.0%
!! CGACGCTTTGAGAAAGTCAC+TGG - chr3.4:24173254-24173273 None:intergenic 50.0%
!! CTTTCTCAAAGCGTCGTAGC+TGG + chr3.4:24173258-24173277 MS.gene001085:CDS 50.0%
TCGAGTGGAAAGAAAGGCCG+AGG + chr3.4:24173182-24173201 MS.gene001085:CDS 55.0%
!! TGGTGGGCTTATCCGGTTGA+CGG + chr3.4:24173581-24173600 MS.gene001085:CDS 55.0%


Chromosome Type Strat End Strand Name
chr3.4 gene 24173179 24173823 24173179 ID=MS.gene001085
chr3.4 mRNA 24173179 24173823 24173179 ID=MS.gene001085.t1;Parent=MS.gene001085
chr3.4 exon 24173179 24173823 24173179 ID=MS.gene001085.t1.exon1;Parent=MS.gene001085.t1
chr3.4 CDS 24173179 24173823 24173179 ID=cds.MS.gene001085.t1;Parent=MS.gene001085.t1
Gene Sequence

>MS.gene001085

ATGTCGAGTGGAAAGAAAGGCCGAGGTCGCCTAAAGATCGAGATGAAAAAGATGAGCAACGAGAGCAACCTACCAGTGACTTTCTCAAAGCGTCGTAGCTGGCTCTTCAAGAAAGCTAGTGAGCTTTGCACCCTTTGTGGTGCAGATACTGCTCTCGTTGTATTCTCACCTAGTGGAAAGGTATTTTCCTTTGGTCACCCGAATCTTCATACGGTCATAGACCACTATCTTTCTCTTGTACCACCACAAAACTACAACACCATGCAACTCATTGAGGCTCACCGCAATGCCAACGTTCGTGAACTCAATGCTCAGATGACTCAAATCAACAACACACTGGATGCCGAGAAGAAGATTGACGATGAGCTGAGCCATTTGCTCAAGGAAACGGAGACTAATTTTTGGTGGGCTTATCCGGTTGACGGAATGAATAAGGATCAACTTGAATTATTCAAAAAGGCATTGGAGGTGCTTAAGAAACTTCTAATTCATCATGCTACAACTCGAACTCTTCCATTTTTTGTTGGCAATGCTTCTTTCTCGAACATTTATCTCCATGATCAGCCAAATACTCAACAATCTGAAATGTTGCCATCATATTATTTTTCAAAATCCTATGTTGCAATTGCAGCCTCATTTGTTTGA
Protein sequence

>MS.gene001085.t1

MSSGKKGRGRLKIEMKKMSNESNLPVTFSKRRSWLFKKASELCTLCGADTALVVFSPSGKVFSFGHPNLHTVIDHYLSLVPPQNYNTMQLIEAHRNANVRELNAQMTQINNTLDAEKKIDDELSHLLKETETNFWWAYPVDGMNKDQLELFKKALEVLKKLLIHHATTRTLPFFVGNASFSNIYLHDQPNTQQSEMLPSYYFSKSYVAIAASFV