Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22094.t1 | XP_024636027.1 | 99.4 | 168 | 1 | 0 | 25 | 192 | 77 | 244 | 8.80E-83 | 316.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22094.t1 | Q93XH4 | 69.0 | 168 | 48 | 3 | 25 | 192 | 62 | 225 | 4.5e-51 | 202.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22094.t1 | K4JRB1 | 99.4 | 168 | 1 | 0 | 25 | 192 | 77 | 244 | 6.4e-83 | 316.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22094.t1 | MTR_3g452380 | 99.405 | 168 | 1 | 0 | 25 | 192 | 77 | 244 | 1.06e-120 | 342 |
| MS.gene22094.t1 | MTR_8g087860 | 51.786 | 168 | 80 | 1 | 25 | 192 | 78 | 244 | 1.12e-53 | 172 |
| MS.gene22094.t1 | MTR_2g017865 | 48.421 | 190 | 70 | 4 | 25 | 192 | 77 | 260 | 3.00e-50 | 164 |
| MS.gene22094.t1 | MTR_3g005530 | 47.337 | 169 | 79 | 3 | 25 | 191 | 62 | 222 | 7.13e-45 | 149 |
| MS.gene22094.t1 | MTR_7g075850 | 37.838 | 111 | 68 | 1 | 24 | 134 | 63 | 172 | 1.54e-16 | 76.3 |
| MS.gene22094.t1 | MTR_8g033270 | 37.500 | 112 | 70 | 0 | 23 | 134 | 60 | 171 | 5.98e-16 | 74.3 |
| MS.gene22094.t1 | MTR_8g033220 | 32.857 | 140 | 86 | 3 | 28 | 161 | 65 | 202 | 8.04e-15 | 71.2 |
| MS.gene22094.t1 | MTR_8g033220 | 32.857 | 140 | 86 | 3 | 28 | 161 | 65 | 202 | 8.39e-15 | 70.9 |
| MS.gene22094.t1 | MTR_5g046790 | 31.126 | 151 | 82 | 3 | 7 | 150 | 60 | 195 | 2.21e-13 | 66.6 |
| MS.gene22094.t1 | MTR_8g033250 | 31.429 | 140 | 88 | 3 | 28 | 161 | 7 | 144 | 1.38e-12 | 63.9 |
| MS.gene22094.t1 | MTR_2g461760 | 32.500 | 120 | 79 | 1 | 29 | 146 | 5 | 124 | 6.67e-12 | 62.0 |
| MS.gene22094.t1 | MTR_2g461760 | 32.500 | 120 | 79 | 1 | 29 | 146 | 5 | 124 | 8.23e-12 | 61.6 |
| MS.gene22094.t1 | MTR_4g109830 | 33.065 | 124 | 68 | 2 | 7 | 130 | 60 | 168 | 1.62e-11 | 62.0 |
| MS.gene22094.t1 | MTR_8g066260 | 34.532 | 139 | 76 | 2 | 7 | 145 | 60 | 183 | 2.01e-11 | 62.0 |
| MS.gene22094.t1 | MTR_5g066990 | 39.773 | 88 | 51 | 2 | 25 | 112 | 6 | 91 | 3.69e-11 | 60.1 |
| MS.gene22094.t1 | MTR_5g066990 | 39.773 | 88 | 51 | 2 | 25 | 112 | 6 | 91 | 4.44e-11 | 60.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22094.t1 | AT3G58780 | 63.584 | 173 | 57 | 3 | 25 | 192 | 83 | 254 | 2.16e-68 | 210 |
| MS.gene22094.t1 | AT3G58780 | 63.584 | 173 | 57 | 3 | 25 | 192 | 77 | 248 | 2.59e-68 | 210 |
| MS.gene22094.t1 | AT3G58780 | 63.584 | 173 | 57 | 3 | 25 | 192 | 102 | 273 | 5.08e-68 | 210 |
| MS.gene22094.t1 | AT2G42830 | 62.573 | 171 | 60 | 2 | 25 | 192 | 77 | 246 | 8.07e-68 | 208 |
| MS.gene22094.t1 | AT2G42830 | 61.850 | 173 | 60 | 3 | 25 | 192 | 77 | 248 | 6.91e-66 | 204 |
| MS.gene22094.t1 | AT3G58780 | 62.874 | 167 | 56 | 3 | 31 | 192 | 76 | 241 | 2.30e-64 | 199 |
| MS.gene22094.t1 | AT3G58780 | 53.398 | 206 | 57 | 4 | 25 | 192 | 77 | 281 | 1.70e-61 | 193 |
| MS.gene22094.t1 | AT4G18960 | 53.409 | 176 | 73 | 4 | 25 | 192 | 78 | 252 | 2.17e-54 | 174 |
| MS.gene22094.t1 | AT4G18960 | 53.757 | 173 | 71 | 4 | 28 | 192 | 67 | 238 | 2.53e-53 | 171 |
| MS.gene22094.t1 | AT4G18960 | 53.757 | 173 | 71 | 4 | 28 | 192 | 67 | 238 | 2.53e-53 | 171 |
| MS.gene22094.t1 | AT4G09960 | 50.980 | 153 | 69 | 2 | 25 | 176 | 63 | 210 | 7.30e-46 | 152 |
| MS.gene22094.t1 | AT4G09960 | 50.980 | 153 | 69 | 2 | 25 | 176 | 62 | 209 | 7.82e-46 | 152 |
| MS.gene22094.t1 | AT4G09960 | 50.980 | 153 | 69 | 2 | 25 | 176 | 72 | 219 | 9.91e-46 | 152 |
| MS.gene22094.t1 | AT4G09960 | 50.980 | 153 | 69 | 2 | 25 | 176 | 88 | 235 | 2.69e-45 | 151 |
| MS.gene22094.t1 | AT4G09960 | 49.367 | 158 | 70 | 3 | 24 | 176 | 156 | 308 | 1.45e-42 | 146 |
| MS.gene22094.t1 | AT4G18960 | 58.182 | 110 | 46 | 0 | 28 | 137 | 67 | 176 | 2.34e-41 | 139 |
| MS.gene22094.t1 | AT4G09960 | 47.020 | 151 | 60 | 3 | 25 | 174 | 62 | 193 | 8.99e-37 | 128 |
| MS.gene22094.t1 | AT5G60910 | 33.051 | 118 | 79 | 0 | 29 | 146 | 5 | 122 | 4.38e-15 | 70.9 |
| MS.gene22094.t1 | AT2G45650 | 31.788 | 151 | 93 | 3 | 23 | 171 | 60 | 202 | 4.53e-15 | 72.0 |
| MS.gene22094.t1 | AT5G60910 | 33.051 | 118 | 79 | 0 | 29 | 146 | 67 | 184 | 1.26e-14 | 70.9 |
| MS.gene22094.t1 | AT3G57230 | 31.034 | 116 | 69 | 2 | 13 | 118 | 6 | 120 | 4.20e-12 | 63.2 |
| MS.gene22094.t1 | AT3G57230 | 31.034 | 116 | 69 | 2 | 13 | 118 | 6 | 120 | 4.20e-12 | 63.2 |
| MS.gene22094.t1 | AT1G26310 | 33.333 | 147 | 79 | 3 | 10 | 156 | 63 | 190 | 6.00e-12 | 63.5 |
| MS.gene22094.t1 | AT2G45660 | 30.631 | 111 | 77 | 0 | 28 | 138 | 65 | 175 | 1.31e-11 | 62.0 |
| MS.gene22094.t1 | AT3G57230 | 34.043 | 94 | 61 | 1 | 25 | 118 | 62 | 154 | 1.96e-11 | 62.0 |
| MS.gene22094.t1 | AT3G57230 | 34.043 | 94 | 61 | 1 | 25 | 118 | 62 | 154 | 1.96e-11 | 62.0 |
| MS.gene22094.t1 | AT1G69120 | 33.036 | 112 | 73 | 2 | 29 | 139 | 5 | 115 | 5.35e-11 | 60.1 |
Find 39 sgRNAs with CRISPR-Local
Find 163 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTGCATTAACAACTATATT+TGG | 0.174488 | 3.4:+43666153 | None:intergenic |
| TCGAATCTGCCTTCTCAATT+TGG | 0.180584 | 3.4:+43668496 | None:intergenic |
| CATTTCTTGTGCGTTGGATT+GGG | 0.242501 | 3.4:-43669123 | MS.gene22094:CDS |
| TGTGTATCGGATTAAACTTC+TGG | 0.313853 | 3.4:-43666127 | MS.gene22094:CDS |
| GCATTTCTTGTGCGTTGGAT+TGG | 0.320062 | 3.4:-43669124 | MS.gene22094:CDS |
| ATCTGATCCAAGCAGATTTA+CGG | 0.335141 | 3.4:+43666549 | None:intergenic |
| AGATACAGATTCTGCGTTAG+TGG | 0.372608 | 3.4:+43668728 | None:intergenic |
| GATTTACGGGAAAGAAATTT+CGG | 0.378533 | 3.4:+43666563 | None:intergenic |
| GGCAAAATCTTCTTCATTGA+GGG | 0.384709 | 3.4:+43669703 | None:intergenic |
| TCAATTTGGATGATTCTTGC+TGG | 0.395773 | 3.4:+43668510 | None:intergenic |
| CGGTCATATGCTTGTGATGA+AGG | 0.400301 | 3.4:+43666583 | None:intergenic |
| GAGATATTCAGAATCTAAAT+AGG | 0.416939 | 3.4:-43668475 | MS.gene22094:intron |
| TCTGATCCAAGCAGATTTAC+GGG | 0.422390 | 3.4:+43666550 | None:intergenic |
| TTCTTTCCCGTAAATCTGCT+TGG | 0.437872 | 3.4:-43666556 | MS.gene22094:CDS |
| AAAGAATCTCGAGGGTAGAT+TGG | 0.440551 | 3.4:-43668320 | MS.gene22094:CDS |
| ACACAAGTTGGAGCGCAGTT+TGG | 0.446128 | 3.4:+43666503 | None:intergenic |
| TGATCACACATTGTTTGATC+TGG | 0.450279 | 3.4:+43666613 | None:intergenic |
| TGGCAAAATCTTCTTCATTG+AGG | 0.474070 | 3.4:+43669702 | None:intergenic |
| AAGCAGAGTTAGATCTAGAA+AGG | 0.478447 | 3.4:-43668287 | MS.gene22094:intron |
| TCAGGGCATTTCTTGTGCGT+TGG | 0.481600 | 3.4:-43669129 | MS.gene22094:intron |
| TGAGACGTTGTTTGCTGATG+TGG | 0.507873 | 3.4:-43667527 | MS.gene22094:CDS |
| ATTTCTTGTGCGTTGGATTG+GGG | 0.507947 | 3.4:-43669122 | MS.gene22094:intron |
| ATATGCTTGTGATGAAGGTA+AGG | 0.525429 | 3.4:+43666588 | None:intergenic |
| CTCGAGGGTAGATTGGAGAA+AGG | 0.529688 | 3.4:-43668313 | MS.gene22094:CDS |
| ATATGAATGCTTACACAAGT+TGG | 0.536621 | 3.4:+43666491 | None:intergenic |
| ATTAACAACTATATTTGGCT+CGG | 0.540398 | 3.4:+43666158 | None:intergenic |
| CAACTATATTTGGCTCGGAA+AGG | 0.548906 | 3.4:+43666163 | None:intergenic |
| CACATCCTTGGTGAAGCTCT+AGG | 0.550741 | 3.4:-43668364 | MS.gene22094:CDS |
| TAACAATTATCTACGAGCTA+AGG | 0.555922 | 3.4:-43666821 | MS.gene22094:intron |
| GCAAAATCTTCTTCATTGAG+GGG | 0.564321 | 3.4:+43669704 | None:intergenic |
| TTAATGCAGAAGTTGTGTAT+CGG | 0.580086 | 3.4:-43666140 | MS.gene22094:CDS |
| TGTATCTGAAGCTAATACCC+AGG | 0.584785 | 3.4:-43668712 | MS.gene22094:intron |
| AAGAATCATCCAAATTGAGA+AGG | 0.597770 | 3.4:-43668505 | MS.gene22094:CDS |
| TGTGGAGTTCATGCAAAAGC+GGG | 0.598411 | 3.4:-43667509 | MS.gene22094:intron |
| GTGTTAGAGCAACTATTGAA+AGG | 0.619419 | 3.4:-43668773 | MS.gene22094:CDS |
| CAAAGAACTAAAGAATCTCG+AGG | 0.620859 | 3.4:-43668329 | MS.gene22094:CDS |
| ATGTGGAGTTCATGCAAAAG+CGG | 0.623084 | 3.4:-43667510 | MS.gene22094:CDS |
| AAAGAACTAAAGAATCTCGA+GGG | 0.657285 | 3.4:-43668328 | MS.gene22094:CDS |
| GAGATCCTAGAGCTTCACCA+AGG | 0.715769 | 3.4:+43668359 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTAAAATTATATTTTTT+TGG | - | chr3.4:43668016-43668035 | MS.gene22094:intron | 0.0% |
| !! | CTTATTAATTATTTAATCAA+TGG | + | chr3.4:43667440-43667459 | None:intergenic | 10.0% |
| !!! | ATGTTAATTTTCATATTTTT+TGG | + | chr3.4:43668198-43668217 | None:intergenic | 10.0% |
| !!! | ATTTAGAATTAATTAATTGA+CGG | - | chr3.4:43668855-43668874 | MS.gene22094:intron | 10.0% |
| !!! | TAAAAAATTATCTATCATTT+TGG | + | chr3.4:43666838-43666857 | None:intergenic | 10.0% |
| !!! | TATAATTCTACATATTTTTT+TGG | + | chr3.4:43667605-43667624 | None:intergenic | 10.0% |
| !! | AAAAGAAATAAAATCTAACA+AGG | + | chr3.4:43668269-43668288 | None:intergenic | 15.0% |
| !! | AACTTTAATAAATGAGAATA+AGG | + | chr3.4:43666934-43666953 | None:intergenic | 15.0% |
| !! | AGTTATTAGTATTATTGAAT+TGG | - | chr3.4:43666460-43666479 | MS.gene22094:intron | 15.0% |
| !! | ATGATGTTAATGTATATATT+TGG | - | chr3.4:43668511-43668530 | MS.gene22094:CDS | 15.0% |
| !! | TACTTCAATAAGATATAATT+TGG | - | chr3.4:43668440-43668459 | MS.gene22094:intron | 15.0% |
| !! | TGAAATTAATTACATATGTA+GGG | + | chr3.4:43668598-43668617 | None:intergenic | 15.0% |
| !! | TGTGAAATTTATTGATAAAA+TGG | + | chr3.4:43667685-43667704 | None:intergenic | 15.0% |
| !! | TTGAAATTAATTACATATGT+AGG | + | chr3.4:43668599-43668618 | None:intergenic | 15.0% |
| !! | TTGATTGTATATTAATTCTA+GGG | + | chr3.4:43667806-43667825 | None:intergenic | 15.0% |
| !!! | AGTTTTACATATTAAATCAA+GGG | - | chr3.4:43669558-43669577 | MS.gene22094:intron | 15.0% |
| !!! | ATCATCCAATTTTAAATTAA+TGG | - | chr3.4:43668824-43668843 | MS.gene22094:intron | 15.0% |
| !!! | GTTAATATATTGACTATAAA+TGG | + | chr3.4:43668540-43668559 | None:intergenic | 15.0% |
| !!! | TCATTCTGTTTTTTTTTTTT+TGG | + | chr3.4:43667933-43667952 | None:intergenic | 15.0% |
| !!! | TTGTTAGATTTTATTTCTTT+TGG | - | chr3.4:43668268-43668287 | MS.gene22094:intron | 15.0% |
| !! | AATATATTCATATAGGGTAT+AGG | + | chr3.4:43668571-43668590 | None:intergenic | 20.0% |
| !! | ACAAAAATAATATTTCCAGT+TGG | - | chr3.4:43668128-43668147 | MS.gene22094:intron | 20.0% |
| !! | ATATAAATGTGATTTCTCAA+TGG | + | chr3.4:43669092-43669111 | None:intergenic | 20.0% |
| !! | ATATATTCATATAGGGTATA+GGG | + | chr3.4:43668570-43668589 | None:intergenic | 20.0% |
| !! | ATGTGATAGTTAAACTTAAT+CGG | + | chr3.4:43668472-43668491 | None:intergenic | 20.0% |
| !! | CAAAAAAATCAAGACAATAT+AGG | + | chr3.4:43666795-43666814 | None:intergenic | 20.0% |
| !! | CAAAAATAATATTTCCAGTT+GGG | - | chr3.4:43668129-43668148 | MS.gene22094:intron | 20.0% |
| !! | GAAATTTATTGATAAAATGG+TGG | + | chr3.4:43667682-43667701 | None:intergenic | 20.0% |
| !! | GTGAATAAATTTAATTACCT+GGG | + | chr3.4:43667154-43667173 | None:intergenic | 20.0% |
| !! | GTTGATTGTATATTAATTCT+AGG | + | chr3.4:43667807-43667826 | None:intergenic | 20.0% |
| !! | TCAATAAGATATAATTTGGT+TGG | - | chr3.4:43668444-43668463 | MS.gene22094:intron | 20.0% |
| !! | TCTTCTAGTATATTAACTAT+TGG | - | chr3.4:43669381-43669400 | MS.gene22094:intron | 20.0% |
| !! | TGATTTAATATGTAAAACTC+AGG | + | chr3.4:43669557-43669576 | None:intergenic | 20.0% |
| !! | TGTGAATAAATTTAATTACC+TGG | + | chr3.4:43667155-43667174 | None:intergenic | 20.0% |
| !! | TTGAAATTTACTTTCAGATA+AGG | + | chr3.4:43666178-43666197 | None:intergenic | 20.0% |
| !! | TTTGCTTGGAAATATATATT+AGG | + | chr3.4:43666999-43667018 | None:intergenic | 20.0% |
| !!! | AAATTTTGTTGATAATTTGC+AGG | - | chr3.4:43668983-43669002 | MS.gene22094:intron | 20.0% |
| !!! | AACTATGACTTTTTTTTTGA+AGG | + | chr3.4:43668242-43668261 | None:intergenic | 20.0% |
| !!! | ACAAGACTTGATTATTTTTA+AGG | + | chr3.4:43667881-43667900 | None:intergenic | 20.0% |
| !!! | AGAAAGATTATCTATCATTT+TGG | + | chr3.4:43666880-43666899 | None:intergenic | 20.0% |
| !!! | CAAGACTTGATTATTTTTAA+GGG | + | chr3.4:43667880-43667899 | None:intergenic | 20.0% |
| !!! | CTGAACCATTAATTTAAAAT+TGG | + | chr3.4:43668832-43668851 | None:intergenic | 20.0% |
| !!! | GAGTTTTACATATTAAATCA+AGG | - | chr3.4:43669557-43669576 | MS.gene22094:intron | 20.0% |
| !!! | GTAGTTTTTTGGTTTTATTT+CGG | - | chr3.4:43666497-43666516 | MS.gene22094:intron | 20.0% |
| !!! | GTTTTACATATTAAATCAAG+GGG | - | chr3.4:43669559-43669578 | MS.gene22094:intron | 20.0% |
| !!! | TTTTACATATTAAATCAAGG+GGG | - | chr3.4:43669560-43669579 | MS.gene22094:intron | 20.0% |
| ! | AAAAAAGAGTAGAGTCTATT+CGG | + | chr3.4:43669629-43669648 | None:intergenic | 25.0% |
| ! | AAAGTTTGTAATAGCTAGTT+TGG | - | chr3.4:43667971-43667990 | MS.gene22094:intron | 25.0% |
| ! | AACAATATGACAATCATTCA+AGG | - | chr3.4:43667824-43667843 | MS.gene22094:intron | 25.0% |
| ! | ACTTTACTGTATAGAAAAGA+CGG | - | chr3.4:43668732-43668751 | MS.gene22094:CDS | 25.0% |
| ! | AGAAATAAAATCTAACAAGG+AGG | + | chr3.4:43668266-43668285 | None:intergenic | 25.0% |
| ! | ATAAAATCTACTAAGTTAGG+TGG | + | chr3.4:43666350-43666369 | None:intergenic | 25.0% |
| ! | ATAAATGAGAATAAGGAAAC+TGG | + | chr3.4:43666927-43666946 | None:intergenic | 25.0% |
| ! | ATAGTACATGTTAACTTTGA+TGG | - | chr3.4:43669430-43669449 | MS.gene22094:intron | 25.0% |
| ! | ATGAGAAACAATGATTGATA+AGG | + | chr3.4:43666568-43666587 | None:intergenic | 25.0% |
| ! | ATTAACAACTATATTTGGCT+CGG | + | chr3.4:43669691-43669710 | None:intergenic | 25.0% |
| ! | GAGATATTCAGAATCTAAAT+AGG | - | chr3.4:43667371-43667390 | MS.gene22094:intron | 25.0% |
| ! | GGAATAAAATCTACTAAGTT+AGG | + | chr3.4:43666353-43666372 | None:intergenic | 25.0% |
| ! | GGTCGAAATATATTCATATA+GGG | + | chr3.4:43668577-43668596 | None:intergenic | 25.0% |
| ! | TCTGCATTAACAACTATATT+TGG | + | chr3.4:43669696-43669715 | None:intergenic | 25.0% |
| ! | TGAAGGATTCTTCTTTATTA+GGG | + | chr3.4:43666312-43666331 | None:intergenic | 25.0% |
| ! | TGTGATAGTTAAACTTAATC+GGG | + | chr3.4:43668471-43668490 | None:intergenic | 25.0% |
| ! | TTGAAGGATTCTTCTTTATT+AGG | + | chr3.4:43666313-43666332 | None:intergenic | 25.0% |
| !! | AGCTTTTTATATTTGCAGTT+GGG | - | chr3.4:43668087-43668106 | MS.gene22094:intron | 25.0% |
| !! | CTTTTCATGAAAACTACTTT+AGG | - | chr3.4:43669509-43669528 | MS.gene22094:intron | 25.0% |
| !! | TAGCTTTTTATATTTGCAGT+TGG | - | chr3.4:43668086-43668105 | MS.gene22094:intron | 25.0% |
| !!! | GATTAGCCTTAAATTTCTTT+GGG | - | chr3.4:43668062-43668081 | MS.gene22094:intron | 25.0% |
| !!! | TATGACTTTTTTTTTGAAGG+AGG | + | chr3.4:43668239-43668258 | None:intergenic | 25.0% |
| !!! | TGATTAGCCTTAAATTTCTT+TGG | - | chr3.4:43668061-43668080 | MS.gene22094:intron | 25.0% |
| AAAGAACTAAAGAATCTCGA+GGG | - | chr3.4:43667518-43667537 | MS.gene22094:CDS | 30.0% | |
| AAGAATCATCCAAATTGAGA+AGG | - | chr3.4:43667341-43667360 | MS.gene22094:intron | 30.0% | |
| AGAAAAGGAACGAAAAATAC+TGG | + | chr3.4:43666669-43666688 | None:intergenic | 30.0% | |
| AGCTAACCCAAAGAAATTTA+AGG | + | chr3.4:43668071-43668090 | None:intergenic | 30.0% | |
| AGTCTTTGAATGTATCTAAC+AGG | + | chr3.4:43668955-43668974 | None:intergenic | 30.0% | |
| ATATGAATGCTTACACAAGT+TGG | + | chr3.4:43669358-43669377 | None:intergenic | 30.0% | |
| ATCCAAATATGCTTCTAATG+GGG | + | chr3.4:43666390-43666409 | None:intergenic | 30.0% | |
| ATCTGAGTTAGATTGGATAA+AGG | - | chr3.4:43666285-43666304 | MS.gene22094:intron | 30.0% | |
| ATGATGAGATTTATCATCCA+AGG | - | chr3.4:43667722-43667741 | MS.gene22094:intron | 30.0% | |
| ATGGCAAGTATTAAATCAAG+GGG | - | chr3.4:43669449-43669468 | MS.gene22094:intron | 30.0% | |
| ATGTCTCGAAGCTTATTAAT+CGG | + | chr3.4:43666413-43666432 | None:intergenic | 30.0% | |
| ATTCAGAATCTAAATAGGTC+AGG | - | chr3.4:43667376-43667395 | MS.gene22094:intron | 30.0% | |
| CCATATAATTATCATCCACA+AGG | - | chr3.4:43667276-43667295 | MS.gene22094:intron | 30.0% | |
| CCTTGTGGATGATAATTATA+TGG | + | chr3.4:43667279-43667298 | None:intergenic | 30.0% | |
| CGAGATTATTGAAGATGATT+TGG | + | chr3.4:43666255-43666274 | None:intergenic | 30.0% | |
| CTTGCTGGTAAAACTAATAT+TGG | + | chr3.4:43667324-43667343 | None:intergenic | 30.0% | |
| GAGAAATCACATTTATATGC+AGG | - | chr3.4:43669094-43669113 | MS.gene22094:intron | 30.0% | |
| GATCCAAATATGCTTCTAAT+GGG | + | chr3.4:43666391-43666410 | None:intergenic | 30.0% | |
| GATGGCAAGTATTAAATCAA+GGG | - | chr3.4:43669448-43669467 | MS.gene22094:intron | 30.0% | |
| GATTTACGGGAAAGAAATTT+CGG | + | chr3.4:43669286-43669305 | None:intergenic | 30.0% | |
| GGGTCGAAATATATTCATAT+AGG | + | chr3.4:43668578-43668597 | None:intergenic | 30.0% | |
| TAACAATTATCTACGAGCTA+AGG | - | chr3.4:43669025-43669044 | MS.gene22094:intron | 30.0% | |
| TGATGAGATTTATCATCCAA+GGG | - | chr3.4:43667723-43667742 | MS.gene22094:intron | 30.0% | |
| TGATGGCAAGTATTAAATCA+AGG | - | chr3.4:43669447-43669466 | MS.gene22094:intron | 30.0% | |
| TTAAACGTTGTAGAAGATCT+TGG | + | chr3.4:43668913-43668932 | None:intergenic | 30.0% | |
| TTAATGCAGAAGTTGTGTAT+CGG | - | chr3.4:43669706-43669725 | MS.gene22094:CDS | 30.0% | |
| TTATCCAATCTAACTCAGAT+TGG | + | chr3.4:43666285-43666304 | None:intergenic | 30.0% | |
| TTTGTTCTGATTCTGCATAA+TGG | - | chr3.4:43669595-43669614 | MS.gene22094:intron | 30.0% | |
| ! | AAAAAGAGTTGTTTGAGACT+CGG | - | chr3.4:43666210-43666229 | MS.gene22094:intron | 30.0% |
| ! | AAATGCAGCTAATTTTTGCT+TGG | + | chr3.4:43667013-43667032 | None:intergenic | 30.0% |
| !! | TATTGAATTGGTAGTGTTCT+AGG | - | chr3.4:43666472-43666491 | MS.gene22094:intron | 30.0% |
| !!! | TGTTCTAGGTAGTAGTTTTT+TGG | - | chr3.4:43666486-43666505 | MS.gene22094:intron | 30.0% |
| AAACTCAGGAAATTCTTCGT+AGG | + | chr3.4:43669543-43669562 | None:intergenic | 35.0% | |
| AAGCAGAGTTAGATCTAGAA+AGG | - | chr3.4:43667559-43667578 | MS.gene22094:intron | 35.0% | |
| ACAAATCTATTGTCTACCCT+TGG | + | chr3.4:43667742-43667761 | None:intergenic | 35.0% | |
| ACGATGATGATAAAAAGCTG+TGG | - | chr3.4:43669155-43669174 | MS.gene22094:intron | 35.0% | |
| AGAACCAATCTGAGTTAGAT+TGG | - | chr3.4:43666278-43666297 | MS.gene22094:intron | 35.0% | |
| ATAAGCTTCGAGACATTCTA+AGG | - | chr3.4:43666417-43666436 | MS.gene22094:intron | 35.0% | |
| ATATGCTTGTGATGAAGGTA+AGG | + | chr3.4:43669261-43669280 | None:intergenic | 35.0% | |
| ATCTGATCCAAGCAGATTTA+CGG | + | chr3.4:43669300-43669319 | None:intergenic | 35.0% | |
| CAAAGAACTAAAGAATCTCG+AGG | - | chr3.4:43667517-43667536 | MS.gene22094:CDS | 35.0% | |
| CCAAATATGTAACTGTGTCA+CGG | + | chr3.4:43668804-43668823 | None:intergenic | 35.0% | |
| GATGATAAAAAGCTGTGGAA+TGG | - | chr3.4:43669160-43669179 | MS.gene22094:intron | 35.0% | |
| GCAAAATCTTCTTCATTGAG+GGG | + | chr3.4:43666145-43666164 | None:intergenic | 35.0% | |
| GGATCCAAATATGCTTCTAA+TGG | + | chr3.4:43666392-43666411 | None:intergenic | 35.0% | |
| GGCAAAATCTTCTTCATTGA+GGG | + | chr3.4:43666146-43666165 | None:intergenic | 35.0% | |
| GGTAAGATCTTCTTCATTGA+AGG | + | chr3.4:43666329-43666348 | None:intergenic | 35.0% | |
| GTGTTAGAGCAACTATTGAA+AGG | - | chr3.4:43667073-43667092 | MS.gene22094:intron | 35.0% | |
| TCAATTTGGATGATTCTTGC+TGG | + | chr3.4:43667339-43667358 | None:intergenic | 35.0% | |
| TGATCACACATTGTTTGATC+TGG | + | chr3.4:43669236-43669255 | None:intergenic | 35.0% | |
| TGGCAAAATCTTCTTCATTG+AGG | + | chr3.4:43666147-43666166 | None:intergenic | 35.0% | |
| TGTGTATCGGATTAAACTTC+TGG | - | chr3.4:43669719-43669738 | MS.gene22094:CDS | 35.0% | |
| TGTGTCTTTATCTCGATTCA+GGG | - | chr3.4:43666700-43666719 | MS.gene22094:intron | 35.0% | |
| TTCTAATGGGGAGATTTGAA+AGG | + | chr3.4:43666378-43666397 | None:intergenic | 35.0% | |
| TTGTGTCTTTATCTCGATTC+AGG | - | chr3.4:43666699-43666718 | MS.gene22094:intron | 35.0% | |
| ! | CTGTATAGAAAAGACGGATT+TGG | - | chr3.4:43668738-43668757 | MS.gene22094:CDS | 35.0% |
| ! | TTTCAGATAAGGCATCTACT+TGG | + | chr3.4:43666167-43666186 | None:intergenic | 35.0% |
| !!! | GACTTTTTTTTTGAAGGAGG+AGG | + | chr3.4:43668236-43668255 | None:intergenic | 35.0% |
| AAAGAATCTCGAGGGTAGAT+TGG | - | chr3.4:43667526-43667545 | MS.gene22094:CDS | 40.0% | |
| AATGGGGAGATTTGAAAGGA+GGG | + | chr3.4:43666374-43666393 | None:intergenic | 40.0% | |
| AGATACAGATTCTGCGTTAG+TGG | + | chr3.4:43667121-43667140 | None:intergenic | 40.0% | |
| ATGTGGAGTTCATGCAAAAG+CGG | - | chr3.4:43668336-43668355 | MS.gene22094:CDS | 40.0% | |
| ATTTCTTGTGCGTTGGATTG+GGG | - | chr3.4:43666724-43666743 | MS.gene22094:intron | 40.0% | |
| CACAAACACTACGCTAGAAA+AGG | + | chr3.4:43666684-43666703 | None:intergenic | 40.0% | |
| CATTTCTTGTGCGTTGGATT+GGG | - | chr3.4:43666723-43666742 | MS.gene22094:intron | 40.0% | |
| CCGTGACACAGTTACATATT+TGG | - | chr3.4:43668801-43668820 | MS.gene22094:intron | 40.0% | |
| GTTCTGATTCTGCATAATGG+TGG | - | chr3.4:43669598-43669617 | MS.gene22094:intron | 40.0% | |
| TAATGGGGAGATTTGAAAGG+AGG | + | chr3.4:43666375-43666394 | None:intergenic | 40.0% | |
| TCGAATCTGCCTTCTCAATT+TGG | + | chr3.4:43667353-43667372 | None:intergenic | 40.0% | |
| TCTGATCCAAGCAGATTTAC+GGG | + | chr3.4:43669299-43669318 | None:intergenic | 40.0% | |
| TTCTTTCCCGTAAATCTGCT+TGG | - | chr3.4:43669290-43669309 | MS.gene22094:intron | 40.0% | |
| ! | CTCCCCATTAGAAGCATATT+TGG | - | chr3.4:43666385-43666404 | MS.gene22094:intron | 40.0% |
| ! | TGTATCTGAAGCTAATACCC+AGG | - | chr3.4:43667134-43667153 | MS.gene22094:intron | 40.0% |
| ! | TTTTTCTGCAGACACATCCT+TGG | - | chr3.4:43667470-43667489 | MS.gene22094:intron | 40.0% |
| !! | CAACTATATTTGGCTCGGAA+AGG | + | chr3.4:43669686-43669705 | None:intergenic | 40.0% |
| ACGGATCTTTAACCACGTCA+CGG | + | chr3.4:43668785-43668804 | None:intergenic | 45.0% | |
| ACGTCACGGAGTTACTTGAT+AGG | + | chr3.4:43668771-43668790 | None:intergenic | 45.0% | |
| CAAATCAGAGCTAACCCAAC+TGG | + | chr3.4:43668146-43668165 | None:intergenic | 45.0% | |
| CACGGAGTTACTTGATAGGA+GGG | + | chr3.4:43668767-43668786 | None:intergenic | 45.0% | |
| CGGTCATATGCTTGTGATGA+AGG | + | chr3.4:43669266-43669285 | None:intergenic | 45.0% | |
| GCATTTCTTGTGCGTTGGAT+TGG | - | chr3.4:43666722-43666741 | MS.gene22094:intron | 45.0% | |
| GTGTTAGTGTGTCAACCTTG+TGG | + | chr3.4:43667294-43667313 | None:intergenic | 45.0% | |
| TATCAAGTAACTCCGTGACG+TGG | - | chr3.4:43668770-43668789 | MS.gene22094:CDS | 45.0% | |
| TCACGGAGTTACTTGATAGG+AGG | + | chr3.4:43668768-43668787 | None:intergenic | 45.0% | |
| TGTGGAGTTCATGCAAAAGC+GGG | - | chr3.4:43668337-43668356 | MS.gene22094:CDS | 45.0% | |
| ! | TGAGACGTTGTTTGCTGATG+TGG | - | chr3.4:43668319-43668338 | MS.gene22094:CDS | 45.0% |
| !! | CAGTTGGGTTAGCTCTGATT+TGG | - | chr3.4:43668144-43668163 | MS.gene22094:intron | 45.0% |
| !! | ACAAATAAATTATAATTAAT+TGG | + | chr3.4:43668042-43668061 | None:intergenic | 5.0% |
| CACATCCTTGGTGAAGCTCT+AGG | - | chr3.4:43667482-43667501 | MS.gene22094:intron | 50.0% | |
| CAGCAAACAACGTCTCATGC+TGG | + | chr3.4:43668316-43668335 | None:intergenic | 50.0% | |
| CTCGAGGGTAGATTGGAGAA+AGG | - | chr3.4:43667533-43667552 | MS.gene22094:intron | 50.0% | |
| GAGATCCTAGAGCTTCACCA+AGG | + | chr3.4:43667490-43667509 | None:intergenic | 50.0% | |
| ! | ACACAAGTTGGAGCGCAGTT+TGG | + | chr3.4:43669346-43669365 | None:intergenic | 50.0% |
| ! | TCAGGGCATTTCTTGTGCGT+TGG | - | chr3.4:43666717-43666736 | MS.gene22094:intron | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 43666122 | 43669746 | 43666122 | ID=MS.gene22094 |
| chr3.4 | mRNA | 43666122 | 43669746 | 43666122 | ID=MS.gene22094.t1;Parent=MS.gene22094 |
| chr3.4 | exon | 43669701 | 43669746 | 43669701 | ID=MS.gene22094.t1.exon1;Parent=MS.gene22094.t1 |
| chr3.4 | CDS | 43669701 | 43669746 | 43669701 | ID=cds.MS.gene22094.t1;Parent=MS.gene22094.t1 |
| chr3.4 | exon | 43669123 | 43669147 | 43669123 | ID=MS.gene22094.t1.exon2;Parent=MS.gene22094.t1 |
| chr3.4 | CDS | 43669123 | 43669147 | 43669123 | ID=cds.MS.gene22094.t1;Parent=MS.gene22094.t1 |
| chr3.4 | exon | 43668713 | 43668794 | 43668713 | ID=MS.gene22094.t1.exon3;Parent=MS.gene22094.t1 |
| chr3.4 | CDS | 43668713 | 43668794 | 43668713 | ID=cds.MS.gene22094.t1;Parent=MS.gene22094.t1 |
| chr3.4 | exon | 43668476 | 43668537 | 43668476 | ID=MS.gene22094.t1.exon4;Parent=MS.gene22094.t1 |
| chr3.4 | CDS | 43668476 | 43668537 | 43668476 | ID=cds.MS.gene22094.t1;Parent=MS.gene22094.t1 |
| chr3.4 | exon | 43668288 | 43668387 | 43668288 | ID=MS.gene22094.t1.exon5;Parent=MS.gene22094.t1 |
| chr3.4 | CDS | 43668288 | 43668387 | 43668288 | ID=cds.MS.gene22094.t1;Parent=MS.gene22094.t1 |
| chr3.4 | exon | 43667510 | 43667551 | 43667510 | ID=MS.gene22094.t1.exon6;Parent=MS.gene22094.t1 |
| chr3.4 | CDS | 43667510 | 43667551 | 43667510 | ID=cds.MS.gene22094.t1;Parent=MS.gene22094.t1 |
| chr3.4 | exon | 43666822 | 43666863 | 43666822 | ID=MS.gene22094.t1.exon7;Parent=MS.gene22094.t1 |
| chr3.4 | CDS | 43666822 | 43666863 | 43666822 | ID=cds.MS.gene22094.t1;Parent=MS.gene22094.t1 |
| chr3.4 | exon | 43666505 | 43666680 | 43666505 | ID=MS.gene22094.t1.exon8;Parent=MS.gene22094.t1 |
| chr3.4 | CDS | 43666505 | 43666680 | 43666505 | ID=cds.MS.gene22094.t1;Parent=MS.gene22094.t1 |
| chr3.4 | exon | 43666122 | 43666197 | 43666122 | ID=MS.gene22094.t1.exon9;Parent=MS.gene22094.t1 |
| chr3.4 | CDS | 43666122 | 43666197 | 43666122 | ID=cds.MS.gene22094.t1;Parent=MS.gene22094.t1 |
| Gene Sequence |
| Protein sequence |
