Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene001174.t1 | XP_013464137.1 | 99.5 | 434 | 2 | 0 | 15 | 448 | 39 | 472 | 5.80E-254 | 886.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene001174.t1 | O80433 | 76.3 | 434 | 102 | 1 | 15 | 448 | 40 | 472 | 6.3e-201 | 701.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene001174.t1 | A0A072V8L1 | 99.5 | 434 | 2 | 0 | 15 | 448 | 39 | 472 | 4.2e-254 | 886.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene81115 | MS.gene001174 | PPI |
| MS.gene043837 | MS.gene001174 | PPI |
| MS.gene77179 | MS.gene001174 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene001174.t1 | MTR_2g061630 | 98.633 | 439 | 6 | 0 | 10 | 448 | 34 | 472 | 0.0 | 894 |
| MS.gene001174.t1 | MTR_2g061630 | 97.785 | 316 | 7 | 0 | 10 | 325 | 34 | 349 | 0.0 | 640 |
| MS.gene001174.t1 | MTR_5g091930 | 27.390 | 387 | 237 | 16 | 66 | 435 | 109 | 468 | 9.01e-28 | 115 |
| MS.gene001174.t1 | MTR_3g048920 | 26.753 | 385 | 242 | 14 | 66 | 435 | 115 | 474 | 3.40e-26 | 111 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene001174.t1 | AT2G44350 | 73.068 | 427 | 114 | 1 | 15 | 441 | 40 | 465 | 0.0 | 669 |
| MS.gene001174.t1 | AT2G44350 | 73.068 | 427 | 114 | 1 | 15 | 441 | 40 | 465 | 0.0 | 669 |
| MS.gene001174.t1 | AT2G44350 | 73.068 | 427 | 114 | 1 | 15 | 441 | 39 | 464 | 0.0 | 668 |
| MS.gene001174.t1 | AT2G44350 | 73.068 | 427 | 114 | 1 | 15 | 441 | 39 | 464 | 0.0 | 668 |
| MS.gene001174.t1 | AT3G60100 | 73.782 | 431 | 111 | 2 | 15 | 444 | 36 | 465 | 0.0 | 665 |
| MS.gene001174.t1 | AT3G60100 | 73.086 | 431 | 109 | 3 | 15 | 444 | 36 | 460 | 0.0 | 652 |
| MS.gene001174.t1 | AT3G60100 | 74.870 | 386 | 95 | 2 | 15 | 399 | 36 | 420 | 0.0 | 603 |
| MS.gene001174.t1 | AT3G58750 | 28.095 | 420 | 249 | 19 | 37 | 431 | 71 | 462 | 8.73e-29 | 119 |
| MS.gene001174.t1 | AT2G42790 | 27.907 | 387 | 235 | 17 | 66 | 435 | 105 | 464 | 2.85e-28 | 117 |
| MS.gene001174.t1 | AT3G58740 | 24.277 | 346 | 224 | 13 | 66 | 397 | 107 | 428 | 9.68e-20 | 92.0 |
Find 99 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAATCCACTTGCTCTTTATT+TGG | 0.159556 | 2.1:-33887042 | None:intergenic |
| CATACCATTGGATGATTCTT+TGG | 0.185625 | 2.1:+33889485 | MS.gene001174:CDS |
| CTCATAAACTCAAGCATTTC+CGG | 0.200318 | 2.1:-33889549 | None:intergenic |
| TTGGATGATTCTTTGGATTA+TGG | 0.241055 | 2.1:+33889492 | MS.gene001174:CDS |
| ATTGAAATATTTACCTCATC+TGG | 0.266300 | 2.1:-33886556 | None:intergenic |
| AATTGTTCTGTACTTATGTT+TGG | 0.284939 | 2.1:-33890492 | None:intergenic |
| TTGCAGGTTGTGCCTGGATA+TGG | 0.296466 | 2.1:+33891358 | MS.gene001174:intron |
| AGAAATATAGTTAAGGAGTT+TGG | 0.298747 | 2.1:+33890465 | MS.gene001174:CDS |
| GGAACTAGTTCCAGAGTATC+AGG | 0.337703 | 2.1:+33885621 | MS.gene001174:CDS |
| AGCTATTATACCGTTCTCTT+TGG | 0.356864 | 2.1:+33892278 | MS.gene001174:intron |
| AGAGCATGGAAGTGTTGAAT+TGG | 0.358355 | 2.1:+33886329 | MS.gene001174:CDS |
| GCTGTGTGGGTATAGGTATT+GGG | 0.360592 | 2.1:+33889241 | MS.gene001174:intron |
| AATTTAATTGCTCGTTTGCC+TGG | 0.363065 | 2.1:+33889287 | MS.gene001174:CDS |
| GACTGTCAGAAAACACTTCC+AGG | 0.363445 | 2.1:+33886745 | MS.gene001174:CDS |
| ACTGGAGAAACTTGAGAAAT+TGG | 0.367503 | 2.1:+33892470 | MS.gene001174:CDS |
| CCTCCTATTCTGACCAAGTT+AGG | 0.371594 | 2.1:+33891597 | MS.gene001174:CDS |
| GCAAACTATGCTCACATGTT+AGG | 0.376742 | 2.1:+33889516 | MS.gene001174:CDS |
| TCCCTCTGGCAAGTGTATCT+TGG | 0.398610 | 2.1:-33891406 | None:intergenic |
| TGTCAAAAGAAGCCACAATA+TGG | 0.404498 | 2.1:-33886800 | None:intergenic |
| GCATTTGCAGCTGCTCTGAA+TGG | 0.405218 | 2.1:+33890023 | MS.gene001174:CDS |
| TTGATATGGGACCGGGCTCT+TGG | 0.411393 | 2.1:+33892417 | MS.gene001174:CDS |
| ACTGCATGGTTTAGCCAATC+AGG | 0.415933 | 2.1:+33890058 | MS.gene001174:CDS |
| AGCTGGAAAAGTGGATCATT+AGG | 0.420903 | 2.1:-33891448 | None:intergenic |
| TGACATTACCTTGCCTAACT+TGG | 0.421588 | 2.1:-33891610 | None:intergenic |
| TGCAGACAAACCTGATACTC+TGG | 0.421644 | 2.1:-33885631 | None:intergenic |
| GGCTGTATGTTTCTATCCAC+AGG | 0.423756 | 2.1:+33889571 | MS.gene001174:CDS |
| TACTGGTGTAATGGCCCTCC+AGG | 0.424587 | 2.1:+33887725 | MS.gene001174:CDS |
| GTCATTGGATGAGCAGAAAC+AGG | 0.436951 | 2.1:-33887693 | None:intergenic |
| CGGAAATGCTTGAGTTTATG+AGG | 0.437582 | 2.1:+33889550 | MS.gene001174:CDS |
| TTGGATTTGCAGGTTGTGCC+TGG | 0.452455 | 2.1:+33891352 | MS.gene001174:intron |
| CACAATATGGCCTCAGGCAA+AGG | 0.458721 | 2.1:-33886787 | None:intergenic |
| GAGCATGGAAGTGTTGAATT+GGG | 0.461632 | 2.1:+33886330 | MS.gene001174:CDS |
| ATTTGCAGAGTATGCTTACA+AGG | 0.466451 | 2.1:+33887656 | MS.gene001174:intron |
| AAATAACAAAATAACCTGAT+TGG | 0.471116 | 2.1:-33890072 | None:intergenic |
| GCTTCAATGCAAACTCCCTC+TGG | 0.472659 | 2.1:-33891420 | None:intergenic |
| GCAAGTGGATTCATTAGCTC+AGG | 0.473278 | 2.1:+33887053 | MS.gene001174:CDS |
| ACAATTCACTACTGGTGTAA+TGG | 0.476175 | 2.1:+33887716 | MS.gene001174:CDS |
| TAAATGTAAGCAGCAATTCC+AGG | 0.476938 | 2.1:-33889305 | None:intergenic |
| CCACTGTGAGCATCAACATT+AGG | 0.478544 | 2.1:-33892123 | None:intergenic |
| CATGTTAGGATTTGATGATC+CGG | 0.483789 | 2.1:+33889530 | MS.gene001174:CDS |
| CGAAGTCGTGCGAAAATCCC+AGG | 0.483821 | 2.1:+33887081 | MS.gene001174:CDS |
| TCTGATTAAAAGGTACTTGG+TGG | 0.484331 | 2.1:+33886487 | MS.gene001174:intron |
| TTTGGTGTCGCAAGGAGTAT+TGG | 0.484554 | 2.1:+33892296 | MS.gene001174:CDS |
| ATGGATCAGAAATATAGTTA+AGG | 0.495096 | 2.1:+33890458 | MS.gene001174:CDS |
| TAAAACTCTGAACAGTGGCC+AGG | 0.495286 | 2.1:+33890530 | MS.gene001174:CDS |
| GAGTATTGGAGTTGGCCCTC+AGG | 0.499686 | 2.1:+33892310 | MS.gene001174:CDS |
| CCAGTAGTGAATTGTGTCAT+TGG | 0.501524 | 2.1:-33887708 | None:intergenic |
| TGGTGGGGAGCCTTTGCCTG+AGG | 0.502216 | 2.1:+33886777 | MS.gene001174:CDS |
| GGCTAAACCATGCAGTGGGC+CGG | 0.503287 | 2.1:-33890051 | None:intergenic |
| AAGGTACTTGGTGGAATGAG+AGG | 0.504202 | 2.1:+33886496 | MS.gene001174:intron |
| GGTTTAGCCGGCCCACTGCA+TGG | 0.504218 | 2.1:+33890044 | MS.gene001174:CDS |
| TTCAAGCTATCCTCATAAGT+TGG | 0.509007 | 2.1:-33889266 | None:intergenic |
| TTGCCTAACTTGGTCAGAAT+AGG | 0.514733 | 2.1:-33891600 | None:intergenic |
| TTGAAATATTTACCTCATCT+GGG | 0.515259 | 2.1:-33886555 | None:intergenic |
| TCAGGCAAAGGCTCCCCACC+AGG | 0.518613 | 2.1:-33886775 | None:intergenic |
| GGAGTACTACTGAACTACTA+TGG | 0.523818 | 2.1:+33892144 | MS.gene001174:CDS |
| AGAAGCCACAATATGGCCTC+AGG | 0.528313 | 2.1:-33886793 | None:intergenic |
| GTATTGGGAGCCAACTTATG+AGG | 0.532378 | 2.1:+33889256 | MS.gene001174:CDS |
| CCAATGACACAATTCACTAC+TGG | 0.535441 | 2.1:+33887708 | MS.gene001174:CDS |
| CGAATTTACAAAGGCATACG+AGG | 0.536029 | 2.1:+33889144 | MS.gene001174:CDS |
| CCGTTCTCTTTGGTGTCGCA+AGG | 0.537309 | 2.1:+33892288 | MS.gene001174:CDS |
| CTCTTGGAATGCCACTTGAA+AGG | 0.537697 | 2.1:+33892433 | MS.gene001174:CDS |
| GATACCAAATAAAGAGCAAG+TGG | 0.542297 | 2.1:+33887038 | MS.gene001174:intron |
| CTTTGCCTGAGGCCATATTG+TGG | 0.543494 | 2.1:+33886788 | MS.gene001174:CDS |
| AAAACTCCATGTCCATATCC+AGG | 0.545465 | 2.1:-33891370 | None:intergenic |
| CAAGTGGCATTCCAAGAGCC+CGG | 0.548890 | 2.1:-33892428 | None:intergenic |
| GCAGCTGCAAATGCAAGATA+AGG | 0.554314 | 2.1:-33890014 | None:intergenic |
| CCTAACTTGGTCAGAATAGG+AGG | 0.560534 | 2.1:-33891597 | None:intergenic |
| GCTGCTCTGAATGGTTTAGC+CGG | 0.568292 | 2.1:+33890032 | MS.gene001174:CDS |
| TTGCTGCTTACATTTATCGA+CGG | 0.581460 | 2.1:+33889312 | MS.gene001174:CDS |
| TTTCAGGGAATTCGCTTTAG+GGG | 0.586113 | 2.1:+33886709 | MS.gene001174:intron |
| AAGAAGCTGAAGAAAGAGCA+TGG | 0.593745 | 2.1:+33886315 | MS.gene001174:CDS |
| TTACAAAGGCATACGAGGGT+GGG | 0.601148 | 2.1:+33889149 | MS.gene001174:CDS |
| TTTACAAAGGCATACGAGGG+TGG | 0.602923 | 2.1:+33889148 | MS.gene001174:CDS |
| GTCGCAAGGAGTATTGGAGT+TGG | 0.606634 | 2.1:+33892302 | MS.gene001174:CDS |
| TGAGCATCAACATTAGGCCA+TGG | 0.610028 | 2.1:-33892117 | None:intergenic |
| GAGAAACTTGAGAAATTGGT+CGG | 0.612925 | 2.1:+33892474 | MS.gene001174:CDS |
| TCCCCACCAGGAAAAGCACC+TGG | 0.616236 | 2.1:-33886763 | None:intergenic |
| TCCAAGATACACTTGCCAGA+GGG | 0.616781 | 2.1:+33891405 | MS.gene001174:CDS |
| TAATCCAAAGAATCATCCAA+TGG | 0.620771 | 2.1:-33889489 | None:intergenic |
| TATTCTGACCAAGTTAGGCA+AGG | 0.623130 | 2.1:+33891602 | MS.gene001174:CDS |
| ATGACAGCTTTAGTGTGGCT+AGG | 0.626895 | 2.1:+33886520 | MS.gene001174:CDS |
| GGTGGAGAGCGAATTTACAA+AGG | 0.630867 | 2.1:+33889135 | MS.gene001174:intron |
| CTCAGCTGTTGACCCAGATG+AGG | 0.633642 | 2.1:+33886543 | MS.gene001174:CDS |
| CCTTGCGACACCAAAGAGAA+CGG | 0.640152 | 2.1:-33892288 | None:intergenic |
| TGATTGGCTAAACCATGCAG+TGG | 0.651254 | 2.1:-33890056 | None:intergenic |
| AGGGTGGGATACATAAGTCA+AGG | 0.654340 | 2.1:+33889164 | MS.gene001174:CDS |
| GATTGGCTAAACCATGCAGT+GGG | 0.661247 | 2.1:-33890055 | None:intergenic |
| GTTGTGCCTGGATATGGACA+TGG | 0.672928 | 2.1:+33891364 | MS.gene001174:CDS |
| GAGGAATGACAGCTTTAGTG+TGG | 0.675279 | 2.1:+33886515 | MS.gene001174:CDS |
| ATGTGCAGTGATCATGAAGG+CGG | 0.675536 | 2.1:+33889721 | MS.gene001174:intron |
| ATCCAAGATACACTTGCCAG+AGG | 0.678943 | 2.1:+33891404 | MS.gene001174:CDS |
| AATCTGTTACTCAACCTGGA+GGG | 0.680688 | 2.1:-33887739 | None:intergenic |
| ATTCATAAAACTCTGAACAG+TGG | 0.683094 | 2.1:+33890525 | MS.gene001174:CDS |
| TGTTACAGGAAGTTCTACGA+TGG | 0.687651 | 2.1:+33890439 | MS.gene001174:intron |
| TTCATGTGCAGTGATCATGA+AGG | 0.695871 | 2.1:+33889718 | MS.gene001174:intron |
| GAACTACTATGGTCTAACTG+AGG | 0.714548 | 2.1:+33892155 | MS.gene001174:CDS |
| GAATTTACAAAGGCATACGA+GGG | 0.725539 | 2.1:+33889145 | MS.gene001174:CDS |
| CCTAATGTTGATGCTCACAG+TGG | 0.737956 | 2.1:+33892123 | MS.gene001174:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.1 | gene | 33885559 | 33892509 | 33885559 | ID=MS.gene001174 |
| chr2.1 | mRNA | 33885559 | 33892509 | 33885559 | ID=MS.gene001174.t1;Parent=MS.gene001174 |
| chr2.1 | exon | 33885559 | 33885642 | 33885559 | ID=MS.gene001174.t1.exon1;Parent=MS.gene001174.t1 |
| chr2.1 | CDS | 33885559 | 33885642 | 33885559 | ID=cds.MS.gene001174.t1;Parent=MS.gene001174.t1 |
| chr2.1 | exon | 33886306 | 33886371 | 33886306 | ID=MS.gene001174.t1.exon2;Parent=MS.gene001174.t1 |
| chr2.1 | CDS | 33886306 | 33886371 | 33886306 | ID=cds.MS.gene001174.t1;Parent=MS.gene001174.t1 |
| chr2.1 | exon | 33886499 | 33886564 | 33886499 | ID=MS.gene001174.t1.exon3;Parent=MS.gene001174.t1 |
| chr2.1 | CDS | 33886499 | 33886564 | 33886499 | ID=cds.MS.gene001174.t1;Parent=MS.gene001174.t1 |
| chr2.1 | exon | 33886715 | 33886828 | 33886715 | ID=MS.gene001174.t1.exon4;Parent=MS.gene001174.t1 |
| chr2.1 | CDS | 33886715 | 33886828 | 33886715 | ID=cds.MS.gene001174.t1;Parent=MS.gene001174.t1 |
| chr2.1 | exon | 33887039 | 33887102 | 33887039 | ID=MS.gene001174.t1.exon5;Parent=MS.gene001174.t1 |
| chr2.1 | CDS | 33887039 | 33887102 | 33887039 | ID=cds.MS.gene001174.t1;Parent=MS.gene001174.t1 |
| chr2.1 | exon | 33887664 | 33887746 | 33887664 | ID=MS.gene001174.t1.exon6;Parent=MS.gene001174.t1 |
| chr2.1 | CDS | 33887664 | 33887746 | 33887664 | ID=cds.MS.gene001174.t1;Parent=MS.gene001174.t1 |
| chr2.1 | exon | 33889136 | 33889185 | 33889136 | ID=MS.gene001174.t1.exon7;Parent=MS.gene001174.t1 |
| chr2.1 | CDS | 33889136 | 33889185 | 33889136 | ID=cds.MS.gene001174.t1;Parent=MS.gene001174.t1 |
| chr2.1 | exon | 33889256 | 33889333 | 33889256 | ID=MS.gene001174.t1.exon8;Parent=MS.gene001174.t1 |
| chr2.1 | CDS | 33889256 | 33889333 | 33889256 | ID=cds.MS.gene001174.t1;Parent=MS.gene001174.t1 |
| chr2.1 | exon | 33889464 | 33889592 | 33889464 | ID=MS.gene001174.t1.exon9;Parent=MS.gene001174.t1 |
| chr2.1 | CDS | 33889464 | 33889592 | 33889464 | ID=cds.MS.gene001174.t1;Parent=MS.gene001174.t1 |
| chr2.1 | exon | 33889729 | 33889771 | 33889729 | ID=MS.gene001174.t1.exon10;Parent=MS.gene001174.t1 |
| chr2.1 | CDS | 33889729 | 33889771 | 33889729 | ID=cds.MS.gene001174.t1;Parent=MS.gene001174.t1 |
| chr2.1 | exon | 33889993 | 33890079 | 33889993 | ID=MS.gene001174.t1.exon11;Parent=MS.gene001174.t1 |
| chr2.1 | CDS | 33889993 | 33890079 | 33889993 | ID=cds.MS.gene001174.t1;Parent=MS.gene001174.t1 |
| chr2.1 | exon | 33890447 | 33890551 | 33890447 | ID=MS.gene001174.t1.exon12;Parent=MS.gene001174.t1 |
| chr2.1 | CDS | 33890447 | 33890551 | 33890447 | ID=cds.MS.gene001174.t1;Parent=MS.gene001174.t1 |
| chr2.1 | exon | 33891364 | 33891471 | 33891364 | ID=MS.gene001174.t1.exon13;Parent=MS.gene001174.t1 |
| chr2.1 | CDS | 33891364 | 33891471 | 33891364 | ID=cds.MS.gene001174.t1;Parent=MS.gene001174.t1 |
| chr2.1 | exon | 33891573 | 33891623 | 33891573 | ID=MS.gene001174.t1.exon14;Parent=MS.gene001174.t1 |
| chr2.1 | CDS | 33891573 | 33891623 | 33891573 | ID=cds.MS.gene001174.t1;Parent=MS.gene001174.t1 |
| chr2.1 | exon | 33892108 | 33892181 | 33892108 | ID=MS.gene001174.t1.exon15;Parent=MS.gene001174.t1 |
| chr2.1 | CDS | 33892108 | 33892181 | 33892108 | ID=cds.MS.gene001174.t1;Parent=MS.gene001174.t1 |
| chr2.1 | exon | 33892280 | 33892331 | 33892280 | ID=MS.gene001174.t1.exon16;Parent=MS.gene001174.t1 |
| chr2.1 | CDS | 33892280 | 33892331 | 33892280 | ID=cds.MS.gene001174.t1;Parent=MS.gene001174.t1 |
| chr2.1 | exon | 33892417 | 33892509 | 33892417 | ID=MS.gene001174.t1.exon17;Parent=MS.gene001174.t1 |
| chr2.1 | CDS | 33892417 | 33892509 | 33892417 | ID=cds.MS.gene001174.t1;Parent=MS.gene001174.t1 |
| Gene Sequence |
| Protein sequence |