Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene043837.t1 | XP_013464137.1 | 99.5 | 434 | 2 | 0 | 5 | 438 | 39 | 472 | 7.40E-254 | 885.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene043837.t1 | O80433 | 76.3 | 434 | 102 | 1 | 5 | 438 | 40 | 472 | 8.1e-201 | 701.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene043837.t1 | A0A072V8L1 | 99.5 | 434 | 2 | 0 | 5 | 438 | 39 | 472 | 5.3e-254 | 885.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene043837 | MS.gene81115 | PPI |
| MS.gene77179 | MS.gene043837 | PPI |
| MS.gene043837 | MS.gene001174 | PPI |
| MS.gene81115 | MS.gene043837 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene043837.t1 | MTR_2g061630 | 99.539 | 434 | 2 | 0 | 5 | 438 | 39 | 472 | 0.0 | 893 |
| MS.gene043837.t1 | MTR_2g061630 | 99.035 | 311 | 3 | 0 | 5 | 315 | 39 | 349 | 0.0 | 640 |
| MS.gene043837.t1 | MTR_5g091930 | 27.390 | 387 | 237 | 16 | 56 | 425 | 109 | 468 | 7.36e-28 | 115 |
| MS.gene043837.t1 | MTR_3g048920 | 26.753 | 385 | 242 | 14 | 56 | 425 | 115 | 474 | 3.90e-26 | 110 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene043837.t1 | AT2G44350 | 73.068 | 427 | 114 | 1 | 5 | 431 | 40 | 465 | 0.0 | 669 |
| MS.gene043837.t1 | AT2G44350 | 73.068 | 427 | 114 | 1 | 5 | 431 | 40 | 465 | 0.0 | 669 |
| MS.gene043837.t1 | AT2G44350 | 73.068 | 427 | 114 | 1 | 5 | 431 | 39 | 464 | 0.0 | 669 |
| MS.gene043837.t1 | AT2G44350 | 73.068 | 427 | 114 | 1 | 5 | 431 | 39 | 464 | 0.0 | 669 |
| MS.gene043837.t1 | AT3G60100 | 73.782 | 431 | 111 | 2 | 5 | 434 | 36 | 465 | 0.0 | 665 |
| MS.gene043837.t1 | AT3G60100 | 73.086 | 431 | 109 | 3 | 5 | 434 | 36 | 460 | 0.0 | 652 |
| MS.gene043837.t1 | AT3G60100 | 74.870 | 386 | 95 | 2 | 5 | 389 | 36 | 420 | 0.0 | 604 |
| MS.gene043837.t1 | AT3G58750 | 28.307 | 378 | 230 | 16 | 58 | 421 | 112 | 462 | 9.17e-29 | 118 |
| MS.gene043837.t1 | AT2G42790 | 27.907 | 387 | 235 | 17 | 56 | 425 | 105 | 464 | 2.53e-28 | 117 |
| MS.gene043837.t1 | AT3G58740 | 24.277 | 346 | 224 | 13 | 56 | 387 | 107 | 428 | 9.65e-20 | 91.7 |
Find 100 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAATCCACTTGCTCTTTATT+TGG | 0.159556 | 2.2:-27470059 | None:intergenic |
| CATACCATTGGATGATTCTT+TGG | 0.185625 | 2.2:+27472510 | MS.gene043837:CDS |
| CTCATAAACTCAAGCATTTC+CGG | 0.200318 | 2.2:-27472574 | None:intergenic |
| TTGGATGATTCTTTGGATTA+TGG | 0.241055 | 2.2:+27472517 | MS.gene043837:CDS |
| ATTGAAATATTTACCTCATC+TGG | 0.266300 | 2.2:-27469569 | None:intergenic |
| AATTGTTCTGTACTTATGTT+TGG | 0.284939 | 2.2:-27473517 | None:intergenic |
| AGAAATATAGTTAAGGAGTT+TGG | 0.298747 | 2.2:+27473490 | MS.gene043837:CDS |
| GGAACTAGTTCCAGAGTATC+AGG | 0.337703 | 2.2:+27468634 | MS.gene043837:CDS |
| TTGGATTTGCAGGTTGTGCC+TGG | 0.345726 | 2.2:+27474380 | MS.gene043837:intron |
| AGCTATTATACCGTTCTCTT+TGG | 0.356864 | 2.2:+27475476 | MS.gene043837:intron |
| AGAGCATGGAAGTGTTGAAT+TGG | 0.358355 | 2.2:+27469342 | MS.gene043837:CDS |
| GCTGTGTGGGTATAGGTATT+GGG | 0.360592 | 2.2:+27472266 | MS.gene043837:intron |
| AATTTAATTGCTCGTTTGCC+TGG | 0.363065 | 2.2:+27472312 | MS.gene043837:CDS |
| GACTGTCAGAAAACACTTCC+AGG | 0.363445 | 2.2:+27469762 | MS.gene043837:CDS |
| ACTGGAGAAACTTGAGAAAT+TGG | 0.367503 | 2.2:+27475668 | MS.gene043837:CDS |
| CCTCCTATTCTGACCAAGTT+AGG | 0.371594 | 2.2:+27474625 | MS.gene043837:CDS |
| GCAAACTATGCTCACATGTT+AGG | 0.376742 | 2.2:+27472541 | MS.gene043837:CDS |
| TCCCTCTGGCAAGTGTATCT+TGG | 0.398610 | 2.2:-27474434 | None:intergenic |
| TGTCAAAAGAAGCCACAATA+TGG | 0.404498 | 2.2:-27469817 | None:intergenic |
| GCATTTGCAGCTGCTCTGAA+TGG | 0.405218 | 2.2:+27473048 | MS.gene043837:CDS |
| TTGATATGGGACCGGGCTCT+TGG | 0.411393 | 2.2:+27475615 | MS.gene043837:CDS |
| ACTGCATGGTTTAGCCAATC+AGG | 0.415933 | 2.2:+27473083 | MS.gene043837:CDS |
| TTGCAGGTTGTGCCTGGGTA+TGG | 0.418661 | 2.2:+27474386 | MS.gene043837:intron |
| AGCTGGAAAAGTGGATCATT+AGG | 0.420903 | 2.2:-27474476 | None:intergenic |
| TGACATTACCTTGCCTAACT+TGG | 0.421588 | 2.2:-27474638 | None:intergenic |
| TGCAGACAAACCTGATACTC+TGG | 0.421644 | 2.2:-27468644 | None:intergenic |
| GGCTGTATGTTTCTATCCAC+AGG | 0.423756 | 2.2:+27472596 | MS.gene043837:CDS |
| TACTGGTGTAATGGCCCTCC+AGG | 0.424587 | 2.2:+27470742 | MS.gene043837:CDS |
| GTCATTGGATGAGCAGAAAC+AGG | 0.436951 | 2.2:-27470710 | None:intergenic |
| CGGAAATGCTTGAGTTTATG+AGG | 0.437582 | 2.2:+27472575 | MS.gene043837:CDS |
| CACAATATGGCCTCAGGCAA+AGG | 0.458721 | 2.2:-27469804 | None:intergenic |
| GAGCATGGAAGTGTTGAATT+GGG | 0.461632 | 2.2:+27469343 | MS.gene043837:CDS |
| ATTTGCAGAGTATGCTTACA+AGG | 0.466451 | 2.2:+27470673 | MS.gene043837:intron |
| AAATAACAAAATAACCTGAT+TGG | 0.471116 | 2.2:-27473097 | None:intergenic |
| GCTTCAATGCAAACTCCCTC+TGG | 0.472659 | 2.2:-27474448 | None:intergenic |
| GCAAGTGGATTCATTAGCTC+AGG | 0.473278 | 2.2:+27470070 | MS.gene043837:CDS |
| ACAATTCACTACTGGTGTAA+TGG | 0.476175 | 2.2:+27470733 | MS.gene043837:CDS |
| TAAATGTAAGCAGCAATTCC+AGG | 0.476938 | 2.2:-27472330 | None:intergenic |
| CCACTGTGAGCATCAACATT+AGG | 0.478544 | 2.2:-27475321 | None:intergenic |
| CATGTTAGGATTTGATGATC+CGG | 0.483789 | 2.2:+27472555 | MS.gene043837:CDS |
| CGAAGTCGTGCGAAAATCCC+AGG | 0.483821 | 2.2:+27470098 | MS.gene043837:CDS |
| TCTGATTAAAAGGTACTTGG+TGG | 0.484331 | 2.2:+27469500 | MS.gene043837:intron |
| TTTGGTGTCGCAAGGAGTAT+TGG | 0.484554 | 2.2:+27475494 | MS.gene043837:CDS |
| ATGGATCAGAAATATAGTTA+AGG | 0.495096 | 2.2:+27473483 | MS.gene043837:CDS |
| TAAAACTCTGAACAGTGGCC+AGG | 0.495286 | 2.2:+27473555 | MS.gene043837:CDS |
| GAGTATTGGAGTTGGCCCTC+AGG | 0.499686 | 2.2:+27475508 | MS.gene043837:CDS |
| TGGATTTGCAGGTTGTGCCT+GGG | 0.501210 | 2.2:+27474381 | MS.gene043837:intron |
| CCAGTAGTGAATTGTGTCAT+TGG | 0.501524 | 2.2:-27470725 | None:intergenic |
| TGGTGGGGAGCCTTTGCCTG+AGG | 0.502216 | 2.2:+27469794 | MS.gene043837:CDS |
| GGCTAAACCATGCAGTGGGC+CGG | 0.503287 | 2.2:-27473076 | None:intergenic |
| AAGGTACTTGGTGGAATGAG+AGG | 0.504202 | 2.2:+27469509 | MS.gene043837:intron |
| GGTTTAGCCGGCCCACTGCA+TGG | 0.504218 | 2.2:+27473069 | MS.gene043837:CDS |
| TTCAAGCTATCCTCATAAGT+TGG | 0.509007 | 2.2:-27472291 | None:intergenic |
| TTGCCTAACTTGGTCAGAAT+AGG | 0.514733 | 2.2:-27474628 | None:intergenic |
| TTGAAATATTTACCTCATCT+GGG | 0.515259 | 2.2:-27469568 | None:intergenic |
| TCAGGCAAAGGCTCCCCACC+AGG | 0.518613 | 2.2:-27469792 | None:intergenic |
| GGAGTACTACTGAACTACTA+TGG | 0.523818 | 2.2:+27475342 | MS.gene043837:CDS |
| AGAAGCCACAATATGGCCTC+AGG | 0.528313 | 2.2:-27469810 | None:intergenic |
| GTATTGGGAGCCAACTTATG+AGG | 0.532378 | 2.2:+27472281 | MS.gene043837:CDS |
| CCAATGACACAATTCACTAC+TGG | 0.535441 | 2.2:+27470725 | MS.gene043837:CDS |
| CGAATTTACAAAGGCATACG+AGG | 0.536029 | 2.2:+27472164 | MS.gene043837:CDS |
| CCGTTCTCTTTGGTGTCGCA+AGG | 0.537309 | 2.2:+27475486 | MS.gene043837:CDS |
| CTCTTGGAATGCCACTTGAA+AGG | 0.537697 | 2.2:+27475631 | MS.gene043837:CDS |
| GATACCAAATAAAGAGCAAG+TGG | 0.542297 | 2.2:+27470055 | MS.gene043837:intron |
| CTTTGCCTGAGGCCATATTG+TGG | 0.543494 | 2.2:+27469805 | MS.gene043837:CDS |
| CAAGTGGCATTCCAAGAGCC+CGG | 0.548890 | 2.2:-27475626 | None:intergenic |
| GCAGCTGCAAATGCAAGATA+AGG | 0.554314 | 2.2:-27473039 | None:intergenic |
| CCTAACTTGGTCAGAATAGG+AGG | 0.560534 | 2.2:-27474625 | None:intergenic |
| GCTGCTCTGAATGGTTTAGC+CGG | 0.568292 | 2.2:+27473057 | MS.gene043837:CDS |
| TTGCTGCTTACATTTATCGA+CGG | 0.581460 | 2.2:+27472337 | MS.gene043837:CDS |
| TTTCAGGGAATTCGCTTTAG+GGG | 0.586113 | 2.2:+27469726 | MS.gene043837:intron |
| GTTGTGCCTGGGTATGGACA+TGG | 0.589434 | 2.2:+27474392 | MS.gene043837:CDS |
| AAGAAGCTGAAGAAAGAGCA+TGG | 0.593745 | 2.2:+27469328 | MS.gene043837:CDS |
| TTACAAAGGCATACGAGGGT+GGG | 0.601148 | 2.2:+27472169 | MS.gene043837:CDS |
| TTTACAAAGGCATACGAGGG+TGG | 0.602923 | 2.2:+27472168 | MS.gene043837:CDS |
| GTCGCAAGGAGTATTGGAGT+TGG | 0.606634 | 2.2:+27475500 | MS.gene043837:CDS |
| TGAGCATCAACATTAGGCCA+TGG | 0.610028 | 2.2:-27475315 | None:intergenic |
| GAGAAACTTGAGAAATTGGT+CGG | 0.612925 | 2.2:+27475672 | MS.gene043837:CDS |
| TCCCCACCAGGAAAAGCACC+TGG | 0.616236 | 2.2:-27469780 | None:intergenic |
| TCCAAGATACACTTGCCAGA+GGG | 0.616781 | 2.2:+27474433 | MS.gene043837:CDS |
| TAATCCAAAGAATCATCCAA+TGG | 0.620771 | 2.2:-27472514 | None:intergenic |
| TATTCTGACCAAGTTAGGCA+AGG | 0.623130 | 2.2:+27474630 | MS.gene043837:CDS |
| ATGACAGCTTTAGTGTGGCT+AGG | 0.626895 | 2.2:+27469533 | MS.gene043837:CDS |
| GGTGGAGAGCGAATTTACAA+AGG | 0.630867 | 2.2:+27472155 | MS.gene043837:intron |
| CTCAGCTGTTGACCCAGATG+AGG | 0.633642 | 2.2:+27469556 | MS.gene043837:CDS |
| CCTTGCGACACCAAAGAGAA+CGG | 0.640152 | 2.2:-27475486 | None:intergenic |
| TGATTGGCTAAACCATGCAG+TGG | 0.651254 | 2.2:-27473081 | None:intergenic |
| AGGGTGGGATACATAAGTCA+AGG | 0.654340 | 2.2:+27472184 | MS.gene043837:CDS |
| GATTGGCTAAACCATGCAGT+GGG | 0.661247 | 2.2:-27473080 | None:intergenic |
| GAGGAATGACAGCTTTAGTG+TGG | 0.675279 | 2.2:+27469528 | MS.gene043837:CDS |
| ATGTGCAGTGATCATGAAGG+CGG | 0.675536 | 2.2:+27472746 | MS.gene043837:intron |
| ATCCAAGATACACTTGCCAG+AGG | 0.678943 | 2.2:+27474432 | MS.gene043837:CDS |
| AATCTGTTACTCAACCTGGA+GGG | 0.680688 | 2.2:-27470756 | None:intergenic |
| AAAACTCCATGTCCATACCC+AGG | 0.681286 | 2.2:-27474398 | None:intergenic |
| ATTCATAAAACTCTGAACAG+TGG | 0.683094 | 2.2:+27473550 | MS.gene043837:CDS |
| TGTTACAGGAAGTTCTACGA+TGG | 0.687651 | 2.2:+27473464 | MS.gene043837:intron |
| TTCATGTGCAGTGATCATGA+AGG | 0.695871 | 2.2:+27472743 | MS.gene043837:intron |
| GAACTACTATGGTCTAACTG+AGG | 0.714548 | 2.2:+27475353 | MS.gene043837:CDS |
| GAATTTACAAAGGCATACGA+GGG | 0.725539 | 2.2:+27472165 | MS.gene043837:CDS |
| CCTAATGTTGATGCTCACAG+TGG | 0.737956 | 2.2:+27475321 | MS.gene043837:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.2 | gene | 27468531 | 27475707 | 27468531 | ID=MS.gene043837 |
| chr2.2 | mRNA | 27468531 | 27475707 | 27468531 | ID=MS.gene043837.t1;Parent=MS.gene043837 |
| chr2.2 | exon | 27468531 | 27468542 | 27468531 | ID=MS.gene043837.t1.exon1;Parent=MS.gene043837.t1 |
| chr2.2 | CDS | 27468531 | 27468542 | 27468531 | ID=cds.MS.gene043837.t1;Parent=MS.gene043837.t1 |
| chr2.2 | exon | 27468614 | 27468655 | 27468614 | ID=MS.gene043837.t1.exon2;Parent=MS.gene043837.t1 |
| chr2.2 | CDS | 27468614 | 27468655 | 27468614 | ID=cds.MS.gene043837.t1;Parent=MS.gene043837.t1 |
| chr2.2 | exon | 27469319 | 27469384 | 27469319 | ID=MS.gene043837.t1.exon3;Parent=MS.gene043837.t1 |
| chr2.2 | CDS | 27469319 | 27469384 | 27469319 | ID=cds.MS.gene043837.t1;Parent=MS.gene043837.t1 |
| chr2.2 | exon | 27469512 | 27469577 | 27469512 | ID=MS.gene043837.t1.exon4;Parent=MS.gene043837.t1 |
| chr2.2 | CDS | 27469512 | 27469577 | 27469512 | ID=cds.MS.gene043837.t1;Parent=MS.gene043837.t1 |
| chr2.2 | exon | 27469732 | 27469845 | 27469732 | ID=MS.gene043837.t1.exon5;Parent=MS.gene043837.t1 |
| chr2.2 | CDS | 27469732 | 27469845 | 27469732 | ID=cds.MS.gene043837.t1;Parent=MS.gene043837.t1 |
| chr2.2 | exon | 27470056 | 27470119 | 27470056 | ID=MS.gene043837.t1.exon6;Parent=MS.gene043837.t1 |
| chr2.2 | CDS | 27470056 | 27470119 | 27470056 | ID=cds.MS.gene043837.t1;Parent=MS.gene043837.t1 |
| chr2.2 | exon | 27470681 | 27470763 | 27470681 | ID=MS.gene043837.t1.exon7;Parent=MS.gene043837.t1 |
| chr2.2 | CDS | 27470681 | 27470763 | 27470681 | ID=cds.MS.gene043837.t1;Parent=MS.gene043837.t1 |
| chr2.2 | exon | 27472156 | 27472205 | 27472156 | ID=MS.gene043837.t1.exon8;Parent=MS.gene043837.t1 |
| chr2.2 | CDS | 27472156 | 27472205 | 27472156 | ID=cds.MS.gene043837.t1;Parent=MS.gene043837.t1 |
| chr2.2 | exon | 27472281 | 27472358 | 27472281 | ID=MS.gene043837.t1.exon9;Parent=MS.gene043837.t1 |
| chr2.2 | CDS | 27472281 | 27472358 | 27472281 | ID=cds.MS.gene043837.t1;Parent=MS.gene043837.t1 |
| chr2.2 | exon | 27472489 | 27472617 | 27472489 | ID=MS.gene043837.t1.exon10;Parent=MS.gene043837.t1 |
| chr2.2 | CDS | 27472489 | 27472617 | 27472489 | ID=cds.MS.gene043837.t1;Parent=MS.gene043837.t1 |
| chr2.2 | exon | 27472754 | 27472796 | 27472754 | ID=MS.gene043837.t1.exon11;Parent=MS.gene043837.t1 |
| chr2.2 | CDS | 27472754 | 27472796 | 27472754 | ID=cds.MS.gene043837.t1;Parent=MS.gene043837.t1 |
| chr2.2 | exon | 27473018 | 27473104 | 27473018 | ID=MS.gene043837.t1.exon12;Parent=MS.gene043837.t1 |
| chr2.2 | CDS | 27473018 | 27473104 | 27473018 | ID=cds.MS.gene043837.t1;Parent=MS.gene043837.t1 |
| chr2.2 | exon | 27473472 | 27473576 | 27473472 | ID=MS.gene043837.t1.exon13;Parent=MS.gene043837.t1 |
| chr2.2 | CDS | 27473472 | 27473576 | 27473472 | ID=cds.MS.gene043837.t1;Parent=MS.gene043837.t1 |
| chr2.2 | exon | 27474392 | 27474499 | 27474392 | ID=MS.gene043837.t1.exon14;Parent=MS.gene043837.t1 |
| chr2.2 | CDS | 27474392 | 27474499 | 27474392 | ID=cds.MS.gene043837.t1;Parent=MS.gene043837.t1 |
| chr2.2 | exon | 27474601 | 27474651 | 27474601 | ID=MS.gene043837.t1.exon15;Parent=MS.gene043837.t1 |
| chr2.2 | CDS | 27474601 | 27474651 | 27474601 | ID=cds.MS.gene043837.t1;Parent=MS.gene043837.t1 |
| chr2.2 | exon | 27475306 | 27475379 | 27475306 | ID=MS.gene043837.t1.exon16;Parent=MS.gene043837.t1 |
| chr2.2 | CDS | 27475306 | 27475379 | 27475306 | ID=cds.MS.gene043837.t1;Parent=MS.gene043837.t1 |
| chr2.2 | exon | 27475478 | 27475529 | 27475478 | ID=MS.gene043837.t1.exon17;Parent=MS.gene043837.t1 |
| chr2.2 | CDS | 27475478 | 27475529 | 27475478 | ID=cds.MS.gene043837.t1;Parent=MS.gene043837.t1 |
| chr2.2 | exon | 27475615 | 27475707 | 27475615 | ID=MS.gene043837.t1.exon18;Parent=MS.gene043837.t1 |
| chr2.2 | CDS | 27475615 | 27475707 | 27475615 | ID=cds.MS.gene043837.t1;Parent=MS.gene043837.t1 |
| Gene Sequence |
| Protein sequence |