AlfalfaGEDB | MS.gene001666

M. sativa cultivar XinJiangDaYe / MS.gene001666

KEGG: -
GO: GO:0003674 GO:0005488 GO:0005515 GO:0008270 GO:0043167 GO:0043169 GO:0046872 GO:0046914
PFAM: PF01535.23 PF12854.10 PF13041.9 PF14432.9 PF20430.1 PF20431.1

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene001666.t1	XP_003610281.1	97.6	783	19	0	1	783	1	783	0.00E+00	1544.3

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene001666.t1	Q9SUH6	62.5	778	285	3	10	783	18	792	1.2e-292	1006.9

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene001666.t1	G7JFJ5	97.6	783	19	0	1	783	1	783	0.0e+00	1544.3

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
MS.gene001666	MS.gene070887	PPI
MS.gene001666	MS.gene069138	PPI
MS.gene001666	MS.gene068602	PPI
MS.gene013980	MS.gene001666	PPI
MS.gene016050	MS.gene001666	PPI
MS.gene017701	MS.gene001666	PPI
MS.gene027808	MS.gene001666	PPI
MS.gene027810	MS.gene001666	PPI
MS.gene068604	MS.gene001666	PPI
MS.gene33140	MS.gene001666	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene001666.t1	MTR_4g130500	97.573	783	19	0	1	783	1	783	0.0	1593
MS.gene001666.t1	MTR_3g011950	39.845	773	453	5	18	783	43	810	0.0	583
MS.gene001666.t1	MTR_7g023780	39.881	672	400	3	114	783	50	719	0.0	555
MS.gene001666.t1	MTR_7g023780	30.271	479	328	5	17	490	52	529	5.45e-68	239
MS.gene001666.t1	MTR_8g107740	36.821	755	450	7	45	783	42	785	8.71e-180	535
MS.gene001666.t1	MTR_8g107740	28.743	334	234	3	244	574	41	373	1.35e-34	142
MS.gene001666.t1	MTR_8g107740	25.694	432	277	9	14	438	215	609	2.71e-28	122
MS.gene001666.t1	MTR_4g085110	39.113	767	460	4	22	783	50	814	9.36e-179	533
MS.gene001666.t1	MTR_2g086150	36.842	760	468	7	30	783	114	867	2.73e-174	523
MS.gene001666.t1	MTR_2g086150	26.171	363	261	4	162	519	44	404	1.79e-36	148

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene001666.t1	AT4G30700	62.468	778	285	3	10	783	18	792	0.0	1040
MS.gene001666.t1	AT1G11290	37.061	769	479	3	18	783	43	809	0.0	557
MS.gene001666.t1	AT1G11290	28.736	522	364	4	96	614	19	535	9.35e-71	248
MS.gene001666.t1	AT4G33990	37.483	755	464	4	32	783	67	816	0.0	538
MS.gene001666.t1	AT4G33990	30.118	508	337	10	121	621	57	553	5.44e-61	221
MS.gene001666.t1	AT4G33990	25.617	527	322	15	1	503	229	709	3.81e-35	144
MS.gene001666.t1	AT4G33990	37.483	755	464	4	32	783	74	823	1.04e-180	538
MS.gene001666.t1	AT4G33990	30.118	508	337	10	121	621	64	560	5.05e-61	221
MS.gene001666.t1	AT4G33990	25.617	527	322	15	1	503	236	716	4.60e-35	143
MS.gene001666.t1	AT3G12770	37.446	689	423	4	97	783	12	694	1.40e-179	531

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Find 198 sgRNAs with CRISPR-Local

Find 216 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGAAAATGCCTGTTGAGC+CGG	0.437575	8.4:-3953377	MS.gene001666:CDS
AAAGATGGGATCTGTTCTTG+TGG	0.577071	8.4:-3952773	MS.gene001666:CDS
AAAGCGTAGGTGAAGTTATC+AGG	0.356315	8.4:+3954765	None:intergenic
AAATGGTTGCAGATGGGGTG+AGG	0.462766	8.4:-3954494	MS.gene001666:CDS
AACAGATCCCATCTTTGAAA+TGG	0.430122	8.4:+3952780	None:intergenic
AACCGATATTTATGCAAAGC+TGG	0.561342	8.4:-3953071	MS.gene001666:CDS
AACGGGCAAGATGAGGGAGA+TGG	0.525143	8.4:-3953041	MS.gene001666:CDS
AAGAAAATGCCTGTTGAGCC+GGG	0.485950	8.4:-3953376	MS.gene001666:CDS
AAGAAGAAGGTGAATCGTTG+AGG	0.562531	8.4:+3954832	None:intergenic
AAGAGGAAGATGTCGGGTTT+GGG	0.370755	8.4:+3954879	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AGAATACAAGGAAATCAAAC+CGG	+	chr8.4:3953505-3953524	None:intergenic	30.0%
AGTTGCAAGAGTTGAAAATT+GGG	-	chr8.4:3953421-3953440	MS.gene001666:CDS	30.0%
ATGATTCTATTCAGCTCTTT+AGG	-	chr8.4:3953331-3953350	MS.gene001666:CDS	30.0%
ATGCCCATTCTATTATTGAT+GGG	-	chr8.4:3953151-3953170	MS.gene001666:CDS	30.0%
CAAATGAGTGTATAGAGAAA+TGG	+	chr8.4:3953043-3953062	None:intergenic	30.0%
CATACCCATCAATAATAGAA+TGG	+	chr8.4:3953158-3953177	None:intergenic	30.0%
GCTGTTAAGACATAAATGTT+TGG	+	chr8.4:3954092-3954111	None:intergenic	30.0%
GTGAAAAGAATACTGTAACT+TGG	-	chr8.4:3954177-3954196	MS.gene001666:CDS	30.0%
TATAGAGAAATGGAAGAAGA+AGG	+	chr8.4:3953033-3953052	None:intergenic	30.0%
TGATTCTATTCAGCTCTTTA+GGG	-	chr8.4:3953332-3953351	MS.gene001666:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8.4	gene	3952760	3955111	3952760	ID=MS.gene001666
chr8.4	mRNA	3952760	3955111	3952760	ID=MS.gene001666.t1;Parent=MS.gene001666
chr8.4	exon	3952760	3955111	3952760	ID=MS.gene001666.t1.exon1;Parent=MS.gene001666.t1
chr8.4	CDS	3952760	3955111	3952760	ID=cds.MS.gene001666.t1;Parent=MS.gene001666.t1

Gene Sequence

>MS.gene001666

ATGATTCTCAGCAATAGCAGTGGCAAACTTAGCCGCAACACACTATTTTCCCTAATCAACAAAGCTTCCACCTTTCCTCATCTTGCTCAAACCCACGCTCAACTCATTCTCAATGGTTACCGTTTCGACCTCGCCACCATCACCAAACTCACTCAAAAACTCTTCGACTTCTCCGCCACGCGCCATGCACGCGCCATCTTCTTCTCTGTTCCCAAACCCGACATCTTCCTCTTCAATGTCCTCGTTCGTGGCTTCTCCCTCAACGATTCACCTTCTTCTTCCATTTCTCTATACACTCATTTGCGTCGAAATACCAATCTTGCACCTGATAACTTCACCTACGCTTTCGCCGTTGCAGCTTGTTCTAATGATAAGCATTTGATGCTTCTGCATGCCCATTCTATTATTGATGGGTATGGTTCTAATGTGTTTGTTGGTTCTGCTCTTGTTGACTTGTACTGCAAGTTTTCAAGAGTTGTGTATGCAAGGAAAGTGTTTGATGGAATGCCTGAGAGAGATACTGTTTTGTGGAACACCATGATTAATGGGTTGGTTAAAAATTGTTGTTTTGATGATTCTATTCAGCTCTTTAGGGAAATGGTTGCAGATGGGGTGAGGGTGGATTCGTCGACTGTTACTGCTGTGCTTCCTGCTGCTGCTGAGTTGCAAGAGTTGAAAATTGGGATGGGGATTCAATGTTTGGCTTTGAAAATTGGGTTTGGTTTTTGTGATTATGTGTTGACCGGTTTGATTTCCTTGTATTCTAAATGTGGGGATGTAAACACGGCGAGGTTGTTGTTTAGGAGGATTAGTAGACCAGACTTGATAGCTTACAATGCGATGATTTCTGGATTTACTGCCAATGGTGATACTGAATGTTCTGTGAAGCTTTTCAGAGAGCTGCTTTTTTCTAGTGAGAGAGTCAGTTCAAGTACAATTGTTGGTTTGATTCCATTGCATTCTCCCTTTGGTCATCTGTATTTGGCTTGCTCTATTCATGGGTTTTGTGTGAAATCTGGTATTATTTTGAATCCGACCGTTTCAACTGCACTCACTGCTATATACAACAAACTTAATGAAATAGATTTGGCTCGCCAACTGTTTGATGAATCGCCAGAGAAAACCGTGGTGGCTTGGAATGCTATGATTTCGGGTTACACGCAAAATGGTTCGACAGAGACGGCTATCTCTCTTTTTAAGGAAATGATGAAGACTGAATTCACTCCAAATGCAGTTACCATCACGACCATCCTTTCAGCTTGTGCTCAACTAGGATCTCTAAGTTTTGGAAAATGGGTCCATCAGTTGATTAAAAGCAAAAATCTTGAGCCAAACATTTATGTCTTAACAGCTCTAGTTGACATGTACGCCAAGTGTGGGAACATTTCGGAGGCTTGGCAATTATTTGACTCGATGAGTGAAAAGAATACTGTAACTTGGAATACTATGATTTTTGGTTATGGGCTCCATGGATATGGGCATGAAGCACTTAAGCTTTATAATGAGATGTTACATTTAGGGTACAATCCATCTGCGGTCACTTTTCTTTCAGTCTTGTATGCTTGCAGCCATGCTGGCTTAGTAGCAGAAGGAGAGGAAATTTTTCATAATATGGTCAATAAATACAGGATTGACCCCTTAATCGAGCACTATGCATGCATGGTGGACATTCTGGGACGATCTGGACAGTTAGAAAAAGCCTTAGAATTTATAAAGAAAATGCCTGTTGAGCCGGGTCCTGCTGTCTGGGGTACACTGCTTGGCGCCTGCATGATTCACAAAGACACGGACATAGCCCGCTTGGCTTCAGAAAGGCTATTTGAACTCGATCCAGGTAGTGTAGGATACTATGTCTTACTTTCTAATATATACTCTGTAGAGAGAAACTTCCCAAAGGCTGCTTCAATACGACAAGTTGTTAAGAAAAGAAAACTGGCAAAGAGTCCAGGGTGCACTCTAATTGAGGTTAATGGGACCCCCCATGTCTTTGTATCTGGTGATCGTTCTCATTCTCATGCAACCGATATTTATGCAAAGCTGGAGAAGTTAACGGGCAAGATGAGGGAGATGGGGTATCAGGCAGAAATAGTCCCTGCTTTACATGACGTGGAAGAAGAGGAAAAAGAACTCGCGGTGAATGTTCATAGTGAGAAGTTAGCCATAGCTTTTGGCCTTATCACCACTGAACCTGGTACCGAGATCAGGATCATCAAGAATCTTCGGGTTTGTTTAGATTGCCATACTGCAACTAAGTTTATATCGAAGATCACTGAAAGAGTGATAGTGGTTAGGGATGCTAACAGATTCCACCATTTCAAAGATGGGATCTGTTCTTGTGGCGATTATTGGTGA

Protein sequence

>MS.gene001666.t1

MILSNSSGKLSRNTLFSLINKASTFPHLAQTHAQLILNGYRFDLATITKLTQKLFDFSATRHARAIFFSVPKPDIFLFNVLVRGFSLNDSPSSSISLYTHLRRNTNLAPDNFTYAFAVAACSNDKHLMLLHAHSIIDGYGSNVFVGSALVDLYCKFSRVVYARKVFDGMPERDTVLWNTMINGLVKNCCFDDSIQLFREMVADGVRVDSSTVTAVLPAAAELQELKIGMGIQCLALKIGFGFCDYVLTGLISLYSKCGDVNTARLLFRRISRPDLIAYNAMISGFTANGDTECSVKLFRELLFSSERVSSSTIVGLIPLHSPFGHLYLACSIHGFCVKSGIILNPTVSTALTAIYNKLNEIDLARQLFDESPEKTVVAWNAMISGYTQNGSTETAISLFKEMMKTEFTPNAVTITTILSACAQLGSLSFGKWVHQLIKSKNLEPNIYVLTALVDMYAKCGNISEAWQLFDSMSEKNTVTWNTMIFGYGLHGYGHEALKLYNEMLHLGYNPSAVTFLSVLYACSHAGLVAEGEEIFHNMVNKYRIDPLIEHYACMVDILGRSGQLEKALEFIKKMPVEPGPAVWGTLLGACMIHKDTDIARLASERLFELDPGSVGYYVLLSNIYSVERNFPKAASIRQVVKKRKLAKSPGCTLIEVNGTPHVFVSGDRSHSHATDIYAKLEKLTGKMREMGYQAEIVPALHDVEEEEKELAVNVHSEKLAIAFGLITTEPGTEIRIIKNLRVCLDCHTATKFISKITERVIVVRDANRFHHFKDGICSCGDYW